Multiple sequence alignment - TraesCS3B01G049800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G049800 chr3B 100.000 2070 0 0 1 2070 25058038 25055969 0.000000e+00 3823.0
1 TraesCS3B01G049800 chr3B 87.480 1278 95 36 766 2010 25122420 25121175 0.000000e+00 1413.0
2 TraesCS3B01G049800 chr3B 92.075 429 28 2 3 430 25123049 25122626 1.260000e-167 599.0
3 TraesCS3B01G049800 chr3B 100.000 118 0 0 2339 2456 25055700 25055583 4.110000e-53 219.0
4 TraesCS3B01G049800 chr3B 81.503 173 17 6 572 737 25122581 25122417 7.130000e-26 128.0
5 TraesCS3B01G049800 chr3D 88.087 1511 112 35 572 2032 17392625 17391133 0.000000e+00 1731.0
6 TraesCS3B01G049800 chr3D 85.272 1066 98 30 697 1728 17407726 17406686 0.000000e+00 1044.0
7 TraesCS3B01G049800 chr3D 83.933 1139 116 35 649 1744 17592537 17591423 0.000000e+00 1027.0
8 TraesCS3B01G049800 chr3D 83.933 1139 116 35 649 1744 17602820 17603934 0.000000e+00 1027.0
9 TraesCS3B01G049800 chr3D 84.865 925 72 27 577 1461 17434126 17433230 0.000000e+00 870.0
10 TraesCS3B01G049800 chr3D 87.948 307 31 2 1 307 17394021 17393721 8.350000e-95 357.0
11 TraesCS3B01G049800 chr3D 87.948 307 32 1 1 307 17434687 17434386 8.350000e-95 357.0
12 TraesCS3B01G049800 chr3D 84.806 283 13 12 1767 2032 17406605 17406336 8.710000e-65 257.0
13 TraesCS3B01G049800 chr3D 92.553 94 6 1 302 395 17393633 17393541 1.530000e-27 134.0
14 TraesCS3B01G049800 chr3A 85.499 1462 100 47 572 1996 19466633 19468019 0.000000e+00 1423.0
15 TraesCS3B01G049800 chr3A 88.442 969 70 22 814 1760 19329029 19328081 0.000000e+00 1131.0
16 TraesCS3B01G049800 chr3A 82.641 674 68 31 1109 1740 25925588 25926254 3.570000e-153 551.0
17 TraesCS3B01G049800 chr3A 84.791 263 32 4 602 856 25925300 25925562 8.710000e-65 257.0
18 TraesCS3B01G049800 chr3A 85.830 247 28 6 1 246 19449882 19450122 3.130000e-64 255.0
19 TraesCS3B01G049800 chr3A 88.462 156 8 4 1851 1996 19324712 19324557 1.940000e-41 180.0
20 TraesCS3B01G049800 chr3A 93.578 109 6 1 322 430 19466481 19466588 7.030000e-36 161.0
21 TraesCS3B01G049800 chr3A 87.059 85 11 0 429 513 178133152 178133236 2.010000e-16 97.1
22 TraesCS3B01G049800 chrUn 85.284 1162 119 29 572 1712 37339203 37338073 0.000000e+00 1151.0
23 TraesCS3B01G049800 chrUn 85.284 1162 119 29 572 1712 237380335 237379205 0.000000e+00 1151.0
24 TraesCS3B01G049800 chrUn 81.469 1144 128 45 633 1719 291906722 291905606 0.000000e+00 861.0
25 TraesCS3B01G049800 chrUn 86.272 743 56 29 984 1712 263451466 263452176 0.000000e+00 765.0
26 TraesCS3B01G049800 chrUn 81.088 386 29 28 1340 1712 37961970 37961616 4.030000e-68 268.0
27 TraesCS3B01G049800 chrUn 92.222 90 7 0 341 430 38637313 38637224 7.130000e-26 128.0
28 TraesCS3B01G049800 chrUn 89.899 99 10 0 332 430 263449837 263449935 7.130000e-26 128.0
29 TraesCS3B01G049800 chrUn 89.899 99 10 0 332 430 268149079 268149177 7.130000e-26 128.0
30 TraesCS3B01G049800 chrUn 92.222 90 7 0 341 430 434584375 434584286 7.130000e-26 128.0
31 TraesCS3B01G049800 chrUn 92.222 90 7 0 341 430 444058696 444058607 7.130000e-26 128.0
32 TraesCS3B01G049800 chrUn 88.889 99 11 0 332 430 329698710 329698808 3.320000e-24 122.0
33 TraesCS3B01G049800 chr5B 82.973 1110 122 30 667 1733 426652321 426651236 0.000000e+00 941.0
34 TraesCS3B01G049800 chr5D 88.954 679 55 9 1019 1697 361342255 361341597 0.000000e+00 821.0
35 TraesCS3B01G049800 chr5D 82.353 85 15 0 429 513 565199562 565199478 9.420000e-10 75.0
36 TraesCS3B01G049800 chr6D 88.764 89 9 1 429 516 69750906 69750994 9.290000e-20 108.0
37 TraesCS3B01G049800 chr6D 88.764 89 9 1 429 516 69789292 69789380 9.290000e-20 108.0
38 TraesCS3B01G049800 chr6D 87.500 88 11 0 429 516 69825743 69825830 4.320000e-18 102.0
39 TraesCS3B01G049800 chr6D 82.090 67 11 1 15 81 120151001 120151066 3.410000e-04 56.5
40 TraesCS3B01G049800 chr7A 87.778 90 11 0 425 514 94634981 94634892 3.340000e-19 106.0
41 TraesCS3B01G049800 chr7A 82.857 70 10 1 15 84 348572434 348572367 7.330000e-06 62.1
42 TraesCS3B01G049800 chr1A 84.444 90 14 0 425 514 244786399 244786310 3.360000e-14 89.8
43 TraesCS3B01G049800 chr2B 83.908 87 12 2 429 514 794792780 794792695 5.630000e-12 82.4
44 TraesCS3B01G049800 chr2A 86.111 72 8 2 429 499 683567228 683567298 2.620000e-10 76.8
45 TraesCS3B01G049800 chr2A 84.286 70 8 3 13 81 266886198 266886131 5.670000e-07 65.8
46 TraesCS3B01G049800 chr4B 83.051 59 9 1 26 84 325220450 325220393 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G049800 chr3B 25055583 25058038 2455 True 2021.000000 3823 100.000000 1 2456 2 chr3B.!!$R1 2455
1 TraesCS3B01G049800 chr3B 25121175 25123049 1874 True 713.333333 1413 87.019333 3 2010 3 chr3B.!!$R2 2007
2 TraesCS3B01G049800 chr3D 17591423 17592537 1114 True 1027.000000 1027 83.933000 649 1744 1 chr3D.!!$R1 1095
3 TraesCS3B01G049800 chr3D 17602820 17603934 1114 False 1027.000000 1027 83.933000 649 1744 1 chr3D.!!$F1 1095
4 TraesCS3B01G049800 chr3D 17391133 17394021 2888 True 740.666667 1731 89.529333 1 2032 3 chr3D.!!$R2 2031
5 TraesCS3B01G049800 chr3D 17406336 17407726 1390 True 650.500000 1044 85.039000 697 2032 2 chr3D.!!$R3 1335
6 TraesCS3B01G049800 chr3D 17433230 17434687 1457 True 613.500000 870 86.406500 1 1461 2 chr3D.!!$R4 1460
7 TraesCS3B01G049800 chr3A 19466481 19468019 1538 False 792.000000 1423 89.538500 322 1996 2 chr3A.!!$F3 1674
8 TraesCS3B01G049800 chr3A 19324557 19329029 4472 True 655.500000 1131 88.452000 814 1996 2 chr3A.!!$R1 1182
9 TraesCS3B01G049800 chr3A 25925300 25926254 954 False 404.000000 551 83.716000 602 1740 2 chr3A.!!$F4 1138
10 TraesCS3B01G049800 chrUn 37338073 37339203 1130 True 1151.000000 1151 85.284000 572 1712 1 chrUn.!!$R1 1140
11 TraesCS3B01G049800 chrUn 237379205 237380335 1130 True 1151.000000 1151 85.284000 572 1712 1 chrUn.!!$R4 1140
12 TraesCS3B01G049800 chrUn 291905606 291906722 1116 True 861.000000 861 81.469000 633 1719 1 chrUn.!!$R5 1086
13 TraesCS3B01G049800 chrUn 263449837 263452176 2339 False 446.500000 765 88.085500 332 1712 2 chrUn.!!$F3 1380
14 TraesCS3B01G049800 chr5B 426651236 426652321 1085 True 941.000000 941 82.973000 667 1733 1 chr5B.!!$R1 1066
15 TraesCS3B01G049800 chr5D 361341597 361342255 658 True 821.000000 821 88.954000 1019 1697 1 chr5D.!!$R1 678

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
838 3213 0.038251 TCGTCGATTGCAGAGTGCTT 60.038 50.0 0.0 0.0 45.31 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2353 8210 0.105607 ACTAGGGATTCGGGGGAGAC 60.106 60.0 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 161 3.592814 CGACCGCGATGAGGCCTA 61.593 66.667 4.42 0.00 40.82 3.93
160 162 2.027751 GACCGCGATGAGGCCTAC 59.972 66.667 4.42 0.00 0.00 3.18
161 163 2.758327 ACCGCGATGAGGCCTACA 60.758 61.111 4.42 6.26 0.00 2.74
162 164 2.279517 CCGCGATGAGGCCTACAC 60.280 66.667 4.42 0.00 0.00 2.90
176 178 3.306780 GGCCTACACTACACATCAACACT 60.307 47.826 0.00 0.00 0.00 3.55
191 193 7.914871 CACATCAACACTACTTTGATCAAAACA 59.085 33.333 20.82 10.93 40.92 2.83
313 408 5.277683 CCATCGAGGATGACATTTTTAGCTG 60.278 44.000 0.00 0.00 42.09 4.24
316 411 4.259970 CGAGGATGACATTTTTAGCTGTCG 60.260 45.833 0.00 0.00 43.74 4.35
387 482 4.823989 ACCTGGACAAAAGATTTGACTCTG 59.176 41.667 9.62 3.14 0.00 3.35
403 498 6.716934 TGACTCTGTCTTATATCAGGTTCC 57.283 41.667 0.00 0.00 33.15 3.62
426 1348 8.477419 TCCTCAAAAAGTCAAGTAATTGGATT 57.523 30.769 2.65 0.00 0.00 3.01
430 1352 9.959749 TCAAAAAGTCAAGTAATTGGATTGTAC 57.040 29.630 2.65 0.00 0.00 2.90
433 1355 7.923414 AAGTCAAGTAATTGGATTGTACTCC 57.077 36.000 2.65 0.00 35.74 3.85
434 1356 6.415573 AGTCAAGTAATTGGATTGTACTCCC 58.584 40.000 2.65 0.00 34.12 4.30
435 1357 6.215636 AGTCAAGTAATTGGATTGTACTCCCT 59.784 38.462 2.65 0.00 34.12 4.20
436 1358 6.539103 GTCAAGTAATTGGATTGTACTCCCTC 59.461 42.308 2.65 0.00 34.12 4.30
438 1360 6.240549 AGTAATTGGATTGTACTCCCTCTG 57.759 41.667 0.00 0.00 34.12 3.35
440 1362 5.520748 AATTGGATTGTACTCCCTCTGTT 57.479 39.130 0.00 0.00 34.12 3.16
441 1363 4.993705 TTGGATTGTACTCCCTCTGTTT 57.006 40.909 0.00 0.00 34.12 2.83
442 1364 4.553330 TGGATTGTACTCCCTCTGTTTC 57.447 45.455 0.00 0.00 34.12 2.78
443 1365 3.907474 TGGATTGTACTCCCTCTGTTTCA 59.093 43.478 0.00 0.00 34.12 2.69
444 1366 4.536090 TGGATTGTACTCCCTCTGTTTCAT 59.464 41.667 0.00 0.00 34.12 2.57
445 1367 5.724370 TGGATTGTACTCCCTCTGTTTCATA 59.276 40.000 0.00 0.00 34.12 2.15
446 1368 6.214615 TGGATTGTACTCCCTCTGTTTCATAA 59.785 38.462 0.00 0.00 34.12 1.90
447 1369 7.092444 TGGATTGTACTCCCTCTGTTTCATAAT 60.092 37.037 0.00 0.00 34.12 1.28
448 1370 8.429641 GGATTGTACTCCCTCTGTTTCATAATA 58.570 37.037 0.00 0.00 0.00 0.98
508 1430 9.658799 AATGTTCTTATATTATGAGACGGATGG 57.341 33.333 0.00 0.00 0.00 3.51
509 1431 8.417273 TGTTCTTATATTATGAGACGGATGGA 57.583 34.615 0.00 0.00 0.00 3.41
510 1432 8.523658 TGTTCTTATATTATGAGACGGATGGAG 58.476 37.037 0.00 0.00 0.00 3.86
511 1433 8.524487 GTTCTTATATTATGAGACGGATGGAGT 58.476 37.037 0.00 0.00 0.00 3.85
512 1434 9.749340 TTCTTATATTATGAGACGGATGGAGTA 57.251 33.333 0.00 0.00 0.00 2.59
513 1435 9.397280 TCTTATATTATGAGACGGATGGAGTAG 57.603 37.037 0.00 0.00 0.00 2.57
514 1436 9.179909 CTTATATTATGAGACGGATGGAGTAGT 57.820 37.037 0.00 0.00 0.00 2.73
548 1479 1.228894 TCGGTTGGTCTCAGCTCCT 60.229 57.895 0.00 0.00 0.00 3.69
549 1480 1.079543 CGGTTGGTCTCAGCTCCTG 60.080 63.158 0.00 0.00 0.00 3.86
550 1481 1.821061 CGGTTGGTCTCAGCTCCTGT 61.821 60.000 0.00 0.00 32.61 4.00
551 1482 0.321122 GGTTGGTCTCAGCTCCTGTG 60.321 60.000 0.00 0.00 32.61 3.66
552 1483 0.681733 GTTGGTCTCAGCTCCTGTGA 59.318 55.000 0.00 0.00 32.62 3.58
553 1484 0.972134 TTGGTCTCAGCTCCTGTGAG 59.028 55.000 0.00 0.00 42.51 3.51
554 1485 0.178950 TGGTCTCAGCTCCTGTGAGT 60.179 55.000 0.42 0.00 41.92 3.41
555 1486 1.075536 TGGTCTCAGCTCCTGTGAGTA 59.924 52.381 0.42 0.00 41.92 2.59
556 1487 1.748493 GGTCTCAGCTCCTGTGAGTAG 59.252 57.143 0.42 0.00 41.92 2.57
557 1488 2.442413 GTCTCAGCTCCTGTGAGTAGT 58.558 52.381 0.42 0.00 41.92 2.73
558 1489 2.823154 GTCTCAGCTCCTGTGAGTAGTT 59.177 50.000 0.42 0.00 41.92 2.24
559 1490 2.822561 TCTCAGCTCCTGTGAGTAGTTG 59.177 50.000 0.42 0.00 41.92 3.16
560 1491 2.822561 CTCAGCTCCTGTGAGTAGTTGA 59.177 50.000 0.00 0.00 40.95 3.18
561 1492 3.435275 TCAGCTCCTGTGAGTAGTTGAT 58.565 45.455 0.00 0.00 40.95 2.57
562 1493 3.834813 TCAGCTCCTGTGAGTAGTTGATT 59.165 43.478 0.00 0.00 40.95 2.57
563 1494 3.931468 CAGCTCCTGTGAGTAGTTGATTG 59.069 47.826 0.00 0.00 40.95 2.67
564 1495 3.580458 AGCTCCTGTGAGTAGTTGATTGT 59.420 43.478 0.00 0.00 40.95 2.71
565 1496 3.681897 GCTCCTGTGAGTAGTTGATTGTG 59.318 47.826 0.00 0.00 40.95 3.33
566 1497 3.664107 TCCTGTGAGTAGTTGATTGTGC 58.336 45.455 0.00 0.00 0.00 4.57
567 1498 2.413112 CCTGTGAGTAGTTGATTGTGCG 59.587 50.000 0.00 0.00 0.00 5.34
568 1499 3.317150 CTGTGAGTAGTTGATTGTGCGA 58.683 45.455 0.00 0.00 0.00 5.10
569 1500 3.057019 TGTGAGTAGTTGATTGTGCGAC 58.943 45.455 0.00 0.00 0.00 5.19
570 1501 2.412089 GTGAGTAGTTGATTGTGCGACC 59.588 50.000 0.00 0.00 0.00 4.79
636 1572 6.145338 TCTCCATGTCGTATCCTAGAAAAC 57.855 41.667 0.00 0.00 0.00 2.43
647 2943 1.006832 CTAGAAAACGCCCCATCACG 58.993 55.000 0.00 0.00 0.00 4.35
712 3053 2.035783 GGAGAAGGCCCACCAACC 59.964 66.667 0.00 0.00 39.06 3.77
713 3054 2.840753 GGAGAAGGCCCACCAACCA 61.841 63.158 0.00 0.00 39.06 3.67
729 3072 4.202367 ACCAACCACAAAGAAGGAGAGTAG 60.202 45.833 0.00 0.00 0.00 2.57
737 3080 7.123547 CCACAAAGAAGGAGAGTAGTCTAGAAT 59.876 40.741 0.00 0.00 30.97 2.40
807 3182 0.998727 GCCAGCTGAAAAGCGAAACG 60.999 55.000 17.39 0.00 40.27 3.60
809 3184 1.529438 CCAGCTGAAAAGCGAAACGTA 59.471 47.619 17.39 0.00 40.27 3.57
811 3186 3.218398 CAGCTGAAAAGCGAAACGTAAG 58.782 45.455 8.42 0.00 41.57 2.34
838 3213 0.038251 TCGTCGATTGCAGAGTGCTT 60.038 50.000 0.00 0.00 45.31 3.91
866 3242 0.528017 TCAAGAGCAGCACCTACGAG 59.472 55.000 0.00 0.00 0.00 4.18
949 3344 3.376218 GCAGACAGCATCCTACCTG 57.624 57.895 0.00 0.00 44.79 4.00
950 3345 0.813210 GCAGACAGCATCCTACCTGC 60.813 60.000 0.00 0.00 44.79 4.85
951 3346 0.529337 CAGACAGCATCCTACCTGCG 60.529 60.000 0.00 0.00 44.38 5.18
952 3347 1.227380 GACAGCATCCTACCTGCGG 60.227 63.158 0.00 0.00 44.38 5.69
953 3348 1.990060 ACAGCATCCTACCTGCGGT 60.990 57.895 5.58 5.58 44.38 5.68
966 3375 1.202533 CCTGCGGTCCGATACAGATTT 60.203 52.381 17.49 0.00 31.67 2.17
968 3377 2.540101 CTGCGGTCCGATACAGATTTTC 59.460 50.000 17.49 0.00 31.67 2.29
994 3407 2.558359 GAGCTACAACCCAAAGCAACAT 59.442 45.455 0.00 0.00 38.75 2.71
1107 3532 1.091771 CGATCTCAGGCGGCAACAAT 61.092 55.000 13.08 0.00 0.00 2.71
1274 3699 2.873649 GCACAAAGGAGAAGGAGGACAG 60.874 54.545 0.00 0.00 0.00 3.51
1473 3936 1.342076 TGAGTATTCGGGTCAGAGCCT 60.342 52.381 16.76 0.54 32.48 4.58
1502 3966 3.418068 GTGTGTGCGAGCTCTGCC 61.418 66.667 21.97 15.54 0.00 4.85
1543 4020 4.274459 AGTTGTGTCTTGTTCTTGCTGATC 59.726 41.667 0.00 0.00 0.00 2.92
1544 4021 2.802247 TGTGTCTTGTTCTTGCTGATCG 59.198 45.455 0.00 0.00 0.00 3.69
1545 4022 3.059884 GTGTCTTGTTCTTGCTGATCGA 58.940 45.455 0.00 0.00 0.00 3.59
1562 4044 1.812922 GAGTGTGGCGAGGCATCTG 60.813 63.158 1.94 0.00 0.00 2.90
1563 4045 2.046892 GTGTGGCGAGGCATCTGT 60.047 61.111 1.94 0.00 0.00 3.41
1564 4046 1.218047 GTGTGGCGAGGCATCTGTA 59.782 57.895 1.94 0.00 0.00 2.74
1565 4047 1.084370 GTGTGGCGAGGCATCTGTAC 61.084 60.000 1.94 0.00 0.00 2.90
1582 4064 6.462073 TCTGTACTTGTATTGCGTTTCTTC 57.538 37.500 0.00 0.00 0.00 2.87
1719 4229 4.551388 ACTTGTTTTTGCTTGTGTTTCGA 58.449 34.783 0.00 0.00 0.00 3.71
1760 4318 1.562672 ATGGCAAGCGGGAACTAGGT 61.563 55.000 0.00 0.00 0.00 3.08
1761 4319 1.449778 GGCAAGCGGGAACTAGGTC 60.450 63.158 0.00 0.00 0.00 3.85
1762 4320 1.810030 GCAAGCGGGAACTAGGTCG 60.810 63.158 0.67 0.00 0.00 4.79
1827 4621 5.410746 TCTGTCTCACATTCAGCTTTCATTC 59.589 40.000 0.00 0.00 0.00 2.67
1889 7728 4.082733 TGTGTGACTTCTATCTCACCTTCG 60.083 45.833 5.74 0.00 40.68 3.79
2052 7909 9.442047 AGACTTTTGAAAATCTACTATCCAGTG 57.558 33.333 0.00 0.00 36.14 3.66
2053 7910 9.436957 GACTTTTGAAAATCTACTATCCAGTGA 57.563 33.333 0.00 0.00 36.14 3.41
2054 7911 9.793259 ACTTTTGAAAATCTACTATCCAGTGAA 57.207 29.630 0.00 0.00 36.14 3.18
2068 7925 9.793259 ACTATCCAGTGAATTTTTCTTAAGACA 57.207 29.630 4.18 0.00 32.25 3.41
2355 8212 2.421739 AGTGTGCACCCACTCGTC 59.578 61.111 15.69 0.00 41.84 4.20
2356 8213 2.134287 AGTGTGCACCCACTCGTCT 61.134 57.895 15.69 0.00 41.84 4.18
2357 8214 1.664965 GTGTGCACCCACTCGTCTC 60.665 63.158 15.69 0.00 42.54 3.36
2358 8215 2.048127 GTGCACCCACTCGTCTCC 60.048 66.667 5.22 0.00 38.93 3.71
2359 8216 3.311110 TGCACCCACTCGTCTCCC 61.311 66.667 0.00 0.00 0.00 4.30
2360 8217 4.083862 GCACCCACTCGTCTCCCC 62.084 72.222 0.00 0.00 0.00 4.81
2361 8218 3.391382 CACCCACTCGTCTCCCCC 61.391 72.222 0.00 0.00 0.00 5.40
2363 8220 4.753662 CCCACTCGTCTCCCCCGA 62.754 72.222 0.00 0.00 0.00 5.14
2364 8221 2.678934 CCACTCGTCTCCCCCGAA 60.679 66.667 0.00 0.00 33.34 4.30
2365 8222 2.058595 CCACTCGTCTCCCCCGAAT 61.059 63.158 0.00 0.00 33.34 3.34
2366 8223 1.437986 CACTCGTCTCCCCCGAATC 59.562 63.158 0.00 0.00 33.34 2.52
2367 8224 1.757340 ACTCGTCTCCCCCGAATCC 60.757 63.158 0.00 0.00 33.34 3.01
2368 8225 2.443390 TCGTCTCCCCCGAATCCC 60.443 66.667 0.00 0.00 0.00 3.85
2369 8226 2.444140 CGTCTCCCCCGAATCCCT 60.444 66.667 0.00 0.00 0.00 4.20
2370 8227 1.152610 CGTCTCCCCCGAATCCCTA 60.153 63.158 0.00 0.00 0.00 3.53
2371 8228 1.179814 CGTCTCCCCCGAATCCCTAG 61.180 65.000 0.00 0.00 0.00 3.02
2372 8229 0.105607 GTCTCCCCCGAATCCCTAGT 60.106 60.000 0.00 0.00 0.00 2.57
2373 8230 0.105658 TCTCCCCCGAATCCCTAGTG 60.106 60.000 0.00 0.00 0.00 2.74
2374 8231 0.398664 CTCCCCCGAATCCCTAGTGT 60.399 60.000 0.00 0.00 0.00 3.55
2375 8232 0.689745 TCCCCCGAATCCCTAGTGTG 60.690 60.000 0.00 0.00 0.00 3.82
2376 8233 1.146263 CCCCGAATCCCTAGTGTGC 59.854 63.158 0.00 0.00 0.00 4.57
2377 8234 1.622607 CCCCGAATCCCTAGTGTGCA 61.623 60.000 0.00 0.00 0.00 4.57
2378 8235 0.462047 CCCGAATCCCTAGTGTGCAC 60.462 60.000 10.75 10.75 0.00 4.57
2379 8236 0.462047 CCGAATCCCTAGTGTGCACC 60.462 60.000 15.69 5.76 0.00 5.01
2380 8237 0.462047 CGAATCCCTAGTGTGCACCC 60.462 60.000 15.69 1.68 0.00 4.61
2381 8238 0.618458 GAATCCCTAGTGTGCACCCA 59.382 55.000 15.69 0.00 0.00 4.51
2382 8239 0.328258 AATCCCTAGTGTGCACCCAC 59.672 55.000 15.69 6.89 42.40 4.61
2383 8240 0.547712 ATCCCTAGTGTGCACCCACT 60.548 55.000 15.69 14.58 46.94 4.00
2384 8241 0.766674 TCCCTAGTGTGCACCCACTT 60.767 55.000 15.69 0.05 42.99 3.16
2385 8242 0.606401 CCCTAGTGTGCACCCACTTG 60.606 60.000 15.69 12.56 42.99 3.16
2386 8243 0.108585 CCTAGTGTGCACCCACTTGT 59.891 55.000 15.69 0.00 42.99 3.16
2387 8244 1.512926 CTAGTGTGCACCCACTTGTC 58.487 55.000 15.69 0.00 42.99 3.18
2388 8245 1.070758 CTAGTGTGCACCCACTTGTCT 59.929 52.381 15.69 2.78 42.99 3.41
2389 8246 0.179045 AGTGTGCACCCACTTGTCTC 60.179 55.000 15.69 0.00 42.99 3.36
2390 8247 1.148273 TGTGCACCCACTTGTCTCC 59.852 57.895 15.69 0.00 42.54 3.71
2391 8248 1.600916 GTGCACCCACTTGTCTCCC 60.601 63.158 5.22 0.00 38.93 4.30
2392 8249 2.034221 GCACCCACTTGTCTCCCC 59.966 66.667 0.00 0.00 0.00 4.81
2393 8250 2.757077 CACCCACTTGTCTCCCCC 59.243 66.667 0.00 0.00 0.00 5.40
2394 8251 2.928396 ACCCACTTGTCTCCCCCG 60.928 66.667 0.00 0.00 0.00 5.73
2395 8252 2.606519 CCCACTTGTCTCCCCCGA 60.607 66.667 0.00 0.00 0.00 5.14
2396 8253 2.663196 CCACTTGTCTCCCCCGAC 59.337 66.667 0.00 0.00 34.52 4.79
2397 8254 2.663196 CACTTGTCTCCCCCGACC 59.337 66.667 0.00 0.00 32.97 4.79
2398 8255 1.913762 CACTTGTCTCCCCCGACCT 60.914 63.158 0.00 0.00 32.97 3.85
2399 8256 1.609794 ACTTGTCTCCCCCGACCTC 60.610 63.158 0.00 0.00 32.97 3.85
2400 8257 1.305381 CTTGTCTCCCCCGACCTCT 60.305 63.158 0.00 0.00 32.97 3.69
2401 8258 0.905337 CTTGTCTCCCCCGACCTCTT 60.905 60.000 0.00 0.00 32.97 2.85
2402 8259 0.473117 TTGTCTCCCCCGACCTCTTT 60.473 55.000 0.00 0.00 32.97 2.52
2403 8260 0.903454 TGTCTCCCCCGACCTCTTTC 60.903 60.000 0.00 0.00 32.97 2.62
2404 8261 1.305887 TCTCCCCCGACCTCTTTCC 60.306 63.158 0.00 0.00 0.00 3.13
2405 8262 2.285144 TCCCCCGACCTCTTTCCC 60.285 66.667 0.00 0.00 0.00 3.97
2406 8263 2.285442 CCCCCGACCTCTTTCCCT 60.285 66.667 0.00 0.00 0.00 4.20
2407 8264 2.368011 CCCCCGACCTCTTTCCCTC 61.368 68.421 0.00 0.00 0.00 4.30
2408 8265 2.722201 CCCCGACCTCTTTCCCTCG 61.722 68.421 0.00 0.00 0.00 4.63
2409 8266 2.184579 CCGACCTCTTTCCCTCGC 59.815 66.667 0.00 0.00 0.00 5.03
2410 8267 2.184579 CGACCTCTTTCCCTCGCC 59.815 66.667 0.00 0.00 0.00 5.54
2411 8268 2.646175 CGACCTCTTTCCCTCGCCA 61.646 63.158 0.00 0.00 0.00 5.69
2412 8269 1.079057 GACCTCTTTCCCTCGCCAC 60.079 63.158 0.00 0.00 0.00 5.01
2413 8270 2.269241 CCTCTTTCCCTCGCCACC 59.731 66.667 0.00 0.00 0.00 4.61
2414 8271 2.125512 CTCTTTCCCTCGCCACCG 60.126 66.667 0.00 0.00 0.00 4.94
2415 8272 2.920912 TCTTTCCCTCGCCACCGT 60.921 61.111 0.00 0.00 35.54 4.83
2416 8273 2.434359 CTTTCCCTCGCCACCGTC 60.434 66.667 0.00 0.00 35.54 4.79
2417 8274 4.367023 TTTCCCTCGCCACCGTCG 62.367 66.667 0.00 0.00 35.54 5.12
2425 8282 4.072088 GCCACCGTCGCGACAAAG 62.072 66.667 35.71 25.67 0.00 2.77
2426 8283 4.072088 CCACCGTCGCGACAAAGC 62.072 66.667 35.71 11.82 0.00 3.51
2427 8284 4.072088 CACCGTCGCGACAAAGCC 62.072 66.667 35.71 11.05 0.00 4.35
2431 8288 3.774702 GTCGCGACAAAGCCCGAC 61.775 66.667 33.09 2.59 42.39 4.79
2434 8291 3.423154 GCGACAAAGCCCGACCAG 61.423 66.667 0.00 0.00 0.00 4.00
2435 8292 3.423154 CGACAAAGCCCGACCAGC 61.423 66.667 0.00 0.00 0.00 4.85
2436 8293 3.423154 GACAAAGCCCGACCAGCG 61.423 66.667 0.00 0.00 40.47 5.18
2437 8294 4.250305 ACAAAGCCCGACCAGCGT 62.250 61.111 0.00 0.00 38.67 5.07
2438 8295 2.978010 CAAAGCCCGACCAGCGTT 60.978 61.111 0.00 0.00 38.67 4.84
2439 8296 2.978010 AAAGCCCGACCAGCGTTG 60.978 61.111 0.00 0.00 38.67 4.10
2448 8305 2.031919 CCAGCGTTGGTGGCAGTA 59.968 61.111 10.61 0.00 44.28 2.74
2449 8306 2.034879 CCAGCGTTGGTGGCAGTAG 61.035 63.158 10.61 0.00 44.28 2.57
2450 8307 2.034879 CAGCGTTGGTGGCAGTAGG 61.035 63.158 0.00 0.00 0.00 3.18
2451 8308 2.746277 GCGTTGGTGGCAGTAGGG 60.746 66.667 0.00 0.00 0.00 3.53
2452 8309 3.065306 CGTTGGTGGCAGTAGGGA 58.935 61.111 0.00 0.00 0.00 4.20
2453 8310 1.602237 CGTTGGTGGCAGTAGGGAT 59.398 57.895 0.00 0.00 0.00 3.85
2454 8311 0.462047 CGTTGGTGGCAGTAGGGATC 60.462 60.000 0.00 0.00 0.00 3.36
2455 8312 0.912486 GTTGGTGGCAGTAGGGATCT 59.088 55.000 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 4.335416 TCTCGCATCTCCATTTTTCCTTT 58.665 39.130 0.00 0.00 0.00 3.11
151 153 2.815158 TGATGTGTAGTGTAGGCCTCA 58.185 47.619 9.68 4.34 0.00 3.86
158 160 7.718525 TCAAAGTAGTGTTGATGTGTAGTGTA 58.281 34.615 0.00 0.00 30.08 2.90
159 161 6.578944 TCAAAGTAGTGTTGATGTGTAGTGT 58.421 36.000 0.00 0.00 30.08 3.55
160 162 7.384932 TGATCAAAGTAGTGTTGATGTGTAGTG 59.615 37.037 4.47 0.00 43.96 2.74
161 163 7.441836 TGATCAAAGTAGTGTTGATGTGTAGT 58.558 34.615 4.47 0.00 43.96 2.73
162 164 7.889589 TGATCAAAGTAGTGTTGATGTGTAG 57.110 36.000 4.47 0.00 43.96 2.74
176 178 8.735315 TGTCTTGAAGTTGTTTTGATCAAAGTA 58.265 29.630 19.64 10.90 0.00 2.24
191 193 3.829601 TGTGGTTTTGGTGTCTTGAAGTT 59.170 39.130 0.00 0.00 0.00 2.66
387 482 8.794335 ACTTTTTGAGGAACCTGATATAAGAC 57.206 34.615 0.00 0.00 0.00 3.01
482 1404 9.658799 CCATCCGTCTCATAATATAAGAACATT 57.341 33.333 0.00 0.00 0.00 2.71
483 1405 9.035890 TCCATCCGTCTCATAATATAAGAACAT 57.964 33.333 0.00 0.00 0.00 2.71
484 1406 8.417273 TCCATCCGTCTCATAATATAAGAACA 57.583 34.615 0.00 0.00 0.00 3.18
485 1407 8.524487 ACTCCATCCGTCTCATAATATAAGAAC 58.476 37.037 0.00 0.00 0.00 3.01
486 1408 8.651589 ACTCCATCCGTCTCATAATATAAGAA 57.348 34.615 0.00 0.00 0.00 2.52
487 1409 9.397280 CTACTCCATCCGTCTCATAATATAAGA 57.603 37.037 0.00 0.00 0.00 2.10
488 1410 9.179909 ACTACTCCATCCGTCTCATAATATAAG 57.820 37.037 0.00 0.00 0.00 1.73
489 1411 9.529823 AACTACTCCATCCGTCTCATAATATAA 57.470 33.333 0.00 0.00 0.00 0.98
490 1412 8.957466 CAACTACTCCATCCGTCTCATAATATA 58.043 37.037 0.00 0.00 0.00 0.86
491 1413 7.670140 TCAACTACTCCATCCGTCTCATAATAT 59.330 37.037 0.00 0.00 0.00 1.28
492 1414 7.002276 TCAACTACTCCATCCGTCTCATAATA 58.998 38.462 0.00 0.00 0.00 0.98
493 1415 5.833667 TCAACTACTCCATCCGTCTCATAAT 59.166 40.000 0.00 0.00 0.00 1.28
494 1416 5.198207 TCAACTACTCCATCCGTCTCATAA 58.802 41.667 0.00 0.00 0.00 1.90
495 1417 4.788679 TCAACTACTCCATCCGTCTCATA 58.211 43.478 0.00 0.00 0.00 2.15
496 1418 3.632333 TCAACTACTCCATCCGTCTCAT 58.368 45.455 0.00 0.00 0.00 2.90
497 1419 3.081710 TCAACTACTCCATCCGTCTCA 57.918 47.619 0.00 0.00 0.00 3.27
498 1420 4.363999 CAATCAACTACTCCATCCGTCTC 58.636 47.826 0.00 0.00 0.00 3.36
499 1421 3.133003 CCAATCAACTACTCCATCCGTCT 59.867 47.826 0.00 0.00 0.00 4.18
500 1422 3.458189 CCAATCAACTACTCCATCCGTC 58.542 50.000 0.00 0.00 0.00 4.79
501 1423 2.420129 GCCAATCAACTACTCCATCCGT 60.420 50.000 0.00 0.00 0.00 4.69
502 1424 2.213499 GCCAATCAACTACTCCATCCG 58.787 52.381 0.00 0.00 0.00 4.18
503 1425 2.213499 CGCCAATCAACTACTCCATCC 58.787 52.381 0.00 0.00 0.00 3.51
504 1426 2.906354 ACGCCAATCAACTACTCCATC 58.094 47.619 0.00 0.00 0.00 3.51
505 1427 3.055094 AGAACGCCAATCAACTACTCCAT 60.055 43.478 0.00 0.00 0.00 3.41
506 1428 2.301870 AGAACGCCAATCAACTACTCCA 59.698 45.455 0.00 0.00 0.00 3.86
507 1429 2.973945 AGAACGCCAATCAACTACTCC 58.026 47.619 0.00 0.00 0.00 3.85
508 1430 4.246458 AGAAGAACGCCAATCAACTACTC 58.754 43.478 0.00 0.00 0.00 2.59
509 1431 4.246458 GAGAAGAACGCCAATCAACTACT 58.754 43.478 0.00 0.00 0.00 2.57
510 1432 3.060895 CGAGAAGAACGCCAATCAACTAC 59.939 47.826 0.00 0.00 0.00 2.73
511 1433 3.250744 CGAGAAGAACGCCAATCAACTA 58.749 45.455 0.00 0.00 0.00 2.24
512 1434 2.069273 CGAGAAGAACGCCAATCAACT 58.931 47.619 0.00 0.00 0.00 3.16
513 1435 1.128692 CCGAGAAGAACGCCAATCAAC 59.871 52.381 0.00 0.00 0.00 3.18
514 1436 1.270625 ACCGAGAAGAACGCCAATCAA 60.271 47.619 0.00 0.00 0.00 2.57
548 1479 3.057019 GTCGCACAATCAACTACTCACA 58.943 45.455 0.00 0.00 0.00 3.58
549 1480 2.412089 GGTCGCACAATCAACTACTCAC 59.588 50.000 0.00 0.00 0.00 3.51
550 1481 2.683968 GGTCGCACAATCAACTACTCA 58.316 47.619 0.00 0.00 0.00 3.41
551 1482 1.654105 CGGTCGCACAATCAACTACTC 59.346 52.381 0.00 0.00 0.00 2.59
552 1483 1.000506 ACGGTCGCACAATCAACTACT 59.999 47.619 0.00 0.00 0.00 2.57
553 1484 1.126113 CACGGTCGCACAATCAACTAC 59.874 52.381 0.00 0.00 0.00 2.73
554 1485 1.424403 CACGGTCGCACAATCAACTA 58.576 50.000 0.00 0.00 0.00 2.24
555 1486 1.841663 GCACGGTCGCACAATCAACT 61.842 55.000 0.00 0.00 0.00 3.16
556 1487 1.440353 GCACGGTCGCACAATCAAC 60.440 57.895 0.00 0.00 0.00 3.18
557 1488 2.942879 GCACGGTCGCACAATCAA 59.057 55.556 0.00 0.00 0.00 2.57
558 1489 3.410516 CGCACGGTCGCACAATCA 61.411 61.111 0.00 0.00 0.00 2.57
559 1490 3.071459 CTCGCACGGTCGCACAATC 62.071 63.158 0.00 0.00 0.00 2.67
560 1491 3.112075 CTCGCACGGTCGCACAAT 61.112 61.111 0.00 0.00 0.00 2.71
561 1492 4.578898 ACTCGCACGGTCGCACAA 62.579 61.111 0.00 0.00 0.00 3.33
562 1493 4.994201 GACTCGCACGGTCGCACA 62.994 66.667 0.00 0.00 0.00 4.57
636 1572 2.819595 CTGGAACGTGATGGGGCG 60.820 66.667 0.00 0.00 0.00 6.13
647 2943 0.099082 CTCGGCGAGTACTCTGGAAC 59.901 60.000 27.92 5.00 0.00 3.62
712 3053 7.455641 TTCTAGACTACTCTCCTTCTTTGTG 57.544 40.000 0.00 0.00 0.00 3.33
713 3054 9.181061 GTATTCTAGACTACTCTCCTTCTTTGT 57.819 37.037 11.88 0.00 0.00 2.83
729 3072 4.337555 TGAAGGTGCTACCGTATTCTAGAC 59.662 45.833 0.00 0.00 44.90 2.59
737 3080 0.828022 CCCATGAAGGTGCTACCGTA 59.172 55.000 0.00 0.00 44.90 4.02
811 3186 4.326058 CAATCGACGAGCGTTTGC 57.674 55.556 3.01 0.00 41.18 3.68
885 3267 2.105806 GATGGAGGGCGATGGGACTC 62.106 65.000 0.00 0.00 0.00 3.36
947 3342 2.225068 AAATCTGTATCGGACCGCAG 57.775 50.000 9.66 11.28 0.00 5.18
948 3343 2.546778 GAAAATCTGTATCGGACCGCA 58.453 47.619 9.66 0.12 0.00 5.69
949 3344 1.865340 GGAAAATCTGTATCGGACCGC 59.135 52.381 9.66 0.00 0.00 5.68
950 3345 2.480845 GGGAAAATCTGTATCGGACCG 58.519 52.381 7.84 7.84 0.00 4.79
951 3346 2.486727 GGGGGAAAATCTGTATCGGACC 60.487 54.545 0.00 0.00 0.00 4.46
952 3347 2.805657 CGGGGGAAAATCTGTATCGGAC 60.806 54.545 0.00 0.00 0.00 4.79
953 3348 1.414919 CGGGGGAAAATCTGTATCGGA 59.585 52.381 0.00 0.00 0.00 4.55
966 3375 2.295602 GGGTTGTAGCTCGGGGGAA 61.296 63.158 0.00 0.00 0.00 3.97
968 3377 2.132089 TTTGGGTTGTAGCTCGGGGG 62.132 60.000 0.00 0.00 0.00 5.40
1107 3532 2.734723 GCGAACGCAGCTGTCTCA 60.735 61.111 16.64 0.00 41.49 3.27
1161 3586 1.300697 GTCGGCCTTGAAGACGTGT 60.301 57.895 0.00 0.00 0.00 4.49
1274 3699 2.604174 CGGTGCCACTTGTCGTTCC 61.604 63.158 0.00 0.00 0.00 3.62
1473 3936 1.308047 GCACACACATGAACCAGACA 58.692 50.000 0.00 0.00 0.00 3.41
1502 3966 8.718102 ACACAACTATAGCATACTTTTAGGTG 57.282 34.615 0.00 0.00 35.64 4.00
1543 4020 2.887568 GATGCCTCGCCACACTCG 60.888 66.667 0.00 0.00 0.00 4.18
1544 4021 1.812922 CAGATGCCTCGCCACACTC 60.813 63.158 0.00 0.00 0.00 3.51
1545 4022 1.257750 TACAGATGCCTCGCCACACT 61.258 55.000 0.00 0.00 0.00 3.55
1562 4044 5.163884 GGGAGAAGAAACGCAATACAAGTAC 60.164 44.000 0.00 0.00 0.00 2.73
1563 4045 4.933400 GGGAGAAGAAACGCAATACAAGTA 59.067 41.667 0.00 0.00 0.00 2.24
1564 4046 3.751698 GGGAGAAGAAACGCAATACAAGT 59.248 43.478 0.00 0.00 0.00 3.16
1565 4047 4.003648 AGGGAGAAGAAACGCAATACAAG 58.996 43.478 0.00 0.00 0.00 3.16
1582 4064 3.181465 ACAAGTACAGACACAACAGGGAG 60.181 47.826 0.00 0.00 0.00 4.30
1663 4160 3.539253 CAAAGTCTGCACTGCACAC 57.461 52.632 0.00 0.00 33.79 3.82
1719 4229 3.588842 TGTTTCTCCTGATCCTGTCCATT 59.411 43.478 0.00 0.00 0.00 3.16
1762 4320 4.512944 TCGATCATTCTTTAAGCAGATGGC 59.487 41.667 0.00 0.00 45.30 4.40
1827 4621 2.427095 TGATCAGTGTAGACCCACGATG 59.573 50.000 0.00 0.00 40.33 3.84
1889 7728 9.809096 ATTTCTCAAGAAAGAAGAAAGAAAACC 57.191 29.630 10.65 0.00 45.87 3.27
2010 7867 9.620660 TTCAAAAGTCTTAAGTTTGAACTTCAC 57.379 29.630 20.27 8.28 45.65 3.18
2042 7899 9.793259 TGTCTTAAGAAAAATTCACTGGATAGT 57.207 29.630 6.78 0.00 37.75 2.12
2339 8196 1.664965 GAGACGAGTGGGTGCACAC 60.665 63.158 20.43 17.25 41.63 3.82
2340 8197 2.734591 GAGACGAGTGGGTGCACA 59.265 61.111 20.43 0.00 0.00 4.57
2341 8198 2.048127 GGAGACGAGTGGGTGCAC 60.048 66.667 8.80 8.80 0.00 4.57
2342 8199 3.311110 GGGAGACGAGTGGGTGCA 61.311 66.667 0.00 0.00 0.00 4.57
2343 8200 4.083862 GGGGAGACGAGTGGGTGC 62.084 72.222 0.00 0.00 0.00 5.01
2344 8201 3.391382 GGGGGAGACGAGTGGGTG 61.391 72.222 0.00 0.00 0.00 4.61
2346 8203 4.753662 TCGGGGGAGACGAGTGGG 62.754 72.222 0.00 0.00 35.12 4.61
2347 8204 2.017559 GATTCGGGGGAGACGAGTGG 62.018 65.000 0.00 0.00 41.81 4.00
2348 8205 1.437986 GATTCGGGGGAGACGAGTG 59.562 63.158 0.00 0.00 41.81 3.51
2349 8206 1.757340 GGATTCGGGGGAGACGAGT 60.757 63.158 0.00 0.00 41.81 4.18
2350 8207 2.499827 GGGATTCGGGGGAGACGAG 61.500 68.421 0.00 0.00 41.81 4.18
2351 8208 1.648302 TAGGGATTCGGGGGAGACGA 61.648 60.000 0.00 0.00 38.78 4.20
2352 8209 1.152610 TAGGGATTCGGGGGAGACG 60.153 63.158 0.00 0.00 0.00 4.18
2353 8210 0.105607 ACTAGGGATTCGGGGGAGAC 60.106 60.000 0.00 0.00 0.00 3.36
2354 8211 0.105658 CACTAGGGATTCGGGGGAGA 60.106 60.000 0.00 0.00 0.00 3.71
2355 8212 0.398664 ACACTAGGGATTCGGGGGAG 60.399 60.000 0.00 0.00 0.00 4.30
2356 8213 0.689745 CACACTAGGGATTCGGGGGA 60.690 60.000 0.00 0.00 0.00 4.81
2357 8214 1.830145 CACACTAGGGATTCGGGGG 59.170 63.158 0.00 0.00 0.00 5.40
2358 8215 1.146263 GCACACTAGGGATTCGGGG 59.854 63.158 0.00 0.00 0.00 5.73
2359 8216 0.462047 GTGCACACTAGGGATTCGGG 60.462 60.000 13.17 0.00 0.00 5.14
2360 8217 0.462047 GGTGCACACTAGGGATTCGG 60.462 60.000 20.43 0.00 0.00 4.30
2361 8218 0.462047 GGGTGCACACTAGGGATTCG 60.462 60.000 20.43 0.00 0.00 3.34
2362 8219 0.618458 TGGGTGCACACTAGGGATTC 59.382 55.000 21.89 0.00 0.00 2.52
2363 8220 0.328258 GTGGGTGCACACTAGGGATT 59.672 55.000 21.89 0.00 38.32 3.01
2364 8221 1.991230 GTGGGTGCACACTAGGGAT 59.009 57.895 21.89 0.00 38.32 3.85
2365 8222 3.478780 GTGGGTGCACACTAGGGA 58.521 61.111 21.89 0.00 38.32 4.20
2371 8228 1.166531 GGAGACAAGTGGGTGCACAC 61.167 60.000 20.43 17.25 41.63 3.82
2372 8229 1.148273 GGAGACAAGTGGGTGCACA 59.852 57.895 20.43 0.00 0.00 4.57
2373 8230 1.600916 GGGAGACAAGTGGGTGCAC 60.601 63.158 8.80 8.80 0.00 4.57
2374 8231 2.829384 GGGGAGACAAGTGGGTGCA 61.829 63.158 0.00 0.00 0.00 4.57
2375 8232 2.034221 GGGGAGACAAGTGGGTGC 59.966 66.667 0.00 0.00 0.00 5.01
2376 8233 2.757077 GGGGGAGACAAGTGGGTG 59.243 66.667 0.00 0.00 0.00 4.61
2377 8234 2.928396 CGGGGGAGACAAGTGGGT 60.928 66.667 0.00 0.00 0.00 4.51
2378 8235 2.606519 TCGGGGGAGACAAGTGGG 60.607 66.667 0.00 0.00 0.00 4.61
2379 8236 2.663196 GTCGGGGGAGACAAGTGG 59.337 66.667 0.00 0.00 40.65 4.00
2380 8237 1.889530 GAGGTCGGGGGAGACAAGTG 61.890 65.000 0.00 0.00 42.62 3.16
2381 8238 1.609794 GAGGTCGGGGGAGACAAGT 60.610 63.158 0.00 0.00 42.62 3.16
2382 8239 0.905337 AAGAGGTCGGGGGAGACAAG 60.905 60.000 0.00 0.00 42.62 3.16
2383 8240 0.473117 AAAGAGGTCGGGGGAGACAA 60.473 55.000 0.00 0.00 42.62 3.18
2384 8241 0.903454 GAAAGAGGTCGGGGGAGACA 60.903 60.000 0.00 0.00 42.62 3.41
2385 8242 1.615165 GGAAAGAGGTCGGGGGAGAC 61.615 65.000 0.00 0.00 40.25 3.36
2386 8243 1.305887 GGAAAGAGGTCGGGGGAGA 60.306 63.158 0.00 0.00 0.00 3.71
2387 8244 2.368011 GGGAAAGAGGTCGGGGGAG 61.368 68.421 0.00 0.00 0.00 4.30
2388 8245 2.285144 GGGAAAGAGGTCGGGGGA 60.285 66.667 0.00 0.00 0.00 4.81
2389 8246 2.285442 AGGGAAAGAGGTCGGGGG 60.285 66.667 0.00 0.00 0.00 5.40
2390 8247 2.722201 CGAGGGAAAGAGGTCGGGG 61.722 68.421 0.00 0.00 0.00 5.73
2391 8248 2.893398 CGAGGGAAAGAGGTCGGG 59.107 66.667 0.00 0.00 0.00 5.14
2392 8249 2.184579 GCGAGGGAAAGAGGTCGG 59.815 66.667 0.00 0.00 32.99 4.79
2393 8250 2.184579 GGCGAGGGAAAGAGGTCG 59.815 66.667 0.00 0.00 35.51 4.79
2394 8251 1.079057 GTGGCGAGGGAAAGAGGTC 60.079 63.158 0.00 0.00 0.00 3.85
2395 8252 2.593956 GGTGGCGAGGGAAAGAGGT 61.594 63.158 0.00 0.00 0.00 3.85
2396 8253 2.269241 GGTGGCGAGGGAAAGAGG 59.731 66.667 0.00 0.00 0.00 3.69
2397 8254 2.125512 CGGTGGCGAGGGAAAGAG 60.126 66.667 0.00 0.00 0.00 2.85
2398 8255 2.920912 ACGGTGGCGAGGGAAAGA 60.921 61.111 0.00 0.00 0.00 2.52
2399 8256 2.434359 GACGGTGGCGAGGGAAAG 60.434 66.667 0.00 0.00 0.00 2.62
2400 8257 4.367023 CGACGGTGGCGAGGGAAA 62.367 66.667 0.00 0.00 0.00 3.13
2408 8265 4.072088 CTTTGTCGCGACGGTGGC 62.072 66.667 31.88 10.00 0.00 5.01
2409 8266 4.072088 GCTTTGTCGCGACGGTGG 62.072 66.667 31.88 21.91 0.00 4.61
2410 8267 4.072088 GGCTTTGTCGCGACGGTG 62.072 66.667 31.88 23.65 0.00 4.94
2417 8274 3.423154 CTGGTCGGGCTTTGTCGC 61.423 66.667 0.00 0.00 0.00 5.19
2418 8275 3.423154 GCTGGTCGGGCTTTGTCG 61.423 66.667 0.00 0.00 0.00 4.35
2419 8276 3.423154 CGCTGGTCGGGCTTTGTC 61.423 66.667 0.00 0.00 33.78 3.18
2420 8277 3.767630 AACGCTGGTCGGGCTTTGT 62.768 57.895 0.00 0.00 43.86 2.83
2421 8278 2.978010 AACGCTGGTCGGGCTTTG 60.978 61.111 0.00 0.00 43.86 2.77
2422 8279 2.978010 CAACGCTGGTCGGGCTTT 60.978 61.111 0.00 0.00 43.86 3.51
2432 8289 2.034879 CCTACTGCCACCAACGCTG 61.035 63.158 0.00 0.00 0.00 5.18
2433 8290 2.347490 CCTACTGCCACCAACGCT 59.653 61.111 0.00 0.00 0.00 5.07
2434 8291 2.536997 ATCCCTACTGCCACCAACGC 62.537 60.000 0.00 0.00 0.00 4.84
2435 8292 0.462047 GATCCCTACTGCCACCAACG 60.462 60.000 0.00 0.00 0.00 4.10
2436 8293 0.912486 AGATCCCTACTGCCACCAAC 59.088 55.000 0.00 0.00 0.00 3.77
2437 8294 3.417330 AGATCCCTACTGCCACCAA 57.583 52.632 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.