Multiple sequence alignment - TraesCS3B01G049100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G049100 chr3B 100.000 2924 0 0 1 2924 24910564 24913487 0.000000e+00 5400.0
1 TraesCS3B01G049100 chr3B 98.454 841 12 1 2084 2924 525228843 525229682 0.000000e+00 1480.0
2 TraesCS3B01G049100 chr3B 98.098 841 16 0 2084 2924 291298570 291299410 0.000000e+00 1465.0
3 TraesCS3B01G049100 chr3B 82.451 359 27 17 704 1059 24900492 24900817 6.170000e-72 281.0
4 TraesCS3B01G049100 chr3B 93.333 60 4 0 599 658 114099901 114099842 4.010000e-14 89.8
5 TraesCS3B01G049100 chr3D 92.456 1087 56 14 853 1939 17345319 17346379 0.000000e+00 1530.0
6 TraesCS3B01G049100 chr3D 85.294 680 61 15 780 1456 17340620 17341263 0.000000e+00 665.0
7 TraesCS3B01G049100 chr3D 93.333 60 4 0 599 658 67725020 67725079 4.010000e-14 89.8
8 TraesCS3B01G049100 chr3D 90.909 55 1 2 2029 2083 17346594 17346644 1.450000e-08 71.3
9 TraesCS3B01G049100 chr3D 84.722 72 2 4 672 743 17329554 17329616 2.430000e-06 63.9
10 TraesCS3B01G049100 chr3A 91.362 1123 72 12 778 1894 19506853 19505750 0.000000e+00 1513.0
11 TraesCS3B01G049100 chr3A 94.667 75 3 1 415 489 19507404 19507331 6.620000e-22 115.0
12 TraesCS3B01G049100 chr3A 93.333 60 4 0 599 658 79451162 79451221 4.010000e-14 89.8
13 TraesCS3B01G049100 chr3A 79.021 143 9 9 1958 2083 19504737 19504599 8.690000e-11 78.7
14 TraesCS3B01G049100 chr4A 98.814 843 10 0 2082 2924 735782651 735783493 0.000000e+00 1502.0
15 TraesCS3B01G049100 chr4A 87.413 866 83 7 2084 2924 630149248 630148384 0.000000e+00 972.0
16 TraesCS3B01G049100 chr7B 98.216 841 15 0 2084 2924 91246113 91246953 0.000000e+00 1471.0
17 TraesCS3B01G049100 chr7B 98.098 841 16 0 2084 2924 254707290 254706450 0.000000e+00 1465.0
18 TraesCS3B01G049100 chr1B 97.983 843 16 1 2082 2924 636744569 636745410 0.000000e+00 1461.0
19 TraesCS3B01G049100 chr1B 95.098 408 20 0 1 408 279452181 279452588 0.000000e+00 643.0
20 TraesCS3B01G049100 chr2A 95.368 842 19 9 2083 2924 605116271 605117092 0.000000e+00 1321.0
21 TraesCS3B01G049100 chr2A 98.305 413 5 2 1 413 752788124 752787714 0.000000e+00 723.0
22 TraesCS3B01G049100 chr2A 93.333 60 4 0 599 658 73544569 73544510 4.010000e-14 89.8
23 TraesCS3B01G049100 chr7A 87.678 844 79 11 2084 2924 683633721 683634542 0.000000e+00 959.0
24 TraesCS3B01G049100 chr7A 86.736 867 86 8 2084 2924 47518495 47519358 0.000000e+00 937.0
25 TraesCS3B01G049100 chr6A 84.422 873 92 14 2084 2924 11654246 11655106 0.000000e+00 819.0
26 TraesCS3B01G049100 chr5A 99.020 408 4 0 1 408 547381792 547382199 0.000000e+00 732.0
27 TraesCS3B01G049100 chr2D 93.333 60 4 0 599 658 74150810 74150751 4.010000e-14 89.8
28 TraesCS3B01G049100 chr2B 88.889 72 4 3 599 670 113278940 113278873 5.190000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G049100 chr3B 24910564 24913487 2923 False 5400.00 5400 100.0000 1 2924 1 chr3B.!!$F2 2923
1 TraesCS3B01G049100 chr3B 525228843 525229682 839 False 1480.00 1480 98.4540 2084 2924 1 chr3B.!!$F4 840
2 TraesCS3B01G049100 chr3B 291298570 291299410 840 False 1465.00 1465 98.0980 2084 2924 1 chr3B.!!$F3 840
3 TraesCS3B01G049100 chr3D 17345319 17346644 1325 False 800.65 1530 91.6825 853 2083 2 chr3D.!!$F4 1230
4 TraesCS3B01G049100 chr3D 17340620 17341263 643 False 665.00 665 85.2940 780 1456 1 chr3D.!!$F2 676
5 TraesCS3B01G049100 chr3A 19504599 19507404 2805 True 568.90 1513 88.3500 415 2083 3 chr3A.!!$R1 1668
6 TraesCS3B01G049100 chr4A 735782651 735783493 842 False 1502.00 1502 98.8140 2082 2924 1 chr4A.!!$F1 842
7 TraesCS3B01G049100 chr4A 630148384 630149248 864 True 972.00 972 87.4130 2084 2924 1 chr4A.!!$R1 840
8 TraesCS3B01G049100 chr7B 91246113 91246953 840 False 1471.00 1471 98.2160 2084 2924 1 chr7B.!!$F1 840
9 TraesCS3B01G049100 chr7B 254706450 254707290 840 True 1465.00 1465 98.0980 2084 2924 1 chr7B.!!$R1 840
10 TraesCS3B01G049100 chr1B 636744569 636745410 841 False 1461.00 1461 97.9830 2082 2924 1 chr1B.!!$F2 842
11 TraesCS3B01G049100 chr2A 605116271 605117092 821 False 1321.00 1321 95.3680 2083 2924 1 chr2A.!!$F1 841
12 TraesCS3B01G049100 chr7A 683633721 683634542 821 False 959.00 959 87.6780 2084 2924 1 chr7A.!!$F2 840
13 TraesCS3B01G049100 chr7A 47518495 47519358 863 False 937.00 937 86.7360 2084 2924 1 chr7A.!!$F1 840
14 TraesCS3B01G049100 chr6A 11654246 11655106 860 False 819.00 819 84.4220 2084 2924 1 chr6A.!!$F1 840

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 225 0.032815 GCCGAGGATAGAAGTGCCTC 59.967 60.0 0.0 0.0 43.73 4.70 F
251 252 0.249868 GTGGCTCTTTTGGGGTTTGC 60.250 55.0 0.0 0.0 0.00 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1059 1258 0.028902 CCACGACGATGACGATGCTA 59.971 55.0 0.00 0.00 42.66 3.49 R
2052 3333 0.165944 GTTGGTGTCGATTGGCTTCG 59.834 55.0 4.38 4.38 40.46 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 4.874534 CATGCGGTGCTTGAAAGG 57.125 55.556 0.00 0.00 36.06 3.11
50 51 2.256391 CATGCGGTGCTTGAAAGGA 58.744 52.632 0.00 0.00 36.06 3.36
51 52 0.109597 CATGCGGTGCTTGAAAGGAC 60.110 55.000 6.18 6.18 45.39 3.85
55 56 3.668386 GTGCTTGAAAGGACCCCG 58.332 61.111 3.51 0.00 40.96 5.73
56 57 1.072505 GTGCTTGAAAGGACCCCGA 59.927 57.895 3.51 0.00 40.96 5.14
57 58 0.536460 GTGCTTGAAAGGACCCCGAA 60.536 55.000 3.51 0.00 40.96 4.30
58 59 0.250727 TGCTTGAAAGGACCCCGAAG 60.251 55.000 0.00 0.00 0.00 3.79
59 60 1.587043 GCTTGAAAGGACCCCGAAGC 61.587 60.000 0.00 0.00 0.00 3.86
60 61 1.298859 CTTGAAAGGACCCCGAAGCG 61.299 60.000 0.00 0.00 0.00 4.68
77 78 3.406559 GGACGCCGAGGCATTAAC 58.593 61.111 15.03 0.39 42.06 2.01
78 79 2.178235 GGACGCCGAGGCATTAACC 61.178 63.158 15.03 5.74 42.06 2.85
79 80 1.153429 GACGCCGAGGCATTAACCT 60.153 57.895 15.03 0.00 45.04 3.50
86 87 3.181526 AGGCATTAACCTCTGCAGC 57.818 52.632 9.47 0.00 40.18 5.25
87 88 0.622665 AGGCATTAACCTCTGCAGCT 59.377 50.000 9.47 0.00 40.18 4.24
88 89 1.005215 AGGCATTAACCTCTGCAGCTT 59.995 47.619 9.47 2.57 40.18 3.74
89 90 1.133790 GGCATTAACCTCTGCAGCTTG 59.866 52.381 9.47 1.88 40.18 4.01
90 91 1.133790 GCATTAACCTCTGCAGCTTGG 59.866 52.381 9.47 13.29 38.28 3.61
91 92 2.715046 CATTAACCTCTGCAGCTTGGA 58.285 47.619 21.39 0.33 0.00 3.53
92 93 2.185004 TTAACCTCTGCAGCTTGGAC 57.815 50.000 21.39 0.00 0.00 4.02
93 94 0.037326 TAACCTCTGCAGCTTGGACG 60.037 55.000 21.39 3.05 0.00 4.79
94 95 2.435586 CCTCTGCAGCTTGGACGG 60.436 66.667 9.47 0.00 0.00 4.79
95 96 3.123620 CTCTGCAGCTTGGACGGC 61.124 66.667 9.47 0.00 0.00 5.68
96 97 3.889134 CTCTGCAGCTTGGACGGCA 62.889 63.158 9.47 0.00 38.45 5.69
103 104 4.722700 CTTGGACGGCAGGGGGTG 62.723 72.222 0.00 0.00 0.00 4.61
140 141 3.127533 CGGAAGGGGCGCTTGAAG 61.128 66.667 22.39 8.52 0.00 3.02
141 142 2.351276 GGAAGGGGCGCTTGAAGA 59.649 61.111 22.39 0.00 0.00 2.87
142 143 1.077429 GGAAGGGGCGCTTGAAGAT 60.077 57.895 22.39 0.00 0.00 2.40
143 144 0.681243 GGAAGGGGCGCTTGAAGATT 60.681 55.000 22.39 0.00 0.00 2.40
144 145 0.453390 GAAGGGGCGCTTGAAGATTG 59.547 55.000 22.39 0.00 0.00 2.67
145 146 1.598701 AAGGGGCGCTTGAAGATTGC 61.599 55.000 16.69 0.00 0.00 3.56
146 147 2.491621 GGGCGCTTGAAGATTGCC 59.508 61.111 7.64 13.07 44.98 4.52
147 148 2.491621 GGCGCTTGAAGATTGCCC 59.508 61.111 7.64 0.00 39.83 5.36
148 149 2.100991 GCGCTTGAAGATTGCCCG 59.899 61.111 0.00 0.00 0.00 6.13
149 150 2.398554 GCGCTTGAAGATTGCCCGA 61.399 57.895 0.00 0.00 0.00 5.14
150 151 1.717937 CGCTTGAAGATTGCCCGAG 59.282 57.895 0.00 0.00 0.00 4.63
151 152 1.431036 GCTTGAAGATTGCCCGAGC 59.569 57.895 0.00 0.00 40.48 5.03
152 153 1.997928 GCTTGAAGATTGCCCGAGCC 61.998 60.000 0.00 0.00 38.69 4.70
153 154 0.677731 CTTGAAGATTGCCCGAGCCA 60.678 55.000 0.00 0.00 38.69 4.75
154 155 0.677731 TTGAAGATTGCCCGAGCCAG 60.678 55.000 0.00 0.00 38.69 4.85
155 156 2.439156 AAGATTGCCCGAGCCAGC 60.439 61.111 0.00 0.00 38.69 4.85
156 157 3.272364 AAGATTGCCCGAGCCAGCA 62.272 57.895 0.00 0.00 38.69 4.41
157 158 3.207669 GATTGCCCGAGCCAGCAG 61.208 66.667 0.00 0.00 40.73 4.24
158 159 3.984193 GATTGCCCGAGCCAGCAGT 62.984 63.158 0.00 0.00 40.73 4.40
159 160 3.984193 ATTGCCCGAGCCAGCAGTC 62.984 63.158 0.00 0.00 40.73 3.51
161 162 4.704833 GCCCGAGCCAGCAGTCAA 62.705 66.667 0.00 0.00 0.00 3.18
162 163 2.435586 CCCGAGCCAGCAGTCAAG 60.436 66.667 0.00 0.00 0.00 3.02
163 164 2.435586 CCGAGCCAGCAGTCAAGG 60.436 66.667 0.00 0.00 0.00 3.61
167 168 3.426568 GCCAGCAGTCAAGGCGAC 61.427 66.667 0.00 0.00 45.77 5.19
168 169 2.743928 CCAGCAGTCAAGGCGACC 60.744 66.667 0.00 0.00 46.69 4.79
169 170 3.114616 CAGCAGTCAAGGCGACCG 61.115 66.667 0.00 0.00 46.69 4.79
170 171 4.379243 AGCAGTCAAGGCGACCGG 62.379 66.667 0.00 0.00 46.69 5.28
195 196 1.602771 GGTAGCAGACCTGGGTTCC 59.397 63.158 0.00 0.00 45.89 3.62
196 197 1.602771 GTAGCAGACCTGGGTTCCC 59.397 63.158 0.00 0.12 0.00 3.97
197 198 1.615424 TAGCAGACCTGGGTTCCCC 60.615 63.158 5.34 0.00 45.71 4.81
207 208 2.834631 GGGTTCCCCATTAATGGCC 58.165 57.895 26.53 21.05 46.70 5.36
208 209 1.112916 GGGTTCCCCATTAATGGCCG 61.113 60.000 26.53 18.46 46.70 6.13
209 210 0.106419 GGTTCCCCATTAATGGCCGA 60.106 55.000 26.53 20.23 46.70 5.54
210 211 1.318576 GTTCCCCATTAATGGCCGAG 58.681 55.000 26.53 13.98 46.70 4.63
211 212 0.184933 TTCCCCATTAATGGCCGAGG 59.815 55.000 26.53 21.39 46.70 4.63
212 213 0.696143 TCCCCATTAATGGCCGAGGA 60.696 55.000 26.53 23.09 46.70 3.71
213 214 0.405585 CCCCATTAATGGCCGAGGAT 59.594 55.000 26.53 0.00 46.70 3.24
214 215 1.633432 CCCCATTAATGGCCGAGGATA 59.367 52.381 26.53 0.00 46.70 2.59
215 216 2.356125 CCCCATTAATGGCCGAGGATAG 60.356 54.545 26.53 11.00 46.70 2.08
216 217 2.571653 CCCATTAATGGCCGAGGATAGA 59.428 50.000 26.53 0.00 46.70 1.98
217 218 3.009033 CCCATTAATGGCCGAGGATAGAA 59.991 47.826 26.53 0.00 46.70 2.10
218 219 4.256920 CCATTAATGGCCGAGGATAGAAG 58.743 47.826 21.32 0.00 41.75 2.85
219 220 4.263068 CCATTAATGGCCGAGGATAGAAGT 60.263 45.833 21.32 0.00 41.75 3.01
220 221 2.918712 AATGGCCGAGGATAGAAGTG 57.081 50.000 0.00 0.00 0.00 3.16
221 222 0.394565 ATGGCCGAGGATAGAAGTGC 59.605 55.000 0.00 0.00 0.00 4.40
222 223 1.069935 GGCCGAGGATAGAAGTGCC 59.930 63.158 0.00 0.00 0.00 5.01
223 224 1.403687 GGCCGAGGATAGAAGTGCCT 61.404 60.000 0.00 0.00 34.61 4.75
224 225 0.032815 GCCGAGGATAGAAGTGCCTC 59.967 60.000 0.00 0.00 43.73 4.70
225 226 0.676736 CCGAGGATAGAAGTGCCTCC 59.323 60.000 0.00 0.00 44.19 4.30
226 227 0.676736 CGAGGATAGAAGTGCCTCCC 59.323 60.000 0.00 0.00 44.19 4.30
227 228 1.755977 CGAGGATAGAAGTGCCTCCCT 60.756 57.143 0.00 0.00 44.19 4.20
228 229 2.489255 CGAGGATAGAAGTGCCTCCCTA 60.489 54.545 0.00 0.00 44.19 3.53
229 230 3.785364 GAGGATAGAAGTGCCTCCCTAT 58.215 50.000 0.00 0.00 41.84 2.57
230 231 4.567958 CGAGGATAGAAGTGCCTCCCTATA 60.568 50.000 0.00 0.00 44.19 1.31
231 232 4.941713 AGGATAGAAGTGCCTCCCTATAG 58.058 47.826 0.00 0.00 0.00 1.31
232 233 4.027437 GGATAGAAGTGCCTCCCTATAGG 58.973 52.174 12.27 12.27 39.87 2.57
233 234 4.511294 GGATAGAAGTGCCTCCCTATAGGT 60.511 50.000 17.72 0.00 39.02 3.08
234 235 2.683768 AGAAGTGCCTCCCTATAGGTG 58.316 52.381 17.72 9.20 39.02 4.00
240 241 2.407340 CCTCCCTATAGGTGGCTCTT 57.593 55.000 17.72 0.00 42.31 2.85
241 242 2.695585 CCTCCCTATAGGTGGCTCTTT 58.304 52.381 17.72 0.00 42.31 2.52
242 243 3.049344 CCTCCCTATAGGTGGCTCTTTT 58.951 50.000 17.72 0.00 42.31 2.27
243 244 3.181450 CCTCCCTATAGGTGGCTCTTTTG 60.181 52.174 17.72 0.00 42.31 2.44
244 245 2.777692 TCCCTATAGGTGGCTCTTTTGG 59.222 50.000 17.72 0.00 36.75 3.28
245 246 2.158608 CCCTATAGGTGGCTCTTTTGGG 60.159 54.545 17.72 0.00 0.00 4.12
246 247 2.158608 CCTATAGGTGGCTCTTTTGGGG 60.159 54.545 10.96 0.00 0.00 4.96
247 248 1.382914 ATAGGTGGCTCTTTTGGGGT 58.617 50.000 0.00 0.00 0.00 4.95
248 249 1.154430 TAGGTGGCTCTTTTGGGGTT 58.846 50.000 0.00 0.00 0.00 4.11
249 250 0.264657 AGGTGGCTCTTTTGGGGTTT 59.735 50.000 0.00 0.00 0.00 3.27
250 251 0.392706 GGTGGCTCTTTTGGGGTTTG 59.607 55.000 0.00 0.00 0.00 2.93
251 252 0.249868 GTGGCTCTTTTGGGGTTTGC 60.250 55.000 0.00 0.00 0.00 3.68
252 253 1.006220 GGCTCTTTTGGGGTTTGCG 60.006 57.895 0.00 0.00 0.00 4.85
253 254 1.739667 GCTCTTTTGGGGTTTGCGT 59.260 52.632 0.00 0.00 0.00 5.24
254 255 0.318699 GCTCTTTTGGGGTTTGCGTC 60.319 55.000 0.00 0.00 0.00 5.19
255 256 1.028905 CTCTTTTGGGGTTTGCGTCA 58.971 50.000 0.00 0.00 0.00 4.35
256 257 1.001378 CTCTTTTGGGGTTTGCGTCAG 60.001 52.381 0.00 0.00 0.00 3.51
257 258 1.028905 CTTTTGGGGTTTGCGTCAGA 58.971 50.000 0.00 0.00 0.00 3.27
258 259 1.613437 CTTTTGGGGTTTGCGTCAGAT 59.387 47.619 0.00 0.00 0.00 2.90
259 260 1.243902 TTTGGGGTTTGCGTCAGATC 58.756 50.000 0.00 0.00 0.00 2.75
260 261 0.608035 TTGGGGTTTGCGTCAGATCC 60.608 55.000 0.00 0.00 0.00 3.36
261 262 1.002624 GGGGTTTGCGTCAGATCCA 60.003 57.895 2.93 0.00 0.00 3.41
262 263 1.026718 GGGGTTTGCGTCAGATCCAG 61.027 60.000 2.93 0.00 0.00 3.86
263 264 1.648467 GGGTTTGCGTCAGATCCAGC 61.648 60.000 0.00 0.00 0.00 4.85
264 265 1.421485 GTTTGCGTCAGATCCAGCG 59.579 57.895 0.00 0.00 0.00 5.18
265 266 1.741401 TTTGCGTCAGATCCAGCGG 60.741 57.895 0.00 0.00 0.00 5.52
266 267 3.664025 TTGCGTCAGATCCAGCGGG 62.664 63.158 0.00 0.00 0.00 6.13
267 268 4.148825 GCGTCAGATCCAGCGGGT 62.149 66.667 1.81 0.00 34.93 5.28
268 269 2.202797 CGTCAGATCCAGCGGGTG 60.203 66.667 1.81 0.00 34.93 4.61
269 270 2.710902 CGTCAGATCCAGCGGGTGA 61.711 63.158 9.09 0.00 34.93 4.02
270 271 1.596934 GTCAGATCCAGCGGGTGAA 59.403 57.895 9.09 0.00 34.93 3.18
271 272 0.460987 GTCAGATCCAGCGGGTGAAG 60.461 60.000 9.09 0.00 34.93 3.02
272 273 1.153289 CAGATCCAGCGGGTGAAGG 60.153 63.158 9.09 0.00 34.93 3.46
273 274 2.190578 GATCCAGCGGGTGAAGGG 59.809 66.667 9.09 0.00 34.93 3.95
274 275 3.406595 GATCCAGCGGGTGAAGGGG 62.407 68.421 9.09 0.00 34.93 4.79
275 276 4.974438 TCCAGCGGGTGAAGGGGT 62.974 66.667 9.09 0.00 34.93 4.95
276 277 4.722700 CCAGCGGGTGAAGGGGTG 62.723 72.222 9.09 0.00 0.00 4.61
277 278 4.722700 CAGCGGGTGAAGGGGTGG 62.723 72.222 0.00 0.00 0.00 4.61
278 279 4.974438 AGCGGGTGAAGGGGTGGA 62.974 66.667 0.00 0.00 0.00 4.02
279 280 4.410400 GCGGGTGAAGGGGTGGAG 62.410 72.222 0.00 0.00 0.00 3.86
280 281 4.410400 CGGGTGAAGGGGTGGAGC 62.410 72.222 0.00 0.00 0.00 4.70
281 282 2.936032 GGGTGAAGGGGTGGAGCT 60.936 66.667 0.00 0.00 0.00 4.09
282 283 2.352805 GGTGAAGGGGTGGAGCTG 59.647 66.667 0.00 0.00 0.00 4.24
283 284 2.352805 GTGAAGGGGTGGAGCTGG 59.647 66.667 0.00 0.00 0.00 4.85
284 285 2.935481 TGAAGGGGTGGAGCTGGG 60.935 66.667 0.00 0.00 0.00 4.45
285 286 3.732849 GAAGGGGTGGAGCTGGGG 61.733 72.222 0.00 0.00 0.00 4.96
296 297 4.633769 GCTGGGGCTGAAAGAGAG 57.366 61.111 0.00 0.00 34.07 3.20
297 298 1.077858 GCTGGGGCTGAAAGAGAGG 60.078 63.158 0.00 0.00 34.07 3.69
298 299 1.077858 CTGGGGCTGAAAGAGAGGC 60.078 63.158 0.00 0.00 34.07 4.70
299 300 1.845627 CTGGGGCTGAAAGAGAGGCA 61.846 60.000 0.00 0.00 37.74 4.75
300 301 1.077858 GGGGCTGAAAGAGAGGCAG 60.078 63.158 0.00 0.00 37.74 4.85
302 303 3.483959 GCTGAAAGAGAGGCAGCG 58.516 61.111 0.00 0.00 44.52 5.18
303 304 1.375268 GCTGAAAGAGAGGCAGCGT 60.375 57.895 0.00 0.00 44.52 5.07
304 305 1.633852 GCTGAAAGAGAGGCAGCGTG 61.634 60.000 0.00 0.00 44.52 5.34
305 306 1.004560 TGAAAGAGAGGCAGCGTGG 60.005 57.895 0.00 0.00 0.00 4.94
306 307 1.743252 GAAAGAGAGGCAGCGTGGG 60.743 63.158 0.00 0.00 0.00 4.61
307 308 3.909086 AAAGAGAGGCAGCGTGGGC 62.909 63.158 0.00 0.00 40.37 5.36
318 319 3.402681 CGTGGGCTGATGTCCCCT 61.403 66.667 0.00 0.00 43.24 4.79
319 320 2.971598 CGTGGGCTGATGTCCCCTT 61.972 63.158 0.00 0.00 43.24 3.95
320 321 1.379044 GTGGGCTGATGTCCCCTTG 60.379 63.158 0.00 0.00 43.24 3.61
321 322 2.440980 GGGCTGATGTCCCCTTGC 60.441 66.667 0.00 0.00 38.30 4.01
322 323 2.825836 GGCTGATGTCCCCTTGCG 60.826 66.667 0.00 0.00 0.00 4.85
323 324 2.045926 GCTGATGTCCCCTTGCGT 60.046 61.111 0.00 0.00 0.00 5.24
324 325 1.675641 GCTGATGTCCCCTTGCGTT 60.676 57.895 0.00 0.00 0.00 4.84
325 326 1.926511 GCTGATGTCCCCTTGCGTTG 61.927 60.000 0.00 0.00 0.00 4.10
326 327 1.303236 TGATGTCCCCTTGCGTTGG 60.303 57.895 0.00 0.00 0.00 3.77
327 328 1.002624 GATGTCCCCTTGCGTTGGA 60.003 57.895 0.00 0.00 0.00 3.53
329 330 3.047877 GTCCCCTTGCGTTGGACG 61.048 66.667 0.00 0.00 45.88 4.79
330 331 3.235481 TCCCCTTGCGTTGGACGA 61.235 61.111 4.46 0.00 46.05 4.20
331 332 3.047877 CCCCTTGCGTTGGACGAC 61.048 66.667 4.46 0.00 46.05 4.34
332 333 3.411351 CCCTTGCGTTGGACGACG 61.411 66.667 7.70 7.70 46.05 5.12
333 334 3.411351 CCTTGCGTTGGACGACGG 61.411 66.667 13.40 0.00 46.05 4.79
334 335 2.660552 CTTGCGTTGGACGACGGT 60.661 61.111 13.40 0.00 46.05 4.83
335 336 2.938823 CTTGCGTTGGACGACGGTG 61.939 63.158 13.40 0.00 46.05 4.94
336 337 4.953868 TGCGTTGGACGACGGTGG 62.954 66.667 13.40 0.00 46.05 4.61
387 388 4.029809 GTGGTCGGGGTTGGGGAG 62.030 72.222 0.00 0.00 0.00 4.30
410 411 4.499116 CTCGGGGGAGGGGGACAT 62.499 72.222 0.00 0.00 0.00 3.06
411 412 4.492303 TCGGGGGAGGGGGACATC 62.492 72.222 0.00 0.00 41.37 3.06
418 419 1.841556 GAGGGGGACATCGGGCATA 60.842 63.158 0.00 0.00 0.00 3.14
452 453 2.857186 ACCCCATTTGAATTGCCAAC 57.143 45.000 0.00 0.00 0.00 3.77
486 487 5.551760 CAACATTTGGAGGTACAGATGAC 57.448 43.478 0.00 0.00 36.69 3.06
487 488 5.248640 CAACATTTGGAGGTACAGATGACT 58.751 41.667 0.00 0.00 36.69 3.41
488 489 5.091261 ACATTTGGAGGTACAGATGACTC 57.909 43.478 0.00 0.00 36.69 3.36
489 490 4.780021 ACATTTGGAGGTACAGATGACTCT 59.220 41.667 0.00 0.00 36.69 3.24
490 491 5.958380 ACATTTGGAGGTACAGATGACTCTA 59.042 40.000 0.00 0.00 36.69 2.43
491 492 6.613271 ACATTTGGAGGTACAGATGACTCTAT 59.387 38.462 0.00 0.00 36.69 1.98
492 493 6.716934 TTTGGAGGTACAGATGACTCTATC 57.283 41.667 0.00 0.00 0.00 2.08
493 494 4.730966 TGGAGGTACAGATGACTCTATCC 58.269 47.826 0.00 0.00 0.00 2.59
494 495 4.417183 TGGAGGTACAGATGACTCTATCCT 59.583 45.833 0.00 0.00 31.85 3.24
495 496 4.764823 GGAGGTACAGATGACTCTATCCTG 59.235 50.000 0.00 0.00 30.41 3.86
496 497 5.381757 GAGGTACAGATGACTCTATCCTGT 58.618 45.833 0.00 0.00 30.41 4.00
498 499 6.198639 AGGTACAGATGACTCTATCCTGTTT 58.801 40.000 0.00 0.00 0.00 2.83
499 500 7.355101 AGGTACAGATGACTCTATCCTGTTTA 58.645 38.462 0.00 0.00 0.00 2.01
500 501 7.285858 AGGTACAGATGACTCTATCCTGTTTAC 59.714 40.741 0.00 0.00 0.00 2.01
501 502 7.068348 GGTACAGATGACTCTATCCTGTTTACA 59.932 40.741 0.00 0.00 0.00 2.41
502 503 7.482169 ACAGATGACTCTATCCTGTTTACAA 57.518 36.000 0.00 0.00 0.00 2.41
503 504 7.551585 ACAGATGACTCTATCCTGTTTACAAG 58.448 38.462 0.00 0.00 0.00 3.16
504 505 7.397476 ACAGATGACTCTATCCTGTTTACAAGA 59.603 37.037 0.00 0.00 0.00 3.02
505 506 8.420222 CAGATGACTCTATCCTGTTTACAAGAT 58.580 37.037 0.19 0.19 32.31 2.40
506 507 8.420222 AGATGACTCTATCCTGTTTACAAGATG 58.580 37.037 4.60 0.00 30.37 2.90
507 508 7.718334 TGACTCTATCCTGTTTACAAGATGA 57.282 36.000 4.60 1.01 30.37 2.92
508 509 8.134202 TGACTCTATCCTGTTTACAAGATGAA 57.866 34.615 4.60 0.00 30.37 2.57
509 510 8.035394 TGACTCTATCCTGTTTACAAGATGAAC 58.965 37.037 4.60 0.00 30.37 3.18
511 512 7.181125 ACTCTATCCTGTTTACAAGATGAACCT 59.819 37.037 4.60 0.00 30.37 3.50
512 513 8.603898 TCTATCCTGTTTACAAGATGAACCTA 57.396 34.615 4.60 0.00 30.37 3.08
513 514 8.475639 TCTATCCTGTTTACAAGATGAACCTAC 58.524 37.037 4.60 0.00 30.37 3.18
514 515 5.801380 TCCTGTTTACAAGATGAACCTACC 58.199 41.667 0.00 0.00 0.00 3.18
515 516 5.546499 TCCTGTTTACAAGATGAACCTACCT 59.454 40.000 0.00 0.00 0.00 3.08
517 518 7.042335 CCTGTTTACAAGATGAACCTACCTAG 58.958 42.308 0.00 0.00 0.00 3.02
518 519 7.093465 CCTGTTTACAAGATGAACCTACCTAGA 60.093 40.741 0.00 0.00 0.00 2.43
519 520 7.837863 TGTTTACAAGATGAACCTACCTAGAG 58.162 38.462 0.00 0.00 0.00 2.43
520 521 7.093465 TGTTTACAAGATGAACCTACCTAGAGG 60.093 40.741 0.00 0.00 42.89 3.69
536 537 4.889995 CCTAGAGGTGATGTGTATGTCAGA 59.110 45.833 0.00 0.00 0.00 3.27
538 539 5.745312 AGAGGTGATGTGTATGTCAGAAA 57.255 39.130 0.00 0.00 0.00 2.52
539 540 5.482908 AGAGGTGATGTGTATGTCAGAAAC 58.517 41.667 0.00 0.00 0.00 2.78
541 542 5.240891 AGGTGATGTGTATGTCAGAAACAG 58.759 41.667 0.00 0.00 42.37 3.16
542 543 4.142816 GGTGATGTGTATGTCAGAAACAGC 60.143 45.833 0.00 0.00 42.37 4.40
543 544 4.692625 GTGATGTGTATGTCAGAAACAGCT 59.307 41.667 7.49 0.00 42.37 4.24
544 545 5.869344 GTGATGTGTATGTCAGAAACAGCTA 59.131 40.000 7.49 0.00 42.37 3.32
545 546 6.368791 GTGATGTGTATGTCAGAAACAGCTAA 59.631 38.462 7.49 0.00 42.37 3.09
546 547 6.591448 TGATGTGTATGTCAGAAACAGCTAAG 59.409 38.462 7.49 0.00 42.37 2.18
547 548 5.853936 TGTGTATGTCAGAAACAGCTAAGT 58.146 37.500 0.00 0.00 42.37 2.24
548 549 6.288294 TGTGTATGTCAGAAACAGCTAAGTT 58.712 36.000 0.00 0.00 42.37 2.66
552 553 5.929697 TGTCAGAAACAGCTAAGTTGATG 57.070 39.130 0.00 0.00 32.81 3.07
553 554 5.610398 TGTCAGAAACAGCTAAGTTGATGA 58.390 37.500 0.00 0.00 32.81 2.92
557 558 4.686554 AGAAACAGCTAAGTTGATGACGTC 59.313 41.667 9.11 9.11 0.00 4.34
558 559 3.944055 ACAGCTAAGTTGATGACGTCT 57.056 42.857 17.92 1.84 0.00 4.18
559 560 3.839293 ACAGCTAAGTTGATGACGTCTC 58.161 45.455 17.92 12.01 0.00 3.36
560 561 2.848887 CAGCTAAGTTGATGACGTCTCG 59.151 50.000 17.92 0.08 0.00 4.04
561 562 1.584308 GCTAAGTTGATGACGTCTCGC 59.416 52.381 17.92 6.53 0.00 5.03
571 572 4.853507 CGTCTCGCGTAGGTTTCA 57.146 55.556 5.77 0.00 35.54 2.69
573 574 0.706729 CGTCTCGCGTAGGTTTCAAC 59.293 55.000 5.77 0.00 35.54 3.18
575 576 2.334838 GTCTCGCGTAGGTTTCAACAT 58.665 47.619 5.77 0.00 0.00 2.71
576 577 3.504863 GTCTCGCGTAGGTTTCAACATA 58.495 45.455 5.77 0.00 0.00 2.29
577 578 4.110482 GTCTCGCGTAGGTTTCAACATAT 58.890 43.478 5.77 0.00 0.00 1.78
579 580 4.565166 TCTCGCGTAGGTTTCAACATATTG 59.435 41.667 5.77 0.00 37.14 1.90
580 581 3.619483 TCGCGTAGGTTTCAACATATTGG 59.381 43.478 5.77 0.00 36.39 3.16
581 582 3.691498 GCGTAGGTTTCAACATATTGGC 58.309 45.455 0.00 0.00 36.39 4.52
582 583 3.488553 GCGTAGGTTTCAACATATTGGCC 60.489 47.826 0.00 0.00 36.39 5.36
583 584 3.066203 CGTAGGTTTCAACATATTGGCCC 59.934 47.826 0.00 0.00 36.39 5.80
585 586 3.515562 AGGTTTCAACATATTGGCCCAA 58.484 40.909 0.00 0.00 36.39 4.12
586 587 3.906846 AGGTTTCAACATATTGGCCCAAA 59.093 39.130 0.00 0.00 36.39 3.28
588 589 4.635324 GGTTTCAACATATTGGCCCAAATG 59.365 41.667 0.00 8.50 36.39 2.32
590 591 4.734398 TCAACATATTGGCCCAAATGTC 57.266 40.909 18.34 0.00 36.39 3.06
591 592 4.092279 TCAACATATTGGCCCAAATGTCA 58.908 39.130 18.34 9.98 36.39 3.58
592 593 4.160065 TCAACATATTGGCCCAAATGTCAG 59.840 41.667 18.34 15.16 36.39 3.51
593 594 2.431782 ACATATTGGCCCAAATGTCAGC 59.568 45.455 14.58 0.00 0.00 4.26
594 595 1.484038 TATTGGCCCAAATGTCAGCC 58.516 50.000 0.00 0.00 45.96 4.85
595 596 0.252375 ATTGGCCCAAATGTCAGCCT 60.252 50.000 0.00 0.00 45.94 4.58
596 597 0.899717 TTGGCCCAAATGTCAGCCTC 60.900 55.000 0.00 0.00 45.94 4.70
597 598 2.054453 GGCCCAAATGTCAGCCTCC 61.054 63.158 0.00 0.00 42.34 4.30
598 599 2.409870 GCCCAAATGTCAGCCTCCG 61.410 63.158 0.00 0.00 0.00 4.63
599 600 1.750399 CCCAAATGTCAGCCTCCGG 60.750 63.158 0.00 0.00 0.00 5.14
600 601 1.002134 CCAAATGTCAGCCTCCGGT 60.002 57.895 0.00 0.00 0.00 5.28
601 602 1.308069 CCAAATGTCAGCCTCCGGTG 61.308 60.000 0.00 0.00 38.92 4.94
603 604 2.129555 AAATGTCAGCCTCCGGTGCT 62.130 55.000 14.23 14.23 40.41 4.40
611 612 2.281761 CTCCGGTGCTGGTTGCTT 60.282 61.111 0.00 0.00 43.37 3.91
612 613 2.281484 TCCGGTGCTGGTTGCTTC 60.281 61.111 0.00 0.00 43.37 3.86
615 616 2.620112 CGGTGCTGGTTGCTTCAGG 61.620 63.158 0.00 0.00 43.37 3.86
619 620 1.136891 GTGCTGGTTGCTTCAGGTTTT 59.863 47.619 0.00 0.00 43.37 2.43
620 621 1.136695 TGCTGGTTGCTTCAGGTTTTG 59.863 47.619 0.00 0.00 43.37 2.44
621 622 1.538849 GCTGGTTGCTTCAGGTTTTGG 60.539 52.381 0.00 0.00 38.95 3.28
622 623 1.756538 CTGGTTGCTTCAGGTTTTGGT 59.243 47.619 0.00 0.00 0.00 3.67
624 625 2.167487 TGGTTGCTTCAGGTTTTGGTTC 59.833 45.455 0.00 0.00 0.00 3.62
625 626 2.167487 GGTTGCTTCAGGTTTTGGTTCA 59.833 45.455 0.00 0.00 0.00 3.18
627 628 3.011566 TGCTTCAGGTTTTGGTTCAGA 57.988 42.857 0.00 0.00 0.00 3.27
628 629 3.565307 TGCTTCAGGTTTTGGTTCAGAT 58.435 40.909 0.00 0.00 0.00 2.90
629 630 3.569701 TGCTTCAGGTTTTGGTTCAGATC 59.430 43.478 0.00 0.00 0.00 2.75
630 631 3.569701 GCTTCAGGTTTTGGTTCAGATCA 59.430 43.478 0.00 0.00 0.00 2.92
631 632 4.219288 GCTTCAGGTTTTGGTTCAGATCAT 59.781 41.667 0.00 0.00 0.00 2.45
632 633 5.620879 GCTTCAGGTTTTGGTTCAGATCATC 60.621 44.000 0.00 0.00 0.00 2.92
633 634 4.984295 TCAGGTTTTGGTTCAGATCATCA 58.016 39.130 0.00 0.00 0.00 3.07
635 636 6.720309 TCAGGTTTTGGTTCAGATCATCATA 58.280 36.000 0.00 0.00 0.00 2.15
637 638 7.283807 TCAGGTTTTGGTTCAGATCATCATATG 59.716 37.037 0.00 0.00 0.00 1.78
638 639 6.040166 AGGTTTTGGTTCAGATCATCATATGC 59.960 38.462 0.00 0.00 0.00 3.14
639 640 6.040166 GGTTTTGGTTCAGATCATCATATGCT 59.960 38.462 0.00 0.00 0.00 3.79
640 641 6.628919 TTTGGTTCAGATCATCATATGCTG 57.371 37.500 0.00 0.00 0.00 4.41
641 642 5.556006 TGGTTCAGATCATCATATGCTGA 57.444 39.130 11.44 11.44 38.53 4.26
642 643 5.932455 TGGTTCAGATCATCATATGCTGAA 58.068 37.500 12.92 14.05 41.67 3.02
643 644 6.540083 TGGTTCAGATCATCATATGCTGAAT 58.460 36.000 19.25 8.28 44.44 2.57
644 645 6.653740 TGGTTCAGATCATCATATGCTGAATC 59.346 38.462 19.25 19.03 44.44 2.52
646 647 7.148390 GGTTCAGATCATCATATGCTGAATCTG 60.148 40.741 24.58 24.58 44.03 2.90
647 648 7.005709 TCAGATCATCATATGCTGAATCTGT 57.994 36.000 26.58 11.44 43.57 3.41
648 649 8.130671 TCAGATCATCATATGCTGAATCTGTA 57.869 34.615 26.58 18.94 43.57 2.74
650 651 8.035984 CAGATCATCATATGCTGAATCTGTACT 58.964 37.037 23.51 7.39 40.88 2.73
651 652 8.595421 AGATCATCATATGCTGAATCTGTACTT 58.405 33.333 12.92 0.00 37.44 2.24
652 653 8.774890 ATCATCATATGCTGAATCTGTACTTC 57.225 34.615 12.92 0.00 37.44 3.01
654 655 8.427276 TCATCATATGCTGAATCTGTACTTCTT 58.573 33.333 6.78 0.00 37.44 2.52
681 682 4.989279 AACAAGATACATGCACATTCCC 57.011 40.909 0.00 0.00 0.00 3.97
685 686 5.824624 ACAAGATACATGCACATTCCCTTAG 59.175 40.000 0.00 0.00 0.00 2.18
686 687 4.392940 AGATACATGCACATTCCCTTAGC 58.607 43.478 0.00 0.00 0.00 3.09
687 688 2.512692 ACATGCACATTCCCTTAGCA 57.487 45.000 0.00 0.00 39.79 3.49
688 689 2.094675 ACATGCACATTCCCTTAGCAC 58.905 47.619 0.00 0.00 38.12 4.40
689 690 2.291153 ACATGCACATTCCCTTAGCACT 60.291 45.455 0.00 0.00 38.12 4.40
690 691 1.825090 TGCACATTCCCTTAGCACTG 58.175 50.000 0.00 0.00 0.00 3.66
691 692 1.073763 TGCACATTCCCTTAGCACTGT 59.926 47.619 0.00 0.00 0.00 3.55
692 693 2.162681 GCACATTCCCTTAGCACTGTT 58.837 47.619 0.00 0.00 0.00 3.16
693 694 2.558359 GCACATTCCCTTAGCACTGTTT 59.442 45.455 0.00 0.00 0.00 2.83
695 696 4.074970 CACATTCCCTTAGCACTGTTTCT 58.925 43.478 0.00 0.00 0.00 2.52
696 697 4.520492 CACATTCCCTTAGCACTGTTTCTT 59.480 41.667 0.00 0.00 0.00 2.52
698 699 5.241728 ACATTCCCTTAGCACTGTTTCTTTC 59.758 40.000 0.00 0.00 0.00 2.62
700 701 5.048846 TCCCTTAGCACTGTTTCTTTCTT 57.951 39.130 0.00 0.00 0.00 2.52
701 702 5.445964 TCCCTTAGCACTGTTTCTTTCTTT 58.554 37.500 0.00 0.00 0.00 2.52
702 703 5.531287 TCCCTTAGCACTGTTTCTTTCTTTC 59.469 40.000 0.00 0.00 0.00 2.62
705 706 7.416777 CCCTTAGCACTGTTTCTTTCTTTCTTT 60.417 37.037 0.00 0.00 0.00 2.52
706 707 7.645735 CCTTAGCACTGTTTCTTTCTTTCTTTC 59.354 37.037 0.00 0.00 0.00 2.62
707 708 6.765915 AGCACTGTTTCTTTCTTTCTTTCT 57.234 33.333 0.00 0.00 0.00 2.52
708 709 7.163001 AGCACTGTTTCTTTCTTTCTTTCTT 57.837 32.000 0.00 0.00 0.00 2.52
710 711 8.090831 AGCACTGTTTCTTTCTTTCTTTCTTTT 58.909 29.630 0.00 0.00 0.00 2.27
729 730 4.497473 TTTTTGGTATGCTTCGGTGAAG 57.503 40.909 2.22 2.22 42.03 3.02
737 738 1.576421 CTTCGGTGAAGCTGTTGGC 59.424 57.895 0.00 0.00 42.19 4.52
738 739 1.153066 TTCGGTGAAGCTGTTGGCA 60.153 52.632 0.00 0.00 44.79 4.92
739 740 1.444119 TTCGGTGAAGCTGTTGGCAC 61.444 55.000 0.00 0.00 44.79 5.01
740 741 2.639286 GGTGAAGCTGTTGGCACG 59.361 61.111 0.00 0.00 44.79 5.34
742 743 1.279840 GTGAAGCTGTTGGCACGTC 59.720 57.895 0.00 0.00 44.79 4.34
743 744 1.891919 TGAAGCTGTTGGCACGTCC 60.892 57.895 0.00 0.00 44.79 4.79
744 745 1.891919 GAAGCTGTTGGCACGTCCA 60.892 57.895 3.02 3.02 44.85 4.02
751 752 4.454948 TGGCACGTCCAGAACAAG 57.545 55.556 3.02 0.00 40.72 3.16
752 753 1.826709 TGGCACGTCCAGAACAAGA 59.173 52.632 3.02 0.00 40.72 3.02
753 754 0.396435 TGGCACGTCCAGAACAAGAT 59.604 50.000 3.02 0.00 40.72 2.40
754 755 1.621317 TGGCACGTCCAGAACAAGATA 59.379 47.619 3.02 0.00 40.72 1.98
755 756 2.000447 GGCACGTCCAGAACAAGATAC 59.000 52.381 0.00 0.00 34.01 2.24
756 757 2.611971 GGCACGTCCAGAACAAGATACA 60.612 50.000 0.00 0.00 34.01 2.29
759 760 3.062639 CACGTCCAGAACAAGATACATGC 59.937 47.826 0.00 0.00 0.00 4.06
764 809 4.637091 TCCAGAACAAGATACATGCACATG 59.363 41.667 9.06 9.06 44.15 3.21
765 810 4.637091 CCAGAACAAGATACATGCACATGA 59.363 41.667 17.19 1.93 41.20 3.07
815 1004 4.427312 GTTGGCAGGATTTCAGCAAATAG 58.573 43.478 0.00 0.00 31.94 1.73
831 1027 6.374565 GCAAATAGCACATCTCTCTTCATT 57.625 37.500 0.00 0.00 44.79 2.57
832 1028 6.428799 GCAAATAGCACATCTCTCTTCATTC 58.571 40.000 0.00 0.00 44.79 2.67
833 1029 6.037940 GCAAATAGCACATCTCTCTTCATTCA 59.962 38.462 0.00 0.00 44.79 2.57
834 1030 7.631822 CAAATAGCACATCTCTCTTCATTCAG 58.368 38.462 0.00 0.00 0.00 3.02
835 1031 4.822685 AGCACATCTCTCTTCATTCAGT 57.177 40.909 0.00 0.00 0.00 3.41
843 1039 7.172875 ACATCTCTCTTCATTCAGTTTCAGTTG 59.827 37.037 0.00 0.00 0.00 3.16
876 1072 3.091545 TCTTGGATGAAATGGAGTTGCC 58.908 45.455 0.00 0.00 37.10 4.52
877 1073 1.851304 TGGATGAAATGGAGTTGCCC 58.149 50.000 0.00 0.00 34.97 5.36
1010 1209 0.895100 AGTGCAACAATGGCGATGGT 60.895 50.000 0.00 0.00 41.43 3.55
1039 1238 1.134788 CGATTACCTGTCACCTCCACC 60.135 57.143 0.00 0.00 0.00 4.61
1059 1258 4.775253 CACCTTTTCCTCTTCCTCTCTAGT 59.225 45.833 0.00 0.00 0.00 2.57
1060 1259 5.952947 CACCTTTTCCTCTTCCTCTCTAGTA 59.047 44.000 0.00 0.00 0.00 1.82
1061 1260 6.096282 CACCTTTTCCTCTTCCTCTCTAGTAG 59.904 46.154 0.00 0.00 0.00 2.57
1062 1261 5.068591 CCTTTTCCTCTTCCTCTCTAGTAGC 59.931 48.000 0.00 0.00 0.00 3.58
1063 1262 4.864483 TTCCTCTTCCTCTCTAGTAGCA 57.136 45.455 0.00 0.00 0.00 3.49
1064 1263 5.396057 TTCCTCTTCCTCTCTAGTAGCAT 57.604 43.478 0.00 0.00 0.00 3.79
1065 1264 4.980573 TCCTCTTCCTCTCTAGTAGCATC 58.019 47.826 0.00 0.00 0.00 3.91
1066 1265 3.751175 CCTCTTCCTCTCTAGTAGCATCG 59.249 52.174 0.00 0.00 0.00 3.84
1067 1266 4.385825 CTCTTCCTCTCTAGTAGCATCGT 58.614 47.826 0.00 0.00 0.00 3.73
1077 1276 1.113253 GTAGCATCGTCATCGTCGTG 58.887 55.000 0.00 0.00 38.33 4.35
1124 1333 3.636764 AGAGTCCCAAATCCAAACAACAC 59.363 43.478 0.00 0.00 0.00 3.32
1129 1338 2.468831 CAAATCCAAACAACACCACCG 58.531 47.619 0.00 0.00 0.00 4.94
1493 1722 1.530183 GCTCCTTCATGGGCATCCC 60.530 63.158 0.00 0.00 45.71 3.85
1879 2108 2.624364 TCTTCAGGTACGCAACACTGTA 59.376 45.455 0.00 0.00 31.81 2.74
1888 3029 0.370273 GCAACACTGTATCGCCTTCG 59.630 55.000 0.00 0.00 0.00 3.79
1935 3114 9.290483 GCAACTTTCTGTTAGCCTATATTTTTC 57.710 33.333 0.00 0.00 37.07 2.29
1944 3123 9.042008 TGTTAGCCTATATTTTTCTTTAGAGCG 57.958 33.333 0.00 0.00 0.00 5.03
2007 3198 1.862602 GCTGGTACGCACCCAAAAGG 61.863 60.000 1.39 0.00 45.11 3.11
2049 3330 2.434884 CAGTAGTGCTGGTGCCCG 60.435 66.667 0.00 0.00 41.42 6.13
2050 3331 4.394712 AGTAGTGCTGGTGCCCGC 62.395 66.667 0.00 0.00 38.71 6.13
2321 3605 2.876879 CGCACGCGTCTTGGTTCAA 61.877 57.895 9.86 0.00 34.35 2.69
2598 3905 2.991190 CCGCGAGTTGTAGCTTTTTCTA 59.009 45.455 8.23 0.00 0.00 2.10
2706 4033 0.318275 TCGCCGATGCAACAAAAACC 60.318 50.000 0.00 0.00 37.32 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.109597 GTCCTTTCAAGCACCGCATG 60.110 55.000 0.00 0.00 0.00 4.06
33 34 1.244019 GGTCCTTTCAAGCACCGCAT 61.244 55.000 0.00 0.00 0.00 4.73
34 35 1.896660 GGTCCTTTCAAGCACCGCA 60.897 57.895 0.00 0.00 0.00 5.69
35 36 2.626780 GGGTCCTTTCAAGCACCGC 61.627 63.158 0.00 0.00 0.00 5.68
36 37 1.971695 GGGGTCCTTTCAAGCACCG 60.972 63.158 0.00 0.00 0.00 4.94
37 38 1.971695 CGGGGTCCTTTCAAGCACC 60.972 63.158 0.00 0.00 0.00 5.01
38 39 0.536460 TTCGGGGTCCTTTCAAGCAC 60.536 55.000 0.00 0.00 0.00 4.40
39 40 0.250727 CTTCGGGGTCCTTTCAAGCA 60.251 55.000 0.00 0.00 0.00 3.91
40 41 1.587043 GCTTCGGGGTCCTTTCAAGC 61.587 60.000 0.00 0.00 0.00 4.01
41 42 1.298859 CGCTTCGGGGTCCTTTCAAG 61.299 60.000 0.00 0.00 0.00 3.02
42 43 1.302192 CGCTTCGGGGTCCTTTCAA 60.302 57.895 0.00 0.00 0.00 2.69
43 44 2.345991 CGCTTCGGGGTCCTTTCA 59.654 61.111 0.00 0.00 0.00 2.69
44 45 2.436115 CCGCTTCGGGGTCCTTTC 60.436 66.667 0.00 0.00 44.15 2.62
60 61 2.178235 GGTTAATGCCTCGGCGTCC 61.178 63.158 6.85 0.00 45.51 4.79
61 62 1.152383 GAGGTTAATGCCTCGGCGTC 61.152 60.000 6.85 0.00 44.64 5.19
62 63 1.153429 GAGGTTAATGCCTCGGCGT 60.153 57.895 6.85 0.00 44.64 5.68
63 64 3.719214 GAGGTTAATGCCTCGGCG 58.281 61.111 0.00 0.00 44.64 6.46
68 69 0.622665 AGCTGCAGAGGTTAATGCCT 59.377 50.000 20.43 0.00 41.85 4.75
69 70 1.133790 CAAGCTGCAGAGGTTAATGCC 59.866 52.381 20.43 0.00 41.85 4.40
70 71 1.133790 CCAAGCTGCAGAGGTTAATGC 59.866 52.381 20.43 0.00 37.85 3.56
71 72 2.421424 GTCCAAGCTGCAGAGGTTAATG 59.579 50.000 20.43 4.49 37.85 1.90
72 73 2.716217 GTCCAAGCTGCAGAGGTTAAT 58.284 47.619 20.43 0.00 37.85 1.40
73 74 1.608025 CGTCCAAGCTGCAGAGGTTAA 60.608 52.381 20.43 0.00 37.85 2.01
74 75 0.037326 CGTCCAAGCTGCAGAGGTTA 60.037 55.000 20.43 0.00 37.85 2.85
75 76 1.302033 CGTCCAAGCTGCAGAGGTT 60.302 57.895 20.43 4.05 40.66 3.50
76 77 2.345244 CGTCCAAGCTGCAGAGGT 59.655 61.111 20.43 0.00 0.00 3.85
77 78 2.435586 CCGTCCAAGCTGCAGAGG 60.436 66.667 20.43 15.68 0.00 3.69
78 79 3.123620 GCCGTCCAAGCTGCAGAG 61.124 66.667 20.43 6.06 0.00 3.35
79 80 3.939939 TGCCGTCCAAGCTGCAGA 61.940 61.111 20.43 0.00 0.00 4.26
80 81 3.429141 CTGCCGTCCAAGCTGCAG 61.429 66.667 10.11 10.11 44.43 4.41
86 87 4.722700 CACCCCCTGCCGTCCAAG 62.723 72.222 0.00 0.00 0.00 3.61
111 112 4.840005 CTTCCGGGCTCCTTCGGC 62.840 72.222 0.00 0.00 45.31 5.54
112 113 4.162690 CCTTCCGGGCTCCTTCGG 62.163 72.222 0.00 0.00 46.89 4.30
113 114 4.162690 CCCTTCCGGGCTCCTTCG 62.163 72.222 0.00 0.00 45.33 3.79
122 123 4.715523 TTCAAGCGCCCCTTCCGG 62.716 66.667 2.29 0.00 0.00 5.14
123 124 2.876368 ATCTTCAAGCGCCCCTTCCG 62.876 60.000 2.29 0.00 0.00 4.30
124 125 0.681243 AATCTTCAAGCGCCCCTTCC 60.681 55.000 2.29 0.00 0.00 3.46
125 126 0.453390 CAATCTTCAAGCGCCCCTTC 59.547 55.000 2.29 0.00 0.00 3.46
126 127 1.598701 GCAATCTTCAAGCGCCCCTT 61.599 55.000 2.29 0.00 0.00 3.95
127 128 2.048603 GCAATCTTCAAGCGCCCCT 61.049 57.895 2.29 0.00 0.00 4.79
128 129 2.491621 GCAATCTTCAAGCGCCCC 59.508 61.111 2.29 0.00 0.00 5.80
129 130 2.491621 GGCAATCTTCAAGCGCCC 59.508 61.111 2.29 0.00 36.73 6.13
130 131 2.491621 GGGCAATCTTCAAGCGCC 59.508 61.111 2.29 4.22 42.21 6.53
131 132 2.100991 CGGGCAATCTTCAAGCGC 59.899 61.111 0.00 0.00 37.79 5.92
132 133 1.717937 CTCGGGCAATCTTCAAGCG 59.282 57.895 0.00 0.00 0.00 4.68
133 134 1.431036 GCTCGGGCAATCTTCAAGC 59.569 57.895 0.00 0.00 38.54 4.01
134 135 0.677731 TGGCTCGGGCAATCTTCAAG 60.678 55.000 10.74 0.00 40.87 3.02
135 136 0.677731 CTGGCTCGGGCAATCTTCAA 60.678 55.000 10.74 0.00 37.73 2.69
136 137 1.078214 CTGGCTCGGGCAATCTTCA 60.078 57.895 10.74 0.00 37.73 3.02
137 138 2.476320 GCTGGCTCGGGCAATCTTC 61.476 63.158 10.74 0.00 37.73 2.87
138 139 2.439156 GCTGGCTCGGGCAATCTT 60.439 61.111 10.74 0.00 37.73 2.40
139 140 3.694058 CTGCTGGCTCGGGCAATCT 62.694 63.158 10.74 0.00 37.73 2.40
140 141 3.207669 CTGCTGGCTCGGGCAATC 61.208 66.667 10.74 0.00 37.73 2.67
141 142 3.984193 GACTGCTGGCTCGGGCAAT 62.984 63.158 10.74 0.00 37.73 3.56
142 143 4.704833 GACTGCTGGCTCGGGCAA 62.705 66.667 10.74 0.00 37.73 4.52
144 145 4.704833 TTGACTGCTGGCTCGGGC 62.705 66.667 0.00 0.00 37.82 6.13
145 146 2.435586 CTTGACTGCTGGCTCGGG 60.436 66.667 0.00 0.00 0.00 5.14
146 147 2.435586 CCTTGACTGCTGGCTCGG 60.436 66.667 0.00 0.00 0.00 4.63
147 148 3.123620 GCCTTGACTGCTGGCTCG 61.124 66.667 0.00 0.00 43.05 5.03
148 149 3.123620 CGCCTTGACTGCTGGCTC 61.124 66.667 0.00 0.00 44.09 4.70
149 150 3.630013 TCGCCTTGACTGCTGGCT 61.630 61.111 0.00 0.00 44.09 4.75
150 151 3.426568 GTCGCCTTGACTGCTGGC 61.427 66.667 0.00 0.00 44.58 4.85
152 153 3.114616 CGGTCGCCTTGACTGCTG 61.115 66.667 0.00 0.00 46.48 4.41
169 170 4.840005 GTCTGCTACCGCCAGCCC 62.840 72.222 4.29 0.00 41.04 5.19
170 171 4.840005 GGTCTGCTACCGCCAGCC 62.840 72.222 4.29 0.00 41.04 4.85
197 198 4.692625 CACTTCTATCCTCGGCCATTAATG 59.307 45.833 8.58 8.58 0.00 1.90
198 199 4.804261 GCACTTCTATCCTCGGCCATTAAT 60.804 45.833 2.24 0.00 0.00 1.40
199 200 3.494398 GCACTTCTATCCTCGGCCATTAA 60.494 47.826 2.24 0.00 0.00 1.40
200 201 2.037251 GCACTTCTATCCTCGGCCATTA 59.963 50.000 2.24 0.00 0.00 1.90
201 202 1.202698 GCACTTCTATCCTCGGCCATT 60.203 52.381 2.24 0.00 0.00 3.16
202 203 0.394565 GCACTTCTATCCTCGGCCAT 59.605 55.000 2.24 0.00 0.00 4.40
203 204 1.686325 GGCACTTCTATCCTCGGCCA 61.686 60.000 2.24 0.00 39.66 5.36
204 205 1.069935 GGCACTTCTATCCTCGGCC 59.930 63.158 0.00 0.00 0.00 6.13
205 206 0.032815 GAGGCACTTCTATCCTCGGC 59.967 60.000 0.00 0.00 41.55 5.54
206 207 0.676736 GGAGGCACTTCTATCCTCGG 59.323 60.000 0.00 0.00 45.57 4.63
207 208 0.676736 GGGAGGCACTTCTATCCTCG 59.323 60.000 0.00 0.00 45.57 4.63
208 209 2.095604 AGGGAGGCACTTCTATCCTC 57.904 55.000 0.00 0.00 41.55 3.71
209 210 3.933239 ATAGGGAGGCACTTCTATCCT 57.067 47.619 0.00 0.00 41.55 3.24
210 211 4.027437 CCTATAGGGAGGCACTTCTATCC 58.973 52.174 11.33 0.00 41.55 2.59
211 212 4.464597 CACCTATAGGGAGGCACTTCTATC 59.535 50.000 22.91 0.00 40.65 2.08
212 213 4.421131 CACCTATAGGGAGGCACTTCTAT 58.579 47.826 22.91 0.00 40.65 1.98
213 214 3.438078 CCACCTATAGGGAGGCACTTCTA 60.438 52.174 22.91 0.00 40.65 2.10
214 215 2.683768 CACCTATAGGGAGGCACTTCT 58.316 52.381 22.91 0.00 40.65 2.85
215 216 1.694696 CCACCTATAGGGAGGCACTTC 59.305 57.143 22.91 0.00 40.65 3.01
216 217 1.807814 CCACCTATAGGGAGGCACTT 58.192 55.000 22.91 0.00 40.65 3.16
217 218 3.560226 CCACCTATAGGGAGGCACT 57.440 57.895 22.91 0.00 40.65 4.40
221 222 2.407340 AAGAGCCACCTATAGGGAGG 57.593 55.000 22.91 22.45 46.74 4.30
222 223 3.181450 CCAAAAGAGCCACCTATAGGGAG 60.181 52.174 22.91 13.99 40.27 4.30
223 224 2.777692 CCAAAAGAGCCACCTATAGGGA 59.222 50.000 22.91 0.00 40.27 4.20
224 225 2.158608 CCCAAAAGAGCCACCTATAGGG 60.159 54.545 22.91 11.41 40.27 3.53
225 226 2.158608 CCCCAAAAGAGCCACCTATAGG 60.159 54.545 17.73 17.73 42.17 2.57
226 227 2.509964 ACCCCAAAAGAGCCACCTATAG 59.490 50.000 0.00 0.00 0.00 1.31
227 228 2.568979 ACCCCAAAAGAGCCACCTATA 58.431 47.619 0.00 0.00 0.00 1.31
228 229 1.382914 ACCCCAAAAGAGCCACCTAT 58.617 50.000 0.00 0.00 0.00 2.57
229 230 1.154430 AACCCCAAAAGAGCCACCTA 58.846 50.000 0.00 0.00 0.00 3.08
230 231 0.264657 AAACCCCAAAAGAGCCACCT 59.735 50.000 0.00 0.00 0.00 4.00
231 232 0.392706 CAAACCCCAAAAGAGCCACC 59.607 55.000 0.00 0.00 0.00 4.61
232 233 0.249868 GCAAACCCCAAAAGAGCCAC 60.250 55.000 0.00 0.00 0.00 5.01
233 234 1.743321 CGCAAACCCCAAAAGAGCCA 61.743 55.000 0.00 0.00 0.00 4.75
234 235 1.006220 CGCAAACCCCAAAAGAGCC 60.006 57.895 0.00 0.00 0.00 4.70
235 236 0.318699 GACGCAAACCCCAAAAGAGC 60.319 55.000 0.00 0.00 0.00 4.09
236 237 1.001378 CTGACGCAAACCCCAAAAGAG 60.001 52.381 0.00 0.00 0.00 2.85
237 238 1.028905 CTGACGCAAACCCCAAAAGA 58.971 50.000 0.00 0.00 0.00 2.52
238 239 1.028905 TCTGACGCAAACCCCAAAAG 58.971 50.000 0.00 0.00 0.00 2.27
239 240 1.611491 GATCTGACGCAAACCCCAAAA 59.389 47.619 0.00 0.00 0.00 2.44
240 241 1.243902 GATCTGACGCAAACCCCAAA 58.756 50.000 0.00 0.00 0.00 3.28
241 242 0.608035 GGATCTGACGCAAACCCCAA 60.608 55.000 0.00 0.00 0.00 4.12
242 243 1.002624 GGATCTGACGCAAACCCCA 60.003 57.895 0.00 0.00 0.00 4.96
243 244 1.002624 TGGATCTGACGCAAACCCC 60.003 57.895 0.00 0.00 0.00 4.95
244 245 1.648467 GCTGGATCTGACGCAAACCC 61.648 60.000 0.00 0.00 0.00 4.11
245 246 1.796796 GCTGGATCTGACGCAAACC 59.203 57.895 0.00 0.00 0.00 3.27
246 247 1.421485 CGCTGGATCTGACGCAAAC 59.579 57.895 0.00 0.00 0.00 2.93
247 248 1.741401 CCGCTGGATCTGACGCAAA 60.741 57.895 0.00 0.00 0.00 3.68
248 249 2.125552 CCGCTGGATCTGACGCAA 60.126 61.111 0.00 0.00 0.00 4.85
249 250 4.147449 CCCGCTGGATCTGACGCA 62.147 66.667 0.00 0.00 0.00 5.24
250 251 4.148825 ACCCGCTGGATCTGACGC 62.149 66.667 0.00 0.00 34.81 5.19
251 252 2.202797 CACCCGCTGGATCTGACG 60.203 66.667 0.00 0.00 34.81 4.35
252 253 0.460987 CTTCACCCGCTGGATCTGAC 60.461 60.000 0.00 0.00 34.81 3.51
253 254 1.617018 CCTTCACCCGCTGGATCTGA 61.617 60.000 0.00 0.00 34.81 3.27
254 255 1.153289 CCTTCACCCGCTGGATCTG 60.153 63.158 0.00 0.00 34.81 2.90
255 256 2.370445 CCCTTCACCCGCTGGATCT 61.370 63.158 0.00 0.00 34.81 2.75
256 257 2.190578 CCCTTCACCCGCTGGATC 59.809 66.667 0.00 0.00 34.81 3.36
257 258 3.411517 CCCCTTCACCCGCTGGAT 61.412 66.667 0.00 0.00 34.81 3.41
258 259 4.974438 ACCCCTTCACCCGCTGGA 62.974 66.667 0.00 0.00 34.81 3.86
259 260 4.722700 CACCCCTTCACCCGCTGG 62.723 72.222 0.00 0.00 37.80 4.85
260 261 4.722700 CCACCCCTTCACCCGCTG 62.723 72.222 0.00 0.00 0.00 5.18
261 262 4.974438 TCCACCCCTTCACCCGCT 62.974 66.667 0.00 0.00 0.00 5.52
262 263 4.410400 CTCCACCCCTTCACCCGC 62.410 72.222 0.00 0.00 0.00 6.13
263 264 4.410400 GCTCCACCCCTTCACCCG 62.410 72.222 0.00 0.00 0.00 5.28
264 265 2.936032 AGCTCCACCCCTTCACCC 60.936 66.667 0.00 0.00 0.00 4.61
265 266 2.352805 CAGCTCCACCCCTTCACC 59.647 66.667 0.00 0.00 0.00 4.02
266 267 2.352805 CCAGCTCCACCCCTTCAC 59.647 66.667 0.00 0.00 0.00 3.18
267 268 2.935481 CCCAGCTCCACCCCTTCA 60.935 66.667 0.00 0.00 0.00 3.02
268 269 3.732849 CCCCAGCTCCACCCCTTC 61.733 72.222 0.00 0.00 0.00 3.46
279 280 1.077858 CCTCTCTTTCAGCCCCAGC 60.078 63.158 0.00 0.00 40.32 4.85
280 281 1.077858 GCCTCTCTTTCAGCCCCAG 60.078 63.158 0.00 0.00 0.00 4.45
281 282 1.845627 CTGCCTCTCTTTCAGCCCCA 61.846 60.000 0.00 0.00 0.00 4.96
282 283 1.077858 CTGCCTCTCTTTCAGCCCC 60.078 63.158 0.00 0.00 0.00 5.80
283 284 1.748500 GCTGCCTCTCTTTCAGCCC 60.749 63.158 2.32 0.00 45.34 5.19
284 285 3.902318 GCTGCCTCTCTTTCAGCC 58.098 61.111 2.32 0.00 45.34 4.85
285 286 1.375268 ACGCTGCCTCTCTTTCAGC 60.375 57.895 3.59 3.59 46.98 4.26
286 287 1.018226 CCACGCTGCCTCTCTTTCAG 61.018 60.000 0.00 0.00 0.00 3.02
287 288 1.004560 CCACGCTGCCTCTCTTTCA 60.005 57.895 0.00 0.00 0.00 2.69
288 289 1.743252 CCCACGCTGCCTCTCTTTC 60.743 63.158 0.00 0.00 0.00 2.62
289 290 2.348998 CCCACGCTGCCTCTCTTT 59.651 61.111 0.00 0.00 0.00 2.52
290 291 4.400961 GCCCACGCTGCCTCTCTT 62.401 66.667 0.00 0.00 0.00 2.85
304 305 2.440980 GCAAGGGGACATCAGCCC 60.441 66.667 0.00 0.00 45.25 5.19
305 306 2.825836 CGCAAGGGGACATCAGCC 60.826 66.667 0.00 0.00 0.00 4.85
306 307 1.675641 AACGCAAGGGGACATCAGC 60.676 57.895 0.00 0.00 46.39 4.26
307 308 1.308069 CCAACGCAAGGGGACATCAG 61.308 60.000 0.00 0.00 46.39 2.90
308 309 1.303236 CCAACGCAAGGGGACATCA 60.303 57.895 0.00 0.00 46.39 3.07
309 310 1.002624 TCCAACGCAAGGGGACATC 60.003 57.895 0.00 0.00 46.39 3.06
310 311 3.166434 TCCAACGCAAGGGGACAT 58.834 55.556 0.00 0.00 46.39 3.06
313 314 3.235481 TCGTCCAACGCAAGGGGA 61.235 61.111 0.00 0.00 42.21 4.81
314 315 3.047877 GTCGTCCAACGCAAGGGG 61.048 66.667 0.00 0.00 42.21 4.79
315 316 3.411351 CGTCGTCCAACGCAAGGG 61.411 66.667 0.00 0.00 42.21 3.95
316 317 3.411351 CCGTCGTCCAACGCAAGG 61.411 66.667 0.00 0.00 42.21 3.61
317 318 2.660552 ACCGTCGTCCAACGCAAG 60.661 61.111 0.00 0.00 42.21 4.01
318 319 2.962786 CACCGTCGTCCAACGCAA 60.963 61.111 0.00 0.00 42.21 4.85
319 320 4.953868 CCACCGTCGTCCAACGCA 62.954 66.667 0.00 0.00 42.21 5.24
370 371 4.029809 CTCCCCAACCCCGACCAC 62.030 72.222 0.00 0.00 0.00 4.16
393 394 4.499116 ATGTCCCCCTCCCCCGAG 62.499 72.222 0.00 0.00 35.72 4.63
394 395 4.492303 GATGTCCCCCTCCCCCGA 62.492 72.222 0.00 0.00 0.00 5.14
400 401 1.201429 ATATGCCCGATGTCCCCCTC 61.201 60.000 0.00 0.00 0.00 4.30
401 402 0.118346 TATATGCCCGATGTCCCCCT 59.882 55.000 0.00 0.00 0.00 4.79
402 403 0.252197 GTATATGCCCGATGTCCCCC 59.748 60.000 0.00 0.00 0.00 5.40
403 404 1.276622 AGTATATGCCCGATGTCCCC 58.723 55.000 0.00 0.00 0.00 4.81
404 405 3.074412 CAAAGTATATGCCCGATGTCCC 58.926 50.000 0.00 0.00 0.00 4.46
405 406 3.740115 ACAAAGTATATGCCCGATGTCC 58.260 45.455 0.00 0.00 0.00 4.02
406 407 4.213482 GGAACAAAGTATATGCCCGATGTC 59.787 45.833 0.00 0.00 0.00 3.06
407 408 4.134563 GGAACAAAGTATATGCCCGATGT 58.865 43.478 0.00 0.00 0.00 3.06
408 409 4.133820 TGGAACAAAGTATATGCCCGATG 58.866 43.478 0.00 0.00 31.92 3.84
409 410 4.431416 TGGAACAAAGTATATGCCCGAT 57.569 40.909 0.00 0.00 31.92 4.18
410 411 3.916359 TGGAACAAAGTATATGCCCGA 57.084 42.857 0.00 0.00 31.92 5.14
452 453 1.661617 CAAATGTTGGGCATTGCATCG 59.338 47.619 11.39 0.00 46.29 3.84
480 481 7.962995 TCTTGTAAACAGGATAGAGTCATCT 57.037 36.000 0.00 0.00 39.75 2.90
485 486 7.181125 AGGTTCATCTTGTAAACAGGATAGAGT 59.819 37.037 7.33 0.00 40.15 3.24
486 487 7.560368 AGGTTCATCTTGTAAACAGGATAGAG 58.440 38.462 7.33 0.00 40.15 2.43
487 488 7.496346 AGGTTCATCTTGTAAACAGGATAGA 57.504 36.000 7.33 5.65 40.15 1.98
488 489 7.711339 GGTAGGTTCATCTTGTAAACAGGATAG 59.289 40.741 7.33 3.75 40.15 2.08
489 490 7.402071 AGGTAGGTTCATCTTGTAAACAGGATA 59.598 37.037 7.33 0.00 40.15 2.59
490 491 6.215636 AGGTAGGTTCATCTTGTAAACAGGAT 59.784 38.462 2.15 2.15 42.43 3.24
491 492 5.546499 AGGTAGGTTCATCTTGTAAACAGGA 59.454 40.000 0.00 0.00 36.39 3.86
492 493 5.805728 AGGTAGGTTCATCTTGTAAACAGG 58.194 41.667 0.00 0.00 0.00 4.00
493 494 7.837863 TCTAGGTAGGTTCATCTTGTAAACAG 58.162 38.462 0.00 0.00 0.00 3.16
494 495 7.093465 CCTCTAGGTAGGTTCATCTTGTAAACA 60.093 40.741 0.00 0.00 31.46 2.83
495 496 7.266400 CCTCTAGGTAGGTTCATCTTGTAAAC 58.734 42.308 0.00 0.00 31.46 2.01
496 497 7.419711 CCTCTAGGTAGGTTCATCTTGTAAA 57.580 40.000 0.00 0.00 31.46 2.01
513 514 4.889995 TCTGACATACACATCACCTCTAGG 59.110 45.833 0.00 0.00 42.17 3.02
514 515 6.456795 TTCTGACATACACATCACCTCTAG 57.543 41.667 0.00 0.00 0.00 2.43
515 516 6.210584 TGTTTCTGACATACACATCACCTCTA 59.789 38.462 0.00 0.00 32.00 2.43
517 518 5.237815 TGTTTCTGACATACACATCACCTC 58.762 41.667 0.00 0.00 32.00 3.85
518 519 5.227569 TGTTTCTGACATACACATCACCT 57.772 39.130 0.00 0.00 32.00 4.00
519 520 4.142816 GCTGTTTCTGACATACACATCACC 60.143 45.833 0.00 0.00 37.69 4.02
520 521 4.692625 AGCTGTTTCTGACATACACATCAC 59.307 41.667 0.00 0.00 37.69 3.06
522 523 6.591834 ACTTAGCTGTTTCTGACATACACATC 59.408 38.462 0.00 0.00 37.69 3.06
523 524 6.467677 ACTTAGCTGTTTCTGACATACACAT 58.532 36.000 0.00 0.00 37.69 3.21
524 525 5.853936 ACTTAGCTGTTTCTGACATACACA 58.146 37.500 0.00 0.00 37.69 3.72
525 526 6.423905 TCAACTTAGCTGTTTCTGACATACAC 59.576 38.462 0.00 0.00 37.69 2.90
526 527 6.521162 TCAACTTAGCTGTTTCTGACATACA 58.479 36.000 0.00 0.00 37.69 2.29
527 528 7.331934 TCATCAACTTAGCTGTTTCTGACATAC 59.668 37.037 0.00 0.00 37.69 2.39
529 530 6.148480 GTCATCAACTTAGCTGTTTCTGACAT 59.852 38.462 16.26 0.00 37.96 3.06
530 531 5.466728 GTCATCAACTTAGCTGTTTCTGACA 59.533 40.000 16.26 0.00 37.96 3.58
533 534 4.449068 ACGTCATCAACTTAGCTGTTTCTG 59.551 41.667 0.00 0.00 0.00 3.02
536 537 4.632153 AGACGTCATCAACTTAGCTGTTT 58.368 39.130 19.50 0.00 0.00 2.83
538 539 3.670895 CGAGACGTCATCAACTTAGCTGT 60.671 47.826 19.50 0.00 0.00 4.40
539 540 2.848887 CGAGACGTCATCAACTTAGCTG 59.151 50.000 19.50 0.00 0.00 4.24
541 542 1.584308 GCGAGACGTCATCAACTTAGC 59.416 52.381 19.50 3.13 0.00 3.09
542 543 1.840741 CGCGAGACGTCATCAACTTAG 59.159 52.381 19.50 0.00 36.87 2.18
543 544 1.891178 CGCGAGACGTCATCAACTTA 58.109 50.000 19.50 0.00 36.87 2.24
544 545 2.725644 CGCGAGACGTCATCAACTT 58.274 52.632 19.50 0.00 36.87 2.66
545 546 4.459973 CGCGAGACGTCATCAACT 57.540 55.556 19.50 0.00 36.87 3.16
557 558 4.260212 CCAATATGTTGAAACCTACGCGAG 60.260 45.833 15.93 5.77 37.53 5.03
558 559 3.619483 CCAATATGTTGAAACCTACGCGA 59.381 43.478 15.93 0.00 37.53 5.87
559 560 3.787476 GCCAATATGTTGAAACCTACGCG 60.787 47.826 3.53 3.53 37.53 6.01
560 561 3.488553 GGCCAATATGTTGAAACCTACGC 60.489 47.826 3.41 0.00 37.53 4.42
561 562 3.066203 GGGCCAATATGTTGAAACCTACG 59.934 47.826 4.39 0.00 37.53 3.51
562 563 4.020543 TGGGCCAATATGTTGAAACCTAC 58.979 43.478 2.13 0.00 37.53 3.18
566 567 5.244755 ACATTTGGGCCAATATGTTGAAAC 58.755 37.500 27.03 0.00 37.53 2.78
567 568 5.012458 TGACATTTGGGCCAATATGTTGAAA 59.988 36.000 30.16 20.33 37.53 2.69
568 569 4.529769 TGACATTTGGGCCAATATGTTGAA 59.470 37.500 30.16 21.83 37.53 2.69
570 571 4.435425 CTGACATTTGGGCCAATATGTTG 58.565 43.478 30.16 24.59 31.10 3.33
571 572 3.118665 GCTGACATTTGGGCCAATATGTT 60.119 43.478 30.16 20.93 31.10 2.71
573 574 2.224113 GGCTGACATTTGGGCCAATATG 60.224 50.000 26.13 26.13 43.59 1.78
575 576 1.006998 AGGCTGACATTTGGGCCAATA 59.993 47.619 21.65 11.54 46.23 1.90
576 577 0.252375 AGGCTGACATTTGGGCCAAT 60.252 50.000 21.65 4.91 46.23 3.16
577 578 0.899717 GAGGCTGACATTTGGGCCAA 60.900 55.000 16.66 16.66 46.23 4.52
579 580 2.054453 GGAGGCTGACATTTGGGCC 61.054 63.158 0.00 0.00 44.38 5.80
580 581 2.409870 CGGAGGCTGACATTTGGGC 61.410 63.158 0.00 0.00 0.00 5.36
581 582 1.750399 CCGGAGGCTGACATTTGGG 60.750 63.158 0.00 0.00 46.14 4.12
582 583 3.909662 CCGGAGGCTGACATTTGG 58.090 61.111 0.00 0.00 46.14 3.28
601 602 1.538849 CCAAAACCTGAAGCAACCAGC 60.539 52.381 0.00 0.00 46.19 4.85
603 604 1.859302 ACCAAAACCTGAAGCAACCA 58.141 45.000 0.00 0.00 0.00 3.67
604 605 2.167487 TGAACCAAAACCTGAAGCAACC 59.833 45.455 0.00 0.00 0.00 3.77
605 606 3.130340 TCTGAACCAAAACCTGAAGCAAC 59.870 43.478 0.00 0.00 0.00 4.17
609 610 5.474532 TGATGATCTGAACCAAAACCTGAAG 59.525 40.000 0.00 0.00 0.00 3.02
611 612 4.984295 TGATGATCTGAACCAAAACCTGA 58.016 39.130 0.00 0.00 0.00 3.86
612 613 5.909621 ATGATGATCTGAACCAAAACCTG 57.090 39.130 0.00 0.00 0.00 4.00
615 616 6.916387 CAGCATATGATGATCTGAACCAAAAC 59.084 38.462 15.95 0.00 32.25 2.43
619 620 5.556006 TCAGCATATGATGATCTGAACCA 57.444 39.130 19.39 0.00 35.30 3.67
620 621 6.879993 AGATTCAGCATATGATGATCTGAACC 59.120 38.462 23.34 13.84 40.03 3.62
621 622 7.388224 ACAGATTCAGCATATGATGATCTGAAC 59.612 37.037 36.80 24.47 42.13 3.18
622 623 7.450903 ACAGATTCAGCATATGATGATCTGAA 58.549 34.615 36.80 29.29 42.13 3.02
624 625 8.035984 AGTACAGATTCAGCATATGATGATCTG 58.964 37.037 33.17 33.17 43.40 2.90
625 626 8.136563 AGTACAGATTCAGCATATGATGATCT 57.863 34.615 23.34 21.66 40.42 2.75
627 628 8.595421 AGAAGTACAGATTCAGCATATGATGAT 58.405 33.333 23.34 13.69 40.42 2.45
628 629 7.960262 AGAAGTACAGATTCAGCATATGATGA 58.040 34.615 19.39 19.39 38.86 2.92
629 630 8.604640 AAGAAGTACAGATTCAGCATATGATG 57.395 34.615 14.87 14.87 37.89 3.07
659 660 5.754782 AGGGAATGTGCATGTATCTTGTTA 58.245 37.500 0.00 0.00 0.00 2.41
661 662 4.240881 AGGGAATGTGCATGTATCTTGT 57.759 40.909 0.00 0.00 0.00 3.16
662 663 5.278169 GCTAAGGGAATGTGCATGTATCTTG 60.278 44.000 0.00 0.00 0.00 3.02
664 665 4.141413 TGCTAAGGGAATGTGCATGTATCT 60.141 41.667 0.00 0.00 0.00 1.98
666 667 3.885297 GTGCTAAGGGAATGTGCATGTAT 59.115 43.478 0.00 0.00 36.04 2.29
667 668 3.054434 AGTGCTAAGGGAATGTGCATGTA 60.054 43.478 0.00 0.00 36.04 2.29
668 669 2.094675 GTGCTAAGGGAATGTGCATGT 58.905 47.619 0.00 0.00 36.04 3.21
669 670 2.098607 CAGTGCTAAGGGAATGTGCATG 59.901 50.000 0.00 0.00 36.04 4.06
670 671 2.291153 ACAGTGCTAAGGGAATGTGCAT 60.291 45.455 0.00 0.00 40.30 3.96
675 676 5.474876 AGAAAGAAACAGTGCTAAGGGAATG 59.525 40.000 0.00 0.00 35.12 2.67
676 677 5.635120 AGAAAGAAACAGTGCTAAGGGAAT 58.365 37.500 0.00 0.00 0.00 3.01
678 679 4.706842 AGAAAGAAACAGTGCTAAGGGA 57.293 40.909 0.00 0.00 0.00 4.20
679 680 5.532779 AGAAAGAAAGAAACAGTGCTAAGGG 59.467 40.000 0.00 0.00 0.00 3.95
681 682 8.401709 AGAAAGAAAGAAAGAAACAGTGCTAAG 58.598 33.333 0.00 0.00 0.00 2.18
685 686 7.818493 AAAGAAAGAAAGAAAGAAACAGTGC 57.182 32.000 0.00 0.00 0.00 4.40
708 709 4.497473 CTTCACCGAAGCATACCAAAAA 57.503 40.909 0.00 0.00 32.78 1.94
719 720 1.165907 TGCCAACAGCTTCACCGAAG 61.166 55.000 0.00 0.00 44.23 3.79
720 721 1.153066 TGCCAACAGCTTCACCGAA 60.153 52.632 0.00 0.00 44.23 4.30
721 722 1.891919 GTGCCAACAGCTTCACCGA 60.892 57.895 0.00 0.00 44.23 4.69
722 723 2.639286 GTGCCAACAGCTTCACCG 59.361 61.111 0.00 0.00 44.23 4.94
723 724 2.117941 GACGTGCCAACAGCTTCACC 62.118 60.000 0.00 0.00 44.23 4.02
724 725 1.279840 GACGTGCCAACAGCTTCAC 59.720 57.895 0.00 0.00 44.23 3.18
725 726 1.891919 GGACGTGCCAACAGCTTCA 60.892 57.895 0.00 0.00 44.23 3.02
726 727 1.891919 TGGACGTGCCAACAGCTTC 60.892 57.895 4.04 0.00 45.87 3.86
727 728 2.191908 TGGACGTGCCAACAGCTT 59.808 55.556 4.04 0.00 45.87 3.74
735 736 2.000447 GTATCTTGTTCTGGACGTGCC 59.000 52.381 4.04 0.43 37.10 5.01
736 737 2.683968 TGTATCTTGTTCTGGACGTGC 58.316 47.619 0.00 0.00 0.00 5.34
737 738 3.062639 GCATGTATCTTGTTCTGGACGTG 59.937 47.826 0.00 0.00 0.00 4.49
738 739 3.262420 GCATGTATCTTGTTCTGGACGT 58.738 45.455 0.00 0.00 0.00 4.34
739 740 3.062639 GTGCATGTATCTTGTTCTGGACG 59.937 47.826 0.00 0.00 0.00 4.79
740 741 4.002982 TGTGCATGTATCTTGTTCTGGAC 58.997 43.478 0.00 0.00 0.00 4.02
742 743 4.637091 TCATGTGCATGTATCTTGTTCTGG 59.363 41.667 11.38 0.00 39.72 3.86
743 744 5.729732 GCTCATGTGCATGTATCTTGTTCTG 60.730 44.000 14.66 0.00 39.72 3.02
744 745 4.334759 GCTCATGTGCATGTATCTTGTTCT 59.665 41.667 14.66 0.00 39.72 3.01
745 746 4.095334 TGCTCATGTGCATGTATCTTGTTC 59.905 41.667 18.04 0.00 39.72 3.18
747 748 3.613030 TGCTCATGTGCATGTATCTTGT 58.387 40.909 18.04 0.00 39.72 3.16
776 821 6.038825 CCTGCCAACGTACAAATTCCATATAA 59.961 38.462 0.00 0.00 0.00 0.98
815 1004 5.410746 TGAAACTGAATGAAGAGAGATGTGC 59.589 40.000 0.00 0.00 0.00 4.57
827 1023 3.804036 ACGACCAACTGAAACTGAATGA 58.196 40.909 0.00 0.00 0.00 2.57
828 1024 3.559655 TGACGACCAACTGAAACTGAATG 59.440 43.478 0.00 0.00 0.00 2.67
829 1025 3.560068 GTGACGACCAACTGAAACTGAAT 59.440 43.478 0.00 0.00 0.00 2.57
830 1026 2.933906 GTGACGACCAACTGAAACTGAA 59.066 45.455 0.00 0.00 0.00 3.02
831 1027 2.093921 TGTGACGACCAACTGAAACTGA 60.094 45.455 0.00 0.00 0.00 3.41
832 1028 2.030457 GTGTGACGACCAACTGAAACTG 59.970 50.000 0.00 0.00 0.00 3.16
833 1029 2.277084 GTGTGACGACCAACTGAAACT 58.723 47.619 0.00 0.00 0.00 2.66
834 1030 2.004017 TGTGTGACGACCAACTGAAAC 58.996 47.619 0.00 0.00 0.00 2.78
835 1031 2.388310 TGTGTGACGACCAACTGAAA 57.612 45.000 0.00 0.00 0.00 2.69
843 1039 2.002586 CATCCAAGATGTGTGACGACC 58.997 52.381 0.00 0.00 0.00 4.79
876 1072 2.820479 TTACCATTTCGCGCGGGG 60.820 61.111 31.69 26.15 0.00 5.73
877 1073 1.913451 TTGTTACCATTTCGCGCGGG 61.913 55.000 31.69 24.82 0.00 6.13
971 1170 1.503542 CACTCACGGATGGCTTTGC 59.496 57.895 0.00 0.00 0.00 3.68
981 1180 0.813610 TTGTTGCACTCCACTCACGG 60.814 55.000 0.00 0.00 0.00 4.94
1010 1209 0.968901 ACAGGTAATCGGGAGCGTCA 60.969 55.000 0.00 0.00 0.00 4.35
1020 1219 2.188817 AGGTGGAGGTGACAGGTAATC 58.811 52.381 0.00 0.00 0.00 1.75
1039 1238 5.654650 TGCTACTAGAGAGGAAGAGGAAAAG 59.345 44.000 0.00 0.00 0.00 2.27
1059 1258 0.028902 CCACGACGATGACGATGCTA 59.971 55.000 0.00 0.00 42.66 3.49
1060 1259 1.226688 CCACGACGATGACGATGCT 60.227 57.895 0.00 0.00 42.66 3.79
1061 1260 1.472276 GACCACGACGATGACGATGC 61.472 60.000 0.00 0.00 42.66 3.91
1062 1261 1.194280 CGACCACGACGATGACGATG 61.194 60.000 0.00 0.00 41.06 3.84
1063 1262 1.062047 CGACCACGACGATGACGAT 59.938 57.895 0.00 0.00 41.06 3.73
1064 1263 2.477396 CGACCACGACGATGACGA 59.523 61.111 0.00 0.00 41.06 4.20
1065 1264 3.238241 GCGACCACGACGATGACG 61.238 66.667 0.00 5.41 42.66 4.35
1066 1265 2.879462 GGCGACCACGACGATGAC 60.879 66.667 0.00 0.00 42.66 3.06
1098 1307 3.652869 TGTTTGGATTTGGGACTCTCTCT 59.347 43.478 0.00 0.00 0.00 3.10
1458 1687 2.626840 GAGCAGTGGATGAAGAAGGTC 58.373 52.381 0.00 0.00 0.00 3.85
1530 1759 4.712425 ACGTACGAGTGGTGCCGC 62.712 66.667 24.41 0.00 0.00 6.53
1611 1840 2.270205 CTCCTGAGCACCGGCATT 59.730 61.111 0.00 0.00 44.61 3.56
1818 2047 3.103911 GTCGTCGTTGCCGTCCTG 61.104 66.667 0.00 0.00 35.01 3.86
1935 3114 7.572502 AAATGAAAATGCTTTCGCTCTAAAG 57.427 32.000 0.00 0.00 43.40 1.85
1944 3123 7.585210 GCAGACTTTGAAAATGAAAATGCTTTC 59.415 33.333 0.00 0.00 41.25 2.62
2007 3198 9.037737 TGCGTACATATGATCTAAACTTAAACC 57.962 33.333 10.38 0.00 0.00 3.27
2049 3330 2.435938 TGTCGATTGGCTTCGGGC 60.436 61.111 9.83 5.28 39.56 6.13
2050 3331 2.106683 GGTGTCGATTGGCTTCGGG 61.107 63.158 9.83 0.00 39.56 5.14
2051 3332 0.953471 TTGGTGTCGATTGGCTTCGG 60.953 55.000 9.83 0.00 39.56 4.30
2052 3333 0.165944 GTTGGTGTCGATTGGCTTCG 59.834 55.000 4.38 4.38 40.46 3.79
2321 3605 0.392998 GGACATGTCACTGGCGGATT 60.393 55.000 26.47 0.00 0.00 3.01
2598 3905 2.825532 AGAAAATGCTACAACCGGCAAT 59.174 40.909 0.00 0.00 41.90 3.56
2706 4033 4.760047 AGCTACAACCAGCGGCCG 62.760 66.667 24.05 24.05 46.52 6.13
2754 4081 1.896220 CCTGTGGAAGCTGCAAACTA 58.104 50.000 1.02 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.