Multiple sequence alignment - TraesCS3B01G049400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G049400 chr3B 100.000 2699 0 0 1 2699 24932342 24935040 0.000000e+00 4985
1 TraesCS3B01G049400 chr3B 79.448 652 103 14 1013 1657 30363602 30364229 1.480000e-117 433
2 TraesCS3B01G049400 chr3B 79.237 655 99 19 1013 1657 29976626 29977253 3.210000e-114 422
3 TraesCS3B01G049400 chr3B 79.785 465 75 8 1197 1657 29981207 29981656 1.210000e-83 320
4 TraesCS3B01G049400 chr3D 85.994 1785 169 28 282 2015 17361277 17363031 0.000000e+00 1836
5 TraesCS3B01G049400 chr3D 82.875 1092 147 20 670 1743 17533165 17532096 0.000000e+00 944
6 TraesCS3B01G049400 chr3D 90.120 668 55 9 2035 2699 17363551 17364210 0.000000e+00 857
7 TraesCS3B01G049400 chr3D 82.918 562 48 20 2 523 17528336 17527783 1.890000e-126 462
8 TraesCS3B01G049400 chr3D 84.753 446 38 12 100 523 17533849 17533412 1.160000e-113 420
9 TraesCS3B01G049400 chr3D 80.600 433 68 8 967 1392 11335686 11336109 1.210000e-83 320
10 TraesCS3B01G049400 chr3D 82.609 322 35 9 665 985 17527548 17527247 5.730000e-67 265
11 TraesCS3B01G049400 chr3D 88.350 103 12 0 1173 1275 17527244 17527142 1.010000e-24 124
12 TraesCS3B01G049400 chr3A 85.592 1402 129 27 665 2015 19486432 19485053 0.000000e+00 1402
13 TraesCS3B01G049400 chr3A 83.608 1092 139 19 667 1743 19357266 19358332 0.000000e+00 989
14 TraesCS3B01G049400 chr3A 89.767 645 56 7 2035 2675 19484636 19483998 0.000000e+00 817
15 TraesCS3B01G049400 chr3A 82.983 523 49 14 3 490 19487085 19486568 1.150000e-118 436
16 TraesCS3B01G049400 chr3A 77.855 718 119 13 1015 1719 26413685 26414375 2.500000e-110 409
17 TraesCS3B01G049400 chr3A 77.893 579 78 24 1173 1722 19283677 19284234 5.610000e-82 315
18 TraesCS3B01G049400 chr3A 77.799 527 83 14 1238 1752 26449965 26450469 7.310000e-76 294
19 TraesCS3B01G049400 chr3A 74.725 728 139 23 1007 1718 26245526 26246224 1.580000e-72 283
20 TraesCS3B01G049400 chr3A 81.657 338 29 11 212 523 19356365 19356695 1.600000e-62 250
21 TraesCS3B01G049400 chr3A 92.708 96 6 1 114 209 19356031 19356125 1.300000e-28 137
22 TraesCS3B01G049400 chr7B 73.038 497 96 17 1077 1567 64280275 64280739 1.010000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G049400 chr3B 24932342 24935040 2698 False 4985.000000 4985 100.000 1 2699 1 chr3B.!!$F1 2698
1 TraesCS3B01G049400 chr3B 30363602 30364229 627 False 433.000000 433 79.448 1013 1657 1 chr3B.!!$F2 644
2 TraesCS3B01G049400 chr3B 29976626 29981656 5030 False 371.000000 422 79.511 1013 1657 2 chr3B.!!$F3 644
3 TraesCS3B01G049400 chr3D 17361277 17364210 2933 False 1346.500000 1836 88.057 282 2699 2 chr3D.!!$F2 2417
4 TraesCS3B01G049400 chr3D 17527142 17533849 6707 True 443.000000 944 84.301 2 1743 5 chr3D.!!$R1 1741
5 TraesCS3B01G049400 chr3A 19483998 19487085 3087 True 885.000000 1402 86.114 3 2675 3 chr3A.!!$R1 2672
6 TraesCS3B01G049400 chr3A 19356031 19358332 2301 False 458.666667 989 85.991 114 1743 3 chr3A.!!$F5 1629
7 TraesCS3B01G049400 chr3A 26413685 26414375 690 False 409.000000 409 77.855 1015 1719 1 chr3A.!!$F3 704
8 TraesCS3B01G049400 chr3A 19283677 19284234 557 False 315.000000 315 77.893 1173 1722 1 chr3A.!!$F1 549
9 TraesCS3B01G049400 chr3A 26449965 26450469 504 False 294.000000 294 77.799 1238 1752 1 chr3A.!!$F4 514
10 TraesCS3B01G049400 chr3A 26245526 26246224 698 False 283.000000 283 74.725 1007 1718 1 chr3A.!!$F2 711

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
856 1592 0.112412 AGCGGTGGTTGAGGGAATTT 59.888 50.0 0.0 0.0 0.0 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2563 8633 0.976641 TCGAGCACATCTCCTGGTTT 59.023 50.0 0.0 0.0 38.62 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.458779 AGCGACACTTTGCTTTTATTGTTTC 59.541 36.000 0.00 0.00 39.78 2.78
36 37 5.523552 ACACTTTGCTTTTATTGTTTCCTGC 59.476 36.000 0.00 0.00 0.00 4.85
43 44 6.159293 GCTTTTATTGTTTCCTGCTTAAGCT 58.841 36.000 26.90 7.12 42.66 3.74
51 52 4.634012 TTCCTGCTTAAGCTACCAAGAA 57.366 40.909 26.90 16.43 42.66 2.52
62 63 5.695851 AGCTACCAAGAACTGAAAACATG 57.304 39.130 0.00 0.00 0.00 3.21
76 77 1.341080 AACATGCCTTGAAACTGGGG 58.659 50.000 0.00 0.00 0.00 4.96
77 78 0.188342 ACATGCCTTGAAACTGGGGT 59.812 50.000 0.00 0.00 0.00 4.95
102 115 1.133325 TGGCCCTTAGTTTTTCAGCCA 60.133 47.619 0.00 0.00 46.16 4.75
155 168 1.298014 GCCACTGTCTCCCCTTCTG 59.702 63.158 0.00 0.00 0.00 3.02
194 207 3.648982 CGTGCTCGTTGGCAAGCA 61.649 61.111 8.22 8.22 45.83 3.91
201 214 2.192861 CGTTGGCAAGCAACCTCCA 61.193 57.895 0.00 0.00 0.00 3.86
240 490 2.286872 GTCAGGCACCATTGATCTCTG 58.713 52.381 0.00 0.00 0.00 3.35
279 529 2.220479 GAGGTTACTCGCCGCTAATT 57.780 50.000 0.00 0.00 33.35 1.40
328 598 0.673644 TAACTCTGGAAAGGCTGCGC 60.674 55.000 0.00 0.00 0.00 6.09
404 674 7.203255 AGAATCGTTTTTCTTTTCCCTGTAG 57.797 36.000 0.00 0.00 31.94 2.74
600 1305 6.701841 TCTTTTTCATCGGATACTGACATAGC 59.298 38.462 0.00 0.00 0.00 2.97
625 1330 4.422073 ACCTGTCAAGTCTGAATGTTGA 57.578 40.909 0.00 0.00 31.88 3.18
662 1377 4.929808 TCTGGCATCTAAAACTTTCTCGAC 59.070 41.667 0.00 0.00 0.00 4.20
677 1408 4.352600 TCTCGACGAAGGAATCTTGTAC 57.647 45.455 0.00 0.00 32.52 2.90
712 1445 2.311124 AAGCATGAAGTAGCCGGTAC 57.689 50.000 1.90 4.64 0.00 3.34
765 1499 1.147153 TCACATCACGGGCACACAA 59.853 52.632 0.00 0.00 0.00 3.33
774 1508 0.888736 CGGGCACACAAAGGTCATGA 60.889 55.000 0.00 0.00 0.00 3.07
806 1542 2.682856 CCCGTCAATGGTGTTAGGATTG 59.317 50.000 0.00 0.00 0.00 2.67
827 1563 1.672881 GAGATTCAGAAACCATGGCCG 59.327 52.381 13.04 0.00 0.00 6.13
856 1592 0.112412 AGCGGTGGTTGAGGGAATTT 59.888 50.000 0.00 0.00 0.00 1.82
917 1653 3.133362 TGTTCGTACCACCATAGGATTCC 59.867 47.826 0.00 0.00 0.00 3.01
1008 1748 4.406003 TCTTCTTCTGTTCCTATGGCTACC 59.594 45.833 0.00 0.00 0.00 3.18
1011 1751 3.116096 TCTGTTCCTATGGCTACCACT 57.884 47.619 0.00 0.00 35.80 4.00
1037 1777 2.561569 CTGGTTCTTGGTGTTCGTCTT 58.438 47.619 0.00 0.00 0.00 3.01
1102 1848 3.801997 ATGGGGAAGGCTGCTCGG 61.802 66.667 0.00 0.00 0.00 4.63
1140 1886 0.548031 GCATCCTCACCATCTCCCAA 59.452 55.000 0.00 0.00 0.00 4.12
1152 1898 1.672356 CTCCCAACCGTTCTGGCTG 60.672 63.158 0.00 0.00 43.94 4.85
1156 1902 1.966451 CAACCGTTCTGGCTGTCCC 60.966 63.158 0.00 0.00 43.94 4.46
1158 1904 1.990160 AACCGTTCTGGCTGTCCCAA 61.990 55.000 0.00 0.00 44.81 4.12
1171 1917 1.988015 TCCCAATTGGAGACGGGAC 59.012 57.895 26.60 0.00 42.94 4.46
1213 1962 0.878523 TGAGGTCGGTTGCTTCAACG 60.879 55.000 3.93 0.00 44.36 4.10
1218 1967 2.335011 GGTTGCTTCAACGGCACC 59.665 61.111 3.93 0.00 44.36 5.01
1301 2059 2.050533 TTTGCGCGTGGTTGATGC 60.051 55.556 8.43 0.00 0.00 3.91
1313 2092 4.201753 CGTGGTTGATGCACATAAAGAGAG 60.202 45.833 0.00 0.00 0.00 3.20
1350 2129 1.980232 CAGCAGCTGCCATTTCCCA 60.980 57.895 34.39 0.00 43.38 4.37
1392 2171 2.337361 GGCACTGCCGTTTAAGGTT 58.663 52.632 3.73 0.00 39.62 3.50
1393 2172 0.039527 GGCACTGCCGTTTAAGGTTG 60.040 55.000 3.73 0.00 39.62 3.77
1463 6661 3.986006 TCCGGACGTGTCACTGGC 61.986 66.667 0.00 0.00 0.00 4.85
1488 6686 1.264749 TGAGATGTGGGAACGGGAGG 61.265 60.000 0.00 0.00 0.00 4.30
1494 6692 1.460689 TGGGAACGGGAGGAACACT 60.461 57.895 0.00 0.00 0.00 3.55
1496 6694 0.978907 GGGAACGGGAGGAACACTTA 59.021 55.000 0.00 0.00 0.00 2.24
1524 6724 2.962253 GGAGTGCGCTACGATGCC 60.962 66.667 9.73 4.09 0.00 4.40
1539 6739 0.986019 ATGCCACCGGGAACTATGGA 60.986 55.000 6.32 0.00 35.57 3.41
1567 6767 0.747283 CTTGGAGGGCTGTGATGCTC 60.747 60.000 0.00 0.00 0.00 4.26
1570 6770 3.318191 AGGGCTGTGATGCTCTCC 58.682 61.111 0.00 0.00 40.13 3.71
1579 6779 2.755876 ATGCTCTCCTCGTGCCGA 60.756 61.111 0.00 0.00 0.00 5.54
1735 6960 0.739561 CTAGGACGTGGAGTGCCTAC 59.260 60.000 0.00 0.00 42.70 3.18
1785 7018 8.539062 GATCAAACAATCGAACATGACATTAG 57.461 34.615 0.00 0.00 0.00 1.73
1810 7043 6.575254 GCCGAGGATTAGGATGAAGTTGATAT 60.575 42.308 0.00 0.00 0.00 1.63
1884 7382 3.576550 TGAAGTCGGCCATATATACAGCA 59.423 43.478 2.24 0.00 0.00 4.41
1912 7410 2.358898 GGCATCACACACTTGTTCAGTT 59.641 45.455 0.00 0.00 31.66 3.16
1922 7420 5.702670 CACACTTGTTCAGTTATCCAGTCAT 59.297 40.000 0.00 0.00 30.92 3.06
1978 7485 2.600792 GCACTTTCAGCTTCAGACAACG 60.601 50.000 0.00 0.00 0.00 4.10
1985 7492 4.820897 TCAGCTTCAGACAACGTATCAAT 58.179 39.130 0.00 0.00 0.00 2.57
1988 7495 6.204688 TCAGCTTCAGACAACGTATCAATTTT 59.795 34.615 0.00 0.00 0.00 1.82
2018 8034 3.859411 TTTGGATTGGTTGGATTACGC 57.141 42.857 0.00 0.00 0.00 4.42
2116 8146 1.829533 CCAGCTGTTGCCACAACCT 60.830 57.895 13.81 0.00 40.80 3.50
2131 8163 2.277084 CAACCTATGTTAGCCCGTGTC 58.723 52.381 0.00 0.00 32.09 3.67
2132 8164 1.861982 ACCTATGTTAGCCCGTGTCT 58.138 50.000 0.00 0.00 0.00 3.41
2133 8165 2.185387 ACCTATGTTAGCCCGTGTCTT 58.815 47.619 0.00 0.00 0.00 3.01
2218 8282 6.697019 GCTTTAAAAAGTGCACAAGAGATTGA 59.303 34.615 21.04 0.00 38.28 2.57
2563 8633 6.687081 AAGAACGAAACATAAAACTGACCA 57.313 33.333 0.00 0.00 0.00 4.02
2580 8650 1.271597 ACCAAACCAGGAGATGTGCTC 60.272 52.381 0.00 0.00 43.17 4.26
2583 8653 1.198713 AACCAGGAGATGTGCTCGAT 58.801 50.000 0.00 0.00 44.91 3.59
2613 8683 2.484264 GCGTCCTCTTTTGTGTTATGCT 59.516 45.455 0.00 0.00 0.00 3.79
2619 8689 5.181811 TCCTCTTTTGTGTTATGCTGACATG 59.818 40.000 0.00 0.00 37.04 3.21
2675 8745 1.208293 TGCAAACCTTGTTTTGGGTCC 59.792 47.619 0.00 0.00 37.02 4.46
2676 8746 1.804746 GCAAACCTTGTTTTGGGTCCG 60.805 52.381 0.00 0.00 37.02 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 6.292328 GCAGGAAACAATAAAAGCAAAGTGTC 60.292 38.462 0.00 0.00 0.00 3.67
12 13 5.523552 GCAGGAAACAATAAAAGCAAAGTGT 59.476 36.000 0.00 0.00 0.00 3.55
15 16 6.849588 AAGCAGGAAACAATAAAAGCAAAG 57.150 33.333 0.00 0.00 0.00 2.77
32 33 3.686726 CAGTTCTTGGTAGCTTAAGCAGG 59.313 47.826 28.39 9.10 45.16 4.85
36 37 7.259290 TGTTTTCAGTTCTTGGTAGCTTAAG 57.741 36.000 0.00 0.00 0.00 1.85
43 44 4.469657 AGGCATGTTTTCAGTTCTTGGTA 58.530 39.130 0.00 0.00 0.00 3.25
51 52 4.441913 CCAGTTTCAAGGCATGTTTTCAGT 60.442 41.667 0.00 0.00 0.00 3.41
82 83 1.133325 TGGCTGAAAAACTAAGGGCCA 60.133 47.619 6.18 0.00 44.55 5.36
118 131 1.460504 CATGTTGCATCTCAGCCACT 58.539 50.000 0.00 0.00 31.94 4.00
119 132 0.179145 GCATGTTGCATCTCAGCCAC 60.179 55.000 0.00 0.00 44.26 5.01
155 168 4.491602 CGAGAACAAAACGAGATGAGATGC 60.492 45.833 0.00 0.00 0.00 3.91
201 214 5.468540 TGACAGAAACACTACAGTATGCT 57.531 39.130 0.00 0.00 42.53 3.79
240 490 1.302832 CTGGAGTTGGGTGGAGCAC 60.303 63.158 0.00 0.00 0.00 4.40
328 598 1.539065 CCTGTTATGTGCTAGGAGCGG 60.539 57.143 0.00 0.00 46.26 5.52
339 609 0.685097 ACGGAGTGCACCTGTTATGT 59.315 50.000 14.63 0.00 42.51 2.29
404 674 7.439655 GGATAGGTTTGTACAGAGATCACATTC 59.560 40.741 0.00 0.00 0.00 2.67
471 743 7.372396 CGTCGACCAAAAATACATATTAAGCAC 59.628 37.037 10.58 0.00 0.00 4.40
472 744 7.278203 TCGTCGACCAAAAATACATATTAAGCA 59.722 33.333 10.58 0.00 0.00 3.91
473 745 7.623770 TCGTCGACCAAAAATACATATTAAGC 58.376 34.615 10.58 0.00 0.00 3.09
505 780 5.123979 GCAAATTTTAGTCCAGACGGAGATT 59.876 40.000 0.00 0.00 43.99 2.40
506 781 4.636206 GCAAATTTTAGTCCAGACGGAGAT 59.364 41.667 0.00 0.00 43.99 2.75
507 782 4.000988 GCAAATTTTAGTCCAGACGGAGA 58.999 43.478 0.00 0.00 43.99 3.71
508 783 3.751175 TGCAAATTTTAGTCCAGACGGAG 59.249 43.478 0.00 0.00 43.99 4.63
509 784 3.500680 GTGCAAATTTTAGTCCAGACGGA 59.499 43.478 0.00 0.00 39.79 4.69
600 1305 6.427853 TCAACATTCAGACTTGACAGGTAATG 59.572 38.462 9.11 9.11 31.71 1.90
638 1343 4.929808 TCGAGAAAGTTTTAGATGCCAGAC 59.070 41.667 0.00 0.00 0.00 3.51
662 1377 7.593273 CAGCTATCTAAGTACAAGATTCCTTCG 59.407 40.741 13.94 0.00 35.36 3.79
677 1408 6.915544 TCATGCTTTTGTCAGCTATCTAAG 57.084 37.500 0.00 0.00 40.79 2.18
712 1445 2.561569 CTTATAGGTTGGCTGGTTCCG 58.438 52.381 0.00 0.00 0.00 4.30
718 1452 3.144506 CTGGATGCTTATAGGTTGGCTG 58.855 50.000 0.00 0.00 0.00 4.85
720 1454 2.158608 ACCTGGATGCTTATAGGTTGGC 60.159 50.000 0.00 0.00 40.51 4.52
724 1458 4.413520 ACATGAACCTGGATGCTTATAGGT 59.586 41.667 0.00 0.00 45.07 3.08
765 1499 3.435601 GGGTAAGCCATCATCATGACCTT 60.436 47.826 0.00 0.00 36.17 3.50
774 1508 2.575532 CATTGACGGGTAAGCCATCAT 58.424 47.619 0.00 0.00 33.26 2.45
806 1542 2.027385 GGCCATGGTTTCTGAATCTCC 58.973 52.381 14.67 0.00 0.00 3.71
856 1592 2.035961 GGCTAAGCTATCGTCATCCACA 59.964 50.000 0.00 0.00 0.00 4.17
917 1653 7.042456 CGTGGTTGAAGAAAGATATATGTGGAG 60.042 40.741 0.00 0.00 0.00 3.86
1008 1748 1.271054 ACCAAGAACCAGCAGCTAGTG 60.271 52.381 0.00 0.00 0.00 2.74
1011 1751 0.764890 ACACCAAGAACCAGCAGCTA 59.235 50.000 0.00 0.00 0.00 3.32
1037 1777 0.912006 TGGCAGCCACCATACTACCA 60.912 55.000 11.22 0.00 33.75 3.25
1102 1848 3.195698 GCACGTCTTGGCCGATCC 61.196 66.667 0.00 0.00 0.00 3.36
1124 1870 1.264749 CGGTTGGGAGATGGTGAGGA 61.265 60.000 0.00 0.00 0.00 3.71
1140 1886 1.779061 ATTGGGACAGCCAGAACGGT 61.779 55.000 0.00 0.00 42.39 4.83
1152 1898 1.988015 TCCCGTCTCCAATTGGGAC 59.012 57.895 24.29 24.68 45.66 4.46
1156 1902 1.571919 GATCGTCCCGTCTCCAATTG 58.428 55.000 0.00 0.00 0.00 2.32
1158 1904 1.035932 ACGATCGTCCCGTCTCCAAT 61.036 55.000 16.60 0.00 34.97 3.16
1171 1917 0.037697 TCCAAAGGACCACACGATCG 60.038 55.000 14.88 14.88 0.00 3.69
1185 1931 2.035321 GCAACCGACCTCAAAATCCAAA 59.965 45.455 0.00 0.00 0.00 3.28
1213 1962 2.440247 CCGGAGAATTGGGGTGCC 60.440 66.667 0.00 0.00 0.00 5.01
1218 1967 0.179062 CAGAGCTCCGGAGAATTGGG 60.179 60.000 35.69 14.11 0.00 4.12
1244 1993 0.099436 GTCCATGATCGCAAAGCCAC 59.901 55.000 0.00 0.00 0.00 5.01
1290 2048 3.684305 TCTCTTTATGTGCATCAACCACG 59.316 43.478 0.00 0.00 36.01 4.94
1293 2051 5.293079 GTCTCTCTCTTTATGTGCATCAACC 59.707 44.000 0.00 0.00 0.00 3.77
1301 2059 6.153067 ACGTTGAAGTCTCTCTCTTTATGTG 58.847 40.000 0.00 0.00 0.00 3.21
1392 2171 3.172106 TTCAGGTTGGCGGGGTCA 61.172 61.111 0.00 0.00 0.00 4.02
1393 2172 2.671963 GTTCAGGTTGGCGGGGTC 60.672 66.667 0.00 0.00 0.00 4.46
1445 2240 2.049433 CCAGTGACACGTCCGGAC 60.049 66.667 25.28 25.28 0.00 4.79
1446 2241 3.986006 GCCAGTGACACGTCCGGA 61.986 66.667 0.00 0.00 0.00 5.14
1449 2244 3.916392 CTCCGCCAGTGACACGTCC 62.916 68.421 0.00 0.00 0.00 4.79
1450 2245 2.430921 CTCCGCCAGTGACACGTC 60.431 66.667 0.00 0.00 0.00 4.34
1451 2246 3.991051 CCTCCGCCAGTGACACGT 61.991 66.667 0.00 0.00 0.00 4.49
1452 2247 3.991051 ACCTCCGCCAGTGACACG 61.991 66.667 0.00 0.00 0.00 4.49
1453 2248 2.357517 CACCTCCGCCAGTGACAC 60.358 66.667 0.00 0.00 36.01 3.67
1454 2249 2.523168 TCACCTCCGCCAGTGACA 60.523 61.111 0.00 0.00 38.07 3.58
1455 2250 1.608717 ATCTCACCTCCGCCAGTGAC 61.609 60.000 0.00 0.00 38.07 3.67
1456 2251 1.305297 ATCTCACCTCCGCCAGTGA 60.305 57.895 0.00 0.00 40.61 3.41
1457 2252 1.153489 CATCTCACCTCCGCCAGTG 60.153 63.158 0.00 0.00 35.24 3.66
1458 2253 1.610673 ACATCTCACCTCCGCCAGT 60.611 57.895 0.00 0.00 0.00 4.00
1459 2254 1.153489 CACATCTCACCTCCGCCAG 60.153 63.158 0.00 0.00 0.00 4.85
1463 6661 0.108138 GTTCCCACATCTCACCTCCG 60.108 60.000 0.00 0.00 0.00 4.63
1488 6686 1.343821 CGCGCGGACATAAGTGTTC 59.656 57.895 24.84 0.00 39.09 3.18
1524 6724 1.146263 GCCTCCATAGTTCCCGGTG 59.854 63.158 0.00 0.00 0.00 4.94
1579 6779 2.507944 GCCTGACGAGCCCATCAT 59.492 61.111 0.00 0.00 0.00 2.45
1735 6960 7.170828 TCGATTATGGAATCCATGAAAGTTACG 59.829 37.037 24.13 16.01 44.84 3.18
1772 6998 3.179443 TCCTCGGCTAATGTCATGTTC 57.821 47.619 0.00 0.00 0.00 3.18
1779 7005 4.160329 TCATCCTAATCCTCGGCTAATGT 58.840 43.478 0.00 0.00 0.00 2.71
1782 7015 4.223953 ACTTCATCCTAATCCTCGGCTAA 58.776 43.478 0.00 0.00 0.00 3.09
1785 7018 3.134458 CAACTTCATCCTAATCCTCGGC 58.866 50.000 0.00 0.00 0.00 5.54
1810 7043 8.359642 CCTGTTTGATTCACTGGATTTCTAAAA 58.640 33.333 0.00 0.00 35.72 1.52
1884 7382 5.726980 ACAAGTGTGTGATGCCAATTTAT 57.273 34.783 0.00 0.00 36.31 1.40
1912 7410 4.645136 GTGTGACTGGTCTATGACTGGATA 59.355 45.833 2.38 0.00 32.47 2.59
1957 7464 2.600792 CGTTGTCTGAAGCTGAAAGTGC 60.601 50.000 0.00 0.00 35.30 4.40
1988 7495 5.045578 TCCAACCAATCCAAAAGTTCCAAAA 60.046 36.000 0.00 0.00 0.00 2.44
2091 8121 2.806009 GGCAACAGCTGGCCCAAAA 61.806 57.895 20.05 0.00 44.86 2.44
2183 8247 8.977505 TGTGCACTTTTTAAAGCTGATATTTTC 58.022 29.630 19.41 0.00 39.63 2.29
2194 8258 7.380602 CCTCAATCTCTTGTGCACTTTTTAAAG 59.619 37.037 19.41 11.91 36.61 1.85
2546 8616 5.983118 CCTGGTTTGGTCAGTTTTATGTTTC 59.017 40.000 0.00 0.00 0.00 2.78
2563 8633 0.976641 TCGAGCACATCTCCTGGTTT 59.023 50.000 0.00 0.00 38.62 3.27
2580 8650 3.032017 AGAGGACGCATAATTGGATCG 57.968 47.619 0.00 0.00 0.00 3.69
2583 8653 4.155826 CACAAAAGAGGACGCATAATTGGA 59.844 41.667 0.00 0.00 0.00 3.53
2613 8683 2.481289 TGACGCCCATTAACATGTCA 57.519 45.000 0.00 0.00 34.27 3.58
2619 8689 3.284617 ACCCTATTTGACGCCCATTAAC 58.715 45.455 0.00 0.00 0.00 2.01
2675 8745 1.078426 CCCACAACTAAGGGGCTCG 60.078 63.158 0.00 0.00 41.58 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.