Multiple sequence alignment - TraesCS3B01G048300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G048300 chr3B 100.000 3476 0 0 1 3476 24513143 24516618 0.000000e+00 6420.0
1 TraesCS3B01G048300 chr3B 91.132 530 38 6 2699 3227 605648387 605647866 0.000000e+00 710.0
2 TraesCS3B01G048300 chr3B 89.077 531 49 5 2685 3214 255701227 255701749 0.000000e+00 651.0
3 TraesCS3B01G048300 chr3B 92.500 40 2 1 684 723 715144714 715144752 4.850000e-04 56.5
4 TraesCS3B01G048300 chr3D 91.913 1892 86 26 746 2623 17110142 17111980 0.000000e+00 2584.0
5 TraesCS3B01G048300 chr3D 88.577 499 34 10 2817 3314 17112866 17113342 5.000000e-163 584.0
6 TraesCS3B01G048300 chr3D 90.278 72 3 3 2533 2600 17343465 17343536 1.330000e-14 91.6
7 TraesCS3B01G048300 chr3A 91.327 957 60 11 1668 2623 19780256 19779322 0.000000e+00 1286.0
8 TraesCS3B01G048300 chr3A 92.474 784 33 9 862 1638 19781020 19780256 0.000000e+00 1098.0
9 TraesCS3B01G048300 chr3A 88.791 339 20 4 2788 3126 19778394 19778074 1.940000e-107 399.0
10 TraesCS3B01G048300 chr3A 100.000 35 0 0 684 718 20174220 20174186 8.050000e-07 65.8
11 TraesCS3B01G048300 chr2B 96.486 683 21 2 1 680 296026467 296027149 0.000000e+00 1125.0
12 TraesCS3B01G048300 chr2B 96.188 682 22 2 1 680 316103392 316104071 0.000000e+00 1112.0
13 TraesCS3B01G048300 chr2B 94.918 669 31 3 1 668 579684892 579684226 0.000000e+00 1044.0
14 TraesCS3B01G048300 chr2B 94.910 668 29 1 1 668 220466664 220467326 0.000000e+00 1040.0
15 TraesCS3B01G048300 chr2B 91.509 530 36 6 2699 3227 612670079 612670600 0.000000e+00 721.0
16 TraesCS3B01G048300 chr2B 92.530 415 31 0 2043 2457 118305400 118305814 2.310000e-166 595.0
17 TraesCS3B01G048300 chr2B 100.000 32 0 0 683 714 550999180 550999211 3.750000e-05 60.2
18 TraesCS3B01G048300 chr2B 97.143 35 0 1 684 718 575371331 575371298 1.350000e-04 58.4
19 TraesCS3B01G048300 chr6B 96.481 682 20 3 1 680 67945545 67946224 0.000000e+00 1123.0
20 TraesCS3B01G048300 chr6B 96.188 682 23 3 1 680 544723639 544724319 0.000000e+00 1112.0
21 TraesCS3B01G048300 chr6B 91.159 328 29 0 2130 2457 674317373 674317700 2.460000e-121 446.0
22 TraesCS3B01G048300 chr1B 96.613 679 20 2 1 677 295768875 295769552 0.000000e+00 1123.0
23 TraesCS3B01G048300 chr1B 96.053 684 21 5 3 680 17338020 17337337 0.000000e+00 1109.0
24 TraesCS3B01G048300 chrUn 96.204 685 21 4 1 680 317006276 317006960 0.000000e+00 1116.0
25 TraesCS3B01G048300 chrUn 92.530 415 30 1 2043 2457 75655503 75655916 8.310000e-166 593.0
26 TraesCS3B01G048300 chrUn 92.530 415 30 1 2043 2457 186655103 186654690 8.310000e-166 593.0
27 TraesCS3B01G048300 chrUn 92.530 415 30 1 2043 2457 378943657 378943244 8.310000e-166 593.0
28 TraesCS3B01G048300 chrUn 91.566 415 34 1 2043 2457 75682360 75682773 3.890000e-159 571.0
29 TraesCS3B01G048300 chrUn 92.558 215 13 2 2784 2996 121445975 121445762 4.360000e-79 305.0
30 TraesCS3B01G048300 chr5B 96.041 682 25 2 1 680 150043157 150043838 0.000000e+00 1109.0
31 TraesCS3B01G048300 chr1A 96.041 682 24 3 1 680 536287775 536287095 0.000000e+00 1107.0
32 TraesCS3B01G048300 chr1A 91.507 471 32 5 2758 3227 109426760 109426297 2.920000e-180 641.0
33 TraesCS3B01G048300 chr1A 94.595 37 2 0 683 719 580182406 580182442 1.350000e-04 58.4
34 TraesCS3B01G048300 chr4A 94.109 662 34 3 1 661 196608969 196608312 0.000000e+00 1002.0
35 TraesCS3B01G048300 chr4A 91.321 530 37 6 2699 3227 702431978 702431457 0.000000e+00 715.0
36 TraesCS3B01G048300 chr4A 91.650 503 34 4 2726 3227 76382447 76381952 0.000000e+00 689.0
37 TraesCS3B01G048300 chr4A 92.308 39 2 1 681 718 595824859 595824821 2.000000e-03 54.7
38 TraesCS3B01G048300 chr4B 91.525 531 34 8 2699 3227 423394763 423394242 0.000000e+00 721.0
39 TraesCS3B01G048300 chr4B 92.558 215 13 2 2784 2996 667803603 667803816 4.360000e-79 305.0
40 TraesCS3B01G048300 chr7B 90.955 398 36 0 2060 2457 37374364 37373967 1.420000e-148 536.0
41 TraesCS3B01G048300 chr7B 100.000 30 0 0 2625 2654 577562832 577562803 4.850000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G048300 chr3B 24513143 24516618 3475 False 6420.000000 6420 100.000 1 3476 1 chr3B.!!$F1 3475
1 TraesCS3B01G048300 chr3B 605647866 605648387 521 True 710.000000 710 91.132 2699 3227 1 chr3B.!!$R1 528
2 TraesCS3B01G048300 chr3B 255701227 255701749 522 False 651.000000 651 89.077 2685 3214 1 chr3B.!!$F2 529
3 TraesCS3B01G048300 chr3D 17110142 17113342 3200 False 1584.000000 2584 90.245 746 3314 2 chr3D.!!$F2 2568
4 TraesCS3B01G048300 chr3A 19778074 19781020 2946 True 927.666667 1286 90.864 862 3126 3 chr3A.!!$R2 2264
5 TraesCS3B01G048300 chr2B 296026467 296027149 682 False 1125.000000 1125 96.486 1 680 1 chr2B.!!$F3 679
6 TraesCS3B01G048300 chr2B 316103392 316104071 679 False 1112.000000 1112 96.188 1 680 1 chr2B.!!$F4 679
7 TraesCS3B01G048300 chr2B 579684226 579684892 666 True 1044.000000 1044 94.918 1 668 1 chr2B.!!$R2 667
8 TraesCS3B01G048300 chr2B 220466664 220467326 662 False 1040.000000 1040 94.910 1 668 1 chr2B.!!$F2 667
9 TraesCS3B01G048300 chr2B 612670079 612670600 521 False 721.000000 721 91.509 2699 3227 1 chr2B.!!$F6 528
10 TraesCS3B01G048300 chr6B 67945545 67946224 679 False 1123.000000 1123 96.481 1 680 1 chr6B.!!$F1 679
11 TraesCS3B01G048300 chr6B 544723639 544724319 680 False 1112.000000 1112 96.188 1 680 1 chr6B.!!$F2 679
12 TraesCS3B01G048300 chr1B 295768875 295769552 677 False 1123.000000 1123 96.613 1 677 1 chr1B.!!$F1 676
13 TraesCS3B01G048300 chr1B 17337337 17338020 683 True 1109.000000 1109 96.053 3 680 1 chr1B.!!$R1 677
14 TraesCS3B01G048300 chrUn 317006276 317006960 684 False 1116.000000 1116 96.204 1 680 1 chrUn.!!$F3 679
15 TraesCS3B01G048300 chr5B 150043157 150043838 681 False 1109.000000 1109 96.041 1 680 1 chr5B.!!$F1 679
16 TraesCS3B01G048300 chr1A 536287095 536287775 680 True 1107.000000 1107 96.041 1 680 1 chr1A.!!$R2 679
17 TraesCS3B01G048300 chr4A 196608312 196608969 657 True 1002.000000 1002 94.109 1 661 1 chr4A.!!$R2 660
18 TraesCS3B01G048300 chr4A 702431457 702431978 521 True 715.000000 715 91.321 2699 3227 1 chr4A.!!$R4 528
19 TraesCS3B01G048300 chr4B 423394242 423394763 521 True 721.000000 721 91.525 2699 3227 1 chr4B.!!$R1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
856 879 0.031721 ACCGTCTCACGAACTTGGTC 59.968 55.0 0.00 0.0 46.05 4.02 F
2369 2402 0.096628 CTGTTCTACCTCGTCGGTCG 59.903 60.0 2.51 0.0 44.93 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2415 2448 0.033699 AGAATTGAGAAGCAGGGGCC 60.034 55.0 0.00 0.0 42.56 5.80 R
3395 4380 0.175073 GGTCAGCTCGGAACCGTAAT 59.825 55.0 12.93 0.0 40.74 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 8.682936 AACTAGATCCCATGTTGATATGTTTC 57.317 34.615 0.00 0.00 0.00 2.78
290 296 6.038714 TGCCATGATACATGCACGTAAAATTA 59.961 34.615 0.00 0.00 0.00 1.40
445 453 3.630312 AGTGTAAACATCGTGGCAACTTT 59.370 39.130 0.00 0.00 37.61 2.66
506 519 5.480205 GGGTCTAGTTTTGAAGATCTCGTT 58.520 41.667 0.00 0.00 0.00 3.85
507 520 6.350780 GGGGTCTAGTTTTGAAGATCTCGTTA 60.351 42.308 0.00 0.00 0.00 3.18
545 558 5.050634 GGTGAAAACGGATTTTTAGTTTGCC 60.051 40.000 0.00 0.00 38.17 4.52
668 682 1.922135 GACGATGTGCAAACGCCCAT 61.922 55.000 8.04 0.00 29.43 4.00
682 696 3.717899 CCATACGTGTGGGCGATG 58.282 61.111 22.66 4.36 35.55 3.84
683 697 2.534019 CCATACGTGTGGGCGATGC 61.534 63.158 22.66 0.00 35.55 3.91
684 698 1.813337 CATACGTGTGGGCGATGCA 60.813 57.895 4.09 0.00 35.59 3.96
685 699 1.813753 ATACGTGTGGGCGATGCAC 60.814 57.895 0.00 0.00 35.59 4.57
686 700 2.514510 ATACGTGTGGGCGATGCACA 62.515 55.000 0.00 0.00 40.85 4.57
691 705 4.617520 TGGGCGATGCACACGTGT 62.618 61.111 17.22 17.22 36.87 4.49
693 707 4.088762 GGCGATGCACACGTGTGG 62.089 66.667 40.73 28.20 45.72 4.17
694 708 4.088762 GCGATGCACACGTGTGGG 62.089 66.667 40.73 23.49 45.72 4.61
700 714 3.720531 CACACGTGTGGGCGTTAA 58.279 55.556 35.65 0.00 43.83 2.01
701 715 1.277440 CACACGTGTGGGCGTTAAC 59.723 57.895 35.65 0.00 43.83 2.01
702 716 1.153409 ACACGTGTGGGCGTTAACA 60.153 52.632 22.71 0.00 43.83 2.41
703 717 0.533308 ACACGTGTGGGCGTTAACAT 60.533 50.000 22.71 0.00 43.83 2.71
704 718 0.589223 CACGTGTGGGCGTTAACATT 59.411 50.000 7.58 0.00 43.83 2.71
705 719 1.002251 CACGTGTGGGCGTTAACATTT 60.002 47.619 7.58 0.00 43.83 2.32
706 720 1.264826 ACGTGTGGGCGTTAACATTTC 59.735 47.619 6.39 0.00 43.04 2.17
707 721 1.400500 CGTGTGGGCGTTAACATTTCC 60.400 52.381 6.39 1.91 0.00 3.13
708 722 0.875728 TGTGGGCGTTAACATTTCCG 59.124 50.000 6.39 0.00 0.00 4.30
709 723 0.876399 GTGGGCGTTAACATTTCCGT 59.124 50.000 6.39 0.00 0.00 4.69
710 724 1.267533 GTGGGCGTTAACATTTCCGTT 59.732 47.619 6.39 0.00 0.00 4.44
711 725 1.955080 TGGGCGTTAACATTTCCGTTT 59.045 42.857 6.39 0.00 0.00 3.60
712 726 3.058363 GTGGGCGTTAACATTTCCGTTTA 60.058 43.478 6.39 0.00 0.00 2.01
713 727 3.757493 TGGGCGTTAACATTTCCGTTTAT 59.243 39.130 6.39 0.00 0.00 1.40
714 728 4.142643 TGGGCGTTAACATTTCCGTTTATC 60.143 41.667 6.39 0.00 0.00 1.75
715 729 4.142643 GGGCGTTAACATTTCCGTTTATCA 60.143 41.667 6.39 0.00 0.00 2.15
716 730 5.449451 GGGCGTTAACATTTCCGTTTATCAT 60.449 40.000 6.39 0.00 0.00 2.45
717 731 6.031471 GGCGTTAACATTTCCGTTTATCATT 58.969 36.000 6.39 0.00 0.00 2.57
718 732 6.020995 GGCGTTAACATTTCCGTTTATCATTG 60.021 38.462 6.39 0.00 0.00 2.82
719 733 6.505732 GCGTTAACATTTCCGTTTATCATTGC 60.506 38.462 6.39 0.00 0.00 3.56
720 734 6.524933 CGTTAACATTTCCGTTTATCATTGCA 59.475 34.615 6.39 0.00 0.00 4.08
721 735 7.219917 CGTTAACATTTCCGTTTATCATTGCAT 59.780 33.333 6.39 0.00 0.00 3.96
722 736 6.890663 AACATTTCCGTTTATCATTGCATG 57.109 33.333 0.00 0.00 0.00 4.06
723 737 6.206395 ACATTTCCGTTTATCATTGCATGA 57.794 33.333 0.00 0.00 44.55 3.07
734 748 4.538746 TCATTGCATGATTTTCTTGGCA 57.461 36.364 0.00 0.00 33.59 4.92
735 749 5.092554 TCATTGCATGATTTTCTTGGCAT 57.907 34.783 0.00 0.00 33.59 4.40
736 750 5.492895 TCATTGCATGATTTTCTTGGCATT 58.507 33.333 0.00 0.00 33.59 3.56
737 751 5.941058 TCATTGCATGATTTTCTTGGCATTT 59.059 32.000 0.00 0.00 33.59 2.32
738 752 6.431543 TCATTGCATGATTTTCTTGGCATTTT 59.568 30.769 0.00 0.00 33.59 1.82
739 753 6.636562 TTGCATGATTTTCTTGGCATTTTT 57.363 29.167 0.00 0.00 0.00 1.94
740 754 6.003234 TGCATGATTTTCTTGGCATTTTTG 57.997 33.333 0.00 0.00 0.00 2.44
741 755 5.531659 TGCATGATTTTCTTGGCATTTTTGT 59.468 32.000 0.00 0.00 0.00 2.83
742 756 6.709397 TGCATGATTTTCTTGGCATTTTTGTA 59.291 30.769 0.00 0.00 0.00 2.41
743 757 7.095144 TGCATGATTTTCTTGGCATTTTTGTAG 60.095 33.333 0.00 0.00 0.00 2.74
744 758 7.095102 GCATGATTTTCTTGGCATTTTTGTAGT 60.095 33.333 0.00 0.00 0.00 2.73
745 759 9.421806 CATGATTTTCTTGGCATTTTTGTAGTA 57.578 29.630 0.00 0.00 0.00 1.82
746 760 9.995003 ATGATTTTCTTGGCATTTTTGTAGTAA 57.005 25.926 0.00 0.00 0.00 2.24
747 761 9.255304 TGATTTTCTTGGCATTTTTGTAGTAAC 57.745 29.630 0.00 0.00 0.00 2.50
748 762 9.255304 GATTTTCTTGGCATTTTTGTAGTAACA 57.745 29.630 0.00 0.00 0.00 2.41
749 763 8.641499 TTTTCTTGGCATTTTTGTAGTAACAG 57.359 30.769 0.00 0.00 36.83 3.16
750 764 6.952773 TCTTGGCATTTTTGTAGTAACAGT 57.047 33.333 0.00 0.00 36.83 3.55
775 789 1.746220 ACTCGAACGGATCTCAAGGAG 59.254 52.381 0.00 0.00 0.00 3.69
776 790 0.456221 TCGAACGGATCTCAAGGAGC 59.544 55.000 0.00 0.00 0.00 4.70
814 837 2.358737 GTGAACAGTCGGGCCTGG 60.359 66.667 12.87 0.00 36.75 4.45
815 838 3.636231 TGAACAGTCGGGCCTGGG 61.636 66.667 12.87 4.42 36.75 4.45
816 839 4.410400 GAACAGTCGGGCCTGGGG 62.410 72.222 12.87 4.03 36.75 4.96
827 850 3.579302 CCTGGGGCCTGAACACCA 61.579 66.667 0.84 0.00 0.00 4.17
828 851 2.034687 CTGGGGCCTGAACACCAG 59.965 66.667 8.82 8.82 43.87 4.00
829 852 2.449518 TGGGGCCTGAACACCAGA 60.450 61.111 0.84 0.00 45.78 3.86
830 853 2.352805 GGGGCCTGAACACCAGAG 59.647 66.667 0.84 0.00 45.78 3.35
831 854 2.360475 GGGCCTGAACACCAGAGC 60.360 66.667 0.84 0.00 45.78 4.09
832 855 2.753029 GGCCTGAACACCAGAGCT 59.247 61.111 0.00 0.00 45.78 4.09
851 874 1.300697 GGCAACCGTCTCACGAACT 60.301 57.895 0.00 0.00 46.05 3.01
856 879 0.031721 ACCGTCTCACGAACTTGGTC 59.968 55.000 0.00 0.00 46.05 4.02
978 1007 1.192146 CCCCCTCTTCTTCGTCCACA 61.192 60.000 0.00 0.00 0.00 4.17
993 1022 1.275291 TCCACACCAAGAACTCGATCC 59.725 52.381 0.00 0.00 0.00 3.36
994 1023 1.676014 CCACACCAAGAACTCGATCCC 60.676 57.143 0.00 0.00 0.00 3.85
995 1024 1.276421 CACACCAAGAACTCGATCCCT 59.724 52.381 0.00 0.00 0.00 4.20
996 1025 1.276421 ACACCAAGAACTCGATCCCTG 59.724 52.381 0.00 0.00 0.00 4.45
1018 1047 3.596066 ATGGAGCAACACGAGCGCT 62.596 57.895 11.27 11.27 39.12 5.92
1194 1223 2.016096 GCCAGGAAGCAGGATCTTGAC 61.016 57.143 9.36 0.10 0.00 3.18
1266 1296 2.348966 GCTCTGTTCTTGACGTTCTTGC 60.349 50.000 0.00 0.00 0.00 4.01
1304 1334 2.506438 GAACCTTCGCCGGAGTCG 60.506 66.667 5.05 0.00 0.00 4.18
1483 1513 0.096976 CATCTTGGCGCGAATTCGTT 59.903 50.000 27.24 2.06 42.22 3.85
1496 1526 3.417969 CGAATTCGTTAGAGTTCCGATCG 59.582 47.826 19.67 8.51 39.17 3.69
1559 1589 2.927856 TCAAGGAAGCAGGCCGGA 60.928 61.111 5.05 0.00 0.00 5.14
1676 1706 0.520404 GTACGCACGAGGACTTCTCA 59.480 55.000 0.00 0.00 42.55 3.27
1697 1727 0.663568 CGATGGCCGGTAAGATCGAC 60.664 60.000 14.00 0.00 40.06 4.20
1698 1728 0.387929 GATGGCCGGTAAGATCGACA 59.612 55.000 1.90 0.00 0.00 4.35
1699 1729 0.104304 ATGGCCGGTAAGATCGACAC 59.896 55.000 1.90 0.00 0.00 3.67
1749 1779 4.333649 TGCGTTCTTGATCTTGATGATTCC 59.666 41.667 0.00 0.00 35.14 3.01
1766 1796 4.220821 TGATTCCTCTGTACTCACTGAACC 59.779 45.833 0.00 0.00 32.87 3.62
1781 1811 3.827302 ACTGAACCGAGTAATCTGTCAGT 59.173 43.478 11.94 11.94 0.00 3.41
2055 2085 1.744522 GACAGGTTCCTCTCGTCTACC 59.255 57.143 0.00 0.00 0.00 3.18
2082 2112 2.185608 GGCTCCTCAGCTTCGGAC 59.814 66.667 0.00 0.00 46.03 4.79
2369 2402 0.096628 CTGTTCTACCTCGTCGGTCG 59.903 60.000 2.51 0.00 44.93 4.79
2371 2404 1.746615 TTCTACCTCGTCGGTCGGG 60.747 63.158 2.51 0.00 44.93 5.14
2415 2448 4.508662 GAGAGAACCAGGACAAGGTAATG 58.491 47.826 0.00 0.00 38.76 1.90
2417 2450 2.092323 GAACCAGGACAAGGTAATGGC 58.908 52.381 0.00 0.00 38.76 4.40
2422 2455 0.395724 GGACAAGGTAATGGCCCCTG 60.396 60.000 0.00 0.00 43.22 4.45
2437 2470 2.686118 GCCCCTGCTTCTCAATTCTCAT 60.686 50.000 0.00 0.00 33.53 2.90
2438 2471 2.950309 CCCCTGCTTCTCAATTCTCATG 59.050 50.000 0.00 0.00 0.00 3.07
2439 2472 2.358267 CCCTGCTTCTCAATTCTCATGC 59.642 50.000 0.00 0.00 0.00 4.06
2440 2473 3.014623 CCTGCTTCTCAATTCTCATGCA 58.985 45.455 0.00 0.00 0.00 3.96
2441 2474 3.442625 CCTGCTTCTCAATTCTCATGCAA 59.557 43.478 0.00 0.00 0.00 4.08
2442 2475 4.413087 CTGCTTCTCAATTCTCATGCAAC 58.587 43.478 0.00 0.00 0.00 4.17
2443 2476 4.077108 TGCTTCTCAATTCTCATGCAACT 58.923 39.130 0.00 0.00 0.00 3.16
2444 2477 4.521639 TGCTTCTCAATTCTCATGCAACTT 59.478 37.500 0.00 0.00 0.00 2.66
2445 2478 5.010314 TGCTTCTCAATTCTCATGCAACTTT 59.990 36.000 0.00 0.00 0.00 2.66
2446 2479 5.345202 GCTTCTCAATTCTCATGCAACTTTG 59.655 40.000 0.00 0.00 0.00 2.77
2447 2480 6.395426 TTCTCAATTCTCATGCAACTTTGT 57.605 33.333 0.00 0.00 0.00 2.83
2448 2481 6.005583 TCTCAATTCTCATGCAACTTTGTC 57.994 37.500 0.00 0.00 0.00 3.18
2449 2482 4.786507 TCAATTCTCATGCAACTTTGTCG 58.213 39.130 0.00 0.00 0.00 4.35
2450 2483 4.275689 TCAATTCTCATGCAACTTTGTCGT 59.724 37.500 0.00 0.00 0.00 4.34
2451 2484 3.607422 TTCTCATGCAACTTTGTCGTG 57.393 42.857 0.00 0.00 0.00 4.35
2452 2485 1.264020 TCTCATGCAACTTTGTCGTGC 59.736 47.619 0.00 0.00 0.00 5.34
2453 2486 1.002576 CTCATGCAACTTTGTCGTGCA 60.003 47.619 0.00 0.00 39.91 4.57
2454 2487 1.002576 TCATGCAACTTTGTCGTGCAG 60.003 47.619 3.77 0.00 38.95 4.41
2455 2488 0.311790 ATGCAACTTTGTCGTGCAGG 59.688 50.000 0.00 0.00 38.95 4.85
2458 2491 0.381801 CAACTTTGTCGTGCAGGCTT 59.618 50.000 0.35 0.00 0.00 4.35
2465 2498 1.273886 TGTCGTGCAGGCTTATGTGTA 59.726 47.619 0.35 0.00 0.00 2.90
2570 2610 3.369261 GGGATAGCTGCATAGTGGATCAG 60.369 52.174 1.02 0.00 0.00 2.90
2571 2611 3.513119 GGATAGCTGCATAGTGGATCAGA 59.487 47.826 1.02 0.00 0.00 3.27
2572 2612 4.381825 GGATAGCTGCATAGTGGATCAGAG 60.382 50.000 1.02 0.00 0.00 3.35
2573 2613 1.070445 AGCTGCATAGTGGATCAGAGC 59.930 52.381 1.02 0.00 0.00 4.09
2574 2614 1.202615 GCTGCATAGTGGATCAGAGCA 60.203 52.381 0.00 0.00 0.00 4.26
2575 2615 2.481854 CTGCATAGTGGATCAGAGCAC 58.518 52.381 0.00 0.00 0.00 4.40
2576 2616 1.832998 TGCATAGTGGATCAGAGCACA 59.167 47.619 0.00 0.00 0.00 4.57
2577 2617 2.436911 TGCATAGTGGATCAGAGCACAT 59.563 45.455 0.00 0.00 0.00 3.21
2601 2641 3.309296 TGGTGTTCCTCTTCTCTGAAGT 58.691 45.455 7.13 0.00 34.23 3.01
2614 2654 8.190326 TCTTCTCTGAAGTTTACATACCTTGA 57.810 34.615 7.13 0.00 0.00 3.02
2627 3172 1.632589 ACCTTGAAATCCCTTGGTGC 58.367 50.000 0.00 0.00 0.00 5.01
2652 3197 5.122239 TGTTTCTGTTCTTCAGTGACAGTTG 59.878 40.000 8.95 0.00 43.97 3.16
2653 3198 4.736126 TCTGTTCTTCAGTGACAGTTGA 57.264 40.909 8.95 0.00 43.97 3.18
2654 3199 5.282055 TCTGTTCTTCAGTGACAGTTGAT 57.718 39.130 8.95 0.00 43.97 2.57
2656 3201 4.129380 TGTTCTTCAGTGACAGTTGATGG 58.871 43.478 0.00 0.00 0.00 3.51
2659 3204 3.387699 TCTTCAGTGACAGTTGATGGTCA 59.612 43.478 0.00 0.00 41.44 4.02
2662 3207 3.580022 TCAGTGACAGTTGATGGTCAGAT 59.420 43.478 0.00 0.00 44.05 2.90
2664 3209 4.758674 CAGTGACAGTTGATGGTCAGATTT 59.241 41.667 0.00 0.00 44.05 2.17
2665 3210 5.240183 CAGTGACAGTTGATGGTCAGATTTT 59.760 40.000 0.00 0.00 44.05 1.82
2719 3264 5.189180 GGGATCTTTGAGTTGAAGCTGTAT 58.811 41.667 0.00 0.00 0.00 2.29
2754 3599 9.993454 TTTCTCCACATATTAAGATCAGAGATG 57.007 33.333 0.00 0.00 0.00 2.90
2765 3610 3.646637 AGATCAGAGATGATGTGCCATGA 59.353 43.478 0.00 0.00 0.00 3.07
2801 3646 5.939883 AGTTCAGCTGTATGCAGTCAATTTA 59.060 36.000 14.67 0.00 45.94 1.40
2845 3817 2.877097 ATGTGCCATGGTGACTTGTA 57.123 45.000 14.67 0.00 33.84 2.41
2847 3819 2.435422 TGTGCCATGGTGACTTGTATG 58.565 47.619 14.67 0.00 33.84 2.39
2850 3822 3.374058 GTGCCATGGTGACTTGTATGTAC 59.626 47.826 14.67 0.00 33.84 2.90
2955 3938 1.912043 CCCTTGAGACTCCAGATTGGT 59.088 52.381 5.13 0.00 39.03 3.67
3071 4054 4.434545 AGCTGTCTGGATGATTTAGCAT 57.565 40.909 0.00 0.00 34.03 3.79
3079 4062 7.675619 TGTCTGGATGATTTAGCATAGGATAGA 59.324 37.037 0.00 0.00 0.00 1.98
3083 4066 9.942526 TGGATGATTTAGCATAGGATAGATAGA 57.057 33.333 0.00 0.00 0.00 1.98
3135 4119 2.094026 TCTCGCTGAAGCTGAAGCATAA 60.094 45.455 18.17 5.08 45.16 1.90
3140 4124 2.686915 CTGAAGCTGAAGCATAAAGGGG 59.313 50.000 4.90 0.00 45.16 4.79
3186 4170 6.638873 CGACGAATTTCAGCTAGATCATAGTT 59.361 38.462 0.00 0.00 0.00 2.24
3190 4174 8.607459 CGAATTTCAGCTAGATCATAGTTTTGT 58.393 33.333 0.00 0.00 0.00 2.83
3241 4225 5.303971 AGTGGAATTCAGAGTGAACAGAAG 58.696 41.667 7.93 0.00 39.45 2.85
3248 4232 3.056962 TCAGAGTGAACAGAAGCTAGCAG 60.057 47.826 18.83 6.22 0.00 4.24
3269 4254 2.781681 AGGTTGGCGCTATAGTGTTT 57.218 45.000 14.57 0.00 0.00 2.83
3276 4261 4.013728 TGGCGCTATAGTGTTTGGAAATT 58.986 39.130 14.57 0.00 0.00 1.82
3284 4269 7.761249 GCTATAGTGTTTGGAAATTCATGCTTT 59.239 33.333 0.84 0.00 0.00 3.51
3290 4275 7.437862 GTGTTTGGAAATTCATGCTTTCTGTTA 59.562 33.333 15.69 3.65 33.93 2.41
3298 4283 5.710513 TCATGCTTTCTGTTAAACATGCT 57.289 34.783 0.00 0.00 35.89 3.79
3310 4295 7.708322 TCTGTTAAACATGCTACAAAATGCAAA 59.292 29.630 0.00 0.00 42.74 3.68
3314 4299 5.910637 ACATGCTACAAAATGCAAAGTTG 57.089 34.783 0.00 0.00 42.74 3.16
3315 4300 4.751098 ACATGCTACAAAATGCAAAGTTGG 59.249 37.500 10.88 0.00 42.74 3.77
3316 4301 3.129871 TGCTACAAAATGCAAAGTTGGC 58.870 40.909 10.88 0.00 36.15 4.52
3317 4302 3.181467 TGCTACAAAATGCAAAGTTGGCT 60.181 39.130 3.39 0.00 36.15 4.75
3318 4303 3.429881 GCTACAAAATGCAAAGTTGGCTC 59.570 43.478 3.39 0.00 0.00 4.70
3319 4304 3.825143 ACAAAATGCAAAGTTGGCTCT 57.175 38.095 3.39 0.00 0.00 4.09
3320 4305 4.141233 ACAAAATGCAAAGTTGGCTCTT 57.859 36.364 3.39 0.00 0.00 2.85
3321 4306 5.275067 ACAAAATGCAAAGTTGGCTCTTA 57.725 34.783 3.39 0.00 0.00 2.10
3322 4307 5.857268 ACAAAATGCAAAGTTGGCTCTTAT 58.143 33.333 3.39 0.00 0.00 1.73
3323 4308 5.697633 ACAAAATGCAAAGTTGGCTCTTATG 59.302 36.000 3.39 0.00 0.00 1.90
3324 4309 4.460948 AATGCAAAGTTGGCTCTTATGG 57.539 40.909 3.39 0.00 0.00 2.74
3325 4310 2.875296 TGCAAAGTTGGCTCTTATGGT 58.125 42.857 3.39 0.00 0.00 3.55
3326 4311 2.557924 TGCAAAGTTGGCTCTTATGGTG 59.442 45.455 3.39 0.00 0.00 4.17
3327 4312 2.558359 GCAAAGTTGGCTCTTATGGTGT 59.442 45.455 0.00 0.00 0.00 4.16
3328 4313 3.005791 GCAAAGTTGGCTCTTATGGTGTT 59.994 43.478 0.00 0.00 0.00 3.32
3329 4314 4.501400 GCAAAGTTGGCTCTTATGGTGTTT 60.501 41.667 0.00 0.00 0.00 2.83
3330 4315 4.853924 AAGTTGGCTCTTATGGTGTTTG 57.146 40.909 0.00 0.00 0.00 2.93
3331 4316 3.832527 AGTTGGCTCTTATGGTGTTTGT 58.167 40.909 0.00 0.00 0.00 2.83
3332 4317 4.215109 AGTTGGCTCTTATGGTGTTTGTT 58.785 39.130 0.00 0.00 0.00 2.83
3333 4318 4.278419 AGTTGGCTCTTATGGTGTTTGTTC 59.722 41.667 0.00 0.00 0.00 3.18
3334 4319 3.826524 TGGCTCTTATGGTGTTTGTTCA 58.173 40.909 0.00 0.00 0.00 3.18
3335 4320 4.211125 TGGCTCTTATGGTGTTTGTTCAA 58.789 39.130 0.00 0.00 0.00 2.69
3336 4321 4.832266 TGGCTCTTATGGTGTTTGTTCAAT 59.168 37.500 0.00 0.00 0.00 2.57
3337 4322 5.048083 TGGCTCTTATGGTGTTTGTTCAATC 60.048 40.000 0.00 0.00 0.00 2.67
3338 4323 5.402398 GCTCTTATGGTGTTTGTTCAATCC 58.598 41.667 0.00 0.00 0.00 3.01
3339 4324 5.048083 GCTCTTATGGTGTTTGTTCAATCCA 60.048 40.000 0.00 0.00 0.00 3.41
3340 4325 6.516527 GCTCTTATGGTGTTTGTTCAATCCAA 60.517 38.462 0.00 0.00 0.00 3.53
3341 4326 6.744112 TCTTATGGTGTTTGTTCAATCCAAC 58.256 36.000 0.00 2.90 0.00 3.77
3342 4327 3.810310 TGGTGTTTGTTCAATCCAACC 57.190 42.857 0.00 0.00 0.00 3.77
3343 4328 2.099921 TGGTGTTTGTTCAATCCAACCG 59.900 45.455 0.00 0.00 0.00 4.44
3344 4329 2.100087 GGTGTTTGTTCAATCCAACCGT 59.900 45.455 0.00 0.00 0.00 4.83
3345 4330 3.429684 GGTGTTTGTTCAATCCAACCGTT 60.430 43.478 0.00 0.00 0.00 4.44
3346 4331 3.549873 GTGTTTGTTCAATCCAACCGTTG 59.450 43.478 4.12 4.12 0.00 4.10
3347 4332 3.193691 TGTTTGTTCAATCCAACCGTTGT 59.806 39.130 10.34 0.00 0.00 3.32
3348 4333 4.177783 GTTTGTTCAATCCAACCGTTGTT 58.822 39.130 10.34 0.00 34.14 2.83
3349 4334 5.105877 TGTTTGTTCAATCCAACCGTTGTTA 60.106 36.000 10.34 0.00 32.09 2.41
3350 4335 4.822036 TGTTCAATCCAACCGTTGTTAG 57.178 40.909 10.34 0.00 32.09 2.34
3351 4336 4.200874 TGTTCAATCCAACCGTTGTTAGT 58.799 39.130 10.34 0.00 32.09 2.24
3352 4337 4.641094 TGTTCAATCCAACCGTTGTTAGTT 59.359 37.500 10.34 0.00 32.09 2.24
3353 4338 4.822036 TCAATCCAACCGTTGTTAGTTG 57.178 40.909 10.34 8.92 42.41 3.16
3354 4339 4.200874 TCAATCCAACCGTTGTTAGTTGT 58.799 39.130 10.34 0.00 41.42 3.32
3355 4340 5.366460 TCAATCCAACCGTTGTTAGTTGTA 58.634 37.500 10.34 0.00 41.42 2.41
3356 4341 5.821470 TCAATCCAACCGTTGTTAGTTGTAA 59.179 36.000 10.34 0.00 41.42 2.41
3357 4342 6.487331 TCAATCCAACCGTTGTTAGTTGTAAT 59.513 34.615 10.34 0.00 41.42 1.89
3358 4343 5.676532 TCCAACCGTTGTTAGTTGTAATG 57.323 39.130 10.34 0.00 41.42 1.90
3359 4344 4.515944 TCCAACCGTTGTTAGTTGTAATGG 59.484 41.667 10.34 0.00 41.42 3.16
3360 4345 4.320641 CCAACCGTTGTTAGTTGTAATGGG 60.321 45.833 10.34 0.00 41.42 4.00
3361 4346 4.354893 ACCGTTGTTAGTTGTAATGGGA 57.645 40.909 0.00 0.00 35.32 4.37
3362 4347 4.320870 ACCGTTGTTAGTTGTAATGGGAG 58.679 43.478 0.00 0.00 35.32 4.30
3363 4348 3.126343 CCGTTGTTAGTTGTAATGGGAGC 59.874 47.826 0.00 0.00 0.00 4.70
3364 4349 3.749088 CGTTGTTAGTTGTAATGGGAGCA 59.251 43.478 0.00 0.00 0.00 4.26
3365 4350 4.142902 CGTTGTTAGTTGTAATGGGAGCAG 60.143 45.833 0.00 0.00 0.00 4.24
3366 4351 4.901197 TGTTAGTTGTAATGGGAGCAGA 57.099 40.909 0.00 0.00 0.00 4.26
3367 4352 5.235850 TGTTAGTTGTAATGGGAGCAGAA 57.764 39.130 0.00 0.00 0.00 3.02
3368 4353 5.001232 TGTTAGTTGTAATGGGAGCAGAAC 58.999 41.667 0.00 0.00 0.00 3.01
3369 4354 3.788227 AGTTGTAATGGGAGCAGAACA 57.212 42.857 0.00 0.00 0.00 3.18
3370 4355 3.412386 AGTTGTAATGGGAGCAGAACAC 58.588 45.455 0.00 0.00 0.00 3.32
3371 4356 3.073062 AGTTGTAATGGGAGCAGAACACT 59.927 43.478 0.00 0.00 0.00 3.55
3372 4357 3.057969 TGTAATGGGAGCAGAACACTG 57.942 47.619 0.00 0.00 35.06 3.66
3373 4358 2.371841 TGTAATGGGAGCAGAACACTGT 59.628 45.455 0.00 0.00 34.51 3.55
3374 4359 2.191128 AATGGGAGCAGAACACTGTC 57.809 50.000 0.00 0.00 34.51 3.51
3375 4360 1.356124 ATGGGAGCAGAACACTGTCT 58.644 50.000 0.00 0.00 34.51 3.41
3376 4361 0.681733 TGGGAGCAGAACACTGTCTC 59.318 55.000 0.00 0.00 35.83 3.36
3377 4362 0.389166 GGGAGCAGAACACTGTCTCG 60.389 60.000 0.00 0.00 36.57 4.04
3378 4363 0.315568 GGAGCAGAACACTGTCTCGT 59.684 55.000 0.00 0.00 36.57 4.18
3379 4364 1.269831 GGAGCAGAACACTGTCTCGTT 60.270 52.381 0.00 0.00 36.57 3.85
3380 4365 1.789464 GAGCAGAACACTGTCTCGTTG 59.211 52.381 0.00 0.00 34.51 4.10
3381 4366 0.233332 GCAGAACACTGTCTCGTTGC 59.767 55.000 0.00 0.00 34.51 4.17
3382 4367 1.858091 CAGAACACTGTCTCGTTGCT 58.142 50.000 0.00 0.00 0.00 3.91
3383 4368 1.524355 CAGAACACTGTCTCGTTGCTG 59.476 52.381 0.00 0.00 0.00 4.41
3384 4369 0.233332 GAACACTGTCTCGTTGCTGC 59.767 55.000 0.00 0.00 0.00 5.25
3385 4370 1.160329 AACACTGTCTCGTTGCTGCC 61.160 55.000 0.00 0.00 0.00 4.85
3386 4371 1.301244 CACTGTCTCGTTGCTGCCT 60.301 57.895 0.00 0.00 0.00 4.75
3387 4372 1.301244 ACTGTCTCGTTGCTGCCTG 60.301 57.895 0.00 0.00 0.00 4.85
3388 4373 1.301244 CTGTCTCGTTGCTGCCTGT 60.301 57.895 0.00 0.00 0.00 4.00
3389 4374 0.882042 CTGTCTCGTTGCTGCCTGTT 60.882 55.000 0.00 0.00 0.00 3.16
3390 4375 1.159713 TGTCTCGTTGCTGCCTGTTG 61.160 55.000 0.00 0.00 0.00 3.33
3391 4376 0.880278 GTCTCGTTGCTGCCTGTTGA 60.880 55.000 0.00 0.00 0.00 3.18
3392 4377 0.601046 TCTCGTTGCTGCCTGTTGAG 60.601 55.000 0.00 0.00 0.00 3.02
3393 4378 0.882042 CTCGTTGCTGCCTGTTGAGT 60.882 55.000 0.00 0.00 0.00 3.41
3394 4379 1.159713 TCGTTGCTGCCTGTTGAGTG 61.160 55.000 0.00 0.00 0.00 3.51
3395 4380 1.159713 CGTTGCTGCCTGTTGAGTGA 61.160 55.000 0.00 0.00 0.00 3.41
3396 4381 1.242076 GTTGCTGCCTGTTGAGTGAT 58.758 50.000 0.00 0.00 0.00 3.06
3397 4382 1.610522 GTTGCTGCCTGTTGAGTGATT 59.389 47.619 0.00 0.00 0.00 2.57
3398 4383 2.813754 GTTGCTGCCTGTTGAGTGATTA 59.186 45.455 0.00 0.00 0.00 1.75
3399 4384 2.426522 TGCTGCCTGTTGAGTGATTAC 58.573 47.619 0.00 0.00 0.00 1.89
3400 4385 1.394917 GCTGCCTGTTGAGTGATTACG 59.605 52.381 0.00 0.00 0.00 3.18
3401 4386 2.002586 CTGCCTGTTGAGTGATTACGG 58.997 52.381 0.00 0.00 0.00 4.02
3402 4387 1.346395 TGCCTGTTGAGTGATTACGGT 59.654 47.619 0.00 0.00 0.00 4.83
3403 4388 2.224426 TGCCTGTTGAGTGATTACGGTT 60.224 45.455 0.00 0.00 0.00 4.44
3404 4389 2.415512 GCCTGTTGAGTGATTACGGTTC 59.584 50.000 0.00 0.00 0.00 3.62
3405 4390 3.000727 CCTGTTGAGTGATTACGGTTCC 58.999 50.000 0.00 0.00 0.00 3.62
3406 4391 2.666508 CTGTTGAGTGATTACGGTTCCG 59.333 50.000 9.81 9.81 0.00 4.30
3407 4392 2.296752 TGTTGAGTGATTACGGTTCCGA 59.703 45.455 18.28 0.00 0.00 4.55
3408 4393 2.921754 GTTGAGTGATTACGGTTCCGAG 59.078 50.000 18.28 0.00 0.00 4.63
3409 4394 1.135199 TGAGTGATTACGGTTCCGAGC 60.135 52.381 18.28 0.00 0.00 5.03
3410 4395 1.134560 GAGTGATTACGGTTCCGAGCT 59.865 52.381 18.28 0.00 0.00 4.09
3411 4396 1.135083 AGTGATTACGGTTCCGAGCTG 60.135 52.381 18.28 0.00 0.00 4.24
3412 4397 1.135199 GTGATTACGGTTCCGAGCTGA 60.135 52.381 18.28 0.00 0.00 4.26
3413 4398 1.135199 TGATTACGGTTCCGAGCTGAC 60.135 52.381 18.28 4.99 0.00 3.51
3414 4399 0.175073 ATTACGGTTCCGAGCTGACC 59.825 55.000 18.28 0.00 0.00 4.02
3415 4400 1.180456 TTACGGTTCCGAGCTGACCA 61.180 55.000 18.28 0.00 32.95 4.02
3416 4401 1.180456 TACGGTTCCGAGCTGACCAA 61.180 55.000 18.28 0.00 32.95 3.67
3417 4402 1.301401 CGGTTCCGAGCTGACCAAA 60.301 57.895 5.19 0.00 32.95 3.28
3418 4403 0.882927 CGGTTCCGAGCTGACCAAAA 60.883 55.000 5.19 0.00 32.95 2.44
3419 4404 1.534729 GGTTCCGAGCTGACCAAAAT 58.465 50.000 0.00 0.00 33.61 1.82
3420 4405 1.886542 GGTTCCGAGCTGACCAAAATT 59.113 47.619 0.00 0.00 33.61 1.82
3421 4406 2.095212 GGTTCCGAGCTGACCAAAATTC 60.095 50.000 0.00 0.00 33.61 2.17
3422 4407 2.552315 GTTCCGAGCTGACCAAAATTCA 59.448 45.455 0.00 0.00 0.00 2.57
3423 4408 2.151202 TCCGAGCTGACCAAAATTCAC 58.849 47.619 0.00 0.00 0.00 3.18
3424 4409 1.879380 CCGAGCTGACCAAAATTCACA 59.121 47.619 0.00 0.00 0.00 3.58
3425 4410 2.095567 CCGAGCTGACCAAAATTCACAG 60.096 50.000 0.00 0.00 0.00 3.66
3429 4414 3.996150 CTGACCAAAATTCACAGCACT 57.004 42.857 0.00 0.00 0.00 4.40
3431 4416 5.039480 CTGACCAAAATTCACAGCACTAG 57.961 43.478 0.00 0.00 0.00 2.57
3432 4417 4.713553 TGACCAAAATTCACAGCACTAGA 58.286 39.130 0.00 0.00 0.00 2.43
3433 4418 5.316167 TGACCAAAATTCACAGCACTAGAT 58.684 37.500 0.00 0.00 0.00 1.98
3434 4419 5.769662 TGACCAAAATTCACAGCACTAGATT 59.230 36.000 0.00 0.00 0.00 2.40
3435 4420 6.939730 TGACCAAAATTCACAGCACTAGATTA 59.060 34.615 0.00 0.00 0.00 1.75
3436 4421 7.094805 TGACCAAAATTCACAGCACTAGATTAC 60.095 37.037 0.00 0.00 0.00 1.89
3437 4422 6.714810 ACCAAAATTCACAGCACTAGATTACA 59.285 34.615 0.00 0.00 0.00 2.41
3438 4423 7.394359 ACCAAAATTCACAGCACTAGATTACAT 59.606 33.333 0.00 0.00 0.00 2.29
3439 4424 7.912250 CCAAAATTCACAGCACTAGATTACATC 59.088 37.037 0.00 0.00 0.00 3.06
3440 4425 6.834959 AATTCACAGCACTAGATTACATCG 57.165 37.500 0.00 0.00 0.00 3.84
3441 4426 4.983671 TCACAGCACTAGATTACATCGT 57.016 40.909 0.00 0.00 0.00 3.73
3442 4427 5.324784 TCACAGCACTAGATTACATCGTT 57.675 39.130 0.00 0.00 0.00 3.85
3443 4428 5.720202 TCACAGCACTAGATTACATCGTTT 58.280 37.500 0.00 0.00 0.00 3.60
3444 4429 5.805486 TCACAGCACTAGATTACATCGTTTC 59.195 40.000 0.00 0.00 0.00 2.78
3445 4430 5.807520 CACAGCACTAGATTACATCGTTTCT 59.192 40.000 0.00 0.00 0.00 2.52
3446 4431 5.807520 ACAGCACTAGATTACATCGTTTCTG 59.192 40.000 0.00 0.00 0.00 3.02
3447 4432 5.233050 CAGCACTAGATTACATCGTTTCTGG 59.767 44.000 0.00 0.00 0.00 3.86
3448 4433 4.025647 GCACTAGATTACATCGTTTCTGGC 60.026 45.833 0.00 0.00 0.00 4.85
3449 4434 5.109210 CACTAGATTACATCGTTTCTGGCA 58.891 41.667 0.00 0.00 0.00 4.92
3450 4435 5.233050 CACTAGATTACATCGTTTCTGGCAG 59.767 44.000 8.58 8.58 0.00 4.85
3451 4436 4.207891 AGATTACATCGTTTCTGGCAGT 57.792 40.909 15.27 0.00 0.00 4.40
3452 4437 4.579869 AGATTACATCGTTTCTGGCAGTT 58.420 39.130 15.27 0.00 0.00 3.16
3453 4438 5.003804 AGATTACATCGTTTCTGGCAGTTT 58.996 37.500 15.27 0.00 0.00 2.66
3454 4439 4.742438 TTACATCGTTTCTGGCAGTTTC 57.258 40.909 15.27 5.09 0.00 2.78
3455 4440 2.851195 ACATCGTTTCTGGCAGTTTCT 58.149 42.857 15.27 0.00 0.00 2.52
3456 4441 2.549754 ACATCGTTTCTGGCAGTTTCTG 59.450 45.455 15.27 8.41 34.12 3.02
3457 4442 2.613026 TCGTTTCTGGCAGTTTCTGA 57.387 45.000 15.27 4.87 32.44 3.27
3458 4443 2.912771 TCGTTTCTGGCAGTTTCTGAA 58.087 42.857 15.27 0.00 32.44 3.02
3459 4444 3.476552 TCGTTTCTGGCAGTTTCTGAAT 58.523 40.909 15.27 0.00 32.44 2.57
3460 4445 4.637276 TCGTTTCTGGCAGTTTCTGAATA 58.363 39.130 15.27 0.00 32.44 1.75
3461 4446 4.451096 TCGTTTCTGGCAGTTTCTGAATAC 59.549 41.667 15.27 0.00 32.44 1.89
3462 4447 4.452455 CGTTTCTGGCAGTTTCTGAATACT 59.548 41.667 15.27 0.00 32.44 2.12
3463 4448 5.615544 CGTTTCTGGCAGTTTCTGAATACTG 60.616 44.000 15.27 19.40 43.58 2.74
3464 4449 4.890158 TCTGGCAGTTTCTGAATACTGA 57.110 40.909 24.09 11.81 43.45 3.41
3465 4450 5.227569 TCTGGCAGTTTCTGAATACTGAA 57.772 39.130 24.09 15.49 43.45 3.02
3466 4451 5.240891 TCTGGCAGTTTCTGAATACTGAAG 58.759 41.667 24.09 20.48 43.45 3.02
3467 4452 4.973168 TGGCAGTTTCTGAATACTGAAGT 58.027 39.130 24.09 0.00 43.45 3.01
3468 4453 4.997395 TGGCAGTTTCTGAATACTGAAGTC 59.003 41.667 24.09 15.17 43.45 3.01
3469 4454 4.997395 GGCAGTTTCTGAATACTGAAGTCA 59.003 41.667 24.09 0.00 43.45 3.41
3470 4455 5.106908 GGCAGTTTCTGAATACTGAAGTCAC 60.107 44.000 24.09 12.57 43.45 3.67
3471 4456 5.466728 GCAGTTTCTGAATACTGAAGTCACA 59.533 40.000 24.09 0.00 43.45 3.58
3472 4457 6.347240 GCAGTTTCTGAATACTGAAGTCACAG 60.347 42.308 24.09 0.00 43.45 3.66
3473 4458 6.703607 CAGTTTCTGAATACTGAAGTCACAGT 59.296 38.462 19.17 0.00 43.45 3.55
3474 4459 6.926272 AGTTTCTGAATACTGAAGTCACAGTC 59.074 38.462 4.63 0.00 46.36 3.51
3475 4460 6.656632 TTCTGAATACTGAAGTCACAGTCT 57.343 37.500 4.63 0.00 46.36 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 124 9.392259 CATCATGGCAACTCATATACAATAGAT 57.608 33.333 0.00 0.00 37.61 1.98
133 139 4.764679 TCAGTGTAAACATCATGGCAAC 57.235 40.909 0.00 0.00 0.00 4.17
506 519 6.128227 CCGTTTTCACCATTAAATCCGTCTTA 60.128 38.462 0.00 0.00 0.00 2.10
507 520 5.335348 CCGTTTTCACCATTAAATCCGTCTT 60.335 40.000 0.00 0.00 0.00 3.01
559 572 7.711339 TGGTTTTCGGCTTAAAAATGTTGTATT 59.289 29.630 0.00 0.00 30.53 1.89
592 606 7.148836 CGTATGAATAGATGACATCAGCAGAAC 60.149 40.741 17.57 10.05 34.14 3.01
668 682 2.433491 GTGCATCGCCCACACGTA 60.433 61.111 0.00 0.00 33.50 3.57
680 694 4.927782 ACGCCCACACGTGTGCAT 62.928 61.111 37.33 17.87 46.28 3.96
687 701 1.400500 GGAAATGTTAACGCCCACACG 60.400 52.381 0.26 0.00 39.50 4.49
688 702 1.400500 CGGAAATGTTAACGCCCACAC 60.400 52.381 0.26 0.00 0.00 3.82
689 703 0.875728 CGGAAATGTTAACGCCCACA 59.124 50.000 0.26 0.00 0.00 4.17
690 704 0.876399 ACGGAAATGTTAACGCCCAC 59.124 50.000 0.26 0.00 0.00 4.61
691 705 1.606903 AACGGAAATGTTAACGCCCA 58.393 45.000 0.26 0.00 0.00 5.36
692 706 2.710220 AAACGGAAATGTTAACGCCC 57.290 45.000 0.26 0.00 0.00 6.13
693 707 4.972201 TGATAAACGGAAATGTTAACGCC 58.028 39.130 0.26 0.00 0.00 5.68
694 708 6.505732 GCAATGATAAACGGAAATGTTAACGC 60.506 38.462 0.26 0.00 0.00 4.84
695 709 6.524933 TGCAATGATAAACGGAAATGTTAACG 59.475 34.615 0.26 0.00 0.00 3.18
696 710 7.804614 TGCAATGATAAACGGAAATGTTAAC 57.195 32.000 0.00 0.00 0.00 2.01
715 729 6.827586 AAAATGCCAAGAAAATCATGCAAT 57.172 29.167 0.00 0.00 0.00 3.56
716 730 6.039493 ACAAAAATGCCAAGAAAATCATGCAA 59.961 30.769 0.00 0.00 0.00 4.08
717 731 5.531659 ACAAAAATGCCAAGAAAATCATGCA 59.468 32.000 0.00 0.00 0.00 3.96
718 732 6.004408 ACAAAAATGCCAAGAAAATCATGC 57.996 33.333 0.00 0.00 0.00 4.06
719 733 8.314143 ACTACAAAAATGCCAAGAAAATCATG 57.686 30.769 0.00 0.00 0.00 3.07
720 734 9.995003 TTACTACAAAAATGCCAAGAAAATCAT 57.005 25.926 0.00 0.00 0.00 2.45
721 735 9.255304 GTTACTACAAAAATGCCAAGAAAATCA 57.745 29.630 0.00 0.00 0.00 2.57
722 736 9.255304 TGTTACTACAAAAATGCCAAGAAAATC 57.745 29.630 0.00 0.00 0.00 2.17
723 737 9.260002 CTGTTACTACAAAAATGCCAAGAAAAT 57.740 29.630 0.00 0.00 32.92 1.82
724 738 8.254508 ACTGTTACTACAAAAATGCCAAGAAAA 58.745 29.630 0.00 0.00 32.92 2.29
725 739 7.777095 ACTGTTACTACAAAAATGCCAAGAAA 58.223 30.769 0.00 0.00 32.92 2.52
726 740 7.341445 ACTGTTACTACAAAAATGCCAAGAA 57.659 32.000 0.00 0.00 32.92 2.52
727 741 6.952773 ACTGTTACTACAAAAATGCCAAGA 57.047 33.333 0.00 0.00 32.92 3.02
728 742 7.516627 GCAAACTGTTACTACAAAAATGCCAAG 60.517 37.037 0.00 0.00 32.92 3.61
729 743 6.256757 GCAAACTGTTACTACAAAAATGCCAA 59.743 34.615 0.00 0.00 32.92 4.52
730 744 5.751028 GCAAACTGTTACTACAAAAATGCCA 59.249 36.000 0.00 0.00 32.92 4.92
731 745 5.751028 TGCAAACTGTTACTACAAAAATGCC 59.249 36.000 0.00 0.00 32.85 4.40
732 746 6.475402 AGTGCAAACTGTTACTACAAAAATGC 59.525 34.615 0.00 0.00 32.92 3.56
733 747 7.097047 CGAGTGCAAACTGTTACTACAAAAATG 60.097 37.037 0.00 0.00 32.92 2.32
734 748 6.910433 CGAGTGCAAACTGTTACTACAAAAAT 59.090 34.615 0.00 0.00 32.92 1.82
735 749 6.092396 TCGAGTGCAAACTGTTACTACAAAAA 59.908 34.615 0.00 0.00 32.92 1.94
736 750 5.581479 TCGAGTGCAAACTGTTACTACAAAA 59.419 36.000 0.00 0.00 32.92 2.44
737 751 5.110598 TCGAGTGCAAACTGTTACTACAAA 58.889 37.500 0.00 0.00 32.92 2.83
738 752 4.684877 TCGAGTGCAAACTGTTACTACAA 58.315 39.130 0.00 0.00 32.92 2.41
739 753 4.310357 TCGAGTGCAAACTGTTACTACA 57.690 40.909 0.00 0.00 0.00 2.74
740 754 4.374707 CGTTCGAGTGCAAACTGTTACTAC 60.375 45.833 0.00 0.00 0.00 2.73
741 755 3.732219 CGTTCGAGTGCAAACTGTTACTA 59.268 43.478 0.00 0.00 0.00 1.82
742 756 2.538449 CGTTCGAGTGCAAACTGTTACT 59.462 45.455 0.00 0.00 0.00 2.24
743 757 2.348218 CCGTTCGAGTGCAAACTGTTAC 60.348 50.000 0.00 0.00 0.00 2.50
744 758 1.862201 CCGTTCGAGTGCAAACTGTTA 59.138 47.619 0.00 0.00 0.00 2.41
745 759 0.655733 CCGTTCGAGTGCAAACTGTT 59.344 50.000 0.00 0.00 0.00 3.16
746 760 0.179094 TCCGTTCGAGTGCAAACTGT 60.179 50.000 0.00 0.00 0.00 3.55
747 761 1.126846 GATCCGTTCGAGTGCAAACTG 59.873 52.381 0.00 0.00 0.00 3.16
748 762 1.000955 AGATCCGTTCGAGTGCAAACT 59.999 47.619 0.00 0.00 0.00 2.66
749 763 1.390463 GAGATCCGTTCGAGTGCAAAC 59.610 52.381 0.00 0.00 0.00 2.93
750 764 1.000394 TGAGATCCGTTCGAGTGCAAA 60.000 47.619 0.00 0.00 0.00 3.68
790 813 1.153628 CCGACTGTTCACGGGATCC 60.154 63.158 1.92 1.92 44.59 3.36
814 837 2.360475 GCTCTGGTGTTCAGGCCC 60.360 66.667 0.00 0.00 43.53 5.80
815 838 1.673665 CAGCTCTGGTGTTCAGGCC 60.674 63.158 0.00 0.00 43.53 5.19
816 839 1.673665 CCAGCTCTGGTGTTCAGGC 60.674 63.158 7.75 0.00 45.53 4.85
817 840 4.709840 CCAGCTCTGGTGTTCAGG 57.290 61.111 7.75 0.00 45.53 3.86
826 849 1.739562 GAGACGGTTGCCAGCTCTG 60.740 63.158 0.00 0.00 0.00 3.35
827 850 2.210013 TGAGACGGTTGCCAGCTCT 61.210 57.895 0.00 0.00 0.00 4.09
828 851 2.029844 GTGAGACGGTTGCCAGCTC 61.030 63.158 0.00 0.00 0.00 4.09
829 852 2.031163 GTGAGACGGTTGCCAGCT 59.969 61.111 0.00 0.00 0.00 4.24
830 853 3.414700 CGTGAGACGGTTGCCAGC 61.415 66.667 0.00 0.00 38.08 4.85
831 854 1.300620 TTCGTGAGACGGTTGCCAG 60.301 57.895 0.00 0.00 42.81 4.85
832 855 1.593209 GTTCGTGAGACGGTTGCCA 60.593 57.895 0.00 0.00 42.81 4.92
851 874 1.219664 CGGTTATGAGCCGGACCAA 59.780 57.895 5.05 0.00 44.98 3.67
978 1007 0.250513 GCAGGGATCGAGTTCTTGGT 59.749 55.000 0.00 0.00 0.00 3.67
993 1022 2.036098 TGTTGCTCCATGGGCAGG 59.964 61.111 22.00 8.68 40.90 4.85
994 1023 2.693762 CGTGTTGCTCCATGGGCAG 61.694 63.158 22.00 11.22 40.90 4.85
995 1024 2.672651 CGTGTTGCTCCATGGGCA 60.673 61.111 20.10 20.10 37.97 5.36
996 1025 2.359850 TCGTGTTGCTCCATGGGC 60.360 61.111 13.02 14.76 0.00 5.36
1058 1087 4.144727 ACGGAGCGGGATCCTCCT 62.145 66.667 12.58 8.07 45.37 3.69
1178 1207 2.961526 TACGTCAAGATCCTGCTTCC 57.038 50.000 0.00 0.00 0.00 3.46
1194 1223 5.353956 TCTGAACCACCATCAATCAATTACG 59.646 40.000 0.00 0.00 0.00 3.18
1266 1296 0.667993 TGCGCCAAAGAAAGAACCAG 59.332 50.000 4.18 0.00 0.00 4.00
1358 1388 1.218196 TGAGTCTCCATAGGGTCCTCC 59.782 57.143 0.00 0.00 34.93 4.30
1559 1589 1.300697 GGCAGTGAACTTCGTCGGT 60.301 57.895 0.00 0.00 0.00 4.69
1658 1688 0.803117 CTGAGAAGTCCTCGTGCGTA 59.197 55.000 0.00 0.00 44.92 4.42
1676 1706 1.367840 GATCTTACCGGCCATCGCT 59.632 57.895 0.00 0.00 37.59 4.93
1697 1727 2.485426 ACAGAATGCTTCGGATTGTGTG 59.515 45.455 9.43 0.00 42.53 3.82
1698 1728 2.783135 ACAGAATGCTTCGGATTGTGT 58.217 42.857 5.32 5.32 42.53 3.72
1699 1729 3.438087 AGAACAGAATGCTTCGGATTGTG 59.562 43.478 4.20 4.20 42.53 3.33
1749 1779 2.814919 ACTCGGTTCAGTGAGTACAGAG 59.185 50.000 18.11 18.11 43.36 3.35
1766 1796 1.799181 CGGGCACTGACAGATTACTCG 60.799 57.143 10.08 3.20 36.31 4.18
1850 1880 1.258445 CGGGGAGTACTGCTTCCTGT 61.258 60.000 14.52 0.00 43.17 4.00
2073 2103 3.764466 CTCGCCCAGTCCGAAGCT 61.764 66.667 0.00 0.00 33.92 3.74
2282 2315 3.165160 ATGCCGTACATCCTCCCGC 62.165 63.158 0.00 0.00 31.52 6.13
2388 2421 0.898789 TGTCCTGGTTCTCTCCGGAC 60.899 60.000 0.00 14.70 43.92 4.79
2415 2448 0.033699 AGAATTGAGAAGCAGGGGCC 60.034 55.000 0.00 0.00 42.56 5.80
2417 2450 2.795231 TGAGAATTGAGAAGCAGGGG 57.205 50.000 0.00 0.00 0.00 4.79
2422 2455 4.698583 AGTTGCATGAGAATTGAGAAGC 57.301 40.909 0.00 0.00 0.00 3.86
2437 2470 1.726865 CCTGCACGACAAAGTTGCA 59.273 52.632 0.00 0.00 0.00 4.08
2438 2471 1.658409 GCCTGCACGACAAAGTTGC 60.658 57.895 0.00 0.00 0.00 4.17
2439 2472 0.381801 AAGCCTGCACGACAAAGTTG 59.618 50.000 0.00 0.00 0.00 3.16
2440 2473 1.961793 TAAGCCTGCACGACAAAGTT 58.038 45.000 0.00 0.00 0.00 2.66
2441 2474 1.806542 CATAAGCCTGCACGACAAAGT 59.193 47.619 0.00 0.00 0.00 2.66
2442 2475 1.806542 ACATAAGCCTGCACGACAAAG 59.193 47.619 0.00 0.00 0.00 2.77
2443 2476 1.535028 CACATAAGCCTGCACGACAAA 59.465 47.619 0.00 0.00 0.00 2.83
2444 2477 1.155889 CACATAAGCCTGCACGACAA 58.844 50.000 0.00 0.00 0.00 3.18
2445 2478 0.034756 ACACATAAGCCTGCACGACA 59.965 50.000 0.00 0.00 0.00 4.35
2446 2479 2.004583 TACACATAAGCCTGCACGAC 57.995 50.000 0.00 0.00 0.00 4.34
2447 2480 2.093711 ACATACACATAAGCCTGCACGA 60.094 45.455 0.00 0.00 0.00 4.35
2448 2481 2.030823 CACATACACATAAGCCTGCACG 59.969 50.000 0.00 0.00 0.00 5.34
2449 2482 3.009723 ACACATACACATAAGCCTGCAC 58.990 45.455 0.00 0.00 0.00 4.57
2450 2483 3.348647 ACACATACACATAAGCCTGCA 57.651 42.857 0.00 0.00 0.00 4.41
2451 2484 3.941483 AGAACACATACACATAAGCCTGC 59.059 43.478 0.00 0.00 0.00 4.85
2452 2485 5.063944 GTCAGAACACATACACATAAGCCTG 59.936 44.000 0.00 0.00 0.00 4.85
2453 2486 5.178797 GTCAGAACACATACACATAAGCCT 58.821 41.667 0.00 0.00 0.00 4.58
2454 2487 4.332819 GGTCAGAACACATACACATAAGCC 59.667 45.833 0.00 0.00 0.00 4.35
2455 2488 5.063944 CAGGTCAGAACACATACACATAAGC 59.936 44.000 0.00 0.00 0.00 3.09
2458 2491 4.020662 TGCAGGTCAGAACACATACACATA 60.021 41.667 0.00 0.00 0.00 2.29
2465 2498 4.942761 AAAATTGCAGGTCAGAACACAT 57.057 36.364 0.00 0.00 0.00 3.21
2570 2610 2.887152 AGAGGAACACCAAAATGTGCTC 59.113 45.455 0.00 0.00 39.93 4.26
2571 2611 2.949447 AGAGGAACACCAAAATGTGCT 58.051 42.857 0.00 0.00 39.93 4.40
2572 2612 3.319122 AGAAGAGGAACACCAAAATGTGC 59.681 43.478 0.00 0.00 39.93 4.57
2573 2613 4.823989 AGAGAAGAGGAACACCAAAATGTG 59.176 41.667 0.00 0.00 42.05 3.21
2574 2614 4.823989 CAGAGAAGAGGAACACCAAAATGT 59.176 41.667 0.00 0.00 0.00 2.71
2575 2615 5.065914 TCAGAGAAGAGGAACACCAAAATG 58.934 41.667 0.00 0.00 0.00 2.32
2576 2616 5.310409 TCAGAGAAGAGGAACACCAAAAT 57.690 39.130 0.00 0.00 0.00 1.82
2577 2617 4.771114 TCAGAGAAGAGGAACACCAAAA 57.229 40.909 0.00 0.00 0.00 2.44
2601 2641 6.435904 CACCAAGGGATTTCAAGGTATGTAAA 59.564 38.462 0.00 0.00 0.00 2.01
2614 2654 2.629617 CAGAAACAGCACCAAGGGATTT 59.370 45.455 0.00 0.00 0.00 2.17
2665 3210 2.158943 CCCTGGCCCGTTAAAACAAAAA 60.159 45.455 0.00 0.00 0.00 1.94
2668 3213 0.185416 TCCCTGGCCCGTTAAAACAA 59.815 50.000 0.00 0.00 0.00 2.83
2669 3214 0.250989 CTCCCTGGCCCGTTAAAACA 60.251 55.000 0.00 0.00 0.00 2.83
2671 3216 1.381076 CCTCCCTGGCCCGTTAAAA 59.619 57.895 0.00 0.00 0.00 1.52
2672 3217 2.608550 CCCTCCCTGGCCCGTTAAA 61.609 63.158 0.00 0.00 0.00 1.52
2696 3241 3.416156 ACAGCTTCAACTCAAAGATCCC 58.584 45.455 0.00 0.00 0.00 3.85
2697 3242 5.448360 GCATACAGCTTCAACTCAAAGATCC 60.448 44.000 0.00 0.00 41.15 3.36
2719 3264 7.828717 TCTTAATATGTGGAGAAATCAACTGCA 59.171 33.333 0.00 0.00 33.66 4.41
2765 3610 3.072184 ACAGCTGAACTCAAAGATCACCT 59.928 43.478 23.35 0.00 0.00 4.00
2845 3817 7.884877 TGAGTTCATTCTGAATTTCAGGTACAT 59.115 33.333 22.86 9.91 44.39 2.29
2847 3819 7.672983 TGAGTTCATTCTGAATTTCAGGTAC 57.327 36.000 22.86 12.53 44.39 3.34
2850 3822 8.053026 AGATTGAGTTCATTCTGAATTTCAGG 57.947 34.615 22.86 9.94 44.39 3.86
3085 4068 9.066892 CCAAATGTACTTTGCCATACTATATGT 57.933 33.333 10.51 0.00 42.46 2.29
3086 4069 9.066892 ACCAAATGTACTTTGCCATACTATATG 57.933 33.333 10.51 0.00 42.46 1.78
3087 4070 9.066892 CACCAAATGTACTTTGCCATACTATAT 57.933 33.333 10.51 0.00 42.46 0.86
3088 4071 8.050325 ACACCAAATGTACTTTGCCATACTATA 58.950 33.333 10.51 0.00 42.46 1.31
3135 4119 6.378745 ACAAAAACTAATTACAGGTCCCCTT 58.621 36.000 0.00 0.00 0.00 3.95
3140 4124 6.788930 CGTCGAACAAAAACTAATTACAGGTC 59.211 38.462 0.00 0.00 0.00 3.85
3159 4143 4.993905 TGATCTAGCTGAAATTCGTCGAA 58.006 39.130 10.61 10.61 0.00 3.71
3186 4170 2.423185 CACCACAGTTCAGAGCAACAAA 59.577 45.455 0.00 0.00 0.00 2.83
3190 4174 2.880268 CAATCACCACAGTTCAGAGCAA 59.120 45.455 0.00 0.00 0.00 3.91
3191 4175 2.158769 ACAATCACCACAGTTCAGAGCA 60.159 45.455 0.00 0.00 0.00 4.26
3241 4225 2.754995 GCGCCAACCTTCTGCTAGC 61.755 63.158 8.10 8.10 0.00 3.42
3248 4232 2.311124 ACACTATAGCGCCAACCTTC 57.689 50.000 2.29 0.00 0.00 3.46
3269 4254 7.495901 TGTTTAACAGAAAGCATGAATTTCCA 58.504 30.769 16.07 6.47 37.37 3.53
3276 4261 5.710513 AGCATGTTTAACAGAAAGCATGA 57.289 34.783 14.90 0.00 45.56 3.07
3284 4269 6.743110 TGCATTTTGTAGCATGTTTAACAGA 58.257 32.000 3.63 0.00 35.51 3.41
3290 4275 6.238429 CCAACTTTGCATTTTGTAGCATGTTT 60.238 34.615 0.00 0.00 40.94 2.83
3298 4283 4.935352 AGAGCCAACTTTGCATTTTGTA 57.065 36.364 0.00 0.00 0.00 2.41
3310 4295 3.832527 ACAAACACCATAAGAGCCAACT 58.167 40.909 0.00 0.00 0.00 3.16
3314 4299 4.846779 TTGAACAAACACCATAAGAGCC 57.153 40.909 0.00 0.00 0.00 4.70
3315 4300 5.048083 TGGATTGAACAAACACCATAAGAGC 60.048 40.000 0.00 0.00 0.00 4.09
3316 4301 6.573664 TGGATTGAACAAACACCATAAGAG 57.426 37.500 0.00 0.00 0.00 2.85
3317 4302 6.239176 GGTTGGATTGAACAAACACCATAAGA 60.239 38.462 10.27 0.00 35.64 2.10
3318 4303 5.925969 GGTTGGATTGAACAAACACCATAAG 59.074 40.000 10.27 0.00 35.64 1.73
3319 4304 5.508153 CGGTTGGATTGAACAAACACCATAA 60.508 40.000 10.27 0.00 35.30 1.90
3320 4305 4.022762 CGGTTGGATTGAACAAACACCATA 60.023 41.667 10.27 3.24 35.30 2.74
3321 4306 3.243704 CGGTTGGATTGAACAAACACCAT 60.244 43.478 10.27 0.00 35.30 3.55
3322 4307 2.099921 CGGTTGGATTGAACAAACACCA 59.900 45.455 0.00 0.00 35.30 4.17
3323 4308 2.100087 ACGGTTGGATTGAACAAACACC 59.900 45.455 0.00 0.00 35.30 4.16
3324 4309 3.430333 ACGGTTGGATTGAACAAACAC 57.570 42.857 0.00 0.00 35.30 3.32
3325 4310 3.193691 ACAACGGTTGGATTGAACAAACA 59.806 39.130 23.51 0.00 35.30 2.83
3326 4311 3.776340 ACAACGGTTGGATTGAACAAAC 58.224 40.909 23.51 0.00 34.12 2.93
3327 4312 4.457834 AACAACGGTTGGATTGAACAAA 57.542 36.364 23.51 0.00 35.46 2.83
3328 4313 4.641094 ACTAACAACGGTTGGATTGAACAA 59.359 37.500 23.51 0.00 37.67 2.83
3329 4314 4.200874 ACTAACAACGGTTGGATTGAACA 58.799 39.130 23.51 0.58 37.67 3.18
3330 4315 4.823790 ACTAACAACGGTTGGATTGAAC 57.176 40.909 23.51 0.00 37.67 3.18
3331 4316 4.641094 ACAACTAACAACGGTTGGATTGAA 59.359 37.500 23.51 3.08 37.67 2.69
3332 4317 4.200874 ACAACTAACAACGGTTGGATTGA 58.799 39.130 23.51 4.45 37.67 2.57
3333 4318 4.561735 ACAACTAACAACGGTTGGATTG 57.438 40.909 23.51 20.59 37.67 2.67
3334 4319 6.294286 CCATTACAACTAACAACGGTTGGATT 60.294 38.462 23.51 12.77 37.67 3.01
3335 4320 5.182380 CCATTACAACTAACAACGGTTGGAT 59.818 40.000 23.51 14.61 37.67 3.41
3336 4321 4.515944 CCATTACAACTAACAACGGTTGGA 59.484 41.667 23.51 10.99 37.67 3.53
3337 4322 4.320641 CCCATTACAACTAACAACGGTTGG 60.321 45.833 23.51 9.55 40.91 3.77
3338 4323 4.515944 TCCCATTACAACTAACAACGGTTG 59.484 41.667 18.81 18.81 37.88 3.77
3339 4324 4.716794 TCCCATTACAACTAACAACGGTT 58.283 39.130 0.00 0.00 41.06 4.44
3340 4325 4.320870 CTCCCATTACAACTAACAACGGT 58.679 43.478 0.00 0.00 0.00 4.83
3341 4326 3.126343 GCTCCCATTACAACTAACAACGG 59.874 47.826 0.00 0.00 0.00 4.44
3342 4327 3.749088 TGCTCCCATTACAACTAACAACG 59.251 43.478 0.00 0.00 0.00 4.10
3343 4328 5.001232 TCTGCTCCCATTACAACTAACAAC 58.999 41.667 0.00 0.00 0.00 3.32
3344 4329 5.235850 TCTGCTCCCATTACAACTAACAA 57.764 39.130 0.00 0.00 0.00 2.83
3345 4330 4.901197 TCTGCTCCCATTACAACTAACA 57.099 40.909 0.00 0.00 0.00 2.41
3346 4331 5.001232 TGTTCTGCTCCCATTACAACTAAC 58.999 41.667 0.00 0.00 0.00 2.34
3347 4332 5.001232 GTGTTCTGCTCCCATTACAACTAA 58.999 41.667 0.00 0.00 0.00 2.24
3348 4333 4.286032 AGTGTTCTGCTCCCATTACAACTA 59.714 41.667 0.00 0.00 0.00 2.24
3349 4334 3.073062 AGTGTTCTGCTCCCATTACAACT 59.927 43.478 0.00 0.00 0.00 3.16
3350 4335 3.189287 CAGTGTTCTGCTCCCATTACAAC 59.811 47.826 0.00 0.00 34.79 3.32
3351 4336 3.181445 ACAGTGTTCTGCTCCCATTACAA 60.181 43.478 0.00 0.00 44.77 2.41
3352 4337 2.371841 ACAGTGTTCTGCTCCCATTACA 59.628 45.455 0.00 0.00 44.77 2.41
3353 4338 3.003480 GACAGTGTTCTGCTCCCATTAC 58.997 50.000 0.00 0.00 44.77 1.89
3354 4339 2.906389 AGACAGTGTTCTGCTCCCATTA 59.094 45.455 0.00 0.00 44.77 1.90
3355 4340 1.701847 AGACAGTGTTCTGCTCCCATT 59.298 47.619 0.00 0.00 44.77 3.16
3356 4341 1.277557 GAGACAGTGTTCTGCTCCCAT 59.722 52.381 0.00 0.00 44.77 4.00
3357 4342 0.681733 GAGACAGTGTTCTGCTCCCA 59.318 55.000 0.00 0.00 44.77 4.37
3358 4343 0.389166 CGAGACAGTGTTCTGCTCCC 60.389 60.000 0.00 0.00 44.77 4.30
3359 4344 0.315568 ACGAGACAGTGTTCTGCTCC 59.684 55.000 0.00 0.00 44.77 4.70
3360 4345 1.789464 CAACGAGACAGTGTTCTGCTC 59.211 52.381 0.00 0.00 44.77 4.26
3361 4346 1.858091 CAACGAGACAGTGTTCTGCT 58.142 50.000 0.00 0.00 44.77 4.24
3362 4347 0.233332 GCAACGAGACAGTGTTCTGC 59.767 55.000 0.00 0.00 44.77 4.26
3363 4348 1.524355 CAGCAACGAGACAGTGTTCTG 59.476 52.381 0.00 0.00 46.18 3.02
3364 4349 1.858091 CAGCAACGAGACAGTGTTCT 58.142 50.000 0.00 0.00 0.00 3.01
3365 4350 0.233332 GCAGCAACGAGACAGTGTTC 59.767 55.000 0.00 0.00 0.00 3.18
3366 4351 1.160329 GGCAGCAACGAGACAGTGTT 61.160 55.000 0.00 0.00 0.00 3.32
3367 4352 1.595382 GGCAGCAACGAGACAGTGT 60.595 57.895 0.00 0.00 0.00 3.55
3368 4353 1.301244 AGGCAGCAACGAGACAGTG 60.301 57.895 0.00 0.00 0.00 3.66
3369 4354 1.301244 CAGGCAGCAACGAGACAGT 60.301 57.895 0.00 0.00 0.00 3.55
3370 4355 0.882042 AACAGGCAGCAACGAGACAG 60.882 55.000 0.00 0.00 0.00 3.51
3371 4356 1.146041 AACAGGCAGCAACGAGACA 59.854 52.632 0.00 0.00 0.00 3.41
3372 4357 0.880278 TCAACAGGCAGCAACGAGAC 60.880 55.000 0.00 0.00 0.00 3.36
3373 4358 0.601046 CTCAACAGGCAGCAACGAGA 60.601 55.000 0.00 0.00 0.00 4.04
3374 4359 0.882042 ACTCAACAGGCAGCAACGAG 60.882 55.000 0.00 0.00 0.00 4.18
3375 4360 1.146041 ACTCAACAGGCAGCAACGA 59.854 52.632 0.00 0.00 0.00 3.85
3376 4361 1.159713 TCACTCAACAGGCAGCAACG 61.160 55.000 0.00 0.00 0.00 4.10
3377 4362 1.242076 ATCACTCAACAGGCAGCAAC 58.758 50.000 0.00 0.00 0.00 4.17
3378 4363 1.985473 AATCACTCAACAGGCAGCAA 58.015 45.000 0.00 0.00 0.00 3.91
3379 4364 2.426522 GTAATCACTCAACAGGCAGCA 58.573 47.619 0.00 0.00 0.00 4.41
3380 4365 1.394917 CGTAATCACTCAACAGGCAGC 59.605 52.381 0.00 0.00 0.00 5.25
3381 4366 2.002586 CCGTAATCACTCAACAGGCAG 58.997 52.381 0.00 0.00 0.00 4.85
3382 4367 1.346395 ACCGTAATCACTCAACAGGCA 59.654 47.619 0.00 0.00 0.00 4.75
3383 4368 2.094762 ACCGTAATCACTCAACAGGC 57.905 50.000 0.00 0.00 0.00 4.85
3384 4369 3.000727 GGAACCGTAATCACTCAACAGG 58.999 50.000 0.00 0.00 0.00 4.00
3385 4370 2.666508 CGGAACCGTAATCACTCAACAG 59.333 50.000 4.99 0.00 34.35 3.16
3386 4371 2.296752 TCGGAACCGTAATCACTCAACA 59.703 45.455 12.93 0.00 40.74 3.33
3387 4372 2.921754 CTCGGAACCGTAATCACTCAAC 59.078 50.000 12.93 0.00 40.74 3.18
3388 4373 2.673043 GCTCGGAACCGTAATCACTCAA 60.673 50.000 12.93 0.00 40.74 3.02
3389 4374 1.135199 GCTCGGAACCGTAATCACTCA 60.135 52.381 12.93 0.00 40.74 3.41
3390 4375 1.134560 AGCTCGGAACCGTAATCACTC 59.865 52.381 12.93 0.00 40.74 3.51
3391 4376 1.135083 CAGCTCGGAACCGTAATCACT 60.135 52.381 12.93 1.00 40.74 3.41
3392 4377 1.135199 TCAGCTCGGAACCGTAATCAC 60.135 52.381 12.93 0.00 40.74 3.06
3393 4378 1.135199 GTCAGCTCGGAACCGTAATCA 60.135 52.381 12.93 0.00 40.74 2.57
3394 4379 1.557651 GTCAGCTCGGAACCGTAATC 58.442 55.000 12.93 1.83 40.74 1.75
3395 4380 0.175073 GGTCAGCTCGGAACCGTAAT 59.825 55.000 12.93 0.00 40.74 1.89
3396 4381 1.180456 TGGTCAGCTCGGAACCGTAA 61.180 55.000 12.93 0.00 40.74 3.18
3397 4382 1.180456 TTGGTCAGCTCGGAACCGTA 61.180 55.000 12.93 0.00 40.74 4.02
3398 4383 2.035237 TTTGGTCAGCTCGGAACCGT 62.035 55.000 12.93 0.00 40.74 4.83
3399 4384 0.882927 TTTTGGTCAGCTCGGAACCG 60.883 55.000 6.94 6.94 41.35 4.44
3400 4385 1.534729 ATTTTGGTCAGCTCGGAACC 58.465 50.000 0.00 0.00 0.00 3.62
3401 4386 2.552315 TGAATTTTGGTCAGCTCGGAAC 59.448 45.455 0.00 0.00 0.00 3.62
3402 4387 2.552315 GTGAATTTTGGTCAGCTCGGAA 59.448 45.455 0.00 0.00 0.00 4.30
3403 4388 2.151202 GTGAATTTTGGTCAGCTCGGA 58.849 47.619 0.00 0.00 0.00 4.55
3404 4389 1.879380 TGTGAATTTTGGTCAGCTCGG 59.121 47.619 0.00 0.00 0.00 4.63
3405 4390 2.666619 GCTGTGAATTTTGGTCAGCTCG 60.667 50.000 7.98 0.00 45.14 5.03
3406 4391 2.938869 GCTGTGAATTTTGGTCAGCTC 58.061 47.619 7.98 0.00 45.14 4.09
3409 4394 3.996150 AGTGCTGTGAATTTTGGTCAG 57.004 42.857 0.00 0.00 0.00 3.51
3410 4395 4.713553 TCTAGTGCTGTGAATTTTGGTCA 58.286 39.130 0.00 0.00 0.00 4.02
3411 4396 5.886960 ATCTAGTGCTGTGAATTTTGGTC 57.113 39.130 0.00 0.00 0.00 4.02
3412 4397 6.714810 TGTAATCTAGTGCTGTGAATTTTGGT 59.285 34.615 0.00 0.00 0.00 3.67
3413 4398 7.144722 TGTAATCTAGTGCTGTGAATTTTGG 57.855 36.000 0.00 0.00 0.00 3.28
3414 4399 7.637519 CGATGTAATCTAGTGCTGTGAATTTTG 59.362 37.037 0.00 0.00 42.58 2.44
3415 4400 7.334421 ACGATGTAATCTAGTGCTGTGAATTTT 59.666 33.333 0.00 0.00 42.58 1.82
3416 4401 6.818644 ACGATGTAATCTAGTGCTGTGAATTT 59.181 34.615 0.00 0.00 42.58 1.82
3417 4402 6.341316 ACGATGTAATCTAGTGCTGTGAATT 58.659 36.000 0.00 0.00 42.58 2.17
3418 4403 5.907207 ACGATGTAATCTAGTGCTGTGAAT 58.093 37.500 0.00 0.00 42.58 2.57
3419 4404 5.324784 ACGATGTAATCTAGTGCTGTGAA 57.675 39.130 0.00 0.00 42.58 3.18
3420 4405 4.983671 ACGATGTAATCTAGTGCTGTGA 57.016 40.909 0.00 0.00 42.58 3.58
3421 4406 5.807520 AGAAACGATGTAATCTAGTGCTGTG 59.192 40.000 0.00 0.00 42.58 3.66
3422 4407 5.807520 CAGAAACGATGTAATCTAGTGCTGT 59.192 40.000 0.00 0.00 42.58 4.40
3423 4408 5.233050 CCAGAAACGATGTAATCTAGTGCTG 59.767 44.000 0.00 0.00 42.58 4.41
3424 4409 5.352284 CCAGAAACGATGTAATCTAGTGCT 58.648 41.667 0.00 0.00 42.58 4.40
3425 4410 4.025647 GCCAGAAACGATGTAATCTAGTGC 60.026 45.833 0.00 0.00 42.58 4.40
3426 4411 5.109210 TGCCAGAAACGATGTAATCTAGTG 58.891 41.667 0.00 0.00 42.58 2.74
3427 4412 5.105310 ACTGCCAGAAACGATGTAATCTAGT 60.105 40.000 0.00 0.00 42.58 2.57
3428 4413 5.352284 ACTGCCAGAAACGATGTAATCTAG 58.648 41.667 0.00 0.00 42.58 2.43
3429 4414 5.339008 ACTGCCAGAAACGATGTAATCTA 57.661 39.130 0.00 0.00 42.58 1.98
3430 4415 4.207891 ACTGCCAGAAACGATGTAATCT 57.792 40.909 0.00 0.00 42.58 2.40
3431 4416 4.946784 AACTGCCAGAAACGATGTAATC 57.053 40.909 0.00 0.00 40.89 1.75
3432 4417 5.003804 AGAAACTGCCAGAAACGATGTAAT 58.996 37.500 0.00 0.00 0.00 1.89
3433 4418 4.213270 CAGAAACTGCCAGAAACGATGTAA 59.787 41.667 0.00 0.00 0.00 2.41
3434 4419 3.745975 CAGAAACTGCCAGAAACGATGTA 59.254 43.478 0.00 0.00 0.00 2.29
3435 4420 2.549754 CAGAAACTGCCAGAAACGATGT 59.450 45.455 0.00 0.00 0.00 3.06
3436 4421 2.807967 TCAGAAACTGCCAGAAACGATG 59.192 45.455 0.00 0.00 0.00 3.84
3437 4422 3.126001 TCAGAAACTGCCAGAAACGAT 57.874 42.857 0.00 0.00 0.00 3.73
3438 4423 2.613026 TCAGAAACTGCCAGAAACGA 57.387 45.000 0.00 0.00 0.00 3.85
3439 4424 3.904136 ATTCAGAAACTGCCAGAAACG 57.096 42.857 0.00 0.00 0.00 3.60
3440 4425 5.470098 TCAGTATTCAGAAACTGCCAGAAAC 59.530 40.000 15.37 0.00 42.31 2.78
3441 4426 5.620206 TCAGTATTCAGAAACTGCCAGAAA 58.380 37.500 15.37 1.91 42.31 2.52
3442 4427 5.227569 TCAGTATTCAGAAACTGCCAGAA 57.772 39.130 15.37 0.00 42.31 3.02
3443 4428 4.890158 TCAGTATTCAGAAACTGCCAGA 57.110 40.909 15.37 2.65 42.31 3.86
3444 4429 4.999950 ACTTCAGTATTCAGAAACTGCCAG 59.000 41.667 15.37 14.96 42.31 4.85
3445 4430 4.973168 ACTTCAGTATTCAGAAACTGCCA 58.027 39.130 15.37 7.92 42.31 4.92
3446 4431 4.997395 TGACTTCAGTATTCAGAAACTGCC 59.003 41.667 15.37 8.70 42.31 4.85
3447 4432 5.466728 TGTGACTTCAGTATTCAGAAACTGC 59.533 40.000 15.37 6.99 42.31 4.40
3448 4433 6.703607 ACTGTGACTTCAGTATTCAGAAACTG 59.296 38.462 14.57 14.57 45.31 3.16
3449 4434 6.821388 ACTGTGACTTCAGTATTCAGAAACT 58.179 36.000 10.50 0.00 45.31 2.66
3450 4435 6.926272 AGACTGTGACTTCAGTATTCAGAAAC 59.074 38.462 10.50 0.00 46.81 2.78
3451 4436 7.055667 AGACTGTGACTTCAGTATTCAGAAA 57.944 36.000 10.50 0.00 46.81 2.52
3452 4437 6.656632 AGACTGTGACTTCAGTATTCAGAA 57.343 37.500 10.50 0.00 46.81 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.