Multiple sequence alignment - TraesCS3B01G052200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G052200 chr3B 100.000 6674 0 0 1 6674 26523045 26529718 0.000000e+00 12325.0
1 TraesCS3B01G052200 chr3A 91.960 2276 150 19 2278 4532 17597386 17599649 0.000000e+00 3158.0
2 TraesCS3B01G052200 chr3A 88.061 1650 126 25 679 2281 17595726 17597351 0.000000e+00 1890.0
3 TraesCS3B01G052200 chr3A 91.714 700 34 12 1 678 17594861 17595558 0.000000e+00 950.0
4 TraesCS3B01G052200 chr3A 87.600 750 69 13 4525 5262 17599794 17600531 0.000000e+00 848.0
5 TraesCS3B01G052200 chr3A 87.258 722 59 12 5253 5953 17601747 17602456 0.000000e+00 793.0
6 TraesCS3B01G052200 chr3A 79.079 239 39 9 158 392 57231401 57231632 3.220000e-33 154.0
7 TraesCS3B01G052200 chr3A 81.098 164 25 6 2342 2503 203726675 203726516 7.030000e-25 126.0
8 TraesCS3B01G052200 chr3A 96.774 62 2 0 6347 6408 17603683 17603744 3.290000e-18 104.0
9 TraesCS3B01G052200 chr3D 92.165 2055 136 12 3916 5953 10666244 10664198 0.000000e+00 2880.0
10 TraesCS3B01G052200 chr3D 93.989 1647 82 12 2282 3916 10668115 10666474 0.000000e+00 2477.0
11 TraesCS3B01G052200 chr3D 90.893 1647 106 17 679 2284 10669792 10668149 0.000000e+00 2170.0
12 TraesCS3B01G052200 chr3D 92.327 404 19 4 1 393 10670820 10670418 1.260000e-156 564.0
13 TraesCS3B01G052200 chr3D 91.374 313 17 6 373 678 10670268 10669959 2.880000e-113 420.0
14 TraesCS3B01G052200 chr3D 86.628 344 32 6 6045 6383 10663951 10663617 1.060000e-97 368.0
15 TraesCS3B01G052200 chr7D 97.382 191 5 0 6484 6674 539382073 539381883 6.450000e-85 326.0
16 TraesCS3B01G052200 chr7D 96.875 192 5 1 6484 6674 265507775 265507966 3.000000e-83 320.0
17 TraesCS3B01G052200 chr6D 97.382 191 5 0 6484 6674 251231700 251231890 6.450000e-85 326.0
18 TraesCS3B01G052200 chr6D 80.294 340 48 15 119 449 105823284 105823613 8.650000e-59 239.0
19 TraesCS3B01G052200 chr6D 82.051 156 22 4 2367 2518 139668293 139668140 1.950000e-25 128.0
20 TraesCS3B01G052200 chr5B 97.382 191 5 0 6484 6674 69282645 69282835 6.450000e-85 326.0
21 TraesCS3B01G052200 chr5B 85.034 147 19 3 2343 2487 205249939 205250084 5.390000e-31 147.0
22 TraesCS3B01G052200 chr1A 97.382 191 5 0 6484 6674 540723167 540722977 6.450000e-85 326.0
23 TraesCS3B01G052200 chr6A 96.859 191 6 0 6484 6674 588602129 588602319 3.000000e-83 320.0
24 TraesCS3B01G052200 chr6A 96.859 191 6 0 6484 6674 600261216 600261026 3.000000e-83 320.0
25 TraesCS3B01G052200 chr6A 82.320 181 25 5 2342 2518 183186712 183186535 4.170000e-32 150.0
26 TraesCS3B01G052200 chr4A 96.875 192 5 1 6484 6674 208931419 208931228 3.000000e-83 320.0
27 TraesCS3B01G052200 chr4A 74.352 347 73 14 85 424 485510814 485511151 4.200000e-27 134.0
28 TraesCS3B01G052200 chr4A 78.986 138 18 7 302 429 56140119 56140255 4.290000e-12 84.2
29 TraesCS3B01G052200 chr1D 96.859 191 6 0 6484 6674 103032227 103032037 3.000000e-83 320.0
30 TraesCS3B01G052200 chr2A 80.163 368 50 16 97 449 29324230 29324589 3.090000e-63 254.0
31 TraesCS3B01G052200 chr5A 78.549 317 41 17 121 429 559739202 559738905 4.110000e-42 183.0
32 TraesCS3B01G052200 chr6B 77.709 323 50 17 99 412 192354090 192353781 1.910000e-40 178.0
33 TraesCS3B01G052200 chr6B 84.076 157 17 6 2367 2518 239717357 239717204 1.940000e-30 145.0
34 TraesCS3B01G052200 chr6B 80.292 137 16 6 2392 2518 371383836 371383971 7.130000e-15 93.5
35 TraesCS3B01G052200 chr4D 79.245 159 26 6 2343 2496 45986032 45985876 3.290000e-18 104.0
36 TraesCS3B01G052200 chr4D 78.832 137 19 7 303 429 398657481 398657617 4.290000e-12 84.2
37 TraesCS3B01G052200 chr1B 81.061 132 21 3 86 214 16761034 16761164 1.180000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G052200 chr3B 26523045 26529718 6673 False 12325.000000 12325 100.000000 1 6674 1 chr3B.!!$F1 6673
1 TraesCS3B01G052200 chr3A 17594861 17603744 8883 False 1290.500000 3158 90.561167 1 6408 6 chr3A.!!$F2 6407
2 TraesCS3B01G052200 chr3D 10663617 10670820 7203 True 1479.833333 2880 91.229333 1 6383 6 chr3D.!!$R1 6382

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
972 1352 0.594110 GCTCGGAGATAGTAGCGCTT 59.406 55.000 18.68 0.0 33.89 4.68 F
1346 1740 0.244721 AAGGGGTTACTACGACGCAC 59.755 55.000 0.00 0.0 0.00 5.34 F
1606 2008 0.461961 CTTGTAAGGGCCTCTCCTCG 59.538 60.000 6.46 0.0 35.80 4.63 F
3041 3500 0.469917 AATCTGGCTACGGGATGGTG 59.530 55.000 0.00 0.0 0.00 4.17 F
3281 3741 1.201647 CGTGCCGGACTGGGTATATAG 59.798 57.143 5.05 0.0 38.63 1.31 F
4383 5084 1.340991 GGGTTGACATATGTGCAGGGT 60.341 52.381 14.43 0.0 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2264 2675 2.107950 TTGTGATGAAGGCCGTTAGG 57.892 50.0 0.0 0.0 41.62 2.69 R
3041 3500 0.107643 GAGCCTATGCCACCTTCTCC 59.892 60.0 0.0 0.0 38.69 3.71 R
3281 3741 2.654749 TGAGTCCGATGATGTGACAC 57.345 50.0 0.0 0.0 0.00 3.67 R
4103 4801 0.040204 AAATTGGGCTGGTCTCTGGG 59.960 55.0 0.0 0.0 0.00 4.45 R
5174 6039 0.179020 TGTTCAAGACAGTGCCCCAG 60.179 55.0 0.0 0.0 33.40 4.45 R
6019 8149 0.253610 TGTCCAGGTGTGTTTCCGTT 59.746 50.0 0.0 0.0 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 93 4.816786 AATTGGTGCATGAAAAAGTTGC 57.183 36.364 0.00 0.00 0.00 4.17
200 212 1.596603 AGGTGCTTGCAAAATTTGGC 58.403 45.000 10.83 10.83 0.00 4.52
236 248 8.028938 ACATAAAATGAGCTCCATACAAACAAC 58.971 33.333 12.15 0.00 34.45 3.32
255 267 4.248058 CAACCCAAAAATTCTGCTCATCC 58.752 43.478 0.00 0.00 0.00 3.51
258 270 4.533311 ACCCAAAAATTCTGCTCATCCAAT 59.467 37.500 0.00 0.00 0.00 3.16
281 293 1.750206 TGCACACAAGTTTGAGCACAT 59.250 42.857 0.00 0.00 32.52 3.21
310 323 6.245408 TGTTATGTTTTGTATGGAGCTCCTT 58.755 36.000 32.28 27.65 36.82 3.36
341 354 3.428589 TTTGGCAACCAAATTTTGCAAGC 60.429 39.130 13.74 6.51 46.92 4.01
362 375 7.362056 GCAAGCACTTAGAACCTTTGATCATAA 60.362 37.037 0.00 0.00 0.00 1.90
366 379 8.341173 GCACTTAGAACCTTTGATCATAATCAG 58.659 37.037 0.00 0.00 42.72 2.90
445 636 6.330278 GGTGCAATTCAGGGTATAGAAAAAC 58.670 40.000 0.00 0.00 0.00 2.43
453 644 4.630069 CAGGGTATAGAAAAACCACACTCG 59.370 45.833 0.00 0.00 37.51 4.18
583 774 6.989169 GGTTGTGTGCATCTCTAATTCTCTAT 59.011 38.462 0.00 0.00 0.00 1.98
589 780 7.496920 TGTGCATCTCTAATTCTCTATTTGGTG 59.503 37.037 0.00 0.00 0.00 4.17
613 804 4.624882 CAGAGGTCGAGAGAAGTGAAATTG 59.375 45.833 0.00 0.00 45.01 2.32
632 823 3.542712 TGTCTCTCAAATTTGAAGCGC 57.457 42.857 20.82 0.00 36.64 5.92
636 827 1.069296 TCTCAAATTTGAAGCGCGTGG 60.069 47.619 20.82 7.73 36.64 4.94
640 831 1.745232 AATTTGAAGCGCGTGGGATA 58.255 45.000 8.43 0.00 0.00 2.59
641 832 1.967319 ATTTGAAGCGCGTGGGATAT 58.033 45.000 8.43 0.00 0.00 1.63
692 1050 6.183360 GCCCACTTGCATATATGTTAGCTATG 60.183 42.308 14.14 6.50 0.00 2.23
693 1051 6.183360 CCCACTTGCATATATGTTAGCTATGC 60.183 42.308 14.14 8.17 45.04 3.14
790 1148 7.309867 GGTTCTCTGAACTGAACTAGACCATTA 60.310 40.741 9.81 0.00 41.42 1.90
843 1201 1.231221 TCCGATTTGGTTTGTGGTCG 58.769 50.000 0.00 0.00 39.52 4.79
847 1205 1.002251 GATTTGGTTTGTGGTCGCGAA 60.002 47.619 12.06 0.00 0.00 4.70
858 1216 3.997681 TGTGGTCGCGAATTTTCTGAATA 59.002 39.130 12.06 0.00 0.00 1.75
860 1218 4.786575 GTGGTCGCGAATTTTCTGAATAAC 59.213 41.667 12.06 0.00 0.00 1.89
865 1242 7.096394 GGTCGCGAATTTTCTGAATAACAAAAA 60.096 33.333 12.06 0.00 0.00 1.94
866 1243 7.939386 GTCGCGAATTTTCTGAATAACAAAAAG 59.061 33.333 12.06 0.00 0.00 2.27
874 1251 6.325919 TCTGAATAACAAAAAGAATGCGGT 57.674 33.333 0.00 0.00 0.00 5.68
891 1268 0.968405 GGTTTTGCTGATGGAGGCAA 59.032 50.000 0.00 0.00 45.06 4.52
892 1269 1.337167 GGTTTTGCTGATGGAGGCAAC 60.337 52.381 0.00 0.00 46.14 4.17
894 1271 0.961019 TTTGCTGATGGAGGCAACAC 59.039 50.000 0.00 0.00 46.14 3.32
908 1285 1.297304 AACACAAGACGTTTGCGCG 60.297 52.632 0.00 0.00 42.83 6.86
928 1305 3.062763 CGCCCTGTCTATAAATCTGCAG 58.937 50.000 7.63 7.63 0.00 4.41
939 1319 2.776370 AATCTGCAGTGGCCAGTGGG 62.776 60.000 35.86 17.07 40.13 4.61
957 1337 0.804989 GGTGGAACAATGGAAGCTCG 59.195 55.000 0.00 0.00 44.16 5.03
972 1352 0.594110 GCTCGGAGATAGTAGCGCTT 59.406 55.000 18.68 0.00 33.89 4.68
1008 1394 2.202797 AGCAGCAGTATGTCGGCG 60.203 61.111 0.00 0.00 41.85 6.46
1037 1423 2.747460 CGTCCATGGCAGTGGTGG 60.747 66.667 6.96 7.10 40.27 4.61
1038 1424 2.436109 GTCCATGGCAGTGGTGGT 59.564 61.111 6.96 0.00 40.27 4.16
1047 1433 0.607489 GCAGTGGTGGTGAGCTTCAT 60.607 55.000 0.00 0.00 0.00 2.57
1056 1442 1.767681 GGTGAGCTTCATGAGGGAGAT 59.232 52.381 6.99 0.00 0.00 2.75
1062 1448 2.437281 GCTTCATGAGGGAGATGAGGAA 59.563 50.000 6.99 0.00 30.41 3.36
1070 1456 1.280457 GGAGATGAGGAACACCACCT 58.720 55.000 0.00 0.00 40.80 4.00
1126 1512 1.257743 GAGGAGCAGTACACAGGTGA 58.742 55.000 6.40 0.00 0.00 4.02
1128 1514 0.679505 GGAGCAGTACACAGGTGACA 59.320 55.000 6.40 0.00 0.00 3.58
1133 1519 1.300620 GTACACAGGTGACAGCGCA 60.301 57.895 11.47 0.00 0.00 6.09
1215 1601 6.199342 GCGAACTTTCTACCTTTCTAGCTATG 59.801 42.308 0.00 0.00 0.00 2.23
1245 1631 3.951037 AGTATTGGTCACAAAGCACACAA 59.049 39.130 0.00 0.00 40.55 3.33
1251 1637 3.115554 GTCACAAAGCACACAATGGAAC 58.884 45.455 0.00 0.00 0.00 3.62
1252 1638 3.023119 TCACAAAGCACACAATGGAACT 58.977 40.909 0.00 0.00 0.00 3.01
1336 1730 3.664240 CCCACTCCAAAGGGGTTAC 57.336 57.895 0.00 0.00 45.61 2.50
1343 1737 1.545582 TCCAAAGGGGTTACTACGACG 59.454 52.381 0.00 0.00 38.11 5.12
1346 1740 0.244721 AAGGGGTTACTACGACGCAC 59.755 55.000 0.00 0.00 0.00 5.34
1361 1755 6.897259 ACGACGCACTACACATAAAAATAT 57.103 33.333 0.00 0.00 0.00 1.28
1387 1781 7.037438 GCAAAAGAGATGATTTGGCATAAAGA 58.963 34.615 0.00 0.00 36.71 2.52
1426 1823 8.838649 ATTTTATAAGGTCATAAGTTGGGCTT 57.161 30.769 0.00 0.00 41.05 4.35
1429 1826 3.806949 AGGTCATAAGTTGGGCTTCAA 57.193 42.857 0.00 0.00 38.57 2.69
1564 1961 2.101582 CCTGGTCCTAGCACTATGACAC 59.898 54.545 13.02 5.53 33.97 3.67
1566 1963 1.536284 GGTCCTAGCACTATGACACGC 60.536 57.143 13.02 0.00 33.97 5.34
1587 1989 5.288472 ACGCTGTCTTTGATTTTTGTTGTTC 59.712 36.000 0.00 0.00 0.00 3.18
1606 2008 0.461961 CTTGTAAGGGCCTCTCCTCG 59.538 60.000 6.46 0.00 35.80 4.63
1634 2036 9.586435 AGTGCTATTAATTACAATTTGAAAGCC 57.414 29.630 2.79 0.00 0.00 4.35
1640 2042 8.825667 TTAATTACAATTTGAAAGCCTCCAAC 57.174 30.769 2.79 0.00 0.00 3.77
1641 2043 5.860941 TTACAATTTGAAAGCCTCCAACA 57.139 34.783 2.79 0.00 0.00 3.33
1651 2053 7.243604 TGAAAGCCTCCAACATGAAATTAAT 57.756 32.000 0.00 0.00 0.00 1.40
1714 2120 4.141251 TGTCCTAAGCTTTTTGGAGACCTT 60.141 41.667 3.20 0.00 0.00 3.50
1762 2168 5.804979 ACGAAACATTGTTTGGAAGAAACTG 59.195 36.000 25.09 7.19 0.00 3.16
1879 2285 0.535102 CAACTCAGAAGCCACGGGTT 60.535 55.000 0.00 0.00 38.65 4.11
1880 2286 1.053424 AACTCAGAAGCCACGGGTTA 58.947 50.000 0.00 0.00 35.84 2.85
1881 2287 0.608640 ACTCAGAAGCCACGGGTTAG 59.391 55.000 0.00 0.00 35.84 2.34
1912 2320 8.371699 CAAAATTAATTTTTACCTCTCCCACCA 58.628 33.333 20.92 0.00 37.86 4.17
2080 2488 2.460669 GTGGGAATCTCATTGGCCTTT 58.539 47.619 3.32 0.00 0.00 3.11
2108 2519 8.561212 CCTACAAAGTACTACTAGTGCTCATAG 58.439 40.741 5.39 8.88 40.32 2.23
2234 2645 4.624125 GCAAAGCTCTTTCTTCTAGGCCTA 60.624 45.833 13.09 13.09 0.00 3.93
2264 2675 6.833839 TCAAGGTAAATACACATGCGTTTAC 58.166 36.000 0.00 3.47 36.69 2.01
2268 2679 7.306205 GGTAAATACACATGCGTTTACCTAA 57.694 36.000 22.04 0.00 46.33 2.69
2269 2680 7.182089 GGTAAATACACATGCGTTTACCTAAC 58.818 38.462 22.04 7.34 46.33 2.34
2331 2779 3.994392 ACTACATGATTGTTCGTCCACAC 59.006 43.478 0.00 0.00 37.28 3.82
2514 2962 6.591448 CCCAAAATGCTCTTCCTTAATGTTTC 59.409 38.462 0.00 0.00 0.00 2.78
2610 3062 8.671384 TCTTACATTAGTTATACAATGGTGGC 57.329 34.615 0.00 0.00 36.63 5.01
2615 3068 7.553402 ACATTAGTTATACAATGGTGGCGTAAA 59.447 33.333 0.00 0.00 36.63 2.01
2707 3160 2.373169 TCCAAGTGGTTCTGAGAGCAAT 59.627 45.455 0.00 0.00 36.34 3.56
2787 3240 7.624549 ACATACATGATCTTACATATGGGGTC 58.375 38.462 7.80 3.60 0.00 4.46
2796 3249 6.020389 TCTTACATATGGGGTCGATATTGGA 58.980 40.000 7.80 0.00 0.00 3.53
2851 3305 5.649395 CCAATCATCGCCAACCTATCATTAT 59.351 40.000 0.00 0.00 0.00 1.28
3041 3500 0.469917 AATCTGGCTACGGGATGGTG 59.530 55.000 0.00 0.00 0.00 4.17
3078 3537 3.822735 GGCTCTGGCTATGCAATAATCAA 59.177 43.478 0.00 0.00 38.73 2.57
3106 3565 2.009051 CGATGCCAGTTGTGAGCATAA 58.991 47.619 0.00 0.00 46.81 1.90
3107 3566 2.031314 CGATGCCAGTTGTGAGCATAAG 59.969 50.000 0.00 0.00 46.81 1.73
3127 3586 7.549488 GCATAAGACACTGACCTATACAAACTT 59.451 37.037 0.00 0.00 0.00 2.66
3189 3648 9.913310 TTGTTATTATTCACATACTTCATCCCA 57.087 29.630 0.00 0.00 0.00 4.37
3196 3655 7.959658 TTCACATACTTCATCCCATCATTTT 57.040 32.000 0.00 0.00 0.00 1.82
3256 3716 2.137523 ACACGGTGATTTTGTACGGTC 58.862 47.619 16.29 0.00 0.00 4.79
3281 3741 1.201647 CGTGCCGGACTGGGTATATAG 59.798 57.143 5.05 0.00 38.63 1.31
3309 3769 3.912496 TCATCGGACTCAACCATGAAT 57.088 42.857 0.00 0.00 34.49 2.57
3658 4126 3.888930 CCATTTGGAACTTGTAGTGGTGT 59.111 43.478 0.00 0.00 37.39 4.16
3759 4227 4.192317 CTCCTAAGGTGTGGAAATAGTGC 58.808 47.826 0.00 0.00 31.23 4.40
3772 4240 2.926778 ATAGTGCCATCTTCCTCAGC 57.073 50.000 0.00 0.00 0.00 4.26
3942 4640 2.968574 TCTCCCTCACCAGAATATCAGC 59.031 50.000 0.00 0.00 0.00 4.26
3951 4649 5.882557 TCACCAGAATATCAGCTTTCCTTTC 59.117 40.000 0.00 0.00 0.00 2.62
4011 4709 2.417719 CAACTCCGAGGGACTTTTCAG 58.582 52.381 0.00 0.00 41.55 3.02
4045 4743 4.261741 GCTGCTTGTCTCAAATGAGGAAAA 60.262 41.667 10.37 2.80 42.30 2.29
4046 4744 5.737063 GCTGCTTGTCTCAAATGAGGAAAAA 60.737 40.000 10.37 0.69 42.30 1.94
4103 4801 7.484641 TCATTTAAACTCGTTGCTATGAAATGC 59.515 33.333 6.77 0.00 0.00 3.56
4114 4812 2.431954 ATGAAATGCCCAGAGACCAG 57.568 50.000 0.00 0.00 0.00 4.00
4164 4864 3.439129 CCGTCAACAAAATCCTAGTTCCC 59.561 47.826 0.00 0.00 0.00 3.97
4170 4870 4.514401 ACAAAATCCTAGTTCCCGATGAC 58.486 43.478 0.00 0.00 0.00 3.06
4358 5059 9.964303 TTGTAAATACCATGATTAATGATGTGC 57.036 29.630 12.99 0.22 38.72 4.57
4362 5063 9.537192 AAATACCATGATTAATGATGTGCTTTG 57.463 29.630 12.99 0.74 38.72 2.77
4375 5076 2.824936 TGTGCTTTGGGGTTGACATATG 59.175 45.455 0.00 0.00 0.00 1.78
4383 5084 1.340991 GGGTTGACATATGTGCAGGGT 60.341 52.381 14.43 0.00 0.00 4.34
4431 5132 5.245301 AGTCTTAGCTACACATGTGTAACCA 59.755 40.000 32.40 19.14 44.47 3.67
4475 5176 2.170607 CACGGGGATCTATCTGTTGGTT 59.829 50.000 0.00 0.00 0.00 3.67
4479 5180 4.600062 GGGGATCTATCTGTTGGTTTGTT 58.400 43.478 0.00 0.00 0.00 2.83
4560 5411 8.293699 ACTATTAATCCCACATTCCAAAACTC 57.706 34.615 0.00 0.00 0.00 3.01
4568 5419 5.449304 CCACATTCCAAAACTCGAGTTTAC 58.551 41.667 36.49 0.00 46.47 2.01
4723 5574 7.270757 TCAAGAAAGCATACAAAAAGCTACA 57.729 32.000 0.00 0.00 37.70 2.74
4731 5582 8.352752 AGCATACAAAAAGCTACAAGTTTTTC 57.647 30.769 2.60 0.00 37.59 2.29
4818 5669 7.455008 TGAGGAGAAGGAGAAAACTATACAAGT 59.545 37.037 0.00 0.00 41.49 3.16
4854 5705 5.313712 AGGAACATTGTGGTTTCGACTATT 58.686 37.500 0.00 0.00 31.30 1.73
4989 5840 7.235399 AGGAAACCACTTTCACATTATCCAAAT 59.765 33.333 0.00 0.00 38.04 2.32
5004 5855 3.141398 TCCAAATCATCCGCAGAATAGC 58.859 45.455 0.00 0.00 0.00 2.97
5174 6039 2.237393 TGCATGTTTTTGGTTGCCTC 57.763 45.000 0.00 0.00 34.20 4.70
5178 6043 1.118838 TGTTTTTGGTTGCCTCTGGG 58.881 50.000 0.00 0.00 0.00 4.45
5198 6063 2.397549 GGCACTGTCTTGAACATTTGC 58.602 47.619 4.24 4.24 42.24 3.68
5225 6090 2.636893 ACAGTTCAGTCCTGAGAGCATT 59.363 45.455 0.00 0.00 41.13 3.56
5226 6091 3.001414 CAGTTCAGTCCTGAGAGCATTG 58.999 50.000 0.00 0.00 41.13 2.82
5227 6092 2.636893 AGTTCAGTCCTGAGAGCATTGT 59.363 45.455 0.00 0.00 41.13 2.71
5248 6113 6.135290 TGTAGATGTAAATGCTTGGATTGC 57.865 37.500 0.00 0.00 0.00 3.56
5251 6116 1.818060 TGTAAATGCTTGGATTGCGCT 59.182 42.857 9.73 0.00 0.00 5.92
5271 7361 0.757512 TGCCCTTGCAGCATGAAAAA 59.242 45.000 9.87 0.00 44.23 1.94
5314 7404 5.105716 GCGCATGGAGTAGGATTTATCTCTA 60.106 44.000 0.30 0.00 0.00 2.43
5315 7405 6.572509 GCGCATGGAGTAGGATTTATCTCTAA 60.573 42.308 0.30 0.00 0.00 2.10
5526 7616 3.344515 CCTTGTAAGGCACCTAAGTTCC 58.655 50.000 0.00 0.00 39.76 3.62
5613 7719 9.773328 AAATGTGTGCGTATATATAATTGATGC 57.227 29.630 0.00 0.00 0.00 3.91
5628 7734 1.135717 TGATGCCATCGCTTTTTGTCG 60.136 47.619 0.00 0.00 35.36 4.35
5678 7784 3.071874 TGGAACAGGCGATTGATCTTT 57.928 42.857 0.00 0.00 0.00 2.52
5783 7890 8.246180 ACTTGAACTCAATGCGATTTCATAAAT 58.754 29.630 0.00 0.00 41.40 1.40
5785 7892 7.760437 TGAACTCAATGCGATTTCATAAATCA 58.240 30.769 11.69 0.00 45.94 2.57
5793 7900 6.554419 TGCGATTTCATAAATCACAAAGGAG 58.446 36.000 11.69 0.00 45.94 3.69
5806 7913 6.957920 TCACAAAGGAGATTCAATGTTTGA 57.042 33.333 0.00 0.00 38.04 2.69
5811 7918 8.859090 ACAAAGGAGATTCAATGTTTGATTGTA 58.141 29.630 0.00 0.00 39.84 2.41
5838 7945 1.068895 AGCTCTCATCATCTGGCTTCG 59.931 52.381 0.00 0.00 0.00 3.79
5893 8000 5.061920 ACAGTGCTAGCTAAGTACAAGTC 57.938 43.478 17.23 0.00 42.81 3.01
5953 8063 4.430908 AGGTAGTTTAAGATTCTTCGCCG 58.569 43.478 1.27 0.00 0.00 6.46
5955 8065 5.126061 AGGTAGTTTAAGATTCTTCGCCGTA 59.874 40.000 1.27 0.00 0.00 4.02
5972 8102 3.372954 CCGTATAAGAGTTCAGCTTCCG 58.627 50.000 0.00 0.00 0.00 4.30
5997 8127 4.286101 CTCTGCATCGTAGATGTACACAG 58.714 47.826 0.00 9.49 45.12 3.66
6015 8145 3.796178 CACAGCCAACAACATACAAACAC 59.204 43.478 0.00 0.00 0.00 3.32
6017 8147 3.796178 CAGCCAACAACATACAAACACAC 59.204 43.478 0.00 0.00 0.00 3.82
6018 8148 3.445450 AGCCAACAACATACAAACACACA 59.555 39.130 0.00 0.00 0.00 3.72
6019 8149 4.081972 AGCCAACAACATACAAACACACAA 60.082 37.500 0.00 0.00 0.00 3.33
6020 8150 4.627467 GCCAACAACATACAAACACACAAA 59.373 37.500 0.00 0.00 0.00 2.83
6021 8151 5.445275 GCCAACAACATACAAACACACAAAC 60.445 40.000 0.00 0.00 0.00 2.93
6022 8152 5.220117 CCAACAACATACAAACACACAAACG 60.220 40.000 0.00 0.00 0.00 3.60
6023 8153 4.416620 ACAACATACAAACACACAAACGG 58.583 39.130 0.00 0.00 0.00 4.44
6024 8154 4.156190 ACAACATACAAACACACAAACGGA 59.844 37.500 0.00 0.00 0.00 4.69
6025 8155 4.966965 ACATACAAACACACAAACGGAA 57.033 36.364 0.00 0.00 0.00 4.30
6026 8156 5.312120 ACATACAAACACACAAACGGAAA 57.688 34.783 0.00 0.00 0.00 3.13
6027 8157 5.096849 ACATACAAACACACAAACGGAAAC 58.903 37.500 0.00 0.00 0.00 2.78
6037 8167 1.064952 CAAACGGAAACACACCTGGAC 59.935 52.381 0.00 0.00 0.00 4.02
6062 9006 2.138601 GTCGTCTCGTTCGAGCGTG 61.139 63.158 21.11 18.51 37.99 5.34
6080 9024 5.352284 AGCGTGACTTGACTTAATCCTATG 58.648 41.667 0.00 0.00 0.00 2.23
6114 9060 3.946308 TGAATAGTGTCTCGACTAGCG 57.054 47.619 0.00 0.00 42.69 4.26
6115 9061 2.612672 TGAATAGTGTCTCGACTAGCGG 59.387 50.000 6.71 0.00 41.33 5.52
6128 9074 0.385751 CTAGCGGCTTGGATCGAAGA 59.614 55.000 20.36 0.00 45.75 2.87
6135 9081 2.224402 GGCTTGGATCGAAGATAAGGCT 60.224 50.000 20.36 0.00 45.12 4.58
6146 9092 0.032815 GATAAGGCTGCCTCGAGACC 59.967 60.000 23.61 9.73 30.89 3.85
6152 9098 1.684049 CTGCCTCGAGACCTCCCTT 60.684 63.158 15.71 0.00 0.00 3.95
6161 9107 1.978580 GAGACCTCCCTTCCTTTGACA 59.021 52.381 0.00 0.00 0.00 3.58
6176 9223 2.533266 TGACAGGAGAAGTGCTCAAC 57.467 50.000 0.00 0.00 45.81 3.18
6177 9224 2.042464 TGACAGGAGAAGTGCTCAACT 58.958 47.619 0.00 0.00 45.81 3.16
6178 9225 3.230976 TGACAGGAGAAGTGCTCAACTA 58.769 45.455 0.00 0.00 45.81 2.24
6182 9229 2.028567 AGGAGAAGTGCTCAACTAGTGC 60.029 50.000 0.00 0.00 45.81 4.40
6186 9233 1.342074 AGTGCTCAACTAGTGCCTCA 58.658 50.000 0.00 0.00 37.36 3.86
6193 9240 1.272490 CAACTAGTGCCTCAGGTCGAA 59.728 52.381 0.00 0.00 0.00 3.71
6196 9243 0.601558 TAGTGCCTCAGGTCGAACAC 59.398 55.000 1.87 0.00 33.07 3.32
6199 9246 0.249868 TGCCTCAGGTCGAACACAAG 60.250 55.000 1.87 0.00 0.00 3.16
6200 9247 0.951040 GCCTCAGGTCGAACACAAGG 60.951 60.000 1.87 7.35 0.00 3.61
6202 9249 0.951040 CTCAGGTCGAACACAAGGCC 60.951 60.000 1.87 0.00 0.00 5.19
6203 9250 1.227823 CAGGTCGAACACAAGGCCA 60.228 57.895 5.01 0.00 33.85 5.36
6208 9255 1.227823 CGAACACAAGGCCACCTCA 60.228 57.895 5.01 0.00 30.89 3.86
6209 9256 0.817634 CGAACACAAGGCCACCTCAA 60.818 55.000 5.01 0.00 30.89 3.02
6211 9258 1.754226 GAACACAAGGCCACCTCAAAA 59.246 47.619 5.01 0.00 30.89 2.44
6232 9279 1.541379 TCCCTCGTCATCGTTCTGAA 58.459 50.000 0.00 0.00 38.33 3.02
6233 9280 2.100197 TCCCTCGTCATCGTTCTGAAT 58.900 47.619 0.00 0.00 38.33 2.57
6244 9291 5.997746 TCATCGTTCTGAATCTTTCAAGGTT 59.002 36.000 0.00 0.00 39.58 3.50
6246 9293 6.693315 TCGTTCTGAATCTTTCAAGGTTTT 57.307 33.333 0.00 0.00 39.58 2.43
6247 9294 7.095695 TCGTTCTGAATCTTTCAAGGTTTTT 57.904 32.000 0.00 0.00 39.58 1.94
6281 9328 7.772757 AGCTACTTTATCCAAATCCTTCTCAAG 59.227 37.037 0.00 0.00 0.00 3.02
6287 9334 8.511604 TTATCCAAATCCTTCTCAAGTCATTC 57.488 34.615 0.00 0.00 0.00 2.67
6308 9355 2.363683 GAATGCCTCTCCCTTGAGTTG 58.636 52.381 0.00 0.00 39.75 3.16
6332 9379 8.484641 TGTATTCAAGTGAGAGTGAATGATTC 57.515 34.615 8.73 0.00 42.86 2.52
6412 9460 3.282021 CCATGGTGATGGTAAAGTCTGG 58.718 50.000 2.57 0.00 43.98 3.86
6413 9461 3.308402 CCATGGTGATGGTAAAGTCTGGT 60.308 47.826 2.57 0.00 43.98 4.00
6414 9462 4.335416 CATGGTGATGGTAAAGTCTGGTT 58.665 43.478 0.00 0.00 0.00 3.67
6415 9463 4.015872 TGGTGATGGTAAAGTCTGGTTC 57.984 45.455 0.00 0.00 0.00 3.62
6416 9464 3.000727 GGTGATGGTAAAGTCTGGTTCG 58.999 50.000 0.00 0.00 0.00 3.95
6417 9465 3.000727 GTGATGGTAAAGTCTGGTTCGG 58.999 50.000 0.00 0.00 0.00 4.30
6418 9466 2.635915 TGATGGTAAAGTCTGGTTCGGT 59.364 45.455 0.00 0.00 0.00 4.69
6419 9467 2.825861 TGGTAAAGTCTGGTTCGGTC 57.174 50.000 0.00 0.00 0.00 4.79
6420 9468 2.322658 TGGTAAAGTCTGGTTCGGTCT 58.677 47.619 0.00 0.00 0.00 3.85
6421 9469 2.036733 TGGTAAAGTCTGGTTCGGTCTG 59.963 50.000 0.00 0.00 0.00 3.51
6422 9470 2.612221 GGTAAAGTCTGGTTCGGTCTGG 60.612 54.545 0.00 0.00 0.00 3.86
6423 9471 1.129058 AAAGTCTGGTTCGGTCTGGT 58.871 50.000 0.00 0.00 0.00 4.00
6424 9472 2.005370 AAGTCTGGTTCGGTCTGGTA 57.995 50.000 0.00 0.00 0.00 3.25
6425 9473 1.546961 AGTCTGGTTCGGTCTGGTAG 58.453 55.000 0.00 0.00 0.00 3.18
6426 9474 1.075050 AGTCTGGTTCGGTCTGGTAGA 59.925 52.381 0.00 0.00 0.00 2.59
6427 9475 1.201880 GTCTGGTTCGGTCTGGTAGAC 59.798 57.143 0.39 0.39 44.32 2.59
6428 9476 1.075050 TCTGGTTCGGTCTGGTAGACT 59.925 52.381 8.68 0.00 44.46 3.24
6429 9477 2.306805 TCTGGTTCGGTCTGGTAGACTA 59.693 50.000 8.68 0.00 44.46 2.59
6430 9478 2.683867 CTGGTTCGGTCTGGTAGACTAG 59.316 54.545 8.68 4.36 44.46 2.57
6431 9479 2.022934 GGTTCGGTCTGGTAGACTAGG 58.977 57.143 8.68 0.38 44.46 3.02
6432 9480 2.620108 GGTTCGGTCTGGTAGACTAGGT 60.620 54.545 8.68 0.00 44.46 3.08
6433 9481 2.414994 TCGGTCTGGTAGACTAGGTG 57.585 55.000 8.68 0.00 44.46 4.00
6434 9482 1.064906 TCGGTCTGGTAGACTAGGTGG 60.065 57.143 8.68 0.00 44.46 4.61
6435 9483 1.777941 GGTCTGGTAGACTAGGTGGG 58.222 60.000 8.68 0.00 44.46 4.61
6436 9484 1.688627 GGTCTGGTAGACTAGGTGGGG 60.689 61.905 8.68 0.00 44.46 4.96
6437 9485 1.287146 GTCTGGTAGACTAGGTGGGGA 59.713 57.143 1.86 0.00 41.88 4.81
6438 9486 1.569548 TCTGGTAGACTAGGTGGGGAG 59.430 57.143 0.00 0.00 0.00 4.30
6439 9487 0.635009 TGGTAGACTAGGTGGGGAGG 59.365 60.000 0.00 0.00 0.00 4.30
6440 9488 0.105607 GGTAGACTAGGTGGGGAGGG 60.106 65.000 0.00 0.00 0.00 4.30
6441 9489 0.105607 GTAGACTAGGTGGGGAGGGG 60.106 65.000 0.00 0.00 0.00 4.79
6442 9490 0.556888 TAGACTAGGTGGGGAGGGGT 60.557 60.000 0.00 0.00 0.00 4.95
6443 9491 1.689582 GACTAGGTGGGGAGGGGTG 60.690 68.421 0.00 0.00 0.00 4.61
6444 9492 2.366972 CTAGGTGGGGAGGGGTGG 60.367 72.222 0.00 0.00 0.00 4.61
6445 9493 3.213245 TAGGTGGGGAGGGGTGGT 61.213 66.667 0.00 0.00 0.00 4.16
6446 9494 3.572715 TAGGTGGGGAGGGGTGGTG 62.573 68.421 0.00 0.00 0.00 4.17
6453 9501 4.035102 GAGGGGTGGTGCAGGGTC 62.035 72.222 0.00 0.00 0.00 4.46
6456 9504 3.661648 GGGTGGTGCAGGGTCCAT 61.662 66.667 0.00 0.00 36.09 3.41
6457 9505 2.361610 GGTGGTGCAGGGTCCATG 60.362 66.667 0.00 0.00 36.09 3.66
6458 9506 2.361610 GTGGTGCAGGGTCCATGG 60.362 66.667 4.97 4.97 36.09 3.66
6459 9507 2.858476 TGGTGCAGGGTCCATGGT 60.858 61.111 12.58 0.00 0.00 3.55
6460 9508 2.361610 GGTGCAGGGTCCATGGTG 60.362 66.667 12.58 3.41 0.00 4.17
6461 9509 2.361610 GTGCAGGGTCCATGGTGG 60.362 66.667 12.58 0.00 39.43 4.61
6462 9510 2.531428 TGCAGGGTCCATGGTGGA 60.531 61.111 12.58 0.15 45.98 4.02
6470 9518 3.503974 TCCATGGTGGACTAACCCA 57.496 52.632 12.58 0.00 42.67 4.51
6478 9526 1.053424 TGGACTAACCCACTCACACC 58.947 55.000 0.00 0.00 38.00 4.16
6479 9527 1.349067 GGACTAACCCACTCACACCT 58.651 55.000 0.00 0.00 0.00 4.00
6480 9528 1.275573 GGACTAACCCACTCACACCTC 59.724 57.143 0.00 0.00 0.00 3.85
6481 9529 1.968493 GACTAACCCACTCACACCTCA 59.032 52.381 0.00 0.00 0.00 3.86
6482 9530 2.367567 GACTAACCCACTCACACCTCAA 59.632 50.000 0.00 0.00 0.00 3.02
6483 9531 2.104281 ACTAACCCACTCACACCTCAAC 59.896 50.000 0.00 0.00 0.00 3.18
6484 9532 0.182775 AACCCACTCACACCTCAACC 59.817 55.000 0.00 0.00 0.00 3.77
6485 9533 0.694444 ACCCACTCACACCTCAACCT 60.694 55.000 0.00 0.00 0.00 3.50
6486 9534 0.474184 CCCACTCACACCTCAACCTT 59.526 55.000 0.00 0.00 0.00 3.50
6487 9535 1.133792 CCCACTCACACCTCAACCTTT 60.134 52.381 0.00 0.00 0.00 3.11
6488 9536 1.949525 CCACTCACACCTCAACCTTTG 59.050 52.381 0.00 0.00 0.00 2.77
6489 9537 1.949525 CACTCACACCTCAACCTTTGG 59.050 52.381 0.00 0.00 0.00 3.28
6490 9538 1.564348 ACTCACACCTCAACCTTTGGT 59.436 47.619 0.00 0.00 37.65 3.67
6492 9540 3.023832 CTCACACCTCAACCTTTGGTTT 58.976 45.455 0.00 0.00 44.33 3.27
6493 9541 4.204012 CTCACACCTCAACCTTTGGTTTA 58.796 43.478 0.00 0.00 44.33 2.01
6494 9542 4.204012 TCACACCTCAACCTTTGGTTTAG 58.796 43.478 0.00 1.78 44.33 1.85
6495 9543 4.080243 TCACACCTCAACCTTTGGTTTAGA 60.080 41.667 11.07 1.92 44.33 2.10
6496 9544 4.275936 CACACCTCAACCTTTGGTTTAGAG 59.724 45.833 11.07 9.87 44.33 2.43
6501 9549 6.901081 CTCAACCTTTGGTTTAGAGGAATT 57.099 37.500 5.07 0.00 44.33 2.17
6502 9550 7.290110 CTCAACCTTTGGTTTAGAGGAATTT 57.710 36.000 5.07 0.00 44.33 1.82
6503 9551 7.669089 TCAACCTTTGGTTTAGAGGAATTTT 57.331 32.000 0.00 0.00 44.33 1.82
6504 9552 7.496747 TCAACCTTTGGTTTAGAGGAATTTTG 58.503 34.615 0.00 0.00 44.33 2.44
6505 9553 7.125053 TCAACCTTTGGTTTAGAGGAATTTTGT 59.875 33.333 0.00 0.00 44.33 2.83
6506 9554 8.417884 CAACCTTTGGTTTAGAGGAATTTTGTA 58.582 33.333 0.00 0.00 44.33 2.41
6507 9555 8.178313 ACCTTTGGTTTAGAGGAATTTTGTAG 57.822 34.615 0.00 0.00 34.61 2.74
6508 9556 7.232737 ACCTTTGGTTTAGAGGAATTTTGTAGG 59.767 37.037 0.00 0.00 34.61 3.18
6509 9557 7.450323 CCTTTGGTTTAGAGGAATTTTGTAGGA 59.550 37.037 0.00 0.00 32.11 2.94
6510 9558 8.770010 TTTGGTTTAGAGGAATTTTGTAGGAA 57.230 30.769 0.00 0.00 0.00 3.36
6511 9559 8.950007 TTGGTTTAGAGGAATTTTGTAGGAAT 57.050 30.769 0.00 0.00 0.00 3.01
6512 9560 8.950007 TGGTTTAGAGGAATTTTGTAGGAATT 57.050 30.769 0.00 0.00 0.00 2.17
6513 9561 9.374711 TGGTTTAGAGGAATTTTGTAGGAATTT 57.625 29.630 0.00 0.00 0.00 1.82
6514 9562 9.856488 GGTTTAGAGGAATTTTGTAGGAATTTC 57.144 33.333 0.00 0.00 0.00 2.17
6519 9567 9.413734 AGAGGAATTTTGTAGGAATTTCATAGG 57.586 33.333 0.00 0.00 0.00 2.57
6520 9568 9.408648 GAGGAATTTTGTAGGAATTTCATAGGA 57.591 33.333 0.00 0.00 0.00 2.94
6521 9569 9.942526 AGGAATTTTGTAGGAATTTCATAGGAT 57.057 29.630 0.00 0.00 0.00 3.24
6557 9605 6.360370 GGAAAAATTCCTTTAGAGCCCTTT 57.640 37.500 1.86 0.00 46.57 3.11
6558 9606 6.166279 GGAAAAATTCCTTTAGAGCCCTTTG 58.834 40.000 1.86 0.00 46.57 2.77
6559 9607 5.745312 AAAATTCCTTTAGAGCCCTTTGG 57.255 39.130 0.00 0.00 0.00 3.28
6560 9608 4.404185 AATTCCTTTAGAGCCCTTTGGT 57.596 40.909 0.00 0.00 0.00 3.67
6561 9609 3.895704 TTCCTTTAGAGCCCTTTGGTT 57.104 42.857 0.00 0.00 0.00 3.67
6562 9610 3.895704 TCCTTTAGAGCCCTTTGGTTT 57.104 42.857 0.00 0.00 0.00 3.27
6563 9611 3.496331 TCCTTTAGAGCCCTTTGGTTTG 58.504 45.455 0.00 0.00 0.00 2.93
6564 9612 3.117284 TCCTTTAGAGCCCTTTGGTTTGT 60.117 43.478 0.00 0.00 0.00 2.83
6565 9613 4.105057 TCCTTTAGAGCCCTTTGGTTTGTA 59.895 41.667 0.00 0.00 0.00 2.41
6566 9614 4.459337 CCTTTAGAGCCCTTTGGTTTGTAG 59.541 45.833 0.00 0.00 0.00 2.74
6567 9615 2.586648 AGAGCCCTTTGGTTTGTAGG 57.413 50.000 0.00 0.00 0.00 3.18
6568 9616 2.062636 AGAGCCCTTTGGTTTGTAGGA 58.937 47.619 0.00 0.00 0.00 2.94
6569 9617 2.445525 AGAGCCCTTTGGTTTGTAGGAA 59.554 45.455 0.00 0.00 0.00 3.36
6570 9618 3.076032 AGAGCCCTTTGGTTTGTAGGAAT 59.924 43.478 0.00 0.00 0.00 3.01
6571 9619 3.165071 AGCCCTTTGGTTTGTAGGAATG 58.835 45.455 0.00 0.00 0.00 2.67
6572 9620 2.233676 GCCCTTTGGTTTGTAGGAATGG 59.766 50.000 0.00 0.00 0.00 3.16
6573 9621 3.773560 CCCTTTGGTTTGTAGGAATGGA 58.226 45.455 0.00 0.00 0.00 3.41
6574 9622 4.156477 CCCTTTGGTTTGTAGGAATGGAA 58.844 43.478 0.00 0.00 0.00 3.53
6575 9623 4.777366 CCCTTTGGTTTGTAGGAATGGAAT 59.223 41.667 0.00 0.00 0.00 3.01
6576 9624 5.105351 CCCTTTGGTTTGTAGGAATGGAATC 60.105 44.000 0.00 0.00 0.00 2.52
6577 9625 5.105351 CCTTTGGTTTGTAGGAATGGAATCC 60.105 44.000 0.00 0.00 39.96 3.01
6589 9637 6.642733 GGAATGGAATCCTATTCCTATGGA 57.357 41.667 23.95 0.29 45.66 3.41
6590 9638 6.657875 GGAATGGAATCCTATTCCTATGGAG 58.342 44.000 23.95 0.00 45.66 3.86
6591 9639 6.353429 GGAATGGAATCCTATTCCTATGGAGG 60.353 46.154 23.95 0.00 45.66 4.30
6592 9640 8.471702 GGAATGGAATCCTATTCCTATGGAGGA 61.472 44.444 23.95 0.00 45.66 3.71
6615 9663 8.840833 GGAATTCTTCCTATCCTCTACATTTC 57.159 38.462 5.23 0.00 46.57 2.17
6616 9664 8.432805 GGAATTCTTCCTATCCTCTACATTTCA 58.567 37.037 5.23 0.00 46.57 2.69
6620 9668 9.883293 TTCTTCCTATCCTCTACATTTCATAGA 57.117 33.333 0.00 0.00 0.00 1.98
6621 9669 9.883293 TCTTCCTATCCTCTACATTTCATAGAA 57.117 33.333 0.00 0.00 0.00 2.10
6644 9692 9.959721 AGAAAAATAAACATTAGCCTAGACTCA 57.040 29.630 0.00 0.00 0.00 3.41
6648 9696 9.686683 AAATAAACATTAGCCTAGACTCAATGT 57.313 29.630 0.00 0.18 40.56 2.71
6649 9697 9.686683 AATAAACATTAGCCTAGACTCAATGTT 57.313 29.630 14.71 14.71 46.39 2.71
6652 9700 9.515226 AAACATTAGCCTAGACTCAATGTTAAA 57.485 29.630 17.94 0.00 44.69 1.52
6653 9701 9.515226 AACATTAGCCTAGACTCAATGTTAAAA 57.485 29.630 16.98 0.00 44.03 1.52
6654 9702 9.515226 ACATTAGCCTAGACTCAATGTTAAAAA 57.485 29.630 0.00 0.00 36.66 1.94
6657 9705 7.631717 AGCCTAGACTCAATGTTAAAAATCC 57.368 36.000 0.00 0.00 0.00 3.01
6658 9706 7.406104 AGCCTAGACTCAATGTTAAAAATCCT 58.594 34.615 0.00 0.00 0.00 3.24
6659 9707 8.548877 AGCCTAGACTCAATGTTAAAAATCCTA 58.451 33.333 0.00 0.00 0.00 2.94
6660 9708 9.343539 GCCTAGACTCAATGTTAAAAATCCTAT 57.656 33.333 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 2.030274 GGGTGTAGCGCAACTTTTTCAT 60.030 45.455 11.47 0.00 34.56 2.57
83 93 1.523711 AATGCATCCGGGTGTAGCG 60.524 57.895 17.87 0.00 0.00 4.26
161 173 6.534793 GCACCTAAAACATTTGGTCATAATGG 59.465 38.462 0.00 0.00 37.32 3.16
200 212 5.591099 AGCTCATTTTATGTTATTTGGCCG 58.409 37.500 0.00 0.00 0.00 6.13
236 248 4.540359 TTGGATGAGCAGAATTTTTGGG 57.460 40.909 0.00 0.00 0.00 4.12
255 267 3.976942 GCTCAAACTTGTGTGCACTATTG 59.023 43.478 19.41 12.98 37.81 1.90
258 270 2.637947 TGCTCAAACTTGTGTGCACTA 58.362 42.857 19.41 4.18 41.65 2.74
296 309 3.519107 TGACATTCAAGGAGCTCCATACA 59.481 43.478 33.90 17.45 38.89 2.29
297 310 4.142609 TGACATTCAAGGAGCTCCATAC 57.857 45.455 33.90 15.39 38.89 2.39
304 317 2.231964 TGCCAAATGACATTCAAGGAGC 59.768 45.455 14.89 7.42 0.00 4.70
310 323 4.412796 TTTGGTTGCCAAATGACATTCA 57.587 36.364 9.05 0.00 46.92 2.57
341 354 8.834465 CCTGATTATGATCAAAGGTTCTAAGTG 58.166 37.037 0.00 0.00 41.55 3.16
344 357 6.772716 GGCCTGATTATGATCAAAGGTTCTAA 59.227 38.462 0.00 0.00 41.55 2.10
362 375 6.670695 AAAATCTAAACTTTGTGGCCTGAT 57.329 33.333 3.32 0.00 0.00 2.90
400 587 7.123997 TGCACCCATGATGAACAGTAAAATAAT 59.876 33.333 0.00 0.00 0.00 1.28
498 689 5.192522 ACCAAGTCTGACCCTCAATGATATT 59.807 40.000 3.76 0.00 0.00 1.28
504 695 2.338809 TGACCAAGTCTGACCCTCAAT 58.661 47.619 3.76 0.00 33.15 2.57
583 774 0.318441 CTCTCGACCTCTGCACCAAA 59.682 55.000 0.00 0.00 0.00 3.28
589 780 1.169577 TCACTTCTCTCGACCTCTGC 58.830 55.000 0.00 0.00 0.00 4.26
613 804 2.096218 ACGCGCTTCAAATTTGAGAGAC 60.096 45.455 19.64 10.99 38.61 3.36
632 823 3.769739 TTTCATCCTCCATATCCCACG 57.230 47.619 0.00 0.00 0.00 4.94
636 827 8.041323 ACGTATATGTTTTCATCCTCCATATCC 58.959 37.037 0.00 0.00 41.25 2.59
641 832 9.923143 CTAATACGTATATGTTTTCATCCTCCA 57.077 33.333 8.83 0.00 41.25 3.86
692 1050 0.968405 TCCTCACCATTTGGCTTTGC 59.032 50.000 0.00 0.00 39.32 3.68
693 1051 1.962807 TGTCCTCACCATTTGGCTTTG 59.037 47.619 0.00 0.00 39.32 2.77
694 1052 2.380064 TGTCCTCACCATTTGGCTTT 57.620 45.000 0.00 0.00 39.32 3.51
790 1148 7.611467 TGCATTACAATAAGAACATTCAGTCCT 59.389 33.333 0.00 0.00 0.00 3.85
847 1205 8.711457 CCGCATTCTTTTTGTTATTCAGAAAAT 58.289 29.630 0.00 0.00 31.40 1.82
858 1216 3.938334 AGCAAAACCGCATTCTTTTTGTT 59.062 34.783 7.61 0.00 40.70 2.83
860 1218 3.555139 TCAGCAAAACCGCATTCTTTTTG 59.445 39.130 0.00 0.00 41.26 2.44
865 1242 1.203052 CCATCAGCAAAACCGCATTCT 59.797 47.619 0.00 0.00 0.00 2.40
866 1243 1.202114 TCCATCAGCAAAACCGCATTC 59.798 47.619 0.00 0.00 0.00 2.67
891 1268 2.323105 CGCGCAAACGTCTTGTGT 59.677 55.556 8.75 0.00 42.83 3.72
892 1269 3.085010 GCGCGCAAACGTCTTGTG 61.085 61.111 29.10 15.23 42.83 3.33
908 1285 3.812053 CACTGCAGATTTATAGACAGGGC 59.188 47.826 23.35 0.00 0.00 5.19
912 1289 3.199727 TGGCCACTGCAGATTTATAGACA 59.800 43.478 23.35 5.78 40.13 3.41
915 1292 3.562973 CACTGGCCACTGCAGATTTATAG 59.437 47.826 23.35 13.05 40.13 1.31
928 1305 2.597510 GTTCCACCCACTGGCCAC 60.598 66.667 0.00 0.00 40.39 5.01
939 1319 0.804989 CCGAGCTTCCATTGTTCCAC 59.195 55.000 0.00 0.00 0.00 4.02
947 1327 2.823154 GCTACTATCTCCGAGCTTCCAT 59.177 50.000 0.00 0.00 32.04 3.41
957 1337 3.506455 TGATGGTAAGCGCTACTATCTCC 59.494 47.826 26.92 17.01 44.73 3.71
972 1352 5.554070 CTGCTGATGATAATGGTGATGGTA 58.446 41.667 0.00 0.00 0.00 3.25
1017 1403 2.347114 CCACTGCCATGGACGACA 59.653 61.111 18.40 2.27 43.02 4.35
1018 1404 2.034879 CACCACTGCCATGGACGAC 61.035 63.158 18.40 0.00 43.02 4.34
1037 1423 2.433604 TCATCTCCCTCATGAAGCTCAC 59.566 50.000 0.00 0.00 0.00 3.51
1038 1424 2.699321 CTCATCTCCCTCATGAAGCTCA 59.301 50.000 0.00 0.00 29.74 4.26
1047 1433 1.203300 TGGTGTTCCTCATCTCCCTCA 60.203 52.381 0.00 0.00 34.23 3.86
1062 1448 2.592574 TCGACGTCGAGGTGGTGT 60.593 61.111 34.97 0.00 44.22 4.16
1093 1479 1.742761 CTCCTCATCGTTGTGCCATT 58.257 50.000 0.00 0.00 0.00 3.16
1094 1480 0.745845 GCTCCTCATCGTTGTGCCAT 60.746 55.000 0.00 0.00 0.00 4.40
1106 1492 0.969149 CACCTGTGTACTGCTCCTCA 59.031 55.000 0.00 0.00 0.00 3.86
1109 1495 0.679505 TGTCACCTGTGTACTGCTCC 59.320 55.000 0.00 0.00 0.00 4.70
1146 1532 2.962827 GACGTCGAGCGACACCAGA 61.963 63.158 21.09 0.00 44.77 3.86
1149 1535 1.796749 GAAGACGTCGAGCGACACC 60.797 63.158 21.09 12.29 44.77 4.16
1215 1601 3.838244 TGTGACCAATACTCTATGGGC 57.162 47.619 0.00 0.00 45.54 5.36
1245 1631 4.160642 TGCATGAAGCTATGAGTTCCAT 57.839 40.909 0.00 0.00 45.94 3.41
1336 1730 5.750484 TTTTTATGTGTAGTGCGTCGTAG 57.250 39.130 0.00 0.00 0.00 3.51
1343 1737 9.352784 TCTTTTGCATATTTTTATGTGTAGTGC 57.647 29.630 0.00 0.00 0.00 4.40
1361 1755 4.811969 ATGCCAAATCATCTCTTTTGCA 57.188 36.364 0.00 0.00 32.68 4.08
1387 1781 7.362234 ACCTTATAAAATAAGGGCCAGAATGT 58.638 34.615 23.20 3.34 46.31 2.71
1429 1826 7.283807 ACGGAATTTTGTTGGTCTAAGTAAAGT 59.716 33.333 0.00 0.00 0.00 2.66
1433 1830 5.406175 CGACGGAATTTTGTTGGTCTAAGTA 59.594 40.000 0.00 0.00 0.00 2.24
1530 1927 5.456186 GCTAGGACCAGGCCATAAGAAATAA 60.456 44.000 5.01 0.00 0.00 1.40
1543 1940 2.101582 GTGTCATAGTGCTAGGACCAGG 59.898 54.545 17.69 0.00 43.78 4.45
1564 1961 5.516339 AGAACAACAAAAATCAAAGACAGCG 59.484 36.000 0.00 0.00 0.00 5.18
1566 1963 8.243289 ACAAGAACAACAAAAATCAAAGACAG 57.757 30.769 0.00 0.00 0.00 3.51
1574 1976 5.465390 GGCCCTTACAAGAACAACAAAAATC 59.535 40.000 0.00 0.00 0.00 2.17
1575 1977 5.130311 AGGCCCTTACAAGAACAACAAAAAT 59.870 36.000 0.00 0.00 0.00 1.82
1578 1980 3.634910 GAGGCCCTTACAAGAACAACAAA 59.365 43.478 0.00 0.00 0.00 2.83
1587 1989 0.461961 CGAGGAGAGGCCCTTACAAG 59.538 60.000 0.00 0.00 36.49 3.16
1634 2036 8.664798 TCACGAGTTATTAATTTCATGTTGGAG 58.335 33.333 0.00 0.00 0.00 3.86
1714 2120 5.163141 TGGAGGTCCAAAGATTTCAGTGTTA 60.163 40.000 0.00 0.00 44.35 2.41
1739 2145 5.276348 GCAGTTTCTTCCAAACAATGTTTCG 60.276 40.000 8.59 2.49 32.81 3.46
1838 2244 9.106070 AGTTGTAACACTGTTTTTCTAGTTAGG 57.894 33.333 0.00 0.00 0.00 2.69
1854 2260 2.221055 CGTGGCTTCTGAGTTGTAACAC 59.779 50.000 0.00 0.00 0.00 3.32
1879 2285 9.541884 AGAGGTAAAAATTAATTTTGAGGCCTA 57.458 29.630 23.34 10.57 41.29 3.93
1880 2286 8.435931 AGAGGTAAAAATTAATTTTGAGGCCT 57.564 30.769 23.34 23.50 41.29 5.19
1881 2287 7.764443 GGAGAGGTAAAAATTAATTTTGAGGCC 59.236 37.037 23.34 20.38 41.29 5.19
2080 2488 5.014858 AGCACTAGTAGTACTTTGTAGGCA 58.985 41.667 8.40 0.00 0.00 4.75
2234 2645 6.332630 GCATGTGTATTTACCTTGAAGCAAT 58.667 36.000 0.00 0.00 0.00 3.56
2264 2675 2.107950 TTGTGATGAAGGCCGTTAGG 57.892 50.000 0.00 0.00 41.62 2.69
2268 2679 2.513753 TCAAATTGTGATGAAGGCCGT 58.486 42.857 0.00 0.00 0.00 5.68
2269 2680 3.788333 ATCAAATTGTGATGAAGGCCG 57.212 42.857 0.00 0.00 45.69 6.13
2271 2682 7.384660 TGTTTGTAATCAAATTGTGATGAAGGC 59.615 33.333 0.00 0.00 46.80 4.35
2370 2818 7.524912 GCATGATTACCTCTAATGCAACTATG 58.475 38.462 0.00 0.00 42.48 2.23
2443 2891 9.899661 GGGTTTTAGCCCTTTATTTAATTTGAT 57.100 29.630 0.00 0.00 45.22 2.57
2787 3240 7.148474 CCCATTAACCGTATCTTTCCAATATCG 60.148 40.741 0.00 0.00 0.00 2.92
2796 3249 5.431179 AGACACCCATTAACCGTATCTTT 57.569 39.130 0.00 0.00 0.00 2.52
3041 3500 0.107643 GAGCCTATGCCACCTTCTCC 59.892 60.000 0.00 0.00 38.69 3.71
3078 3537 3.823873 TCACAACTGGCATCGGTATTTTT 59.176 39.130 0.00 0.00 0.00 1.94
3095 3554 3.324846 AGGTCAGTGTCTTATGCTCACAA 59.675 43.478 0.00 0.00 34.94 3.33
3106 3565 6.420913 ACAAGTTTGTATAGGTCAGTGTCT 57.579 37.500 0.00 0.00 40.16 3.41
3107 3566 6.482308 ACAACAAGTTTGTATAGGTCAGTGTC 59.518 38.462 0.00 0.00 41.31 3.67
3196 3655 3.971245 ACCCACAAGACTTTGCAAAAA 57.029 38.095 13.84 0.00 37.85 1.94
3201 3660 3.004419 GGACTAAACCCACAAGACTTTGC 59.996 47.826 0.00 0.00 37.85 3.68
3202 3661 4.461198 AGGACTAAACCCACAAGACTTTG 58.539 43.478 0.00 0.00 40.24 2.77
3203 3662 4.165372 TGAGGACTAAACCCACAAGACTTT 59.835 41.667 0.00 0.00 0.00 2.66
3276 3736 5.770162 TGAGTCCGATGATGTGACACTATAT 59.230 40.000 7.20 0.00 0.00 0.86
3281 3741 2.654749 TGAGTCCGATGATGTGACAC 57.345 50.000 0.00 0.00 0.00 3.67
3309 3769 6.321181 AGAAGTGAAAGCTTACCACAAAATGA 59.679 34.615 24.71 0.00 33.53 2.57
3345 3805 7.391148 AAATGCATACAAATACGAAAGGACT 57.609 32.000 0.00 0.00 0.00 3.85
3469 3936 5.063204 TGCTGGATTCCAAATATACTTCGG 58.937 41.667 6.88 0.00 30.80 4.30
3611 4079 6.516739 AAGATGAGAGAACTTGTCACGATA 57.483 37.500 0.00 0.00 0.00 2.92
3612 4080 5.398603 AAGATGAGAGAACTTGTCACGAT 57.601 39.130 0.00 0.00 0.00 3.73
3658 4126 0.616395 TGTTGGGGGAGTCGATGCTA 60.616 55.000 0.00 0.00 0.00 3.49
3759 4227 1.126488 TGGCTAGCTGAGGAAGATGG 58.874 55.000 15.72 0.00 0.00 3.51
3772 4240 5.735354 GCATCTTCAATTGGTCAATGGCTAG 60.735 44.000 5.42 0.00 0.00 3.42
3919 4387 4.041444 GCTGATATTCTGGTGAGGGAGAAT 59.959 45.833 0.00 0.00 41.01 2.40
3924 4392 3.853355 AAGCTGATATTCTGGTGAGGG 57.147 47.619 0.00 0.00 0.00 4.30
3937 4635 5.243283 GCCATCATATGAAAGGAAAGCTGAT 59.757 40.000 24.26 0.00 0.00 2.90
3942 4640 6.220930 CAATGGCCATCATATGAAAGGAAAG 58.779 40.000 21.08 9.92 34.44 2.62
3951 4649 7.177921 AGAGTAAAATCCAATGGCCATCATATG 59.822 37.037 21.08 13.60 34.44 1.78
4023 4721 5.443185 TTTTCCTCATTTGAGACAAGCAG 57.557 39.130 9.15 0.00 44.74 4.24
4045 4743 7.781324 ACTGAATCACCCATGAAAGTAATTT 57.219 32.000 0.00 0.00 38.69 1.82
4046 4744 7.781324 AACTGAATCACCCATGAAAGTAATT 57.219 32.000 0.00 0.00 38.69 1.40
4051 4749 5.458041 ACAAACTGAATCACCCATGAAAG 57.542 39.130 0.00 0.00 38.69 2.62
4088 4786 2.016318 TCTGGGCATTTCATAGCAACG 58.984 47.619 0.00 0.00 0.00 4.10
4103 4801 0.040204 AAATTGGGCTGGTCTCTGGG 59.960 55.000 0.00 0.00 0.00 4.45
4114 4812 2.682836 ACGCATAACAACAAATTGGGC 58.317 42.857 0.00 0.00 40.42 5.36
4164 4864 6.358294 CACGAATGATGTAGAGTTAGTCATCG 59.642 42.308 0.00 0.00 39.33 3.84
4170 4870 4.742167 CCTGCACGAATGATGTAGAGTTAG 59.258 45.833 0.00 0.00 32.03 2.34
4339 5040 6.040729 CCCAAAGCACATCATTAATCATGGTA 59.959 38.462 4.24 0.00 33.07 3.25
4341 5042 5.294356 CCCAAAGCACATCATTAATCATGG 58.706 41.667 4.24 0.00 33.07 3.66
4354 5055 2.666272 TATGTCAACCCCAAAGCACA 57.334 45.000 0.00 0.00 0.00 4.57
4358 5059 2.824936 TGCACATATGTCAACCCCAAAG 59.175 45.455 5.07 0.00 0.00 2.77
4362 5063 1.392589 CCTGCACATATGTCAACCCC 58.607 55.000 5.07 0.00 0.00 4.95
4383 5084 1.308047 AGTGACTTGTTCATGCGCAA 58.692 45.000 17.11 0.00 36.32 4.85
4388 5089 9.295214 CTAAGACTGTATAGTGACTTGTTCATG 57.705 37.037 0.00 0.00 37.25 3.07
4560 5411 7.543868 AGAGTTGAGAGATGAAATGTAAACTCG 59.456 37.037 0.00 0.00 38.52 4.18
4696 5547 6.809869 AGCTTTTTGTATGCTTTCTTGAAGT 58.190 32.000 0.00 0.00 37.69 3.01
4784 5635 8.610369 AGTTTTCTCCTTCTCCTCAATTTCTAT 58.390 33.333 0.00 0.00 0.00 1.98
4824 5675 8.077386 GTCGAAACCACAATGTTCCTAATTTAA 58.923 33.333 0.00 0.00 0.00 1.52
4959 5810 7.556275 GGATAATGTGAAAGTGGTTTCCTATGA 59.444 37.037 0.00 0.00 41.37 2.15
4989 5840 1.413118 TGAGGCTATTCTGCGGATGA 58.587 50.000 0.00 0.00 0.00 2.92
5004 5855 4.186926 CCAGACACATTACACTCATGAGG 58.813 47.826 26.08 16.86 0.00 3.86
5127 5980 5.839063 TGTTTCTCAGTTTCCTCTCCTCTAA 59.161 40.000 0.00 0.00 0.00 2.10
5133 5986 5.917447 GCATTTTGTTTCTCAGTTTCCTCTC 59.083 40.000 0.00 0.00 0.00 3.20
5174 6039 0.179020 TGTTCAAGACAGTGCCCCAG 60.179 55.000 0.00 0.00 33.40 4.45
5178 6043 2.223782 TGCAAATGTTCAAGACAGTGCC 60.224 45.455 12.30 0.00 45.65 5.01
5198 6063 0.604780 CAGGACTGAACTGTGCCCTG 60.605 60.000 0.00 0.00 35.75 4.45
5225 6090 5.220835 CGCAATCCAAGCATTTACATCTACA 60.221 40.000 0.00 0.00 0.00 2.74
5226 6091 5.207768 CGCAATCCAAGCATTTACATCTAC 58.792 41.667 0.00 0.00 0.00 2.59
5227 6092 4.261155 GCGCAATCCAAGCATTTACATCTA 60.261 41.667 0.30 0.00 0.00 1.98
5271 7361 3.551485 GCGCATGACAAAACTTGTTTCTT 59.449 39.130 0.30 0.00 45.52 2.52
5272 7362 3.115554 GCGCATGACAAAACTTGTTTCT 58.884 40.909 0.30 0.00 45.52 2.52
5273 7363 2.857152 TGCGCATGACAAAACTTGTTTC 59.143 40.909 5.66 0.00 45.52 2.78
5277 7367 1.722464 CCATGCGCATGACAAAACTTG 59.278 47.619 43.71 23.88 41.20 3.16
5320 7410 9.167311 GTACATAAAATGGAGAGAATCAAGTGT 57.833 33.333 0.00 0.00 33.15 3.55
5361 7451 1.549203 AACCGTACACGTCCACCTAT 58.451 50.000 0.58 0.00 37.74 2.57
5522 7612 5.773176 TGGAAAAGAAGGTATTGAAGGGAAC 59.227 40.000 0.00 0.00 0.00 3.62
5526 7616 5.570320 TCCTGGAAAAGAAGGTATTGAAGG 58.430 41.667 0.00 0.00 34.94 3.46
5605 7711 3.928375 GACAAAAAGCGATGGCATCAATT 59.072 39.130 25.88 16.58 43.41 2.32
5613 7719 2.050691 CAAACCGACAAAAAGCGATGG 58.949 47.619 0.00 0.00 0.00 3.51
5628 7734 4.976987 TCAACTGTTCGAGAAAACAAACC 58.023 39.130 0.00 0.00 38.60 3.27
5678 7784 2.878406 GTTGAACTAGCTTGCAACTGGA 59.122 45.455 15.56 0.00 38.03 3.86
5783 7890 6.957920 TCAAACATTGAATCTCCTTTGTGA 57.042 33.333 0.00 0.00 36.59 3.58
5785 7892 7.729116 ACAATCAAACATTGAATCTCCTTTGT 58.271 30.769 1.36 0.00 43.95 2.83
5806 7913 7.280428 CAGATGATGAGAGCTCAACTTTACAAT 59.720 37.037 17.77 0.00 43.58 2.71
5811 7918 4.515361 CCAGATGATGAGAGCTCAACTTT 58.485 43.478 17.77 0.00 43.58 2.66
5838 7945 7.553881 ACCATTACTTAACACATGCTATCAC 57.446 36.000 0.00 0.00 0.00 3.06
5893 8000 9.462174 AAATCACAACAAAATACACATACACAG 57.538 29.630 0.00 0.00 0.00 3.66
5930 8040 4.868734 CGGCGAAGAATCTTAAACTACCTT 59.131 41.667 0.00 0.00 0.00 3.50
5933 8043 8.566008 TTATACGGCGAAGAATCTTAAACTAC 57.434 34.615 16.62 0.00 0.00 2.73
5935 8045 7.486647 TCTTATACGGCGAAGAATCTTAAACT 58.513 34.615 16.62 0.00 0.00 2.66
5936 8046 7.434602 ACTCTTATACGGCGAAGAATCTTAAAC 59.565 37.037 16.62 0.00 31.46 2.01
5939 8049 6.630444 ACTCTTATACGGCGAAGAATCTTA 57.370 37.500 16.62 0.00 31.46 2.10
5953 8063 4.098196 AGGTCGGAAGCTGAACTCTTATAC 59.902 45.833 0.00 0.00 29.75 1.47
5955 8065 3.100671 AGGTCGGAAGCTGAACTCTTAT 58.899 45.455 0.00 0.00 29.75 1.73
5972 8102 3.315470 TGTACATCTACGATGCAGAGGTC 59.685 47.826 3.88 0.00 38.04 3.85
5997 8127 3.775202 TGTGTGTTTGTATGTTGTTGGC 58.225 40.909 0.00 0.00 0.00 4.52
6015 8145 1.202245 CCAGGTGTGTTTCCGTTTGTG 60.202 52.381 0.00 0.00 0.00 3.33
6017 8147 1.064952 GTCCAGGTGTGTTTCCGTTTG 59.935 52.381 0.00 0.00 0.00 2.93
6018 8148 1.340211 TGTCCAGGTGTGTTTCCGTTT 60.340 47.619 0.00 0.00 0.00 3.60
6019 8149 0.253610 TGTCCAGGTGTGTTTCCGTT 59.746 50.000 0.00 0.00 0.00 4.44
6020 8150 0.472471 ATGTCCAGGTGTGTTTCCGT 59.528 50.000 0.00 0.00 0.00 4.69
6021 8151 1.266718 CAATGTCCAGGTGTGTTTCCG 59.733 52.381 0.00 0.00 0.00 4.30
6022 8152 2.306847 ACAATGTCCAGGTGTGTTTCC 58.693 47.619 0.00 0.00 0.00 3.13
6023 8153 3.130340 ACAACAATGTCCAGGTGTGTTTC 59.870 43.478 0.00 0.00 33.41 2.78
6024 8154 3.096092 ACAACAATGTCCAGGTGTGTTT 58.904 40.909 0.00 0.00 33.41 2.83
6025 8155 2.733956 ACAACAATGTCCAGGTGTGTT 58.266 42.857 0.00 0.00 33.41 3.32
6026 8156 2.435372 ACAACAATGTCCAGGTGTGT 57.565 45.000 0.00 0.00 33.41 3.72
6037 8167 2.048498 TCGAACGAGACGACAACAATG 58.952 47.619 0.00 0.00 34.85 2.82
6049 8179 0.385598 TCAAGTCACGCTCGAACGAG 60.386 55.000 16.16 18.11 44.56 4.18
6050 8180 0.659417 GTCAAGTCACGCTCGAACGA 60.659 55.000 16.16 0.00 36.70 3.85
6051 8181 0.660595 AGTCAAGTCACGCTCGAACG 60.661 55.000 6.68 6.68 39.50 3.95
6062 9006 6.650120 TCCCAACATAGGATTAAGTCAAGTC 58.350 40.000 0.00 0.00 0.00 3.01
6080 9024 5.930135 ACACTATTCATCACCTATCCCAAC 58.070 41.667 0.00 0.00 0.00 3.77
6114 9060 2.147150 GCCTTATCTTCGATCCAAGCC 58.853 52.381 0.00 0.00 0.00 4.35
6115 9061 2.805099 CAGCCTTATCTTCGATCCAAGC 59.195 50.000 0.00 0.00 0.00 4.01
6128 9074 0.397816 AGGTCTCGAGGCAGCCTTAT 60.398 55.000 20.37 0.00 31.76 1.73
6135 9081 1.682684 GAAGGGAGGTCTCGAGGCA 60.683 63.158 20.37 0.00 0.00 4.75
6161 9107 2.028567 GCACTAGTTGAGCACTTCTCCT 60.029 50.000 0.00 0.00 41.18 3.69
6176 9223 0.888619 TGTTCGACCTGAGGCACTAG 59.111 55.000 0.00 0.00 41.55 2.57
6177 9224 0.601558 GTGTTCGACCTGAGGCACTA 59.398 55.000 0.00 0.00 41.55 2.74
6182 9229 0.951040 GCCTTGTGTTCGACCTGAGG 60.951 60.000 0.00 0.00 0.00 3.86
6186 9233 1.227853 GTGGCCTTGTGTTCGACCT 60.228 57.895 3.32 0.00 0.00 3.85
6193 9240 2.086610 ATTTTGAGGTGGCCTTGTGT 57.913 45.000 3.32 0.00 31.76 3.72
6196 9243 1.276138 GGGAATTTTGAGGTGGCCTTG 59.724 52.381 3.32 0.00 31.76 3.61
6199 9246 1.186200 GAGGGAATTTTGAGGTGGCC 58.814 55.000 0.00 0.00 0.00 5.36
6200 9247 0.811281 CGAGGGAATTTTGAGGTGGC 59.189 55.000 0.00 0.00 0.00 5.01
6202 9249 2.778299 TGACGAGGGAATTTTGAGGTG 58.222 47.619 0.00 0.00 0.00 4.00
6203 9250 3.610911 GATGACGAGGGAATTTTGAGGT 58.389 45.455 0.00 0.00 0.00 3.85
6208 9255 3.684788 CAGAACGATGACGAGGGAATTTT 59.315 43.478 0.00 0.00 42.66 1.82
6209 9256 3.056107 TCAGAACGATGACGAGGGAATTT 60.056 43.478 0.00 0.00 42.66 1.82
6211 9258 2.100197 TCAGAACGATGACGAGGGAAT 58.900 47.619 0.00 0.00 42.66 3.01
6244 9291 8.630054 TTGGATAAAGTAGCTAGCTTCAAAAA 57.370 30.769 24.88 0.00 0.00 1.94
6246 9293 8.807948 ATTTGGATAAAGTAGCTAGCTTCAAA 57.192 30.769 24.88 14.14 0.00 2.69
6247 9294 7.499232 GGATTTGGATAAAGTAGCTAGCTTCAA 59.501 37.037 24.88 4.93 0.00 2.69
6281 9328 1.139853 AGGGAGAGGCATTCGAATGAC 59.860 52.381 36.10 34.35 44.99 3.06
6287 9334 0.539051 ACTCAAGGGAGAGGCATTCG 59.461 55.000 0.00 0.00 44.26 3.34
6308 9355 7.550551 TGGAATCATTCACTCTCACTTGAATAC 59.449 37.037 0.00 0.00 39.86 1.89
6408 9456 1.075050 AGTCTACCAGACCGAACCAGA 59.925 52.381 2.74 0.00 46.18 3.86
6409 9457 1.546961 AGTCTACCAGACCGAACCAG 58.453 55.000 2.74 0.00 46.18 4.00
6410 9458 2.619849 CCTAGTCTACCAGACCGAACCA 60.620 54.545 2.74 0.00 46.18 3.67
6411 9459 2.022934 CCTAGTCTACCAGACCGAACC 58.977 57.143 2.74 0.00 46.18 3.62
6412 9460 2.422832 CACCTAGTCTACCAGACCGAAC 59.577 54.545 2.74 0.00 46.18 3.95
6413 9461 2.619849 CCACCTAGTCTACCAGACCGAA 60.620 54.545 2.74 0.00 46.18 4.30
6414 9462 1.064906 CCACCTAGTCTACCAGACCGA 60.065 57.143 2.74 0.00 46.18 4.69
6415 9463 1.390565 CCACCTAGTCTACCAGACCG 58.609 60.000 2.74 0.00 46.18 4.79
6416 9464 1.688627 CCCCACCTAGTCTACCAGACC 60.689 61.905 2.74 0.00 46.18 3.85
6417 9465 1.287146 TCCCCACCTAGTCTACCAGAC 59.713 57.143 0.00 0.00 45.38 3.51
6418 9466 1.569548 CTCCCCACCTAGTCTACCAGA 59.430 57.143 0.00 0.00 0.00 3.86
6419 9467 1.411787 CCTCCCCACCTAGTCTACCAG 60.412 61.905 0.00 0.00 0.00 4.00
6420 9468 0.635009 CCTCCCCACCTAGTCTACCA 59.365 60.000 0.00 0.00 0.00 3.25
6421 9469 0.105607 CCCTCCCCACCTAGTCTACC 60.106 65.000 0.00 0.00 0.00 3.18
6422 9470 0.105607 CCCCTCCCCACCTAGTCTAC 60.106 65.000 0.00 0.00 0.00 2.59
6423 9471 0.556888 ACCCCTCCCCACCTAGTCTA 60.557 60.000 0.00 0.00 0.00 2.59
6424 9472 1.867487 ACCCCTCCCCACCTAGTCT 60.867 63.158 0.00 0.00 0.00 3.24
6425 9473 1.689582 CACCCCTCCCCACCTAGTC 60.690 68.421 0.00 0.00 0.00 2.59
6426 9474 2.454941 CACCCCTCCCCACCTAGT 59.545 66.667 0.00 0.00 0.00 2.57
6427 9475 2.366972 CCACCCCTCCCCACCTAG 60.367 72.222 0.00 0.00 0.00 3.02
6428 9476 3.213245 ACCACCCCTCCCCACCTA 61.213 66.667 0.00 0.00 0.00 3.08
6436 9484 4.035102 GACCCTGCACCACCCCTC 62.035 72.222 0.00 0.00 0.00 4.30
6439 9487 3.661648 ATGGACCCTGCACCACCC 61.662 66.667 0.00 0.00 39.06 4.61
6440 9488 2.361610 CATGGACCCTGCACCACC 60.362 66.667 0.00 0.00 39.06 4.61
6441 9489 2.361610 CCATGGACCCTGCACCAC 60.362 66.667 5.56 0.00 39.06 4.16
6442 9490 2.858476 ACCATGGACCCTGCACCA 60.858 61.111 21.47 0.00 40.57 4.17
6443 9491 2.361610 CACCATGGACCCTGCACC 60.362 66.667 21.47 0.00 0.00 5.01
6444 9492 2.361610 CCACCATGGACCCTGCAC 60.362 66.667 21.47 0.00 40.96 4.57
6445 9493 2.531428 TCCACCATGGACCCTGCA 60.531 61.111 21.47 0.00 42.67 4.41
6452 9500 3.503974 TGGGTTAGTCCACCATGGA 57.496 52.632 21.47 0.00 45.98 3.41
6459 9507 1.053424 GGTGTGAGTGGGTTAGTCCA 58.947 55.000 0.00 0.00 38.11 4.02
6460 9508 1.275573 GAGGTGTGAGTGGGTTAGTCC 59.724 57.143 0.00 0.00 0.00 3.85
6461 9509 1.968493 TGAGGTGTGAGTGGGTTAGTC 59.032 52.381 0.00 0.00 0.00 2.59
6462 9510 2.097110 TGAGGTGTGAGTGGGTTAGT 57.903 50.000 0.00 0.00 0.00 2.24
6463 9511 2.550208 GGTTGAGGTGTGAGTGGGTTAG 60.550 54.545 0.00 0.00 0.00 2.34
6464 9512 1.418637 GGTTGAGGTGTGAGTGGGTTA 59.581 52.381 0.00 0.00 0.00 2.85
6465 9513 0.182775 GGTTGAGGTGTGAGTGGGTT 59.817 55.000 0.00 0.00 0.00 4.11
6466 9514 0.694444 AGGTTGAGGTGTGAGTGGGT 60.694 55.000 0.00 0.00 0.00 4.51
6467 9515 0.474184 AAGGTTGAGGTGTGAGTGGG 59.526 55.000 0.00 0.00 0.00 4.61
6468 9516 1.949525 CAAAGGTTGAGGTGTGAGTGG 59.050 52.381 0.00 0.00 0.00 4.00
6469 9517 1.949525 CCAAAGGTTGAGGTGTGAGTG 59.050 52.381 0.00 0.00 0.00 3.51
6470 9518 1.564348 ACCAAAGGTTGAGGTGTGAGT 59.436 47.619 0.00 0.00 33.57 3.41
6471 9519 2.348411 ACCAAAGGTTGAGGTGTGAG 57.652 50.000 0.00 0.00 33.57 3.51
6472 9520 2.818751 AACCAAAGGTTGAGGTGTGA 57.181 45.000 0.00 0.00 45.07 3.58
6473 9521 4.204012 TCTAAACCAAAGGTTGAGGTGTG 58.796 43.478 12.30 0.00 46.20 3.82
6474 9522 4.461198 CTCTAAACCAAAGGTTGAGGTGT 58.539 43.478 12.30 0.00 46.20 4.16
6475 9523 3.821033 CCTCTAAACCAAAGGTTGAGGTG 59.179 47.826 19.58 11.20 46.20 4.00
6476 9524 3.720002 TCCTCTAAACCAAAGGTTGAGGT 59.280 43.478 23.67 5.88 46.85 3.85
6478 9526 6.901081 AATTCCTCTAAACCAAAGGTTGAG 57.099 37.500 6.92 6.92 46.20 3.02
6479 9527 7.125053 ACAAAATTCCTCTAAACCAAAGGTTGA 59.875 33.333 1.62 0.00 46.20 3.18
6480 9528 7.272244 ACAAAATTCCTCTAAACCAAAGGTTG 58.728 34.615 1.62 0.00 46.20 3.77
6482 9530 7.232737 CCTACAAAATTCCTCTAAACCAAAGGT 59.767 37.037 0.00 0.00 37.65 3.50
6483 9531 7.450323 TCCTACAAAATTCCTCTAAACCAAAGG 59.550 37.037 0.00 0.00 0.00 3.11
6484 9532 8.404107 TCCTACAAAATTCCTCTAAACCAAAG 57.596 34.615 0.00 0.00 0.00 2.77
6485 9533 8.770010 TTCCTACAAAATTCCTCTAAACCAAA 57.230 30.769 0.00 0.00 0.00 3.28
6486 9534 8.950007 ATTCCTACAAAATTCCTCTAAACCAA 57.050 30.769 0.00 0.00 0.00 3.67
6487 9535 8.950007 AATTCCTACAAAATTCCTCTAAACCA 57.050 30.769 0.00 0.00 0.00 3.67
6488 9536 9.856488 GAAATTCCTACAAAATTCCTCTAAACC 57.144 33.333 0.00 0.00 0.00 3.27
6493 9541 9.413734 CCTATGAAATTCCTACAAAATTCCTCT 57.586 33.333 0.00 0.00 0.00 3.69
6494 9542 9.408648 TCCTATGAAATTCCTACAAAATTCCTC 57.591 33.333 0.00 0.00 0.00 3.71
6495 9543 9.942526 ATCCTATGAAATTCCTACAAAATTCCT 57.057 29.630 0.00 0.00 0.00 3.36
6534 9582 9.104410 ACCAAAGGGCTCTAAAGGAATTTTTCC 62.104 40.741 5.94 0.00 44.02 3.13
6535 9583 6.166279 CCAAAGGGCTCTAAAGGAATTTTTC 58.834 40.000 0.00 0.00 0.00 2.29
6536 9584 5.606749 ACCAAAGGGCTCTAAAGGAATTTTT 59.393 36.000 5.94 0.00 37.90 1.94
6537 9585 5.155161 ACCAAAGGGCTCTAAAGGAATTTT 58.845 37.500 5.94 0.00 37.90 1.82
6538 9586 4.752063 ACCAAAGGGCTCTAAAGGAATTT 58.248 39.130 5.94 0.00 37.90 1.82
6539 9587 4.404185 ACCAAAGGGCTCTAAAGGAATT 57.596 40.909 5.94 0.00 37.90 2.17
6540 9588 4.404185 AACCAAAGGGCTCTAAAGGAAT 57.596 40.909 5.94 0.00 37.90 3.01
6541 9589 3.895041 CAAACCAAAGGGCTCTAAAGGAA 59.105 43.478 5.94 0.00 37.90 3.36
6542 9590 3.117284 ACAAACCAAAGGGCTCTAAAGGA 60.117 43.478 5.94 0.00 37.90 3.36
6543 9591 3.230976 ACAAACCAAAGGGCTCTAAAGG 58.769 45.455 0.00 0.00 37.90 3.11
6544 9592 4.459337 CCTACAAACCAAAGGGCTCTAAAG 59.541 45.833 0.00 0.00 37.90 1.85
6545 9593 4.105057 TCCTACAAACCAAAGGGCTCTAAA 59.895 41.667 0.00 0.00 37.90 1.85
6546 9594 3.653836 TCCTACAAACCAAAGGGCTCTAA 59.346 43.478 0.00 0.00 37.90 2.10
6547 9595 3.253220 TCCTACAAACCAAAGGGCTCTA 58.747 45.455 0.00 0.00 37.90 2.43
6548 9596 2.062636 TCCTACAAACCAAAGGGCTCT 58.937 47.619 0.00 0.00 37.90 4.09
6549 9597 2.579410 TCCTACAAACCAAAGGGCTC 57.421 50.000 0.00 0.00 37.90 4.70
6550 9598 3.165071 CATTCCTACAAACCAAAGGGCT 58.835 45.455 0.00 0.00 37.90 5.19
6551 9599 2.233676 CCATTCCTACAAACCAAAGGGC 59.766 50.000 0.00 0.00 37.90 5.19
6552 9600 3.773560 TCCATTCCTACAAACCAAAGGG 58.226 45.455 0.00 0.00 41.29 3.95
6553 9601 5.105351 GGATTCCATTCCTACAAACCAAAGG 60.105 44.000 0.00 0.00 32.68 3.11
6554 9602 5.716703 AGGATTCCATTCCTACAAACCAAAG 59.283 40.000 5.29 0.00 44.50 2.77
6555 9603 5.650283 AGGATTCCATTCCTACAAACCAAA 58.350 37.500 5.29 0.00 44.50 3.28
6556 9604 5.269554 AGGATTCCATTCCTACAAACCAA 57.730 39.130 5.29 0.00 44.50 3.67
6557 9605 4.946160 AGGATTCCATTCCTACAAACCA 57.054 40.909 5.29 0.00 44.50 3.67
6594 9642 9.883293 TCTATGAAATGTAGAGGATAGGAAGAA 57.117 33.333 0.00 0.00 0.00 2.52
6595 9643 9.883293 TTCTATGAAATGTAGAGGATAGGAAGA 57.117 33.333 0.00 0.00 30.45 2.87
6618 9666 9.959721 TGAGTCTAGGCTAATGTTTATTTTTCT 57.040 29.630 0.00 0.00 0.00 2.52
6622 9670 9.686683 ACATTGAGTCTAGGCTAATGTTTATTT 57.313 29.630 18.49 4.21 38.42 1.40
6623 9671 9.686683 AACATTGAGTCTAGGCTAATGTTTATT 57.313 29.630 24.12 12.81 44.80 1.40
6626 9674 9.515226 TTTAACATTGAGTCTAGGCTAATGTTT 57.485 29.630 29.13 20.51 44.80 2.83
6628 9676 9.515226 TTTTTAACATTGAGTCTAGGCTAATGT 57.485 29.630 18.49 18.49 42.03 2.71
6631 9679 9.174166 GGATTTTTAACATTGAGTCTAGGCTAA 57.826 33.333 0.00 0.00 0.00 3.09
6632 9680 8.548877 AGGATTTTTAACATTGAGTCTAGGCTA 58.451 33.333 0.00 0.00 0.00 3.93
6633 9681 7.406104 AGGATTTTTAACATTGAGTCTAGGCT 58.594 34.615 0.00 0.00 0.00 4.58
6634 9682 7.631717 AGGATTTTTAACATTGAGTCTAGGC 57.368 36.000 0.00 0.00 0.00 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.