Multiple sequence alignment - TraesCS3B01G050200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G050200 chr3B 100.000 3897 0 0 1 3897 25182748 25178852 0.000000e+00 7197.0
1 TraesCS3B01G050200 chr3B 87.444 1115 114 11 1983 3091 16130032 16131126 0.000000e+00 1260.0
2 TraesCS3B01G050200 chr3B 85.507 345 25 12 978 1320 16129137 16129458 1.730000e-88 337.0
3 TraesCS3B01G050200 chr3B 91.457 199 15 2 1488 1685 16129508 16129705 4.960000e-69 272.0
4 TraesCS3B01G050200 chr3A 88.408 2243 163 39 896 3091 25881346 25879154 0.000000e+00 2612.0
5 TraesCS3B01G050200 chr3D 92.556 1330 86 8 1768 3091 11440964 11442286 0.000000e+00 1895.0
6 TraesCS3B01G050200 chr3D 92.308 195 14 1 1528 1721 11440462 11440656 3.840000e-70 276.0
7 TraesCS3B01G050200 chr4B 95.109 777 35 3 3123 3897 592678914 592679689 0.000000e+00 1221.0
8 TraesCS3B01G050200 chr4B 83.778 450 62 9 72 519 429349435 429349875 2.170000e-112 416.0
9 TraesCS3B01G050200 chr1B 93.497 815 46 3 3090 3897 262721175 262720361 0.000000e+00 1205.0
10 TraesCS3B01G050200 chr1B 93.497 815 46 3 3090 3897 262763311 262762497 0.000000e+00 1205.0
11 TraesCS3B01G050200 chr5D 91.758 825 57 8 3079 3897 496559470 496558651 0.000000e+00 1136.0
12 TraesCS3B01G050200 chr7B 92.940 779 47 8 3123 3897 678747645 678746871 0.000000e+00 1127.0
13 TraesCS3B01G050200 chr7B 83.871 62 6 4 791 850 632263763 632263704 5.440000e-04 56.5
14 TraesCS3B01G050200 chr7A 92.453 795 50 8 3107 3897 91499824 91500612 0.000000e+00 1127.0
15 TraesCS3B01G050200 chr2A 92.611 785 50 7 3117 3897 724975116 724974336 0.000000e+00 1122.0
16 TraesCS3B01G050200 chr2A 86.770 514 47 8 25 519 156673035 156673546 1.580000e-153 553.0
17 TraesCS3B01G050200 chr2A 85.393 356 32 9 368 705 156673569 156673922 6.200000e-93 351.0
18 TraesCS3B01G050200 chr2A 96.875 64 2 0 787 850 156674074 156674137 1.480000e-19 108.0
19 TraesCS3B01G050200 chr1A 92.201 795 52 8 3107 3897 38361404 38362192 0.000000e+00 1116.0
20 TraesCS3B01G050200 chr1A 92.357 785 52 7 3117 3897 516556613 516555833 0.000000e+00 1110.0
21 TraesCS3B01G050200 chr1A 92.857 56 4 0 795 850 465303114 465303169 8.970000e-12 82.4
22 TraesCS3B01G050200 chr1D 86.267 517 59 11 1 514 165472229 165471722 5.690000e-153 551.0
23 TraesCS3B01G050200 chr1D 96.774 62 2 0 789 850 165471163 165471102 1.920000e-18 104.0
24 TraesCS3B01G050200 chr2B 97.059 34 0 1 818 851 107524977 107525009 5.440000e-04 56.5
25 TraesCS3B01G050200 chr2B 83.871 62 6 4 791 850 243705797 243705738 5.440000e-04 56.5
26 TraesCS3B01G050200 chr2B 83.607 61 6 4 791 849 740778984 740778926 2.000000e-03 54.7
27 TraesCS3B01G050200 chr2B 96.970 33 0 1 818 850 776352734 776352703 2.000000e-03 54.7
28 TraesCS3B01G050200 chr5A 96.970 33 0 1 818 850 387345120 387345151 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G050200 chr3B 25178852 25182748 3896 True 7197.000000 7197 100.000000 1 3897 1 chr3B.!!$R1 3896
1 TraesCS3B01G050200 chr3B 16129137 16131126 1989 False 623.000000 1260 88.136000 978 3091 3 chr3B.!!$F1 2113
2 TraesCS3B01G050200 chr3A 25879154 25881346 2192 True 2612.000000 2612 88.408000 896 3091 1 chr3A.!!$R1 2195
3 TraesCS3B01G050200 chr3D 11440462 11442286 1824 False 1085.500000 1895 92.432000 1528 3091 2 chr3D.!!$F1 1563
4 TraesCS3B01G050200 chr4B 592678914 592679689 775 False 1221.000000 1221 95.109000 3123 3897 1 chr4B.!!$F2 774
5 TraesCS3B01G050200 chr1B 262720361 262721175 814 True 1205.000000 1205 93.497000 3090 3897 1 chr1B.!!$R1 807
6 TraesCS3B01G050200 chr1B 262762497 262763311 814 True 1205.000000 1205 93.497000 3090 3897 1 chr1B.!!$R2 807
7 TraesCS3B01G050200 chr5D 496558651 496559470 819 True 1136.000000 1136 91.758000 3079 3897 1 chr5D.!!$R1 818
8 TraesCS3B01G050200 chr7B 678746871 678747645 774 True 1127.000000 1127 92.940000 3123 3897 1 chr7B.!!$R2 774
9 TraesCS3B01G050200 chr7A 91499824 91500612 788 False 1127.000000 1127 92.453000 3107 3897 1 chr7A.!!$F1 790
10 TraesCS3B01G050200 chr2A 724974336 724975116 780 True 1122.000000 1122 92.611000 3117 3897 1 chr2A.!!$R1 780
11 TraesCS3B01G050200 chr2A 156673035 156674137 1102 False 337.333333 553 89.679333 25 850 3 chr2A.!!$F1 825
12 TraesCS3B01G050200 chr1A 38361404 38362192 788 False 1116.000000 1116 92.201000 3107 3897 1 chr1A.!!$F1 790
13 TraesCS3B01G050200 chr1A 516555833 516556613 780 True 1110.000000 1110 92.357000 3117 3897 1 chr1A.!!$R1 780
14 TraesCS3B01G050200 chr1D 165471102 165472229 1127 True 327.500000 551 91.520500 1 850 2 chr1D.!!$R1 849

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
859 917 0.036306 AGGAAATTCCGTGGTTCGCT 59.964 50.0 6.35 0.0 42.75 4.93 F
860 918 0.168128 GGAAATTCCGTGGTTCGCTG 59.832 55.0 0.00 0.0 38.35 5.18 F
1469 1575 0.175989 GGGGATCGGTCAGTGTCTTC 59.824 60.0 0.00 0.0 0.00 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2451 2835 1.039785 CGGTGAGATGAGCCAGGAGA 61.040 60.000 0.00 0.00 0.0 3.71 R
2565 3149 1.224592 CACAAGGAATAGGGGCGCT 59.775 57.895 7.64 9.68 0.0 5.92 R
3019 3606 0.609131 CAAGTACCCCCAGCCTGTTG 60.609 60.000 0.00 0.00 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 0.247736 CCGCAAGAAGTCCTGCTACT 59.752 55.000 0.74 0.00 43.02 2.57
96 97 0.957362 TCATCATGCACCGCAAAACA 59.043 45.000 0.00 0.00 43.62 2.83
124 125 0.962356 CCAAACCAAGCGCTGATCCT 60.962 55.000 12.58 0.00 0.00 3.24
287 289 7.652105 GGAAACAGGAACATTTTTCTAAACTCC 59.348 37.037 0.00 0.00 0.00 3.85
311 313 7.680442 CCCCCAAAAATTGAAAATACGAATT 57.320 32.000 0.00 0.00 0.00 2.17
313 315 8.020244 CCCCCAAAAATTGAAAATACGAATTTG 58.980 33.333 0.00 0.00 35.46 2.32
331 333 7.011016 ACGAATTTGTTTCCAAAAATGAGAACC 59.989 33.333 0.00 0.00 43.43 3.62
336 338 7.841915 TGTTTCCAAAAATGAGAACCTTTTC 57.158 32.000 0.00 0.00 0.00 2.29
345 347 6.745794 AATGAGAACCTTTTCCAAATTCCA 57.254 33.333 0.00 0.00 31.28 3.53
444 464 3.242608 ACGAACATTGTTTGAACTCACGG 60.243 43.478 21.08 0.00 0.00 4.94
476 496 6.473397 TTGAAATTTGCGAACAGTTTTTGT 57.527 29.167 0.00 0.00 43.45 2.83
488 508 3.310501 ACAGTTTTTGTAACTCCGGAACG 59.689 43.478 5.23 0.00 46.37 3.95
566 624 2.981859 TTTTTAGGCCCGCAAACAAA 57.018 40.000 0.00 0.00 0.00 2.83
567 625 2.981859 TTTTAGGCCCGCAAACAAAA 57.018 40.000 0.00 0.00 0.00 2.44
568 626 3.477210 TTTTAGGCCCGCAAACAAAAT 57.523 38.095 0.00 0.00 0.00 1.82
569 627 3.477210 TTTAGGCCCGCAAACAAAATT 57.523 38.095 0.00 0.00 0.00 1.82
570 628 3.477210 TTAGGCCCGCAAACAAAATTT 57.523 38.095 0.00 0.00 0.00 1.82
571 629 1.592064 AGGCCCGCAAACAAAATTTG 58.408 45.000 0.00 3.89 0.00 2.32
572 630 1.139853 AGGCCCGCAAACAAAATTTGA 59.860 42.857 13.19 0.00 0.00 2.69
573 631 1.943340 GGCCCGCAAACAAAATTTGAA 59.057 42.857 13.19 0.00 0.00 2.69
574 632 2.356069 GGCCCGCAAACAAAATTTGAAA 59.644 40.909 13.19 0.00 0.00 2.69
575 633 3.181496 GGCCCGCAAACAAAATTTGAAAA 60.181 39.130 13.19 0.00 0.00 2.29
576 634 3.788694 GCCCGCAAACAAAATTTGAAAAC 59.211 39.130 13.19 0.00 0.00 2.43
577 635 4.025094 CCCGCAAACAAAATTTGAAAACG 58.975 39.130 13.19 10.13 0.00 3.60
578 636 4.201724 CCCGCAAACAAAATTTGAAAACGA 60.202 37.500 13.19 0.00 0.00 3.85
579 637 5.497273 CCGCAAACAAAATTTGAAAACGAT 58.503 33.333 13.19 0.00 0.00 3.73
580 638 6.292381 CCCGCAAACAAAATTTGAAAACGATA 60.292 34.615 13.19 0.00 0.00 2.92
581 639 7.287229 CCGCAAACAAAATTTGAAAACGATAT 58.713 30.769 13.19 0.00 0.00 1.63
582 640 7.796197 CCGCAAACAAAATTTGAAAACGATATT 59.204 29.630 13.19 0.00 0.00 1.28
583 641 9.152851 CGCAAACAAAATTTGAAAACGATATTT 57.847 25.926 13.19 0.00 0.00 1.40
592 650 9.793252 AATTTGAAAACGATATTTGAGATCCTG 57.207 29.630 0.00 0.00 0.00 3.86
593 651 8.560355 TTTGAAAACGATATTTGAGATCCTGA 57.440 30.769 0.00 0.00 0.00 3.86
594 652 8.560355 TTGAAAACGATATTTGAGATCCTGAA 57.440 30.769 0.00 0.00 0.00 3.02
595 653 7.974675 TGAAAACGATATTTGAGATCCTGAAC 58.025 34.615 0.00 0.00 0.00 3.18
596 654 7.606073 TGAAAACGATATTTGAGATCCTGAACA 59.394 33.333 0.00 0.00 0.00 3.18
597 655 7.921786 AAACGATATTTGAGATCCTGAACAA 57.078 32.000 0.00 0.00 0.00 2.83
598 656 7.921786 AACGATATTTGAGATCCTGAACAAA 57.078 32.000 0.00 0.00 36.82 2.83
599 657 7.921786 ACGATATTTGAGATCCTGAACAAAA 57.078 32.000 0.00 0.00 36.19 2.44
600 658 8.511604 ACGATATTTGAGATCCTGAACAAAAT 57.488 30.769 0.00 0.00 36.19 1.82
601 659 8.960591 ACGATATTTGAGATCCTGAACAAAATT 58.039 29.630 0.00 0.00 36.19 1.82
602 660 9.793252 CGATATTTGAGATCCTGAACAAAATTT 57.207 29.630 0.00 0.00 36.19 1.82
606 664 9.835389 ATTTGAGATCCTGAACAAAATTTGAAA 57.165 25.926 13.19 0.00 36.19 2.69
607 665 9.835389 TTTGAGATCCTGAACAAAATTTGAAAT 57.165 25.926 13.19 0.00 30.94 2.17
608 666 8.821147 TGAGATCCTGAACAAAATTTGAAATG 57.179 30.769 13.19 0.44 0.00 2.32
609 667 8.423349 TGAGATCCTGAACAAAATTTGAAATGT 58.577 29.630 13.19 0.00 0.00 2.71
610 668 9.264719 GAGATCCTGAACAAAATTTGAAATGTT 57.735 29.630 13.19 5.82 38.62 2.71
611 669 9.048446 AGATCCTGAACAAAATTTGAAATGTTG 57.952 29.630 17.03 17.03 36.22 3.33
612 670 8.735692 ATCCTGAACAAAATTTGAAATGTTGT 57.264 26.923 18.23 18.23 36.22 3.32
613 671 7.972527 TCCTGAACAAAATTTGAAATGTTGTG 58.027 30.769 23.02 12.91 36.22 3.33
614 672 7.821359 TCCTGAACAAAATTTGAAATGTTGTGA 59.179 29.630 23.02 14.64 36.22 3.58
615 673 8.449397 CCTGAACAAAATTTGAAATGTTGTGAA 58.551 29.630 23.02 14.78 36.22 3.18
616 674 9.823098 CTGAACAAAATTTGAAATGTTGTGAAA 57.177 25.926 23.02 12.81 36.22 2.69
624 682 9.786105 AATTTGAAATGTTGTGAAAATTTGGAC 57.214 25.926 0.00 0.00 0.00 4.02
625 683 7.912056 TTGAAATGTTGTGAAAATTTGGACA 57.088 28.000 0.00 0.00 0.00 4.02
626 684 7.912056 TGAAATGTTGTGAAAATTTGGACAA 57.088 28.000 9.97 9.97 0.00 3.18
627 685 8.327941 TGAAATGTTGTGAAAATTTGGACAAA 57.672 26.923 13.94 0.00 30.43 2.83
628 686 8.954350 TGAAATGTTGTGAAAATTTGGACAAAT 58.046 25.926 13.94 4.52 42.35 2.32
631 689 8.954950 ATGTTGTGAAAATTTGGACAAATACA 57.045 26.923 13.94 9.43 39.88 2.29
632 690 8.954950 TGTTGTGAAAATTTGGACAAATACAT 57.045 26.923 13.94 1.16 39.88 2.29
748 806 8.226819 AGAAAACAAAAAGAAACCAAAAACCA 57.773 26.923 0.00 0.00 0.00 3.67
749 807 8.349245 AGAAAACAAAAAGAAACCAAAAACCAG 58.651 29.630 0.00 0.00 0.00 4.00
750 808 5.621197 ACAAAAAGAAACCAAAAACCAGC 57.379 34.783 0.00 0.00 0.00 4.85
751 809 4.457603 ACAAAAAGAAACCAAAAACCAGCC 59.542 37.500 0.00 0.00 0.00 4.85
752 810 3.990959 AAAGAAACCAAAAACCAGCCA 57.009 38.095 0.00 0.00 0.00 4.75
753 811 3.990959 AAGAAACCAAAAACCAGCCAA 57.009 38.095 0.00 0.00 0.00 4.52
754 812 3.990959 AGAAACCAAAAACCAGCCAAA 57.009 38.095 0.00 0.00 0.00 3.28
755 813 4.293662 AGAAACCAAAAACCAGCCAAAA 57.706 36.364 0.00 0.00 0.00 2.44
756 814 4.006989 AGAAACCAAAAACCAGCCAAAAC 58.993 39.130 0.00 0.00 0.00 2.43
757 815 2.017138 ACCAAAAACCAGCCAAAACG 57.983 45.000 0.00 0.00 0.00 3.60
758 816 1.294857 CCAAAAACCAGCCAAAACGG 58.705 50.000 0.00 0.00 38.11 4.44
759 817 1.406205 CCAAAAACCAGCCAAAACGGT 60.406 47.619 0.00 0.00 36.97 4.83
760 818 2.351455 CAAAAACCAGCCAAAACGGTT 58.649 42.857 0.00 0.00 44.90 4.44
761 819 2.303163 AAAACCAGCCAAAACGGTTC 57.697 45.000 0.00 0.00 42.18 3.62
762 820 0.462375 AAACCAGCCAAAACGGTTCC 59.538 50.000 0.00 0.00 42.18 3.62
763 821 0.684805 AACCAGCCAAAACGGTTCCA 60.685 50.000 0.00 0.00 38.69 3.53
764 822 0.684805 ACCAGCCAAAACGGTTCCAA 60.685 50.000 0.00 0.00 36.97 3.53
765 823 0.461961 CCAGCCAAAACGGTTCCAAA 59.538 50.000 0.00 0.00 36.97 3.28
766 824 1.134670 CCAGCCAAAACGGTTCCAAAA 60.135 47.619 0.00 0.00 36.97 2.44
767 825 2.484594 CCAGCCAAAACGGTTCCAAAAT 60.485 45.455 0.00 0.00 36.97 1.82
768 826 3.243907 CCAGCCAAAACGGTTCCAAAATA 60.244 43.478 0.00 0.00 36.97 1.40
769 827 3.987220 CAGCCAAAACGGTTCCAAAATAG 59.013 43.478 0.00 0.00 36.97 1.73
770 828 2.734606 GCCAAAACGGTTCCAAAATAGC 59.265 45.455 0.00 0.00 36.97 2.97
771 829 2.983803 CCAAAACGGTTCCAAAATAGCG 59.016 45.455 0.00 0.00 40.74 4.26
773 831 3.547649 AAACGGTTCCAAAATAGCGTC 57.452 42.857 0.00 0.00 46.34 5.19
774 832 2.172851 ACGGTTCCAAAATAGCGTCA 57.827 45.000 0.00 0.00 44.10 4.35
775 833 2.496111 ACGGTTCCAAAATAGCGTCAA 58.504 42.857 0.00 0.00 44.10 3.18
776 834 2.879646 ACGGTTCCAAAATAGCGTCAAA 59.120 40.909 0.00 0.00 44.10 2.69
777 835 3.504520 ACGGTTCCAAAATAGCGTCAAAT 59.495 39.130 0.00 0.00 44.10 2.32
778 836 4.696402 ACGGTTCCAAAATAGCGTCAAATA 59.304 37.500 0.00 0.00 44.10 1.40
779 837 5.355910 ACGGTTCCAAAATAGCGTCAAATAT 59.644 36.000 0.00 0.00 44.10 1.28
780 838 5.681105 CGGTTCCAAAATAGCGTCAAATATG 59.319 40.000 0.00 0.00 0.00 1.78
781 839 6.457663 CGGTTCCAAAATAGCGTCAAATATGA 60.458 38.462 0.00 0.00 0.00 2.15
782 840 7.254852 GGTTCCAAAATAGCGTCAAATATGAA 58.745 34.615 0.00 0.00 37.30 2.57
783 841 7.757624 GGTTCCAAAATAGCGTCAAATATGAAA 59.242 33.333 0.00 0.00 37.30 2.69
784 842 9.134734 GTTCCAAAATAGCGTCAAATATGAAAA 57.865 29.630 0.00 0.00 37.30 2.29
785 843 9.698309 TTCCAAAATAGCGTCAAATATGAAAAA 57.302 25.926 0.00 0.00 37.30 1.94
786 844 9.868277 TCCAAAATAGCGTCAAATATGAAAAAT 57.132 25.926 0.00 0.00 37.30 1.82
790 848 9.520204 AAATAGCGTCAAATATGAAAAATCCTG 57.480 29.630 0.00 0.00 37.30 3.86
791 849 6.515272 AGCGTCAAATATGAAAAATCCTGT 57.485 33.333 0.00 0.00 37.30 4.00
792 850 6.555315 AGCGTCAAATATGAAAAATCCTGTC 58.445 36.000 0.00 0.00 37.30 3.51
793 851 5.743872 GCGTCAAATATGAAAAATCCTGTCC 59.256 40.000 0.00 0.00 37.30 4.02
794 852 6.404734 GCGTCAAATATGAAAAATCCTGTCCT 60.405 38.462 0.00 0.00 37.30 3.85
795 853 7.189512 CGTCAAATATGAAAAATCCTGTCCTC 58.810 38.462 0.00 0.00 37.30 3.71
796 854 7.189512 GTCAAATATGAAAAATCCTGTCCTCG 58.810 38.462 0.00 0.00 37.30 4.63
797 855 5.757850 AATATGAAAAATCCTGTCCTCGC 57.242 39.130 0.00 0.00 0.00 5.03
798 856 2.859165 TGAAAAATCCTGTCCTCGCT 57.141 45.000 0.00 0.00 0.00 4.93
799 857 2.699954 TGAAAAATCCTGTCCTCGCTC 58.300 47.619 0.00 0.00 0.00 5.03
800 858 2.303022 TGAAAAATCCTGTCCTCGCTCT 59.697 45.455 0.00 0.00 0.00 4.09
801 859 3.513912 TGAAAAATCCTGTCCTCGCTCTA 59.486 43.478 0.00 0.00 0.00 2.43
802 860 4.162320 TGAAAAATCCTGTCCTCGCTCTAT 59.838 41.667 0.00 0.00 0.00 1.98
803 861 3.742433 AAATCCTGTCCTCGCTCTATG 57.258 47.619 0.00 0.00 0.00 2.23
804 862 0.965439 ATCCTGTCCTCGCTCTATGC 59.035 55.000 0.00 0.00 38.57 3.14
823 881 2.965387 CGTTACCGCGACATTTAGAC 57.035 50.000 8.23 0.00 0.00 2.59
824 882 1.251002 CGTTACCGCGACATTTAGACG 59.749 52.381 8.23 2.49 38.42 4.18
832 890 1.849219 CGACATTTAGACGCAGAGAGC 59.151 52.381 0.00 0.00 40.87 4.09
843 901 2.586258 GCAGAGAGCGTCAAATAGGA 57.414 50.000 0.00 0.00 0.00 2.94
844 902 2.893637 GCAGAGAGCGTCAAATAGGAA 58.106 47.619 0.00 0.00 0.00 3.36
845 903 3.262420 GCAGAGAGCGTCAAATAGGAAA 58.738 45.455 0.00 0.00 0.00 3.13
846 904 3.873952 GCAGAGAGCGTCAAATAGGAAAT 59.126 43.478 0.00 0.00 0.00 2.17
847 905 4.333926 GCAGAGAGCGTCAAATAGGAAATT 59.666 41.667 0.00 0.00 0.00 1.82
848 906 5.503194 GCAGAGAGCGTCAAATAGGAAATTC 60.503 44.000 0.00 0.00 0.00 2.17
849 907 5.007136 CAGAGAGCGTCAAATAGGAAATTCC 59.993 44.000 3.29 3.29 36.58 3.01
850 908 3.871594 AGAGCGTCAAATAGGAAATTCCG 59.128 43.478 6.35 0.00 42.75 4.30
851 909 3.606687 AGCGTCAAATAGGAAATTCCGT 58.393 40.909 6.35 0.00 42.75 4.69
852 910 3.374058 AGCGTCAAATAGGAAATTCCGTG 59.626 43.478 6.35 4.31 42.75 4.94
853 911 3.486875 GCGTCAAATAGGAAATTCCGTGG 60.487 47.826 6.35 0.00 42.75 4.94
854 912 3.687698 CGTCAAATAGGAAATTCCGTGGT 59.312 43.478 6.35 0.00 42.75 4.16
855 913 4.155280 CGTCAAATAGGAAATTCCGTGGTT 59.845 41.667 6.35 0.00 42.75 3.67
856 914 5.637809 GTCAAATAGGAAATTCCGTGGTTC 58.362 41.667 6.35 0.00 42.75 3.62
857 915 4.393680 TCAAATAGGAAATTCCGTGGTTCG 59.606 41.667 6.35 0.00 42.75 3.95
858 916 1.729284 TAGGAAATTCCGTGGTTCGC 58.271 50.000 6.35 0.00 42.75 4.70
859 917 0.036306 AGGAAATTCCGTGGTTCGCT 59.964 50.000 6.35 0.00 42.75 4.93
860 918 0.168128 GGAAATTCCGTGGTTCGCTG 59.832 55.000 0.00 0.00 38.35 5.18
861 919 0.454452 GAAATTCCGTGGTTCGCTGC 60.454 55.000 0.00 0.00 38.35 5.25
862 920 0.889186 AAATTCCGTGGTTCGCTGCT 60.889 50.000 0.00 0.00 38.35 4.24
863 921 1.298859 AATTCCGTGGTTCGCTGCTC 61.299 55.000 0.00 0.00 38.35 4.26
864 922 2.449031 ATTCCGTGGTTCGCTGCTCA 62.449 55.000 0.00 0.00 38.35 4.26
865 923 2.652382 TTCCGTGGTTCGCTGCTCAA 62.652 55.000 0.00 0.00 38.35 3.02
866 924 2.551270 CGTGGTTCGCTGCTCAAC 59.449 61.111 0.00 0.32 0.00 3.18
867 925 2.946762 GTGGTTCGCTGCTCAACC 59.053 61.111 18.55 18.55 42.28 3.77
868 926 2.281484 TGGTTCGCTGCTCAACCC 60.281 61.111 21.09 9.14 41.38 4.11
869 927 2.032681 GGTTCGCTGCTCAACCCT 59.967 61.111 15.84 0.00 36.76 4.34
870 928 1.600916 GGTTCGCTGCTCAACCCTT 60.601 57.895 15.84 0.00 36.76 3.95
871 929 1.172812 GGTTCGCTGCTCAACCCTTT 61.173 55.000 15.84 0.00 36.76 3.11
872 930 0.668535 GTTCGCTGCTCAACCCTTTT 59.331 50.000 0.00 0.00 0.00 2.27
873 931 1.067060 GTTCGCTGCTCAACCCTTTTT 59.933 47.619 0.00 0.00 0.00 1.94
902 960 4.911522 ACTCTATCTACTAGCCTCCTCTGT 59.088 45.833 0.00 0.00 0.00 3.41
918 976 0.881796 CTGTAGCACTGTCCGTCTCA 59.118 55.000 0.00 0.00 0.00 3.27
930 988 3.195396 TGTCCGTCTCATCACATCAATCA 59.805 43.478 0.00 0.00 0.00 2.57
959 1017 1.153549 CCAGACCAGAACGGCTAGC 60.154 63.158 6.04 6.04 39.03 3.42
975 1033 1.674764 TAGCAGGCAGAGCAGAGAGC 61.675 60.000 0.00 0.00 46.19 4.09
1076 1162 2.062519 GAGGCTTGAGAAGACGAACAC 58.937 52.381 0.00 0.00 43.06 3.32
1104 1190 1.659622 CCAGCAATGGCAGCATCGAA 61.660 55.000 0.00 0.00 44.61 3.71
1171 1257 2.056815 GTCCGGTCCTCCAGGTACC 61.057 68.421 2.73 2.73 36.34 3.34
1174 1260 2.682494 GGTCCTCCAGGTACCGCA 60.682 66.667 6.18 0.00 36.34 5.69
1175 1261 2.064581 GGTCCTCCAGGTACCGCAT 61.065 63.158 6.18 0.00 36.34 4.73
1176 1262 1.442148 GTCCTCCAGGTACCGCATC 59.558 63.158 6.18 0.00 36.34 3.91
1177 1263 1.760875 TCCTCCAGGTACCGCATCC 60.761 63.158 6.18 0.00 36.34 3.51
1178 1264 2.063979 CCTCCAGGTACCGCATCCA 61.064 63.158 6.18 0.00 0.00 3.41
1179 1265 1.144057 CTCCAGGTACCGCATCCAC 59.856 63.158 6.18 0.00 0.00 4.02
1180 1266 2.202878 CCAGGTACCGCATCCACG 60.203 66.667 6.18 0.00 0.00 4.94
1181 1267 2.577059 CAGGTACCGCATCCACGT 59.423 61.111 6.18 0.00 0.00 4.49
1182 1268 1.518572 CAGGTACCGCATCCACGTC 60.519 63.158 6.18 0.00 0.00 4.34
1183 1269 1.681327 AGGTACCGCATCCACGTCT 60.681 57.895 6.18 0.00 0.00 4.18
1184 1270 1.226888 GGTACCGCATCCACGTCTC 60.227 63.158 0.00 0.00 0.00 3.36
1189 1276 2.456119 CGCATCCACGTCTCCTTGC 61.456 63.158 0.00 0.00 0.00 4.01
1192 1279 1.363744 CATCCACGTCTCCTTGCTTC 58.636 55.000 0.00 0.00 0.00 3.86
1205 1292 1.543358 CTTGCTTCTCCCCTCTTTTGC 59.457 52.381 0.00 0.00 0.00 3.68
1215 1302 1.001293 CCCTCTTTTGCTTTCCCTTGC 59.999 52.381 0.00 0.00 0.00 4.01
1231 1318 1.391485 CTTGCTCGAACGAGATTGGTG 59.609 52.381 25.00 6.95 44.53 4.17
1241 1328 4.771114 ACGAGATTGGTGGATTGGATTA 57.229 40.909 0.00 0.00 0.00 1.75
1253 1340 6.006449 GTGGATTGGATTATTGGATAGCACT 58.994 40.000 0.00 0.00 0.00 4.40
1268 1355 0.380378 GCACTGTTTGCCTCGTTTGA 59.620 50.000 0.00 0.00 46.63 2.69
1276 1363 3.410631 TTGCCTCGTTTGATCTACCAA 57.589 42.857 0.00 0.00 0.00 3.67
1279 1366 2.032178 GCCTCGTTTGATCTACCAATGC 59.968 50.000 0.00 0.00 0.00 3.56
1280 1367 2.614057 CCTCGTTTGATCTACCAATGCC 59.386 50.000 0.00 0.00 0.00 4.40
1281 1368 3.535561 CTCGTTTGATCTACCAATGCCT 58.464 45.455 0.00 0.00 0.00 4.75
1282 1369 3.270027 TCGTTTGATCTACCAATGCCTG 58.730 45.455 0.00 0.00 0.00 4.85
1283 1370 3.055458 TCGTTTGATCTACCAATGCCTGA 60.055 43.478 0.00 0.00 0.00 3.86
1284 1371 3.689161 CGTTTGATCTACCAATGCCTGAA 59.311 43.478 0.00 0.00 0.00 3.02
1285 1372 4.336433 CGTTTGATCTACCAATGCCTGAAT 59.664 41.667 0.00 0.00 0.00 2.57
1286 1373 5.585390 GTTTGATCTACCAATGCCTGAATG 58.415 41.667 0.00 0.00 0.00 2.67
1290 1377 6.840527 TGATCTACCAATGCCTGAATGATTA 58.159 36.000 0.00 0.00 0.00 1.75
1301 1388 3.496692 CCTGAATGATTAGGCGATTGGGA 60.497 47.826 0.00 0.00 0.00 4.37
1324 1430 1.679680 CCAATGCCTGAATGCCTGTAG 59.320 52.381 0.00 0.00 0.00 2.74
1342 1448 8.318412 TGCCTGTAGAATAAATCTGTAAGTTCA 58.682 33.333 0.00 0.00 39.30 3.18
1372 1478 8.216423 AGAAATCATACAGTAGATGGCAAAGAT 58.784 33.333 0.00 0.00 0.00 2.40
1380 1486 5.236047 CAGTAGATGGCAAAGATAGTTCAGC 59.764 44.000 0.00 0.00 0.00 4.26
1394 1500 8.261492 AGATAGTTCAGCTAAAATCAACAGTG 57.739 34.615 0.00 0.00 32.72 3.66
1398 1504 5.673337 TCAGCTAAAATCAACAGTGTCAC 57.327 39.130 0.00 0.00 0.00 3.67
1399 1505 5.122519 TCAGCTAAAATCAACAGTGTCACA 58.877 37.500 5.62 0.00 0.00 3.58
1401 1507 6.073058 TCAGCTAAAATCAACAGTGTCACATC 60.073 38.462 5.62 0.00 0.00 3.06
1406 1512 5.536554 AATCAACAGTGTCACATCGATTC 57.463 39.130 5.62 0.00 0.00 2.52
1407 1513 3.988819 TCAACAGTGTCACATCGATTCA 58.011 40.909 5.62 0.00 0.00 2.57
1408 1514 3.740832 TCAACAGTGTCACATCGATTCAC 59.259 43.478 5.62 3.57 0.00 3.18
1418 1524 3.628942 CACATCGATTCACCACCATTCAT 59.371 43.478 0.00 0.00 0.00 2.57
1439 1545 1.793258 CATATCTTGCTGCGGGAGAG 58.207 55.000 0.00 0.00 0.00 3.20
1452 1558 1.209747 CGGGAGAGGTAAAGGAAAGGG 59.790 57.143 0.00 0.00 0.00 3.95
1457 1563 2.772515 AGAGGTAAAGGAAAGGGGATCG 59.227 50.000 0.00 0.00 0.00 3.69
1468 1574 0.252284 AGGGGATCGGTCAGTGTCTT 60.252 55.000 0.00 0.00 0.00 3.01
1469 1575 0.175989 GGGGATCGGTCAGTGTCTTC 59.824 60.000 0.00 0.00 0.00 2.87
1470 1576 0.895530 GGGATCGGTCAGTGTCTTCA 59.104 55.000 0.00 0.00 0.00 3.02
1471 1577 1.482593 GGGATCGGTCAGTGTCTTCAT 59.517 52.381 0.00 0.00 0.00 2.57
1472 1578 2.482142 GGGATCGGTCAGTGTCTTCATC 60.482 54.545 0.00 0.00 0.00 2.92
1473 1579 2.482142 GGATCGGTCAGTGTCTTCATCC 60.482 54.545 0.00 0.00 0.00 3.51
1474 1580 1.627864 TCGGTCAGTGTCTTCATCCA 58.372 50.000 0.00 0.00 0.00 3.41
1475 1581 1.967779 TCGGTCAGTGTCTTCATCCAA 59.032 47.619 0.00 0.00 0.00 3.53
1476 1582 2.029020 TCGGTCAGTGTCTTCATCCAAG 60.029 50.000 0.00 0.00 0.00 3.61
1477 1583 2.079925 GGTCAGTGTCTTCATCCAAGC 58.920 52.381 0.00 0.00 31.26 4.01
1478 1584 2.550855 GGTCAGTGTCTTCATCCAAGCA 60.551 50.000 0.00 0.00 31.26 3.91
1479 1585 3.141398 GTCAGTGTCTTCATCCAAGCAA 58.859 45.455 0.00 0.00 31.26 3.91
1480 1586 3.058639 GTCAGTGTCTTCATCCAAGCAAC 60.059 47.826 0.00 0.00 31.26 4.17
1481 1587 2.880268 CAGTGTCTTCATCCAAGCAACA 59.120 45.455 0.00 0.00 31.26 3.33
1482 1588 3.058432 CAGTGTCTTCATCCAAGCAACAG 60.058 47.826 0.00 0.00 31.26 3.16
1483 1589 3.141398 GTGTCTTCATCCAAGCAACAGA 58.859 45.455 0.00 0.00 31.26 3.41
1484 1590 3.565482 GTGTCTTCATCCAAGCAACAGAA 59.435 43.478 0.00 0.00 31.26 3.02
1506 1612 9.224267 CAGAATATACCAAATAATCTCACCCTG 57.776 37.037 0.00 0.00 0.00 4.45
1533 1640 3.084786 CCCCTTGAGGTCTGATTTTGTC 58.915 50.000 0.00 0.00 0.00 3.18
1539 1646 4.389374 TGAGGTCTGATTTTGTCTTGTCC 58.611 43.478 0.00 0.00 0.00 4.02
1589 1697 5.182760 ACTGAAAGCTGAATCCTTGATTGAC 59.817 40.000 0.00 0.00 37.60 3.18
1615 1723 6.820656 ACATTAACTAGCTGAATCCTCAACTG 59.179 38.462 0.00 0.00 30.57 3.16
1616 1724 6.605471 TTAACTAGCTGAATCCTCAACTGA 57.395 37.500 0.00 0.00 30.57 3.41
1645 1753 5.181811 TGACAACCTCATTACATTGCAAGAG 59.818 40.000 4.94 4.71 0.00 2.85
1646 1754 4.460382 ACAACCTCATTACATTGCAAGAGG 59.540 41.667 22.17 22.17 46.18 3.69
1647 1755 4.574674 ACCTCATTACATTGCAAGAGGA 57.425 40.909 27.72 9.44 44.12 3.71
1648 1756 5.121380 ACCTCATTACATTGCAAGAGGAT 57.879 39.130 27.72 14.50 44.12 3.24
1728 1840 2.837291 GCAAACACCACAGGGCCA 60.837 61.111 6.18 0.00 37.90 5.36
1832 2205 0.763652 CTGCAGCCCAGTCATCCTAT 59.236 55.000 0.00 0.00 36.79 2.57
1842 2215 5.799213 CCCAGTCATCCTATTCCAAGTATC 58.201 45.833 0.00 0.00 0.00 2.24
1843 2216 5.307976 CCCAGTCATCCTATTCCAAGTATCA 59.692 44.000 0.00 0.00 0.00 2.15
1935 2312 7.730332 AGTCTCTTTTATTTTGGGGAATCTGTT 59.270 33.333 0.00 0.00 0.00 3.16
1976 2356 6.608808 ACTTCTTGCTAAGGGATTATGCAATT 59.391 34.615 0.00 0.00 41.76 2.32
2033 2416 6.869913 CACACCATCATTACTTTTCAGCAATT 59.130 34.615 0.00 0.00 0.00 2.32
2104 2487 6.516718 TCTAACCTTCTGAACTGAAACTGAG 58.483 40.000 0.00 0.00 0.00 3.35
2126 2509 7.609960 TGAGGATTTATGTTTGCAGCATAAAA 58.390 30.769 27.09 16.10 45.77 1.52
2178 2561 4.462483 TGGTGCATTTTCCTTCTTGATACC 59.538 41.667 0.00 0.00 0.00 2.73
2229 2612 3.665675 CTGCCACGACAGCCTACCC 62.666 68.421 0.00 0.00 0.00 3.69
2253 2636 1.601759 GGACAGCTGCCACATGTGT 60.602 57.895 23.79 3.74 0.00 3.72
2310 2693 4.651778 TCGACAAAATCCTGGAGTCATTT 58.348 39.130 12.56 1.72 0.00 2.32
2337 2720 0.464373 CCTGCTCCAATGCCGTGTAT 60.464 55.000 0.00 0.00 0.00 2.29
2397 2781 1.135603 CATCACAATTCGTGCCCACAG 60.136 52.381 0.00 0.00 45.92 3.66
2399 2783 1.150536 ACAATTCGTGCCCACAGGT 59.849 52.632 0.00 0.00 34.57 4.00
2475 2859 2.583593 GCTCATCTCACCGGCGAC 60.584 66.667 9.30 0.00 0.00 5.19
2565 3149 3.691342 CTCCACGCCCGAGACCAA 61.691 66.667 0.00 0.00 0.00 3.67
2574 3158 3.458163 CGAGACCAAGCGCCCCTA 61.458 66.667 2.29 0.00 0.00 3.53
2580 3164 1.227383 CCAAGCGCCCCTATTCCTT 59.773 57.895 2.29 0.00 0.00 3.36
2918 3505 3.254060 TCAGTGTTTCTGCGAAGATAGC 58.746 45.455 0.00 0.00 43.32 2.97
2924 3511 0.802222 TCTGCGAAGATAGCGTGTGC 60.802 55.000 0.00 0.00 43.24 4.57
2962 3549 1.144913 TGGGAAGGAGGTGGAACAAAG 59.855 52.381 0.00 0.00 44.16 2.77
2970 3557 4.657039 AGGAGGTGGAACAAAGTACACTTA 59.343 41.667 0.00 0.00 44.16 2.24
3017 3604 0.606130 TGGCTGTGTGCATCAATCGT 60.606 50.000 0.00 0.00 45.15 3.73
3019 3606 1.466360 GGCTGTGTGCATCAATCGTTC 60.466 52.381 0.00 0.00 45.15 3.95
3020 3607 1.197492 GCTGTGTGCATCAATCGTTCA 59.803 47.619 0.00 0.00 42.31 3.18
3057 3646 9.162764 GGTACTTGAAGTGATGTACATGTTTAT 57.837 33.333 14.43 0.00 37.56 1.40
3062 3651 8.648557 TGAAGTGATGTACATGTTTATAGAGC 57.351 34.615 14.43 0.00 0.00 4.09
3106 3695 5.816258 TGTGCATTTTGTCAAACATGATGTT 59.184 32.000 4.72 4.72 43.41 2.71
3114 3703 3.911964 GTCAAACATGATGTTACGTTGGC 59.088 43.478 11.70 3.93 40.14 4.52
3116 3705 3.552604 AACATGATGTTACGTTGGCAC 57.447 42.857 9.41 0.00 39.09 5.01
3136 3733 1.194547 CGTGATATTGGCGCATACACC 59.805 52.381 10.83 0.00 0.00 4.16
3786 4387 2.143008 TCAACAACATACGCACGTCT 57.857 45.000 0.00 0.00 0.00 4.18
3807 4408 1.741401 CATCAACGCGCAGAAGGGA 60.741 57.895 5.73 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.482142 CGGAGCACCTGGTCTTAGATTC 60.482 54.545 0.00 0.00 41.88 2.52
17 18 2.579878 CGGAGCACCTGGTCTTAGA 58.420 57.895 0.00 0.00 41.88 2.10
52 53 2.092538 AGGTAGGTCGCTAGCTCAACTA 60.093 50.000 13.93 8.61 32.89 2.24
67 68 3.144506 GGTGCATGATGAATCAGGTAGG 58.855 50.000 0.00 0.00 40.44 3.18
96 97 3.320826 AGCGCTTGGTTTGGTTCTTAATT 59.679 39.130 2.64 0.00 0.00 1.40
176 178 7.360101 CGAAAACTGTTCGGAGTTTCATAGAAT 60.360 37.037 8.09 0.00 43.83 2.40
179 181 5.404366 TCGAAAACTGTTCGGAGTTTCATAG 59.596 40.000 8.46 0.00 43.83 2.23
188 190 3.003897 CCCAATTTCGAAAACTGTTCGGA 59.996 43.478 15.66 0.00 41.78 4.55
287 289 7.680442 AATTCGTATTTTCAATTTTTGGGGG 57.320 32.000 0.00 0.00 0.00 5.40
311 313 7.335673 GGAAAAGGTTCTCATTTTTGGAAACAA 59.664 33.333 0.00 0.00 40.26 2.83
313 315 6.821160 TGGAAAAGGTTCTCATTTTTGGAAAC 59.179 34.615 0.00 0.00 37.61 2.78
318 320 8.344831 GGAATTTGGAAAAGGTTCTCATTTTTG 58.655 33.333 0.00 0.00 37.61 2.44
319 321 8.052141 TGGAATTTGGAAAAGGTTCTCATTTTT 58.948 29.630 0.00 0.00 37.61 1.94
476 496 7.643371 GTGTTTTAAAATTTCGTTCCGGAGTTA 59.357 33.333 3.34 0.00 0.00 2.24
519 539 7.121759 TGTTCCCATTTCAAAATTTCTTTGCAA 59.878 29.630 0.00 0.00 0.00 4.08
520 540 6.600822 TGTTCCCATTTCAAAATTTCTTTGCA 59.399 30.769 0.00 0.00 0.00 4.08
549 607 3.477210 AATTTTGTTTGCGGGCCTAAA 57.523 38.095 0.84 0.00 0.00 1.85
550 608 3.134458 CAAATTTTGTTTGCGGGCCTAA 58.866 40.909 0.84 0.00 0.00 2.69
551 609 2.365617 TCAAATTTTGTTTGCGGGCCTA 59.634 40.909 0.84 0.00 0.00 3.93
552 610 1.139853 TCAAATTTTGTTTGCGGGCCT 59.860 42.857 0.84 0.00 0.00 5.19
553 611 1.587547 TCAAATTTTGTTTGCGGGCC 58.412 45.000 8.89 0.00 0.00 5.80
554 612 3.682372 TTTCAAATTTTGTTTGCGGGC 57.318 38.095 8.89 0.00 0.00 6.13
555 613 4.025094 CGTTTTCAAATTTTGTTTGCGGG 58.975 39.130 8.89 0.00 0.00 6.13
556 614 4.886971 TCGTTTTCAAATTTTGTTTGCGG 58.113 34.783 8.89 0.00 0.00 5.69
557 615 8.692543 AATATCGTTTTCAAATTTTGTTTGCG 57.307 26.923 8.89 9.72 0.00 4.85
566 624 9.793252 CAGGATCTCAAATATCGTTTTCAAATT 57.207 29.630 0.00 0.00 0.00 1.82
567 625 9.177608 TCAGGATCTCAAATATCGTTTTCAAAT 57.822 29.630 0.00 0.00 0.00 2.32
568 626 8.560355 TCAGGATCTCAAATATCGTTTTCAAA 57.440 30.769 0.00 0.00 0.00 2.69
569 627 8.450964 GTTCAGGATCTCAAATATCGTTTTCAA 58.549 33.333 0.00 0.00 0.00 2.69
570 628 7.606073 TGTTCAGGATCTCAAATATCGTTTTCA 59.394 33.333 0.00 0.00 0.00 2.69
571 629 7.974675 TGTTCAGGATCTCAAATATCGTTTTC 58.025 34.615 0.00 0.00 0.00 2.29
572 630 7.921786 TGTTCAGGATCTCAAATATCGTTTT 57.078 32.000 0.00 0.00 0.00 2.43
573 631 7.921786 TTGTTCAGGATCTCAAATATCGTTT 57.078 32.000 0.00 0.00 0.00 3.60
574 632 7.921786 TTTGTTCAGGATCTCAAATATCGTT 57.078 32.000 0.00 0.00 0.00 3.85
575 633 7.921786 TTTTGTTCAGGATCTCAAATATCGT 57.078 32.000 0.00 0.00 31.45 3.73
576 634 9.793252 AAATTTTGTTCAGGATCTCAAATATCG 57.207 29.630 0.00 0.00 31.45 2.92
580 638 9.835389 TTTCAAATTTTGTTCAGGATCTCAAAT 57.165 25.926 8.89 0.00 31.45 2.32
581 639 9.835389 ATTTCAAATTTTGTTCAGGATCTCAAA 57.165 25.926 8.89 0.00 0.00 2.69
582 640 9.263538 CATTTCAAATTTTGTTCAGGATCTCAA 57.736 29.630 8.89 0.00 0.00 3.02
583 641 8.423349 ACATTTCAAATTTTGTTCAGGATCTCA 58.577 29.630 8.89 0.00 0.00 3.27
584 642 8.822652 ACATTTCAAATTTTGTTCAGGATCTC 57.177 30.769 8.89 0.00 0.00 2.75
585 643 9.048446 CAACATTTCAAATTTTGTTCAGGATCT 57.952 29.630 8.89 0.00 30.23 2.75
586 644 8.829612 ACAACATTTCAAATTTTGTTCAGGATC 58.170 29.630 8.56 0.00 30.23 3.36
587 645 8.614346 CACAACATTTCAAATTTTGTTCAGGAT 58.386 29.630 11.24 0.00 30.23 3.24
588 646 7.821359 TCACAACATTTCAAATTTTGTTCAGGA 59.179 29.630 11.24 4.41 30.23 3.86
589 647 7.972527 TCACAACATTTCAAATTTTGTTCAGG 58.027 30.769 11.24 2.37 30.23 3.86
590 648 9.823098 TTTCACAACATTTCAAATTTTGTTCAG 57.177 25.926 11.24 2.67 30.23 3.02
598 656 9.786105 GTCCAAATTTTCACAACATTTCAAATT 57.214 25.926 0.00 0.00 0.00 1.82
599 657 8.954350 TGTCCAAATTTTCACAACATTTCAAAT 58.046 25.926 0.00 0.00 0.00 2.32
600 658 8.327941 TGTCCAAATTTTCACAACATTTCAAA 57.672 26.923 0.00 0.00 0.00 2.69
601 659 7.912056 TGTCCAAATTTTCACAACATTTCAA 57.088 28.000 0.00 0.00 0.00 2.69
602 660 7.912056 TTGTCCAAATTTTCACAACATTTCA 57.088 28.000 7.37 0.00 0.00 2.69
605 663 9.388506 TGTATTTGTCCAAATTTTCACAACATT 57.611 25.926 10.27 3.76 40.99 2.71
606 664 8.954950 TGTATTTGTCCAAATTTTCACAACAT 57.045 26.923 10.27 9.62 40.99 2.71
607 665 8.954950 ATGTATTTGTCCAAATTTTCACAACA 57.045 26.923 10.27 7.43 40.99 3.33
722 780 9.338622 TGGTTTTTGGTTTCTTTTTGTTTTCTA 57.661 25.926 0.00 0.00 0.00 2.10
723 781 8.226819 TGGTTTTTGGTTTCTTTTTGTTTTCT 57.773 26.923 0.00 0.00 0.00 2.52
724 782 7.114247 GCTGGTTTTTGGTTTCTTTTTGTTTTC 59.886 33.333 0.00 0.00 0.00 2.29
725 783 6.920758 GCTGGTTTTTGGTTTCTTTTTGTTTT 59.079 30.769 0.00 0.00 0.00 2.43
726 784 6.442952 GCTGGTTTTTGGTTTCTTTTTGTTT 58.557 32.000 0.00 0.00 0.00 2.83
727 785 5.048364 GGCTGGTTTTTGGTTTCTTTTTGTT 60.048 36.000 0.00 0.00 0.00 2.83
728 786 4.457603 GGCTGGTTTTTGGTTTCTTTTTGT 59.542 37.500 0.00 0.00 0.00 2.83
729 787 4.457257 TGGCTGGTTTTTGGTTTCTTTTTG 59.543 37.500 0.00 0.00 0.00 2.44
730 788 4.657013 TGGCTGGTTTTTGGTTTCTTTTT 58.343 34.783 0.00 0.00 0.00 1.94
731 789 4.293662 TGGCTGGTTTTTGGTTTCTTTT 57.706 36.364 0.00 0.00 0.00 2.27
732 790 3.990959 TGGCTGGTTTTTGGTTTCTTT 57.009 38.095 0.00 0.00 0.00 2.52
733 791 3.990959 TTGGCTGGTTTTTGGTTTCTT 57.009 38.095 0.00 0.00 0.00 2.52
734 792 3.990959 TTTGGCTGGTTTTTGGTTTCT 57.009 38.095 0.00 0.00 0.00 2.52
735 793 3.181515 CGTTTTGGCTGGTTTTTGGTTTC 60.182 43.478 0.00 0.00 0.00 2.78
736 794 2.744741 CGTTTTGGCTGGTTTTTGGTTT 59.255 40.909 0.00 0.00 0.00 3.27
737 795 2.351455 CGTTTTGGCTGGTTTTTGGTT 58.649 42.857 0.00 0.00 0.00 3.67
738 796 1.406205 CCGTTTTGGCTGGTTTTTGGT 60.406 47.619 0.00 0.00 0.00 3.67
739 797 1.294857 CCGTTTTGGCTGGTTTTTGG 58.705 50.000 0.00 0.00 0.00 3.28
740 798 2.017138 ACCGTTTTGGCTGGTTTTTG 57.983 45.000 0.00 0.00 43.94 2.44
741 799 2.623535 GAACCGTTTTGGCTGGTTTTT 58.376 42.857 0.00 0.00 45.63 1.94
742 800 1.134640 GGAACCGTTTTGGCTGGTTTT 60.135 47.619 0.00 0.00 45.63 2.43
743 801 0.462375 GGAACCGTTTTGGCTGGTTT 59.538 50.000 0.00 0.00 45.63 3.27
745 803 0.684805 TTGGAACCGTTTTGGCTGGT 60.685 50.000 0.00 0.00 43.94 4.00
746 804 0.461961 TTTGGAACCGTTTTGGCTGG 59.538 50.000 0.00 0.00 43.94 4.85
747 805 2.301577 TTTTGGAACCGTTTTGGCTG 57.698 45.000 0.00 0.00 43.94 4.85
748 806 3.554129 GCTATTTTGGAACCGTTTTGGCT 60.554 43.478 0.00 0.00 43.94 4.75
749 807 2.734606 GCTATTTTGGAACCGTTTTGGC 59.265 45.455 0.00 0.00 43.94 4.52
750 808 2.983803 CGCTATTTTGGAACCGTTTTGG 59.016 45.455 0.00 0.00 46.41 3.28
751 809 3.634283 ACGCTATTTTGGAACCGTTTTG 58.366 40.909 0.00 0.00 0.00 2.44
752 810 3.315749 TGACGCTATTTTGGAACCGTTTT 59.684 39.130 0.00 0.00 0.00 2.43
753 811 2.879646 TGACGCTATTTTGGAACCGTTT 59.120 40.909 0.00 0.00 0.00 3.60
754 812 2.496111 TGACGCTATTTTGGAACCGTT 58.504 42.857 0.00 0.00 0.00 4.44
755 813 2.172851 TGACGCTATTTTGGAACCGT 57.827 45.000 0.00 0.00 0.00 4.83
756 814 3.546002 TTTGACGCTATTTTGGAACCG 57.454 42.857 0.00 0.00 0.00 4.44
757 815 6.791303 TCATATTTGACGCTATTTTGGAACC 58.209 36.000 0.00 0.00 0.00 3.62
758 816 8.682128 TTTCATATTTGACGCTATTTTGGAAC 57.318 30.769 0.00 0.00 0.00 3.62
759 817 9.698309 TTTTTCATATTTGACGCTATTTTGGAA 57.302 25.926 0.00 0.00 0.00 3.53
760 818 9.868277 ATTTTTCATATTTGACGCTATTTTGGA 57.132 25.926 0.00 0.00 0.00 3.53
764 822 9.520204 CAGGATTTTTCATATTTGACGCTATTT 57.480 29.630 0.00 0.00 0.00 1.40
765 823 8.686334 ACAGGATTTTTCATATTTGACGCTATT 58.314 29.630 0.00 0.00 0.00 1.73
766 824 8.225603 ACAGGATTTTTCATATTTGACGCTAT 57.774 30.769 0.00 0.00 0.00 2.97
767 825 7.201696 GGACAGGATTTTTCATATTTGACGCTA 60.202 37.037 0.00 0.00 0.00 4.26
768 826 6.404734 GGACAGGATTTTTCATATTTGACGCT 60.405 38.462 0.00 0.00 0.00 5.07
769 827 5.743872 GGACAGGATTTTTCATATTTGACGC 59.256 40.000 0.00 0.00 0.00 5.19
770 828 7.088589 AGGACAGGATTTTTCATATTTGACG 57.911 36.000 0.00 0.00 0.00 4.35
771 829 7.189512 CGAGGACAGGATTTTTCATATTTGAC 58.810 38.462 0.00 0.00 0.00 3.18
772 830 6.183360 GCGAGGACAGGATTTTTCATATTTGA 60.183 38.462 0.00 0.00 0.00 2.69
773 831 5.973565 GCGAGGACAGGATTTTTCATATTTG 59.026 40.000 0.00 0.00 0.00 2.32
774 832 5.888161 AGCGAGGACAGGATTTTTCATATTT 59.112 36.000 0.00 0.00 0.00 1.40
775 833 5.440610 AGCGAGGACAGGATTTTTCATATT 58.559 37.500 0.00 0.00 0.00 1.28
776 834 5.041191 AGCGAGGACAGGATTTTTCATAT 57.959 39.130 0.00 0.00 0.00 1.78
777 835 4.162320 AGAGCGAGGACAGGATTTTTCATA 59.838 41.667 0.00 0.00 0.00 2.15
778 836 3.054802 AGAGCGAGGACAGGATTTTTCAT 60.055 43.478 0.00 0.00 0.00 2.57
779 837 2.303022 AGAGCGAGGACAGGATTTTTCA 59.697 45.455 0.00 0.00 0.00 2.69
780 838 2.979240 AGAGCGAGGACAGGATTTTTC 58.021 47.619 0.00 0.00 0.00 2.29
781 839 4.446371 CATAGAGCGAGGACAGGATTTTT 58.554 43.478 0.00 0.00 0.00 1.94
782 840 3.742640 GCATAGAGCGAGGACAGGATTTT 60.743 47.826 0.00 0.00 0.00 1.82
783 841 2.224161 GCATAGAGCGAGGACAGGATTT 60.224 50.000 0.00 0.00 0.00 2.17
784 842 1.342819 GCATAGAGCGAGGACAGGATT 59.657 52.381 0.00 0.00 0.00 3.01
785 843 0.965439 GCATAGAGCGAGGACAGGAT 59.035 55.000 0.00 0.00 0.00 3.24
786 844 2.420138 GCATAGAGCGAGGACAGGA 58.580 57.895 0.00 0.00 0.00 3.86
805 863 1.006701 GCGTCTAAATGTCGCGGTAAC 60.007 52.381 6.13 0.00 42.36 2.50
806 864 1.270971 GCGTCTAAATGTCGCGGTAA 58.729 50.000 6.13 0.00 42.36 2.85
807 865 2.948093 GCGTCTAAATGTCGCGGTA 58.052 52.632 6.13 0.00 42.36 4.02
808 866 3.776656 GCGTCTAAATGTCGCGGT 58.223 55.556 6.13 0.00 42.36 5.68
812 870 1.849219 GCTCTCTGCGTCTAAATGTCG 59.151 52.381 0.00 0.00 0.00 4.35
824 882 2.586258 TCCTATTTGACGCTCTCTGC 57.414 50.000 0.00 0.00 38.57 4.26
825 883 5.007136 GGAATTTCCTATTTGACGCTCTCTG 59.993 44.000 8.25 0.00 32.53 3.35
826 884 5.119694 GGAATTTCCTATTTGACGCTCTCT 58.880 41.667 8.25 0.00 32.53 3.10
827 885 4.025647 CGGAATTTCCTATTTGACGCTCTC 60.026 45.833 13.45 0.00 33.30 3.20
828 886 3.871594 CGGAATTTCCTATTTGACGCTCT 59.128 43.478 13.45 0.00 33.30 4.09
829 887 3.621715 ACGGAATTTCCTATTTGACGCTC 59.378 43.478 13.45 0.00 33.30 5.03
830 888 3.374058 CACGGAATTTCCTATTTGACGCT 59.626 43.478 13.45 0.00 33.30 5.07
831 889 3.486875 CCACGGAATTTCCTATTTGACGC 60.487 47.826 13.45 0.00 33.30 5.19
832 890 3.687698 ACCACGGAATTTCCTATTTGACG 59.312 43.478 13.45 0.53 33.30 4.35
833 891 5.637809 GAACCACGGAATTTCCTATTTGAC 58.362 41.667 13.45 0.00 33.30 3.18
834 892 4.393680 CGAACCACGGAATTTCCTATTTGA 59.606 41.667 13.45 0.00 38.46 2.69
835 893 4.658071 CGAACCACGGAATTTCCTATTTG 58.342 43.478 13.45 5.34 38.46 2.32
836 894 3.128068 GCGAACCACGGAATTTCCTATTT 59.872 43.478 13.45 1.72 42.83 1.40
837 895 2.681344 GCGAACCACGGAATTTCCTATT 59.319 45.455 13.45 2.58 42.83 1.73
838 896 2.093128 AGCGAACCACGGAATTTCCTAT 60.093 45.455 13.45 0.00 42.83 2.57
839 897 1.276989 AGCGAACCACGGAATTTCCTA 59.723 47.619 13.45 0.00 42.83 2.94
840 898 0.036306 AGCGAACCACGGAATTTCCT 59.964 50.000 13.45 0.00 42.83 3.36
841 899 0.168128 CAGCGAACCACGGAATTTCC 59.832 55.000 5.28 5.28 42.83 3.13
842 900 0.454452 GCAGCGAACCACGGAATTTC 60.454 55.000 0.00 0.00 42.83 2.17
843 901 0.889186 AGCAGCGAACCACGGAATTT 60.889 50.000 0.00 0.00 42.83 1.82
844 902 1.298859 GAGCAGCGAACCACGGAATT 61.299 55.000 0.00 0.00 42.83 2.17
845 903 1.741770 GAGCAGCGAACCACGGAAT 60.742 57.895 0.00 0.00 42.83 3.01
846 904 2.357034 GAGCAGCGAACCACGGAA 60.357 61.111 0.00 0.00 42.83 4.30
847 905 3.158537 TTGAGCAGCGAACCACGGA 62.159 57.895 0.00 0.00 42.83 4.69
848 906 2.664851 TTGAGCAGCGAACCACGG 60.665 61.111 0.00 0.00 42.83 4.94
849 907 2.551270 GTTGAGCAGCGAACCACG 59.449 61.111 0.00 0.00 45.66 4.94
850 908 2.617274 GGGTTGAGCAGCGAACCAC 61.617 63.158 23.58 13.45 43.07 4.16
851 909 2.281484 GGGTTGAGCAGCGAACCA 60.281 61.111 23.58 4.24 43.07 3.67
852 910 1.172812 AAAGGGTTGAGCAGCGAACC 61.173 55.000 17.23 17.23 40.92 3.62
853 911 0.668535 AAAAGGGTTGAGCAGCGAAC 59.331 50.000 2.48 2.48 0.00 3.95
854 912 1.398692 AAAAAGGGTTGAGCAGCGAA 58.601 45.000 0.00 0.00 0.00 4.70
855 913 3.109847 AAAAAGGGTTGAGCAGCGA 57.890 47.368 0.00 0.00 0.00 4.93
871 929 9.571816 GGAGGCTAGTAGATAGAGTAGTAAAAA 57.428 37.037 0.00 0.00 32.76 1.94
872 930 8.947305 AGGAGGCTAGTAGATAGAGTAGTAAAA 58.053 37.037 0.00 0.00 32.76 1.52
873 931 8.508969 AGGAGGCTAGTAGATAGAGTAGTAAA 57.491 38.462 0.00 0.00 32.76 2.01
874 932 7.957448 AGAGGAGGCTAGTAGATAGAGTAGTAA 59.043 40.741 0.00 0.00 32.76 2.24
875 933 7.398047 CAGAGGAGGCTAGTAGATAGAGTAGTA 59.602 44.444 0.00 0.00 32.76 1.82
876 934 6.212791 CAGAGGAGGCTAGTAGATAGAGTAGT 59.787 46.154 0.00 0.00 32.76 2.73
877 935 6.212791 ACAGAGGAGGCTAGTAGATAGAGTAG 59.787 46.154 0.00 0.00 32.76 2.57
878 936 6.086095 ACAGAGGAGGCTAGTAGATAGAGTA 58.914 44.000 0.00 0.00 32.76 2.59
879 937 4.911522 ACAGAGGAGGCTAGTAGATAGAGT 59.088 45.833 0.00 0.00 32.76 3.24
880 938 5.499004 ACAGAGGAGGCTAGTAGATAGAG 57.501 47.826 0.00 0.00 32.76 2.43
881 939 5.046159 GCTACAGAGGAGGCTAGTAGATAGA 60.046 48.000 0.00 0.00 35.38 1.98
882 940 5.183228 GCTACAGAGGAGGCTAGTAGATAG 58.817 50.000 0.00 2.71 35.38 2.08
883 941 4.597940 TGCTACAGAGGAGGCTAGTAGATA 59.402 45.833 0.00 1.86 35.38 1.98
884 942 3.396276 TGCTACAGAGGAGGCTAGTAGAT 59.604 47.826 0.00 0.00 35.38 1.98
885 943 2.778270 TGCTACAGAGGAGGCTAGTAGA 59.222 50.000 0.00 0.19 35.38 2.59
886 944 2.882137 GTGCTACAGAGGAGGCTAGTAG 59.118 54.545 0.00 0.00 36.22 2.57
887 945 2.510382 AGTGCTACAGAGGAGGCTAGTA 59.490 50.000 0.00 0.00 0.00 1.82
888 946 1.286553 AGTGCTACAGAGGAGGCTAGT 59.713 52.381 0.00 0.00 0.00 2.57
889 947 1.680735 CAGTGCTACAGAGGAGGCTAG 59.319 57.143 0.00 0.00 0.00 3.42
890 948 1.006043 ACAGTGCTACAGAGGAGGCTA 59.994 52.381 0.00 0.00 0.00 3.93
891 949 0.252012 ACAGTGCTACAGAGGAGGCT 60.252 55.000 0.00 0.00 0.00 4.58
892 950 0.174617 GACAGTGCTACAGAGGAGGC 59.825 60.000 0.00 0.00 0.00 4.70
893 951 0.820871 GGACAGTGCTACAGAGGAGG 59.179 60.000 0.00 0.00 0.00 4.30
894 952 0.453793 CGGACAGTGCTACAGAGGAG 59.546 60.000 0.00 0.00 0.00 3.69
902 960 1.472878 GTGATGAGACGGACAGTGCTA 59.527 52.381 0.00 0.00 0.00 3.49
918 976 4.024302 GTGATGCGATGTGATTGATGTGAT 60.024 41.667 0.00 0.00 0.00 3.06
930 988 0.107993 CTGGTCTGGTGATGCGATGT 60.108 55.000 0.00 0.00 0.00 3.06
959 1017 1.973816 ATGGCTCTCTGCTCTGCCTG 61.974 60.000 0.00 0.00 45.11 4.85
975 1033 2.672908 TGCCCTGCAGACTCATGG 59.327 61.111 17.39 7.76 33.32 3.66
1029 1115 3.157949 CCTTCCCTCGCCCTCTCC 61.158 72.222 0.00 0.00 0.00 3.71
1057 1143 1.412710 TGTGTTCGTCTTCTCAAGCCT 59.587 47.619 0.00 0.00 0.00 4.58
1104 1190 2.289945 GGTGCAGTCAAGAAGATCCAGT 60.290 50.000 0.00 0.00 0.00 4.00
1157 1243 2.029307 GATGCGGTACCTGGAGGACC 62.029 65.000 10.90 3.88 38.94 4.46
1158 1244 1.442148 GATGCGGTACCTGGAGGAC 59.558 63.158 10.90 0.00 38.94 3.85
1159 1245 1.760875 GGATGCGGTACCTGGAGGA 60.761 63.158 10.90 0.00 38.94 3.71
1160 1246 2.063979 TGGATGCGGTACCTGGAGG 61.064 63.158 10.90 0.00 42.17 4.30
1161 1247 1.144057 GTGGATGCGGTACCTGGAG 59.856 63.158 10.90 0.00 0.00 3.86
1171 1257 2.456119 GCAAGGAGACGTGGATGCG 61.456 63.158 0.00 0.00 40.45 4.73
1172 1258 0.674895 AAGCAAGGAGACGTGGATGC 60.675 55.000 0.00 0.00 40.45 3.91
1174 1260 1.205893 GAGAAGCAAGGAGACGTGGAT 59.794 52.381 0.00 0.00 40.45 3.41
1175 1261 0.603569 GAGAAGCAAGGAGACGTGGA 59.396 55.000 0.00 0.00 40.45 4.02
1176 1262 0.390472 GGAGAAGCAAGGAGACGTGG 60.390 60.000 0.00 0.00 40.45 4.94
1177 1263 0.390472 GGGAGAAGCAAGGAGACGTG 60.390 60.000 0.00 0.00 43.21 4.49
1178 1264 1.545706 GGGGAGAAGCAAGGAGACGT 61.546 60.000 0.00 0.00 0.00 4.34
1179 1265 1.219393 GGGGAGAAGCAAGGAGACG 59.781 63.158 0.00 0.00 0.00 4.18
1180 1266 0.539518 GAGGGGAGAAGCAAGGAGAC 59.460 60.000 0.00 0.00 0.00 3.36
1181 1267 0.415429 AGAGGGGAGAAGCAAGGAGA 59.585 55.000 0.00 0.00 0.00 3.71
1182 1268 1.284313 AAGAGGGGAGAAGCAAGGAG 58.716 55.000 0.00 0.00 0.00 3.69
1183 1269 1.747444 AAAGAGGGGAGAAGCAAGGA 58.253 50.000 0.00 0.00 0.00 3.36
1184 1270 2.165998 CAAAAGAGGGGAGAAGCAAGG 58.834 52.381 0.00 0.00 0.00 3.61
1189 1276 2.822561 GGAAAGCAAAAGAGGGGAGAAG 59.177 50.000 0.00 0.00 0.00 2.85
1192 1279 1.076187 AGGGAAAGCAAAAGAGGGGAG 59.924 52.381 0.00 0.00 0.00 4.30
1205 1292 1.071605 CTCGTTCGAGCAAGGGAAAG 58.928 55.000 9.23 0.00 0.00 2.62
1215 1302 2.586258 ATCCACCAATCTCGTTCGAG 57.414 50.000 14.93 14.93 0.00 4.04
1231 1318 6.006449 ACAGTGCTATCCAATAATCCAATCC 58.994 40.000 0.00 0.00 0.00 3.01
1253 1340 3.071479 GGTAGATCAAACGAGGCAAACA 58.929 45.455 0.00 0.00 0.00 2.83
1261 1348 3.055458 TCAGGCATTGGTAGATCAAACGA 60.055 43.478 0.00 0.00 0.00 3.85
1262 1349 3.270027 TCAGGCATTGGTAGATCAAACG 58.730 45.455 0.00 0.00 0.00 3.60
1268 1355 6.243900 CCTAATCATTCAGGCATTGGTAGAT 58.756 40.000 0.00 0.00 0.00 1.98
1279 1366 2.816087 CCCAATCGCCTAATCATTCAGG 59.184 50.000 0.00 0.00 34.85 3.86
1280 1367 3.743521 TCCCAATCGCCTAATCATTCAG 58.256 45.455 0.00 0.00 0.00 3.02
1281 1368 3.855255 TCCCAATCGCCTAATCATTCA 57.145 42.857 0.00 0.00 0.00 2.57
1282 1369 3.119708 GCATCCCAATCGCCTAATCATTC 60.120 47.826 0.00 0.00 0.00 2.67
1283 1370 2.821969 GCATCCCAATCGCCTAATCATT 59.178 45.455 0.00 0.00 0.00 2.57
1284 1371 2.440409 GCATCCCAATCGCCTAATCAT 58.560 47.619 0.00 0.00 0.00 2.45
1285 1372 1.545428 GGCATCCCAATCGCCTAATCA 60.545 52.381 0.00 0.00 42.78 2.57
1286 1373 1.168714 GGCATCCCAATCGCCTAATC 58.831 55.000 0.00 0.00 42.78 1.75
1290 1377 2.682846 TTGGCATCCCAATCGCCT 59.317 55.556 0.00 0.00 46.01 5.52
1301 1388 1.827394 GGCATTCAGGCATTGGCAT 59.173 52.632 13.20 0.00 43.71 4.40
1342 1448 6.554982 TGCCATCTACTGTATGATTTCTACCT 59.445 38.462 0.00 0.00 0.00 3.08
1372 1478 6.989759 TGACACTGTTGATTTTAGCTGAACTA 59.010 34.615 0.00 0.00 0.00 2.24
1380 1486 6.466308 TCGATGTGACACTGTTGATTTTAG 57.534 37.500 7.20 0.00 0.00 1.85
1394 1500 2.093306 TGGTGGTGAATCGATGTGAC 57.907 50.000 0.00 0.00 0.00 3.67
1398 1504 3.549423 GCATGAATGGTGGTGAATCGATG 60.549 47.826 0.00 0.00 0.00 3.84
1399 1505 2.620115 GCATGAATGGTGGTGAATCGAT 59.380 45.455 0.00 0.00 0.00 3.59
1401 1507 1.744522 TGCATGAATGGTGGTGAATCG 59.255 47.619 0.00 0.00 0.00 3.34
1406 1512 4.866921 CAAGATATGCATGAATGGTGGTG 58.133 43.478 10.16 0.00 0.00 4.17
1433 1539 1.564818 CCCCTTTCCTTTACCTCTCCC 59.435 57.143 0.00 0.00 0.00 4.30
1435 1541 3.181464 CGATCCCCTTTCCTTTACCTCTC 60.181 52.174 0.00 0.00 0.00 3.20
1439 1545 1.562942 ACCGATCCCCTTTCCTTTACC 59.437 52.381 0.00 0.00 0.00 2.85
1452 1558 2.482142 GGATGAAGACACTGACCGATCC 60.482 54.545 0.00 0.00 0.00 3.36
1457 1563 2.079925 GCTTGGATGAAGACACTGACC 58.920 52.381 0.00 0.00 32.82 4.02
1468 1574 6.000246 TGGTATATTCTGTTGCTTGGATGA 58.000 37.500 0.00 0.00 0.00 2.92
1469 1575 6.698008 TTGGTATATTCTGTTGCTTGGATG 57.302 37.500 0.00 0.00 0.00 3.51
1470 1576 7.902920 ATTTGGTATATTCTGTTGCTTGGAT 57.097 32.000 0.00 0.00 0.00 3.41
1471 1577 8.815565 TTATTTGGTATATTCTGTTGCTTGGA 57.184 30.769 0.00 0.00 0.00 3.53
1472 1578 9.683069 GATTATTTGGTATATTCTGTTGCTTGG 57.317 33.333 0.00 0.00 0.00 3.61
1475 1581 9.851686 TGAGATTATTTGGTATATTCTGTTGCT 57.148 29.630 0.00 0.00 0.00 3.91
1476 1582 9.884465 GTGAGATTATTTGGTATATTCTGTTGC 57.116 33.333 0.00 0.00 0.00 4.17
1478 1584 9.574516 GGGTGAGATTATTTGGTATATTCTGTT 57.425 33.333 0.00 0.00 0.00 3.16
1479 1585 8.949421 AGGGTGAGATTATTTGGTATATTCTGT 58.051 33.333 0.00 0.00 0.00 3.41
1480 1586 9.224267 CAGGGTGAGATTATTTGGTATATTCTG 57.776 37.037 0.00 0.00 0.00 3.02
1481 1587 7.885399 GCAGGGTGAGATTATTTGGTATATTCT 59.115 37.037 0.00 0.00 0.00 2.40
1482 1588 7.148407 CGCAGGGTGAGATTATTTGGTATATTC 60.148 40.741 0.00 0.00 0.00 1.75
1483 1589 6.655003 CGCAGGGTGAGATTATTTGGTATATT 59.345 38.462 0.00 0.00 0.00 1.28
1484 1590 6.173339 CGCAGGGTGAGATTATTTGGTATAT 58.827 40.000 0.00 0.00 0.00 0.86
1524 1630 8.006298 ACAGTAATTTGGACAAGACAAAATCA 57.994 30.769 0.00 0.00 40.74 2.57
1533 1640 5.647658 TGCCTCATACAGTAATTTGGACAAG 59.352 40.000 0.00 0.00 0.00 3.16
1539 1646 4.201950 GCTGGTGCCTCATACAGTAATTTG 60.202 45.833 0.00 0.00 33.62 2.32
1589 1697 6.820656 AGTTGAGGATTCAGCTAGTTAATGTG 59.179 38.462 0.00 0.00 42.27 3.21
1615 1723 4.002906 TGTAATGAGGTTGTCACTGGTC 57.997 45.455 0.00 0.00 38.28 4.02
1616 1724 4.640771 ATGTAATGAGGTTGTCACTGGT 57.359 40.909 0.00 0.00 38.28 4.00
1728 1840 4.054369 TGGGGAATGGTCTGATTTAGGAT 58.946 43.478 0.00 0.00 0.00 3.24
1906 2283 7.950124 AGATTCCCCAAAATAAAAGAGACTCAA 59.050 33.333 5.02 0.00 0.00 3.02
1918 2295 3.784178 TGGCAACAGATTCCCCAAAATA 58.216 40.909 0.00 0.00 46.17 1.40
1995 2378 4.916183 TGATGGTGTGACATGGAAATGTA 58.084 39.130 0.00 0.00 34.45 2.29
2033 2416 7.856894 CGTGCATACATGATTGATCAATTTGTA 59.143 33.333 28.72 28.72 40.69 2.41
2104 2487 8.881743 TGATTTTTATGCTGCAAACATAAATCC 58.118 29.630 24.34 18.60 44.90 3.01
2126 2509 2.901839 AGGCCTGCTTGTGAAAATGATT 59.098 40.909 3.11 0.00 0.00 2.57
2178 2561 1.904865 ATGCCCAACTGTGCACTGG 60.905 57.895 25.15 20.11 40.88 4.00
2202 2585 3.381983 TCGTGGCAGGACGAGCAT 61.382 61.111 5.66 0.00 43.26 3.79
2229 2612 1.102809 TGTGGCAGCTGTCCTTGTTG 61.103 55.000 17.28 0.00 0.00 3.33
2268 2651 1.803922 CGCGATGCACCGACTGTAA 60.804 57.895 3.51 0.00 0.00 2.41
2310 2693 1.619654 CATTGGAGCAGGGAACACAA 58.380 50.000 0.00 0.00 0.00 3.33
2337 2720 1.065491 AGTGTCTTCACAGTGCAACCA 60.065 47.619 0.00 0.00 46.01 3.67
2451 2835 1.039785 CGGTGAGATGAGCCAGGAGA 61.040 60.000 0.00 0.00 0.00 3.71
2475 2859 3.196254 CCTCCTTGGATTTCCATTTGTGG 59.804 47.826 0.00 0.00 46.97 4.17
2565 3149 1.224592 CACAAGGAATAGGGGCGCT 59.775 57.895 7.64 9.68 0.00 5.92
2924 3511 2.019951 ACGCTTACGCTTGACACGG 61.020 57.895 0.00 0.00 45.53 4.94
2970 3557 4.037684 GGATCAACTAGCTACCACATACGT 59.962 45.833 0.00 0.00 0.00 3.57
3017 3604 0.770557 AGTACCCCCAGCCTGTTGAA 60.771 55.000 0.00 0.00 0.00 2.69
3019 3606 0.609131 CAAGTACCCCCAGCCTGTTG 60.609 60.000 0.00 0.00 0.00 3.33
3020 3607 0.770557 TCAAGTACCCCCAGCCTGTT 60.771 55.000 0.00 0.00 0.00 3.16
3057 3646 3.955650 GGTACCTGAACAACAGCTCTA 57.044 47.619 4.06 0.00 44.52 2.43
3114 3703 1.864082 TGTATGCGCCAATATCACGTG 59.136 47.619 9.94 9.94 0.00 4.49
3116 3705 1.194547 GGTGTATGCGCCAATATCACG 59.805 52.381 8.69 0.00 44.43 4.35
3136 3733 4.463879 CCTCCAGGTGCGGCTCAG 62.464 72.222 0.00 0.00 0.00 3.35
3628 4229 1.075601 AAAACCTGCTGATCCTCCCA 58.924 50.000 0.00 0.00 0.00 4.37
3786 4387 0.737367 CCTTCTGCGCGTTGATGAGA 60.737 55.000 8.43 0.00 0.00 3.27
3807 4408 1.186267 AGGAGGCGACGAAGAGGTTT 61.186 55.000 0.00 0.00 0.00 3.27
3815 4416 2.758089 GCGAAGTAGGAGGCGACGA 61.758 63.158 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.