Multiple sequence alignment - TraesCS3B01G047900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G047900 chr3B 100.000 6009 0 0 1 6009 24245831 24251839 0.000000e+00 11097.0
1 TraesCS3B01G047900 chr3B 86.636 217 28 1 575 790 652747044 652746828 7.780000e-59 239.0
2 TraesCS3B01G047900 chr3B 86.099 223 23 3 570 790 800740988 800741204 3.620000e-57 233.0
3 TraesCS3B01G047900 chr3B 85.650 223 24 3 570 790 800692932 800693148 1.680000e-55 228.0
4 TraesCS3B01G047900 chr3B 85.650 223 24 3 570 790 800736520 800736736 1.680000e-55 228.0
5 TraesCS3B01G047900 chr3B 85.455 220 25 3 572 790 800738754 800738967 7.840000e-54 222.0
6 TraesCS3B01G047900 chr3A 93.327 3282 138 28 2756 6009 19907300 19904072 0.000000e+00 4772.0
7 TraesCS3B01G047900 chr3A 91.195 318 17 4 1271 1587 19908623 19908316 7.200000e-114 422.0
8 TraesCS3B01G047900 chr3A 93.785 177 9 1 1576 1752 19908295 19908121 1.280000e-66 265.0
9 TraesCS3B01G047900 chr3A 77.596 183 36 4 222 400 742378058 742377877 8.240000e-19 106.0
10 TraesCS3B01G047900 chr3D 94.553 3011 113 20 3012 6009 16877182 16880154 0.000000e+00 4604.0
11 TraesCS3B01G047900 chr3D 91.311 656 34 6 937 1581 16875323 16875966 0.000000e+00 874.0
12 TraesCS3B01G047900 chr3D 96.296 216 5 3 2756 2969 16876979 16877193 9.580000e-93 351.0
13 TraesCS3B01G047900 chr3D 89.071 183 16 2 1572 1752 16875989 16876169 2.180000e-54 224.0
14 TraesCS3B01G047900 chr3D 90.000 60 5 1 515 573 611668774 611668833 6.460000e-10 76.8
15 TraesCS3B01G047900 chr2A 99.599 998 4 0 1751 2748 721592470 721593467 0.000000e+00 1821.0
16 TraesCS3B01G047900 chr2A 99.196 995 5 2 1753 2746 80181844 80182836 0.000000e+00 1790.0
17 TraesCS3B01G047900 chr2A 99.141 815 5 1 1936 2748 714699764 714700578 0.000000e+00 1465.0
18 TraesCS3B01G047900 chr2A 99.351 154 1 0 1751 1904 714699614 714699767 4.590000e-71 279.0
19 TraesCS3B01G047900 chr2A 85.246 122 14 2 266 387 423209502 423209619 8.180000e-24 122.0
20 TraesCS3B01G047900 chr2A 78.142 183 34 5 222 400 29800966 29800786 1.770000e-20 111.0
21 TraesCS3B01G047900 chr2A 97.917 48 1 0 2701 2748 38345117 38345164 3.860000e-12 84.2
22 TraesCS3B01G047900 chr2A 87.719 57 5 2 350 406 625989864 625989918 1.400000e-06 65.8
23 TraesCS3B01G047900 chr6B 98.298 999 14 2 1750 2746 557537250 557538247 0.000000e+00 1748.0
24 TraesCS3B01G047900 chr6B 88.889 216 24 0 575 790 56963994 56963779 3.570000e-67 267.0
25 TraesCS3B01G047900 chr1A 99.142 816 5 1 1936 2749 577374187 577373372 0.000000e+00 1467.0
26 TraesCS3B01G047900 chr1A 99.351 154 1 0 1751 1904 577374337 577374184 4.590000e-71 279.0
27 TraesCS3B01G047900 chr1A 83.621 116 14 3 200 314 146636294 146636405 2.960000e-18 104.0
28 TraesCS3B01G047900 chr6A 99.139 813 5 1 1936 2746 18511572 18512384 0.000000e+00 1461.0
29 TraesCS3B01G047900 chr6A 99.342 152 1 0 1753 1904 18511424 18511575 5.930000e-70 276.0
30 TraesCS3B01G047900 chr6A 80.905 199 33 5 201 397 101544530 101544725 1.040000e-32 152.0
31 TraesCS3B01G047900 chr6A 85.246 61 9 0 516 576 602997167 602997227 5.030000e-06 63.9
32 TraesCS3B01G047900 chr7B 88.390 801 58 18 1948 2746 696581130 696581897 0.000000e+00 931.0
33 TraesCS3B01G047900 chr7B 90.833 120 10 1 1753 1872 696581014 696581132 6.230000e-35 159.0
34 TraesCS3B01G047900 chr7B 73.973 219 32 15 111 309 512703898 512704111 1.400000e-06 65.8
35 TraesCS3B01G047900 chr7B 94.872 39 2 0 111 149 663634397 663634359 1.810000e-05 62.1
36 TraesCS3B01G047900 chr4D 89.401 217 21 2 575 790 467189910 467189695 7.670000e-69 272.0
37 TraesCS3B01G047900 chr4D 100.000 32 0 0 112 143 426620063 426620094 6.500000e-05 60.2
38 TraesCS3B01G047900 chr1D 88.837 215 23 1 576 790 442044780 442044993 4.620000e-66 263.0
39 TraesCS3B01G047900 chr1D 90.000 40 4 0 110 149 66984409 66984370 1.100000e-02 52.8
40 TraesCS3B01G047900 chr2B 93.789 161 9 1 2589 2748 35382700 35382540 2.160000e-59 241.0
41 TraesCS3B01G047900 chr2B 89.583 96 6 3 2472 2567 35382787 35382696 1.060000e-22 119.0
42 TraesCS3B01G047900 chr2B 97.222 36 1 0 538 573 762364422 762364387 1.810000e-05 62.1
43 TraesCS3B01G047900 chr2B 90.909 44 4 0 106 149 263825904 263825947 6.500000e-05 60.2
44 TraesCS3B01G047900 chr2D 85.909 220 27 1 575 790 31977587 31977368 1.300000e-56 231.0
45 TraesCS3B01G047900 chr2D 90.164 61 6 0 516 576 470134851 470134791 4.990000e-11 80.5
46 TraesCS3B01G047900 chr2D 97.436 39 1 0 110 148 127992276 127992314 3.890000e-07 67.6
47 TraesCS3B01G047900 chr7D 79.235 183 33 4 222 400 431340158 431339977 8.180000e-24 122.0
48 TraesCS3B01G047900 chr7A 94.595 74 4 0 2457 2530 31068891 31068964 1.370000e-21 115.0
49 TraesCS3B01G047900 chr4B 76.500 200 36 10 202 397 98694076 98694268 1.380000e-16 99.0
50 TraesCS3B01G047900 chr5B 77.717 184 23 8 198 377 375745331 375745500 4.960000e-16 97.1
51 TraesCS3B01G047900 chr5B 82.979 94 14 2 497 588 128343541 128343448 3.860000e-12 84.2
52 TraesCS3B01G047900 chr5B 92.500 40 3 0 275 314 707064302 707064341 2.340000e-04 58.4
53 TraesCS3B01G047900 chr5D 88.710 62 6 1 516 576 559957305 559957244 2.320000e-09 75.0
54 TraesCS3B01G047900 chr6D 86.885 61 8 0 516 576 456371266 456371326 1.080000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G047900 chr3B 24245831 24251839 6008 False 11097.000000 11097 100.000000 1 6009 1 chr3B.!!$F1 6008
1 TraesCS3B01G047900 chr3B 800736520 800741204 4684 False 227.666667 233 85.734667 570 790 3 chr3B.!!$F3 220
2 TraesCS3B01G047900 chr3A 19904072 19908623 4551 True 1819.666667 4772 92.769000 1271 6009 3 chr3A.!!$R2 4738
3 TraesCS3B01G047900 chr3D 16875323 16880154 4831 False 1513.250000 4604 92.807750 937 6009 4 chr3D.!!$F2 5072
4 TraesCS3B01G047900 chr2A 721592470 721593467 997 False 1821.000000 1821 99.599000 1751 2748 1 chr2A.!!$F5 997
5 TraesCS3B01G047900 chr2A 80181844 80182836 992 False 1790.000000 1790 99.196000 1753 2746 1 chr2A.!!$F2 993
6 TraesCS3B01G047900 chr2A 714699614 714700578 964 False 872.000000 1465 99.246000 1751 2748 2 chr2A.!!$F6 997
7 TraesCS3B01G047900 chr6B 557537250 557538247 997 False 1748.000000 1748 98.298000 1750 2746 1 chr6B.!!$F1 996
8 TraesCS3B01G047900 chr1A 577373372 577374337 965 True 873.000000 1467 99.246500 1751 2749 2 chr1A.!!$R1 998
9 TraesCS3B01G047900 chr6A 18511424 18512384 960 False 868.500000 1461 99.240500 1753 2746 2 chr6A.!!$F3 993
10 TraesCS3B01G047900 chr7B 696581014 696581897 883 False 545.000000 931 89.611500 1753 2746 2 chr7B.!!$F2 993

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 468 0.029300 TCGCAGAAGCAAAACTGTGC 59.971 50.0 0.00 0.00 45.28 4.57 F
512 513 0.111061 TTGAGAGCATGCCACTTGGT 59.889 50.0 15.66 0.00 37.57 3.67 F
818 819 0.169672 CGGTGACATCCGTCGTTAGT 59.830 55.0 7.93 0.00 45.80 2.24 F
1455 1769 0.106819 GGTACCCCGCTCACTCTCTA 60.107 60.0 0.00 0.00 0.00 2.43 F
2235 2764 0.105964 TATCCGGCAAGATCCAACCG 59.894 55.0 10.16 10.16 45.21 4.44 F
3571 4453 0.179059 TGCAGTCACATGGAACGTGT 60.179 50.0 0.00 0.00 35.79 4.49 F
3837 4720 0.252881 TCAGGAGGCCAGGATTGAGT 60.253 55.0 5.01 0.00 0.00 3.41 F
4617 6286 0.250124 TTGAGGTCATGGCGAACGTT 60.250 50.0 0.00 0.00 35.97 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1321 1631 0.732538 CAGACGCACGCAGATACACA 60.733 55.000 0.00 0.0 0.00 3.72 R
1331 1641 1.341369 TAATCACACGCAGACGCACG 61.341 55.000 0.00 0.0 45.53 5.34 R
2235 2764 1.676529 TCGATGAACACGGAGGAGATC 59.323 52.381 0.00 0.0 0.00 2.75 R
3189 4071 1.737793 GACAGCGGGTATTCAACAAGG 59.262 52.381 0.00 0.0 0.00 3.61 R
3811 4693 0.750911 CCTGGCCTCCTGAGCAAATC 60.751 60.000 3.32 0.0 0.00 2.17 R
4602 6271 1.149987 TACAAACGTTCGCCATGACC 58.850 50.000 0.00 0.0 0.00 4.02 R
4653 6322 2.492881 CAAATGTGAAGTATGGCCAGCA 59.507 45.455 13.05 0.0 0.00 4.41 R
5955 8854 3.039011 ACTATTATCGCCACCTTCCTGT 58.961 45.455 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.088905 TCACGTTGAGATCTTTAAACTAGACC 58.911 38.462 0.00 0.00 0.00 3.85
37 38 6.033619 CACGTTGAGATCTTTAAACTAGACCG 59.966 42.308 0.00 0.00 0.00 4.79
38 39 5.004535 CGTTGAGATCTTTAAACTAGACCGC 59.995 44.000 0.00 0.00 0.00 5.68
39 40 4.669318 TGAGATCTTTAAACTAGACCGCG 58.331 43.478 0.00 0.00 0.00 6.46
40 41 4.157289 TGAGATCTTTAAACTAGACCGCGT 59.843 41.667 4.92 0.00 0.00 6.01
41 42 4.421948 AGATCTTTAAACTAGACCGCGTG 58.578 43.478 4.92 0.00 0.00 5.34
42 43 3.648339 TCTTTAAACTAGACCGCGTGT 57.352 42.857 4.92 1.93 0.00 4.49
43 44 3.981211 TCTTTAAACTAGACCGCGTGTT 58.019 40.909 4.92 0.00 0.00 3.32
44 45 3.737266 TCTTTAAACTAGACCGCGTGTTG 59.263 43.478 4.92 0.00 0.00 3.33
45 46 3.367992 TTAAACTAGACCGCGTGTTGA 57.632 42.857 4.92 0.00 0.00 3.18
46 47 1.494824 AAACTAGACCGCGTGTTGAC 58.505 50.000 4.92 0.00 0.00 3.18
47 48 0.386476 AACTAGACCGCGTGTTGACA 59.614 50.000 4.92 0.00 0.00 3.58
48 49 0.386476 ACTAGACCGCGTGTTGACAA 59.614 50.000 4.92 0.00 0.00 3.18
49 50 1.202440 ACTAGACCGCGTGTTGACAAA 60.202 47.619 4.92 0.00 0.00 2.83
50 51 2.066262 CTAGACCGCGTGTTGACAAAT 58.934 47.619 4.92 0.00 0.00 2.32
51 52 1.305201 AGACCGCGTGTTGACAAATT 58.695 45.000 4.92 0.00 0.00 1.82
52 53 1.673920 AGACCGCGTGTTGACAAATTT 59.326 42.857 4.92 0.00 0.00 1.82
53 54 2.098443 AGACCGCGTGTTGACAAATTTT 59.902 40.909 4.92 0.00 0.00 1.82
54 55 2.189342 ACCGCGTGTTGACAAATTTTG 58.811 42.857 4.92 7.59 0.00 2.44
55 56 2.159366 ACCGCGTGTTGACAAATTTTGA 60.159 40.909 15.81 0.00 0.00 2.69
56 57 3.049206 CCGCGTGTTGACAAATTTTGAT 58.951 40.909 15.81 0.50 0.00 2.57
57 58 3.121396 CCGCGTGTTGACAAATTTTGATG 60.121 43.478 15.81 0.10 0.00 3.07
58 59 3.728221 CGCGTGTTGACAAATTTTGATGA 59.272 39.130 15.81 0.00 0.00 2.92
59 60 4.205996 CGCGTGTTGACAAATTTTGATGAA 59.794 37.500 15.81 2.83 0.00 2.57
60 61 5.107913 CGCGTGTTGACAAATTTTGATGAAT 60.108 36.000 15.81 0.00 0.00 2.57
61 62 6.291385 GCGTGTTGACAAATTTTGATGAATC 58.709 36.000 15.81 3.33 0.00 2.52
62 63 6.144402 GCGTGTTGACAAATTTTGATGAATCT 59.856 34.615 15.81 0.00 0.00 2.40
63 64 7.306749 GCGTGTTGACAAATTTTGATGAATCTT 60.307 33.333 15.81 0.00 0.00 2.40
64 65 8.542132 CGTGTTGACAAATTTTGATGAATCTTT 58.458 29.630 15.81 0.00 0.00 2.52
95 96 5.488262 AAAAAGCATATTGGGAGCACTTT 57.512 34.783 0.00 0.00 0.00 2.66
96 97 5.488262 AAAAGCATATTGGGAGCACTTTT 57.512 34.783 0.00 0.00 32.60 2.27
97 98 5.488262 AAAGCATATTGGGAGCACTTTTT 57.512 34.783 0.00 0.00 0.00 1.94
118 119 7.538303 TTTTTCTTTTTCAAATGTGCCTCTC 57.462 32.000 0.00 0.00 0.00 3.20
119 120 4.488126 TCTTTTTCAAATGTGCCTCTCG 57.512 40.909 0.00 0.00 0.00 4.04
120 121 2.704725 TTTTCAAATGTGCCTCTCGC 57.295 45.000 0.00 0.00 38.31 5.03
121 122 0.516877 TTTCAAATGTGCCTCTCGCG 59.483 50.000 0.00 0.00 42.08 5.87
122 123 1.298157 TTCAAATGTGCCTCTCGCGG 61.298 55.000 6.13 0.00 42.08 6.46
123 124 1.741401 CAAATGTGCCTCTCGCGGA 60.741 57.895 6.13 1.01 42.08 5.54
124 125 1.003839 AAATGTGCCTCTCGCGGAA 60.004 52.632 6.13 0.00 42.08 4.30
125 126 1.021390 AAATGTGCCTCTCGCGGAAG 61.021 55.000 6.13 3.71 42.08 3.46
145 146 3.122937 GCAAAACTATGCTTCTCACGG 57.877 47.619 0.00 0.00 43.06 4.94
146 147 2.742053 GCAAAACTATGCTTCTCACGGA 59.258 45.455 0.00 0.00 43.06 4.69
147 148 3.188460 GCAAAACTATGCTTCTCACGGAA 59.812 43.478 0.00 0.00 43.06 4.30
175 176 3.926821 TTTTCCGGTTTTGATAGGCAC 57.073 42.857 0.00 0.00 0.00 5.01
176 177 1.444836 TTCCGGTTTTGATAGGCACG 58.555 50.000 0.00 0.00 0.00 5.34
177 178 0.391927 TCCGGTTTTGATAGGCACGG 60.392 55.000 0.00 0.00 41.06 4.94
178 179 1.427819 CGGTTTTGATAGGCACGGC 59.572 57.895 0.00 0.00 0.00 5.68
190 191 3.029735 CACGGCCGTGCTTTTTGC 61.030 61.111 42.21 0.00 39.39 3.68
243 244 3.963383 TTTTTCTGTTTCCGAGAGCAC 57.037 42.857 0.00 0.00 0.00 4.40
244 245 1.497991 TTTCTGTTTCCGAGAGCACG 58.502 50.000 0.00 0.00 0.00 5.34
258 259 4.088421 CACGGTCGTGCCTATCAC 57.912 61.111 10.59 0.00 39.39 3.06
282 283 2.253392 GTACAACCGTACCTCTCGTG 57.747 55.000 0.00 0.00 41.92 4.35
283 284 1.806542 GTACAACCGTACCTCTCGTGA 59.193 52.381 0.00 0.00 41.92 4.35
284 285 1.321474 ACAACCGTACCTCTCGTGAA 58.679 50.000 0.00 0.00 0.00 3.18
285 286 1.682854 ACAACCGTACCTCTCGTGAAA 59.317 47.619 0.00 0.00 0.00 2.69
286 287 2.288030 ACAACCGTACCTCTCGTGAAAG 60.288 50.000 0.00 0.00 0.00 2.62
287 288 0.243095 ACCGTACCTCTCGTGAAAGC 59.757 55.000 0.00 0.00 0.00 3.51
288 289 0.242825 CCGTACCTCTCGTGAAAGCA 59.757 55.000 0.00 0.00 0.00 3.91
289 290 1.336517 CCGTACCTCTCGTGAAAGCAA 60.337 52.381 0.00 0.00 0.00 3.91
290 291 2.400399 CGTACCTCTCGTGAAAGCAAA 58.600 47.619 0.00 0.00 0.00 3.68
291 292 2.798283 CGTACCTCTCGTGAAAGCAAAA 59.202 45.455 0.00 0.00 0.00 2.44
292 293 3.362693 CGTACCTCTCGTGAAAGCAAAAC 60.363 47.826 0.00 0.00 0.00 2.43
293 294 1.597663 ACCTCTCGTGAAAGCAAAACG 59.402 47.619 0.00 0.00 38.64 3.60
294 295 1.069906 CCTCTCGTGAAAGCAAAACGG 60.070 52.381 0.00 0.00 37.87 4.44
295 296 1.597663 CTCTCGTGAAAGCAAAACGGT 59.402 47.619 0.00 0.00 37.87 4.83
296 297 1.329292 TCTCGTGAAAGCAAAACGGTG 59.671 47.619 0.00 0.00 37.87 4.94
297 298 0.248296 TCGTGAAAGCAAAACGGTGC 60.248 50.000 0.18 0.18 45.28 5.01
298 299 1.206115 CGTGAAAGCAAAACGGTGCC 61.206 55.000 4.59 0.00 46.14 5.01
299 300 0.102300 GTGAAAGCAAAACGGTGCCT 59.898 50.000 4.59 0.00 46.14 4.75
300 301 0.383949 TGAAAGCAAAACGGTGCCTC 59.616 50.000 4.59 3.45 46.14 4.70
301 302 0.668535 GAAAGCAAAACGGTGCCTCT 59.331 50.000 4.59 0.00 46.14 3.69
302 303 0.668535 AAAGCAAAACGGTGCCTCTC 59.331 50.000 4.59 0.00 46.14 3.20
303 304 0.465460 AAGCAAAACGGTGCCTCTCA 60.465 50.000 4.59 0.00 46.14 3.27
304 305 1.166531 AGCAAAACGGTGCCTCTCAC 61.167 55.000 4.59 0.00 46.14 3.51
305 306 1.569493 CAAAACGGTGCCTCTCACG 59.431 57.895 0.00 0.00 46.56 4.35
306 307 0.878523 CAAAACGGTGCCTCTCACGA 60.879 55.000 0.00 0.00 46.56 4.35
307 308 0.179067 AAAACGGTGCCTCTCACGAA 60.179 50.000 0.00 0.00 46.56 3.85
308 309 0.179067 AAACGGTGCCTCTCACGAAA 60.179 50.000 0.00 0.00 46.56 3.46
309 310 0.600255 AACGGTGCCTCTCACGAAAG 60.600 55.000 0.00 0.00 46.56 2.62
310 311 1.738099 CGGTGCCTCTCACGAAAGG 60.738 63.158 0.00 0.00 46.56 3.11
311 312 1.671742 GGTGCCTCTCACGAAAGGA 59.328 57.895 0.00 0.00 46.56 3.36
312 313 0.034896 GGTGCCTCTCACGAAAGGAA 59.965 55.000 0.00 0.00 46.56 3.36
313 314 1.542547 GGTGCCTCTCACGAAAGGAAA 60.543 52.381 0.00 0.00 46.56 3.13
314 315 1.801178 GTGCCTCTCACGAAAGGAAAG 59.199 52.381 0.00 0.00 35.76 2.62
315 316 1.691976 TGCCTCTCACGAAAGGAAAGA 59.308 47.619 0.00 0.00 34.35 2.52
316 317 2.104111 TGCCTCTCACGAAAGGAAAGAA 59.896 45.455 0.00 0.00 34.35 2.52
317 318 3.139077 GCCTCTCACGAAAGGAAAGAAA 58.861 45.455 0.00 0.00 34.35 2.52
318 319 3.564225 GCCTCTCACGAAAGGAAAGAAAA 59.436 43.478 0.00 0.00 34.35 2.29
319 320 4.319839 GCCTCTCACGAAAGGAAAGAAAAG 60.320 45.833 0.00 0.00 34.35 2.27
320 321 5.057149 CCTCTCACGAAAGGAAAGAAAAGA 58.943 41.667 0.00 0.00 34.35 2.52
321 322 5.527582 CCTCTCACGAAAGGAAAGAAAAGAA 59.472 40.000 0.00 0.00 34.35 2.52
322 323 6.038271 CCTCTCACGAAAGGAAAGAAAAGAAA 59.962 38.462 0.00 0.00 34.35 2.52
323 324 7.385778 TCTCACGAAAGGAAAGAAAAGAAAA 57.614 32.000 0.00 0.00 0.00 2.29
324 325 7.822658 TCTCACGAAAGGAAAGAAAAGAAAAA 58.177 30.769 0.00 0.00 0.00 1.94
325 326 8.466798 TCTCACGAAAGGAAAGAAAAGAAAAAT 58.533 29.630 0.00 0.00 0.00 1.82
326 327 8.996024 TCACGAAAGGAAAGAAAAGAAAAATT 57.004 26.923 0.00 0.00 0.00 1.82
327 328 8.868916 TCACGAAAGGAAAGAAAAGAAAAATTG 58.131 29.630 0.00 0.00 0.00 2.32
328 329 8.655970 CACGAAAGGAAAGAAAAGAAAAATTGT 58.344 29.630 0.00 0.00 0.00 2.71
329 330 9.214957 ACGAAAGGAAAGAAAAGAAAAATTGTT 57.785 25.926 0.00 0.00 0.00 2.83
357 358 5.481200 TTCGTTTCTGAGAGGTATAGTCG 57.519 43.478 0.00 0.00 0.00 4.18
358 359 4.511527 TCGTTTCTGAGAGGTATAGTCGT 58.488 43.478 0.00 0.00 0.00 4.34
359 360 4.331992 TCGTTTCTGAGAGGTATAGTCGTG 59.668 45.833 0.00 0.00 0.00 4.35
360 361 4.352887 GTTTCTGAGAGGTATAGTCGTGC 58.647 47.826 0.00 0.00 0.00 5.34
361 362 2.573369 TCTGAGAGGTATAGTCGTGCC 58.427 52.381 0.00 0.00 0.00 5.01
362 363 2.172930 TCTGAGAGGTATAGTCGTGCCT 59.827 50.000 0.00 0.00 36.87 4.75
366 367 2.573369 GAGGTATAGTCGTGCCTCTCA 58.427 52.381 4.12 0.00 44.66 3.27
367 368 2.291190 GAGGTATAGTCGTGCCTCTCAC 59.709 54.545 4.12 0.00 44.66 3.51
374 375 2.343758 GTGCCTCTCACGGAAGCA 59.656 61.111 0.00 0.00 38.87 3.91
375 376 1.301716 GTGCCTCTCACGGAAGCAA 60.302 57.895 0.00 0.00 42.24 3.91
376 377 0.884704 GTGCCTCTCACGGAAGCAAA 60.885 55.000 0.00 0.00 42.24 3.68
377 378 0.179032 TGCCTCTCACGGAAGCAAAA 60.179 50.000 0.00 0.00 38.32 2.44
378 379 0.951558 GCCTCTCACGGAAGCAAAAA 59.048 50.000 0.00 0.00 32.03 1.94
379 380 1.541588 GCCTCTCACGGAAGCAAAAAT 59.458 47.619 0.00 0.00 32.03 1.82
380 381 2.414691 GCCTCTCACGGAAGCAAAAATC 60.415 50.000 0.00 0.00 32.03 2.17
381 382 2.159653 CCTCTCACGGAAGCAAAAATCG 60.160 50.000 0.00 0.00 0.00 3.34
382 383 2.480419 CTCTCACGGAAGCAAAAATCGT 59.520 45.455 0.00 0.00 34.19 3.73
384 385 1.052287 CACGGAAGCAAAAATCGTGC 58.948 50.000 0.00 0.00 43.18 5.34
385 386 0.039527 ACGGAAGCAAAAATCGTGCC 60.040 50.000 0.00 0.00 43.27 5.01
386 387 0.240945 CGGAAGCAAAAATCGTGCCT 59.759 50.000 0.00 0.00 43.27 4.75
387 388 1.335872 CGGAAGCAAAAATCGTGCCTT 60.336 47.619 0.00 0.00 43.27 4.35
388 389 2.754472 GGAAGCAAAAATCGTGCCTTT 58.246 42.857 0.00 0.00 43.27 3.11
389 390 2.731451 GGAAGCAAAAATCGTGCCTTTC 59.269 45.455 0.00 0.00 43.27 2.62
390 391 2.050477 AGCAAAAATCGTGCCTTTCG 57.950 45.000 0.00 0.00 43.27 3.46
391 392 0.434628 GCAAAAATCGTGCCTTTCGC 59.565 50.000 0.00 0.00 35.91 4.70
400 401 2.227754 GTGCCTTTCGCGAAAGTAAG 57.772 50.000 42.71 33.18 44.66 2.34
401 402 1.796459 GTGCCTTTCGCGAAAGTAAGA 59.204 47.619 42.71 27.77 44.66 2.10
402 403 2.222445 GTGCCTTTCGCGAAAGTAAGAA 59.778 45.455 42.71 28.47 44.66 2.52
403 404 2.873472 TGCCTTTCGCGAAAGTAAGAAA 59.127 40.909 42.71 26.07 44.66 2.52
404 405 3.312973 TGCCTTTCGCGAAAGTAAGAAAA 59.687 39.130 42.71 24.99 44.66 2.29
405 406 4.201930 TGCCTTTCGCGAAAGTAAGAAAAA 60.202 37.500 42.71 24.19 44.66 1.94
406 407 4.915667 GCCTTTCGCGAAAGTAAGAAAAAT 59.084 37.500 42.71 0.00 44.66 1.82
407 408 5.164187 GCCTTTCGCGAAAGTAAGAAAAATG 60.164 40.000 42.71 29.86 44.66 2.32
408 409 5.912955 CCTTTCGCGAAAGTAAGAAAAATGT 59.087 36.000 42.71 0.00 44.66 2.71
409 410 6.129457 CCTTTCGCGAAAGTAAGAAAAATGTG 60.129 38.462 42.71 26.81 44.66 3.21
410 411 5.412526 TCGCGAAAGTAAGAAAAATGTGT 57.587 34.783 6.20 0.00 0.00 3.72
411 412 5.812652 TCGCGAAAGTAAGAAAAATGTGTT 58.187 33.333 6.20 0.00 0.00 3.32
412 413 6.259638 TCGCGAAAGTAAGAAAAATGTGTTT 58.740 32.000 6.20 0.00 0.00 2.83
413 414 6.748198 TCGCGAAAGTAAGAAAAATGTGTTTT 59.252 30.769 6.20 0.00 39.15 2.43
414 415 6.833880 CGCGAAAGTAAGAAAAATGTGTTTTG 59.166 34.615 0.00 0.00 37.59 2.44
415 416 7.462200 CGCGAAAGTAAGAAAAATGTGTTTTGT 60.462 33.333 0.00 0.00 37.59 2.83
416 417 8.166066 GCGAAAGTAAGAAAAATGTGTTTTGTT 58.834 29.630 0.00 0.54 37.59 2.83
444 445 2.811317 CGAGAGGCACGACCAAGC 60.811 66.667 0.00 0.00 43.14 4.01
450 451 3.414700 GCACGACCAAGCCACTCG 61.415 66.667 0.00 0.00 0.00 4.18
451 452 3.414700 CACGACCAAGCCACTCGC 61.415 66.667 0.00 0.00 37.98 5.03
452 453 3.923864 ACGACCAAGCCACTCGCA 61.924 61.111 0.00 0.00 41.38 5.10
453 454 3.114616 CGACCAAGCCACTCGCAG 61.115 66.667 0.00 0.00 41.38 5.18
454 455 2.343758 GACCAAGCCACTCGCAGA 59.656 61.111 0.00 0.00 41.38 4.26
455 456 1.301716 GACCAAGCCACTCGCAGAA 60.302 57.895 0.00 0.00 41.38 3.02
456 457 1.294659 GACCAAGCCACTCGCAGAAG 61.295 60.000 0.00 0.00 41.38 2.85
457 458 2.684843 CCAAGCCACTCGCAGAAGC 61.685 63.158 0.00 0.00 41.38 3.86
458 459 1.962822 CAAGCCACTCGCAGAAGCA 60.963 57.895 0.00 0.00 42.27 3.91
459 460 1.227943 AAGCCACTCGCAGAAGCAA 60.228 52.632 0.00 0.00 42.27 3.91
460 461 0.819259 AAGCCACTCGCAGAAGCAAA 60.819 50.000 0.00 0.00 42.27 3.68
461 462 0.819259 AGCCACTCGCAGAAGCAAAA 60.819 50.000 0.00 0.00 42.27 2.44
462 463 0.661483 GCCACTCGCAGAAGCAAAAC 60.661 55.000 0.00 0.00 42.27 2.43
463 464 0.947244 CCACTCGCAGAAGCAAAACT 59.053 50.000 0.00 0.00 42.27 2.66
464 465 1.334419 CCACTCGCAGAAGCAAAACTG 60.334 52.381 0.00 0.00 42.27 3.16
465 466 1.331756 CACTCGCAGAAGCAAAACTGT 59.668 47.619 0.00 0.00 42.27 3.55
466 467 1.331756 ACTCGCAGAAGCAAAACTGTG 59.668 47.619 0.00 0.00 43.30 3.66
467 468 0.029300 TCGCAGAAGCAAAACTGTGC 59.971 50.000 0.00 0.00 45.28 4.57
478 479 5.467902 GCAAAACTGTGCTTTTCATGAAA 57.532 34.783 16.91 16.91 41.51 2.69
479 480 5.495502 GCAAAACTGTGCTTTTCATGAAAG 58.504 37.500 19.64 14.83 46.11 2.62
480 481 5.291614 GCAAAACTGTGCTTTTCATGAAAGA 59.708 36.000 19.64 10.86 46.24 2.52
481 482 6.183360 GCAAAACTGTGCTTTTCATGAAAGAA 60.183 34.615 19.64 6.68 46.24 2.52
482 483 7.623925 GCAAAACTGTGCTTTTCATGAAAGAAA 60.624 33.333 19.64 5.98 46.24 2.52
483 484 7.903995 AAACTGTGCTTTTCATGAAAGAAAA 57.096 28.000 19.64 5.64 46.24 2.29
484 485 7.903995 AACTGTGCTTTTCATGAAAGAAAAA 57.096 28.000 19.64 5.28 46.24 1.94
485 486 8.496707 AACTGTGCTTTTCATGAAAGAAAAAT 57.503 26.923 19.64 3.53 46.24 1.82
486 487 9.598517 AACTGTGCTTTTCATGAAAGAAAAATA 57.401 25.926 19.64 3.90 46.24 1.40
487 488 9.598517 ACTGTGCTTTTCATGAAAGAAAAATAA 57.401 25.926 19.64 3.20 46.24 1.40
506 507 9.669887 AAAAATAAATAAATTGAGAGCATGCCA 57.330 25.926 15.66 1.92 0.00 4.92
507 508 8.652810 AAATAAATAAATTGAGAGCATGCCAC 57.347 30.769 15.66 9.32 0.00 5.01
508 509 5.927281 AAATAAATTGAGAGCATGCCACT 57.073 34.783 15.66 14.46 0.00 4.00
509 510 5.927281 AATAAATTGAGAGCATGCCACTT 57.073 34.783 15.66 3.10 0.00 3.16
510 511 3.587797 AAATTGAGAGCATGCCACTTG 57.412 42.857 15.66 0.00 0.00 3.16
511 512 1.471119 ATTGAGAGCATGCCACTTGG 58.529 50.000 15.66 0.00 38.53 3.61
512 513 0.111061 TTGAGAGCATGCCACTTGGT 59.889 50.000 15.66 0.00 37.57 3.67
513 514 0.983467 TGAGAGCATGCCACTTGGTA 59.017 50.000 15.66 0.00 37.57 3.25
514 515 1.561076 TGAGAGCATGCCACTTGGTAT 59.439 47.619 15.66 0.00 41.36 2.73
520 521 2.338577 ATGCCACTTGGTATGCTCTC 57.661 50.000 0.00 0.00 39.13 3.20
521 522 0.983467 TGCCACTTGGTATGCTCTCA 59.017 50.000 0.00 0.00 37.57 3.27
522 523 1.065926 TGCCACTTGGTATGCTCTCAG 60.066 52.381 0.00 0.00 37.57 3.35
523 524 1.661341 CCACTTGGTATGCTCTCAGC 58.339 55.000 0.00 0.00 42.82 4.26
524 525 1.661341 CACTTGGTATGCTCTCAGCC 58.339 55.000 0.00 0.00 41.51 4.85
525 526 0.543749 ACTTGGTATGCTCTCAGCCC 59.456 55.000 0.00 0.00 41.51 5.19
526 527 0.531532 CTTGGTATGCTCTCAGCCCG 60.532 60.000 0.00 0.00 41.51 6.13
527 528 2.280457 GGTATGCTCTCAGCCCGC 60.280 66.667 0.00 0.00 41.51 6.13
528 529 2.280457 GTATGCTCTCAGCCCGCC 60.280 66.667 0.00 0.00 41.51 6.13
529 530 2.444706 TATGCTCTCAGCCCGCCT 60.445 61.111 0.00 0.00 41.51 5.52
530 531 2.066393 TATGCTCTCAGCCCGCCTT 61.066 57.895 0.00 0.00 41.51 4.35
531 532 0.759060 TATGCTCTCAGCCCGCCTTA 60.759 55.000 0.00 0.00 41.51 2.69
532 533 1.626356 ATGCTCTCAGCCCGCCTTAA 61.626 55.000 0.00 0.00 41.51 1.85
533 534 1.078426 GCTCTCAGCCCGCCTTAAA 60.078 57.895 0.00 0.00 34.48 1.52
534 535 0.464554 GCTCTCAGCCCGCCTTAAAT 60.465 55.000 0.00 0.00 34.48 1.40
535 536 1.303309 CTCTCAGCCCGCCTTAAATG 58.697 55.000 0.00 0.00 0.00 2.32
536 537 0.618458 TCTCAGCCCGCCTTAAATGT 59.382 50.000 0.00 0.00 0.00 2.71
537 538 1.017387 CTCAGCCCGCCTTAAATGTC 58.983 55.000 0.00 0.00 0.00 3.06
538 539 0.393808 TCAGCCCGCCTTAAATGTCC 60.394 55.000 0.00 0.00 0.00 4.02
539 540 1.076995 AGCCCGCCTTAAATGTCCC 60.077 57.895 0.00 0.00 0.00 4.46
540 541 1.076995 GCCCGCCTTAAATGTCCCT 60.077 57.895 0.00 0.00 0.00 4.20
541 542 0.683179 GCCCGCCTTAAATGTCCCTT 60.683 55.000 0.00 0.00 0.00 3.95
542 543 1.102978 CCCGCCTTAAATGTCCCTTG 58.897 55.000 0.00 0.00 0.00 3.61
543 544 1.102978 CCGCCTTAAATGTCCCTTGG 58.897 55.000 0.00 0.00 0.00 3.61
544 545 1.102978 CGCCTTAAATGTCCCTTGGG 58.897 55.000 0.00 0.00 0.00 4.12
545 546 1.340600 CGCCTTAAATGTCCCTTGGGA 60.341 52.381 3.91 3.91 0.00 4.37
546 547 2.379005 GCCTTAAATGTCCCTTGGGAG 58.621 52.381 8.93 0.00 0.00 4.30
547 548 2.950418 GCCTTAAATGTCCCTTGGGAGG 60.950 54.545 8.93 6.12 43.15 4.30
548 549 2.379005 CTTAAATGTCCCTTGGGAGGC 58.621 52.381 8.93 0.00 42.09 4.70
549 550 1.681229 TAAATGTCCCTTGGGAGGCT 58.319 50.000 8.93 0.00 42.09 4.58
550 551 0.332972 AAATGTCCCTTGGGAGGCTC 59.667 55.000 8.93 5.78 42.09 4.70
551 552 1.575447 AATGTCCCTTGGGAGGCTCC 61.575 60.000 25.80 25.80 42.09 4.70
565 566 4.856607 CTCCCGAACGAGCGCTCC 62.857 72.222 30.66 16.35 0.00 4.70
567 568 4.856607 CCCGAACGAGCGCTCCTC 62.857 72.222 30.66 24.35 37.22 3.71
568 569 4.116328 CCGAACGAGCGCTCCTCA 62.116 66.667 30.66 0.00 40.78 3.86
569 570 2.126463 CGAACGAGCGCTCCTCAA 60.126 61.111 30.66 0.00 40.78 3.02
570 571 1.517257 CGAACGAGCGCTCCTCAAT 60.517 57.895 30.66 12.82 40.78 2.57
571 572 1.078759 CGAACGAGCGCTCCTCAATT 61.079 55.000 30.66 16.90 40.78 2.32
572 573 1.797713 CGAACGAGCGCTCCTCAATTA 60.798 52.381 30.66 0.00 40.78 1.40
573 574 1.855360 GAACGAGCGCTCCTCAATTAG 59.145 52.381 30.66 16.53 40.78 1.73
574 575 0.818296 ACGAGCGCTCCTCAATTAGT 59.182 50.000 30.66 17.20 40.78 2.24
575 576 1.204941 ACGAGCGCTCCTCAATTAGTT 59.795 47.619 30.66 3.36 40.78 2.24
576 577 2.271800 CGAGCGCTCCTCAATTAGTTT 58.728 47.619 30.66 0.00 40.78 2.66
577 578 2.673368 CGAGCGCTCCTCAATTAGTTTT 59.327 45.455 30.66 0.00 40.78 2.43
578 579 3.484229 CGAGCGCTCCTCAATTAGTTTTG 60.484 47.826 30.66 8.25 40.78 2.44
639 640 7.049799 TCACATGAATACAATGTAGATCCGA 57.950 36.000 0.00 0.00 0.00 4.55
640 641 6.923508 TCACATGAATACAATGTAGATCCGAC 59.076 38.462 0.00 0.00 0.00 4.79
649 650 5.301045 ACAATGTAGATCCGACGGATTAAGA 59.699 40.000 29.24 18.74 43.27 2.10
657 658 2.550978 CGACGGATTAAGAAGCCACAT 58.449 47.619 0.00 0.00 36.54 3.21
703 704 3.654414 AGTATGTTTAGCGAGGCTATGC 58.346 45.455 3.14 3.14 41.01 3.14
723 724 4.189231 TGCGCCTTAAGATTAGTTTCTCC 58.811 43.478 4.18 0.00 0.00 3.71
730 731 7.581658 GCCTTAAGATTAGTTTCTCCTCCTTCA 60.582 40.741 3.36 0.00 0.00 3.02
736 737 9.273137 AGATTAGTTTCTCCTCCTTCAAAGATA 57.727 33.333 0.00 0.00 0.00 1.98
740 741 7.171653 AGTTTCTCCTCCTTCAAAGATAAAGG 58.828 38.462 0.00 0.00 42.89 3.11
757 758 3.821421 AAGGAACAACGAGAGAACTGT 57.179 42.857 0.00 0.00 0.00 3.55
759 760 4.931661 AGGAACAACGAGAGAACTGTTA 57.068 40.909 0.00 0.00 34.13 2.41
771 772 7.175293 ACGAGAGAACTGTTAAGATGTAAGACT 59.825 37.037 0.00 0.00 0.00 3.24
772 773 8.666573 CGAGAGAACTGTTAAGATGTAAGACTA 58.333 37.037 0.00 0.00 0.00 2.59
800 801 7.495934 TCTCCTTAATAATGCTTCTTTCTTCCG 59.504 37.037 0.00 0.00 0.00 4.30
801 802 6.542370 TCCTTAATAATGCTTCTTTCTTCCGG 59.458 38.462 0.00 0.00 0.00 5.14
802 803 6.318900 CCTTAATAATGCTTCTTTCTTCCGGT 59.681 38.462 0.00 0.00 0.00 5.28
803 804 5.567138 AATAATGCTTCTTTCTTCCGGTG 57.433 39.130 0.00 0.00 0.00 4.94
804 805 2.859165 ATGCTTCTTTCTTCCGGTGA 57.141 45.000 0.00 0.00 0.00 4.02
808 809 2.416893 GCTTCTTTCTTCCGGTGACATC 59.583 50.000 0.00 0.00 0.00 3.06
809 810 2.762535 TCTTTCTTCCGGTGACATCC 57.237 50.000 0.00 0.00 0.00 3.51
818 819 0.169672 CGGTGACATCCGTCGTTAGT 59.830 55.000 7.93 0.00 45.80 2.24
820 821 2.680577 GGTGACATCCGTCGTTAGTTT 58.319 47.619 0.00 0.00 45.80 2.66
821 822 2.410730 GGTGACATCCGTCGTTAGTTTG 59.589 50.000 0.00 0.00 45.80 2.93
822 823 2.410730 GTGACATCCGTCGTTAGTTTGG 59.589 50.000 0.00 0.00 45.80 3.28
823 824 2.296752 TGACATCCGTCGTTAGTTTGGA 59.703 45.455 0.00 0.00 45.80 3.53
824 825 3.243805 TGACATCCGTCGTTAGTTTGGAA 60.244 43.478 0.00 0.00 45.80 3.53
826 827 4.320870 ACATCCGTCGTTAGTTTGGAATT 58.679 39.130 0.00 0.00 31.42 2.17
827 828 4.758165 ACATCCGTCGTTAGTTTGGAATTT 59.242 37.500 0.00 0.00 31.42 1.82
828 829 4.996062 TCCGTCGTTAGTTTGGAATTTC 57.004 40.909 0.00 0.00 0.00 2.17
829 830 4.378774 TCCGTCGTTAGTTTGGAATTTCA 58.621 39.130 0.00 0.00 0.00 2.69
830 831 4.211794 TCCGTCGTTAGTTTGGAATTTCAC 59.788 41.667 0.00 0.00 0.00 3.18
831 832 4.212636 CCGTCGTTAGTTTGGAATTTCACT 59.787 41.667 0.00 0.00 0.00 3.41
832 833 5.277634 CCGTCGTTAGTTTGGAATTTCACTT 60.278 40.000 0.00 0.00 0.00 3.16
833 834 6.196571 CGTCGTTAGTTTGGAATTTCACTTT 58.803 36.000 0.00 0.00 0.00 2.66
834 835 7.346695 CGTCGTTAGTTTGGAATTTCACTTTA 58.653 34.615 0.00 0.00 0.00 1.85
835 836 7.529519 CGTCGTTAGTTTGGAATTTCACTTTAG 59.470 37.037 0.00 0.00 0.00 1.85
837 838 8.895737 TCGTTAGTTTGGAATTTCACTTTAGTT 58.104 29.630 0.00 0.00 0.00 2.24
838 839 8.953990 CGTTAGTTTGGAATTTCACTTTAGTTG 58.046 33.333 0.00 0.00 0.00 3.16
839 840 9.244799 GTTAGTTTGGAATTTCACTTTAGTTGG 57.755 33.333 0.00 0.00 0.00 3.77
840 841 6.816136 AGTTTGGAATTTCACTTTAGTTGGG 58.184 36.000 0.00 0.00 0.00 4.12
841 842 6.382859 AGTTTGGAATTTCACTTTAGTTGGGT 59.617 34.615 0.00 0.00 0.00 4.51
844 845 5.303333 TGGAATTTCACTTTAGTTGGGTTCC 59.697 40.000 0.00 0.00 33.71 3.62
845 846 5.538813 GGAATTTCACTTTAGTTGGGTTCCT 59.461 40.000 0.00 0.00 0.00 3.36
848 849 8.721133 AATTTCACTTTAGTTGGGTTCCTAAT 57.279 30.769 0.00 0.00 0.00 1.73
851 852 6.472887 TCACTTTAGTTGGGTTCCTAATCAG 58.527 40.000 0.00 0.00 0.00 2.90
852 853 5.123979 CACTTTAGTTGGGTTCCTAATCAGC 59.876 44.000 0.00 0.00 0.00 4.26
854 855 3.356529 AGTTGGGTTCCTAATCAGCTG 57.643 47.619 7.63 7.63 0.00 4.24
855 856 2.912956 AGTTGGGTTCCTAATCAGCTGA 59.087 45.455 20.79 20.79 0.00 4.26
857 858 3.845781 TGGGTTCCTAATCAGCTGATC 57.154 47.619 28.83 15.08 32.75 2.92
858 859 2.103094 TGGGTTCCTAATCAGCTGATCG 59.897 50.000 28.83 21.18 32.75 3.69
860 861 2.548920 GGTTCCTAATCAGCTGATCGGG 60.549 54.545 29.98 29.05 32.75 5.14
862 863 0.321122 CCTAATCAGCTGATCGGGCC 60.321 60.000 28.83 0.00 32.75 5.80
863 864 0.321122 CTAATCAGCTGATCGGGCCC 60.321 60.000 28.83 13.57 32.75 5.80
864 865 1.053835 TAATCAGCTGATCGGGCCCA 61.054 55.000 28.83 9.77 32.75 5.36
866 867 1.925285 ATCAGCTGATCGGGCCCAAA 61.925 55.000 23.75 9.92 0.00 3.28
867 868 1.454479 CAGCTGATCGGGCCCAAAT 60.454 57.895 24.92 15.12 0.00 2.32
868 869 1.152881 AGCTGATCGGGCCCAAATC 60.153 57.895 24.92 23.20 0.00 2.17
869 870 2.196245 GCTGATCGGGCCCAAATCC 61.196 63.158 24.92 8.46 0.00 3.01
871 872 1.077068 TGATCGGGCCCAAATCCAC 60.077 57.895 24.92 5.88 0.00 4.02
872 873 2.124320 ATCGGGCCCAAATCCACG 60.124 61.111 24.92 4.81 0.00 4.94
873 874 2.886730 GATCGGGCCCAAATCCACGT 62.887 60.000 24.92 0.00 0.00 4.49
875 876 2.110352 CGGGCCCAAATCCACGTAC 61.110 63.158 24.92 0.00 0.00 3.67
876 877 2.110352 GGGCCCAAATCCACGTACG 61.110 63.158 19.95 15.01 0.00 3.67
877 878 2.757056 GGCCCAAATCCACGTACGC 61.757 63.158 16.72 0.00 0.00 4.42
878 879 1.743995 GCCCAAATCCACGTACGCT 60.744 57.895 16.72 0.00 0.00 5.07
879 880 1.303091 GCCCAAATCCACGTACGCTT 61.303 55.000 16.72 0.99 0.00 4.68
880 881 0.725117 CCCAAATCCACGTACGCTTC 59.275 55.000 16.72 0.00 0.00 3.86
881 882 1.434555 CCAAATCCACGTACGCTTCA 58.565 50.000 16.72 0.00 0.00 3.02
882 883 1.393539 CCAAATCCACGTACGCTTCAG 59.606 52.381 16.72 0.00 0.00 3.02
883 884 1.393539 CAAATCCACGTACGCTTCAGG 59.606 52.381 16.72 9.86 0.00 3.86
884 885 0.739813 AATCCACGTACGCTTCAGGC 60.740 55.000 16.72 0.00 37.64 4.85
885 886 2.573609 ATCCACGTACGCTTCAGGCC 62.574 60.000 16.72 0.00 37.74 5.19
886 887 2.813908 CACGTACGCTTCAGGCCC 60.814 66.667 16.72 0.00 37.74 5.80
892 893 4.467084 CGCTTCAGGCCCGCCTAA 62.467 66.667 8.18 0.00 46.28 2.69
893 894 2.824489 GCTTCAGGCCCGCCTAAC 60.824 66.667 8.18 0.00 46.28 2.34
896 897 1.306312 TTCAGGCCCGCCTAACCTA 60.306 57.895 8.18 0.00 46.28 3.08
897 898 0.693092 TTCAGGCCCGCCTAACCTAT 60.693 55.000 8.18 0.00 46.28 2.57
898 899 0.693092 TCAGGCCCGCCTAACCTATT 60.693 55.000 8.18 0.00 46.28 1.73
899 900 0.535102 CAGGCCCGCCTAACCTATTG 60.535 60.000 8.18 0.00 46.28 1.90
900 901 0.986550 AGGCCCGCCTAACCTATTGT 60.987 55.000 6.41 0.00 46.14 2.71
901 902 0.534427 GGCCCGCCTAACCTATTGTC 60.534 60.000 0.00 0.00 0.00 3.18
902 903 0.534427 GCCCGCCTAACCTATTGTCC 60.534 60.000 0.00 0.00 0.00 4.02
904 905 1.474498 CCCGCCTAACCTATTGTCCAC 60.474 57.143 0.00 0.00 0.00 4.02
905 906 1.474498 CCGCCTAACCTATTGTCCACC 60.474 57.143 0.00 0.00 0.00 4.61
906 907 1.485066 CGCCTAACCTATTGTCCACCT 59.515 52.381 0.00 0.00 0.00 4.00
908 909 2.483188 GCCTAACCTATTGTCCACCTCG 60.483 54.545 0.00 0.00 0.00 4.63
910 911 3.068307 CCTAACCTATTGTCCACCTCGAG 59.932 52.174 5.13 5.13 0.00 4.04
911 912 2.526888 ACCTATTGTCCACCTCGAGA 57.473 50.000 15.71 0.00 0.00 4.04
912 913 3.033659 ACCTATTGTCCACCTCGAGAT 57.966 47.619 15.71 0.00 0.00 2.75
913 914 4.180377 ACCTATTGTCCACCTCGAGATA 57.820 45.455 15.71 0.64 0.00 1.98
915 916 5.148502 ACCTATTGTCCACCTCGAGATATT 58.851 41.667 15.71 0.00 0.00 1.28
916 917 5.602978 ACCTATTGTCCACCTCGAGATATTT 59.397 40.000 15.71 0.00 0.00 1.40
917 918 6.099845 ACCTATTGTCCACCTCGAGATATTTT 59.900 38.462 15.71 0.00 0.00 1.82
918 919 6.647067 CCTATTGTCCACCTCGAGATATTTTC 59.353 42.308 15.71 0.00 0.00 2.29
920 921 5.677319 TGTCCACCTCGAGATATTTTCTT 57.323 39.130 15.71 0.00 33.74 2.52
921 922 6.049955 TGTCCACCTCGAGATATTTTCTTT 57.950 37.500 15.71 0.00 33.74 2.52
924 1225 7.926555 TGTCCACCTCGAGATATTTTCTTTATC 59.073 37.037 15.71 0.00 33.74 1.75
1072 1381 0.539518 GCCCCTCTTCTTCTCCTCAC 59.460 60.000 0.00 0.00 0.00 3.51
1077 1386 0.491823 TCTTCTTCTCCTCACCCCCA 59.508 55.000 0.00 0.00 0.00 4.96
1079 1388 0.547712 TTCTTCTCCTCACCCCCAGG 60.548 60.000 0.00 0.00 40.04 4.45
1224 1533 2.033448 CCCGGCAGCAAGTACCAA 59.967 61.111 0.00 0.00 0.00 3.67
1246 1555 2.731721 CTCGCCACAACGTGCGTA 60.732 61.111 16.19 4.47 35.70 4.42
1268 1577 3.458163 CCTTCGCCCGTGCTCCTA 61.458 66.667 0.00 0.00 34.43 2.94
1269 1578 2.797278 CCTTCGCCCGTGCTCCTAT 61.797 63.158 0.00 0.00 34.43 2.57
1319 1629 4.785453 CCCCCTCACTTCGCCTGC 62.785 72.222 0.00 0.00 0.00 4.85
1321 1631 4.379243 CCCTCACTTCGCCTGCGT 62.379 66.667 11.68 0.00 40.74 5.24
1322 1632 3.114616 CCTCACTTCGCCTGCGTG 61.115 66.667 11.68 8.36 40.74 5.34
1323 1633 2.356313 CTCACTTCGCCTGCGTGT 60.356 61.111 11.68 8.97 40.74 4.49
1324 1634 2.661537 TCACTTCGCCTGCGTGTG 60.662 61.111 23.21 23.21 41.71 3.82
1325 1635 2.967076 CACTTCGCCTGCGTGTGT 60.967 61.111 21.94 13.29 38.72 3.72
1326 1636 1.663388 CACTTCGCCTGCGTGTGTA 60.663 57.895 21.94 0.28 38.72 2.90
1327 1637 1.014044 CACTTCGCCTGCGTGTGTAT 61.014 55.000 21.94 1.75 38.72 2.29
1328 1638 0.736325 ACTTCGCCTGCGTGTGTATC 60.736 55.000 11.68 0.00 40.74 2.24
1329 1639 0.458543 CTTCGCCTGCGTGTGTATCT 60.459 55.000 11.68 0.00 40.74 1.98
1330 1640 0.735978 TTCGCCTGCGTGTGTATCTG 60.736 55.000 11.68 0.00 40.74 2.90
1331 1641 2.802667 CGCCTGCGTGTGTATCTGC 61.803 63.158 2.83 0.00 34.35 4.26
1423 1735 0.693049 ACACCATCCAGTCCAAGTCC 59.307 55.000 0.00 0.00 0.00 3.85
1429 1741 1.002868 CCAGTCCAAGTCCCTGCTG 60.003 63.158 0.00 0.00 0.00 4.41
1455 1769 0.106819 GGTACCCCGCTCACTCTCTA 60.107 60.000 0.00 0.00 0.00 2.43
1467 1781 1.092921 ACTCTCTACTCGCTCGCAGG 61.093 60.000 0.00 0.00 0.00 4.85
1581 1896 6.845302 TGAGTTTTAGTTAAGATGCATGCTG 58.155 36.000 20.33 0.00 0.00 4.41
1613 1958 1.195448 GCTCGATGGCGATATTTGGTG 59.805 52.381 0.00 0.00 46.80 4.17
1658 2005 0.107945 CTAGCACCAGGAAGGCAGAC 60.108 60.000 0.00 0.00 43.14 3.51
2235 2764 0.105964 TATCCGGCAAGATCCAACCG 59.894 55.000 10.16 10.16 45.21 4.44
2749 3499 2.479820 GAACCAAGCGGGGCCTTACT 62.480 60.000 0.84 0.00 42.91 2.24
2750 3500 2.076597 AACCAAGCGGGGCCTTACTT 62.077 55.000 0.84 1.59 42.91 2.24
2751 3501 1.202769 ACCAAGCGGGGCCTTACTTA 61.203 55.000 0.84 0.00 42.91 2.24
2753 3503 1.418637 CCAAGCGGGGCCTTACTTATA 59.581 52.381 0.84 0.00 0.00 0.98
2755 3505 3.497942 CCAAGCGGGGCCTTACTTATATT 60.498 47.826 0.84 0.00 0.00 1.28
2756 3506 4.142038 CAAGCGGGGCCTTACTTATATTT 58.858 43.478 0.84 0.00 0.00 1.40
2757 3507 3.751518 AGCGGGGCCTTACTTATATTTG 58.248 45.455 0.84 0.00 0.00 2.32
2759 3509 3.749632 GCGGGGCCTTACTTATATTTGGT 60.750 47.826 0.84 0.00 0.00 3.67
2861 3741 6.205658 GGTGAAGCAGTGAGTCTTTATTCTTT 59.794 38.462 0.00 0.00 0.00 2.52
2985 3866 3.648067 TGTTTGGCAAAATACATCCCCAA 59.352 39.130 15.29 0.00 0.00 4.12
3011 3892 8.087303 AGCCTATCTATCAATATGAATGCTGA 57.913 34.615 0.00 0.00 0.00 4.26
3019 3900 6.080648 TCAATATGAATGCTGATGCCTTTC 57.919 37.500 0.00 0.00 38.71 2.62
3025 3906 4.951715 TGAATGCTGATGCCTTTCTTGTAT 59.048 37.500 0.00 0.00 38.71 2.29
3128 4010 8.309656 TGCCTATACATATCAGTCTCATTTCTG 58.690 37.037 0.00 0.00 0.00 3.02
3189 4071 9.780186 ACTAATTTCTATAAGTTGGTGATAGGC 57.220 33.333 0.00 0.00 27.32 3.93
3199 4081 3.737559 TGGTGATAGGCCTTGTTGAAT 57.262 42.857 12.58 0.00 0.00 2.57
3205 4087 0.679960 AGGCCTTGTTGAATACCCGC 60.680 55.000 0.00 0.00 0.00 6.13
3234 4116 9.071276 TCTCTATTCTGATGCAATATTTTTCCC 57.929 33.333 0.00 0.00 0.00 3.97
3320 4202 2.159014 TGCTGCCTATTACCAAGTACCG 60.159 50.000 0.00 0.00 0.00 4.02
3408 4290 0.459489 TGTGCTTGCAACTGAAACCC 59.541 50.000 0.00 0.00 0.00 4.11
3571 4453 0.179059 TGCAGTCACATGGAACGTGT 60.179 50.000 0.00 0.00 35.79 4.49
3783 4665 8.049117 TCATATAGCTCCTGTTGAGATTTTTGT 58.951 33.333 0.00 0.00 44.42 2.83
3791 4673 6.828273 TCCTGTTGAGATTTTTGTCTGAAGAA 59.172 34.615 0.00 0.00 0.00 2.52
3811 4693 8.298854 TGAAGAACTCATGAACAACAAATATGG 58.701 33.333 0.00 0.00 0.00 2.74
3837 4720 0.252881 TCAGGAGGCCAGGATTGAGT 60.253 55.000 5.01 0.00 0.00 3.41
3838 4721 1.008327 TCAGGAGGCCAGGATTGAGTA 59.992 52.381 5.01 0.00 0.00 2.59
3964 4855 9.087424 GTGATGGAAAATATTAGTTCCTTTTGC 57.913 33.333 16.40 0.87 43.24 3.68
3971 4862 8.879427 AAATATTAGTTCCTTTTGCTGTAGGT 57.121 30.769 0.00 0.00 33.15 3.08
4103 4994 5.432680 ACACTCTCAATGACCATCTTCAT 57.567 39.130 0.00 0.00 37.87 2.57
4497 5471 5.009911 TGCCATACCATCAATTGCATTCTAC 59.990 40.000 0.00 0.00 0.00 2.59
4498 5472 5.242393 GCCATACCATCAATTGCATTCTACT 59.758 40.000 0.00 0.00 0.00 2.57
4499 5473 6.569226 GCCATACCATCAATTGCATTCTACTC 60.569 42.308 0.00 0.00 0.00 2.59
4500 5474 6.072286 CCATACCATCAATTGCATTCTACTCC 60.072 42.308 0.00 0.00 0.00 3.85
4501 5475 5.121380 ACCATCAATTGCATTCTACTCCT 57.879 39.130 0.00 0.00 0.00 3.69
4502 5476 5.513233 ACCATCAATTGCATTCTACTCCTT 58.487 37.500 0.00 0.00 0.00 3.36
4503 5477 6.662755 ACCATCAATTGCATTCTACTCCTTA 58.337 36.000 0.00 0.00 0.00 2.69
4610 6279 4.989279 AAATATGTGTTGAGGTCATGGC 57.011 40.909 0.00 0.00 0.00 4.40
4615 6284 0.948623 TGTTGAGGTCATGGCGAACG 60.949 55.000 0.00 0.00 35.97 3.95
4617 6286 0.250124 TTGAGGTCATGGCGAACGTT 60.250 50.000 0.00 0.00 35.97 3.99
4716 6433 7.081857 AGGTTGTATCCTTTAGTTGGTTACA 57.918 36.000 0.00 0.00 37.74 2.41
4726 6443 2.567985 AGTTGGTTACACAAAGGGACG 58.432 47.619 0.00 0.00 31.17 4.79
4747 6464 7.063544 GGGACGATCTCAATTTATATGTACTGC 59.936 40.741 0.00 0.00 0.00 4.40
5145 8035 4.224370 GGGTGTCCTGTAGTTTTGAGGATA 59.776 45.833 0.00 0.00 38.18 2.59
5201 8092 6.479884 AGTTCTTCTGCACATCTTCCTAAAT 58.520 36.000 0.00 0.00 0.00 1.40
5267 8165 9.865321 CATTTGATGAAGGTCATGTAAAAAGAT 57.135 29.630 0.00 0.00 37.20 2.40
5319 8217 7.849804 TTAGTCTGATGTAAAAGAGGAATGC 57.150 36.000 0.00 0.00 0.00 3.56
5360 8258 8.477419 TCCTTTCCTAATTCTGTGATTTTGTT 57.523 30.769 0.00 0.00 0.00 2.83
5681 8579 8.517062 AGATTGCAGAAGTTTCTTATGCTATT 57.483 30.769 22.96 12.05 34.74 1.73
5682 8580 8.404000 AGATTGCAGAAGTTTCTTATGCTATTG 58.596 33.333 22.96 0.00 34.74 1.90
5683 8581 7.452880 TTGCAGAAGTTTCTTATGCTATTGT 57.547 32.000 22.96 0.00 34.74 2.71
5684 8582 8.560355 TTGCAGAAGTTTCTTATGCTATTGTA 57.440 30.769 22.96 5.83 34.74 2.41
5704 8603 0.031178 AAAGCTTGCACCTTCTTGCG 59.969 50.000 0.00 0.00 46.20 4.85
5728 8627 8.505625 GCGTCAGTTAAGCTAACTACTATCTAT 58.494 37.037 7.85 0.00 46.66 1.98
5736 8635 8.618702 AAGCTAACTACTATCTATAAGACGCA 57.381 34.615 0.00 0.00 0.00 5.24
5745 8644 8.905660 ACTATCTATAAGACGCAGAGTAAAGA 57.094 34.615 0.00 0.00 0.00 2.52
5955 8854 5.087323 CCTTCCTGCTATGAGATAGGGTTA 58.913 45.833 0.00 0.00 33.43 2.85
5984 8883 5.869579 AGGTGGCGATAATAGTTGAATCAT 58.130 37.500 0.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 7.273815 GGTCTAGTTTAAAGATCTCAACGTGAG 59.726 40.741 0.00 8.24 45.59 3.51
12 13 6.033619 CGGTCTAGTTTAAAGATCTCAACGTG 59.966 42.308 0.00 0.00 0.00 4.49
13 14 6.091437 CGGTCTAGTTTAAAGATCTCAACGT 58.909 40.000 0.00 0.00 0.00 3.99
14 15 5.004535 GCGGTCTAGTTTAAAGATCTCAACG 59.995 44.000 0.00 0.00 0.00 4.10
15 16 5.004535 CGCGGTCTAGTTTAAAGATCTCAAC 59.995 44.000 0.00 0.00 0.00 3.18
16 17 5.100259 CGCGGTCTAGTTTAAAGATCTCAA 58.900 41.667 0.00 0.00 0.00 3.02
17 18 4.157289 ACGCGGTCTAGTTTAAAGATCTCA 59.843 41.667 12.47 0.00 0.00 3.27
18 19 4.499758 CACGCGGTCTAGTTTAAAGATCTC 59.500 45.833 12.47 0.00 0.00 2.75
19 20 4.082354 ACACGCGGTCTAGTTTAAAGATCT 60.082 41.667 12.47 0.00 0.00 2.75
20 21 4.171754 ACACGCGGTCTAGTTTAAAGATC 58.828 43.478 12.47 0.00 0.00 2.75
21 22 4.184079 ACACGCGGTCTAGTTTAAAGAT 57.816 40.909 12.47 0.00 0.00 2.40
22 23 3.648339 ACACGCGGTCTAGTTTAAAGA 57.352 42.857 12.47 0.00 0.00 2.52
23 24 3.737266 TCAACACGCGGTCTAGTTTAAAG 59.263 43.478 12.47 0.00 0.00 1.85
24 25 3.490526 GTCAACACGCGGTCTAGTTTAAA 59.509 43.478 12.47 0.00 0.00 1.52
25 26 3.052036 GTCAACACGCGGTCTAGTTTAA 58.948 45.455 12.47 0.00 0.00 1.52
26 27 2.034432 TGTCAACACGCGGTCTAGTTTA 59.966 45.455 12.47 0.00 0.00 2.01
27 28 1.202440 TGTCAACACGCGGTCTAGTTT 60.202 47.619 12.47 0.00 0.00 2.66
28 29 0.386476 TGTCAACACGCGGTCTAGTT 59.614 50.000 12.47 4.14 0.00 2.24
29 30 0.386476 TTGTCAACACGCGGTCTAGT 59.614 50.000 12.47 0.00 0.00 2.57
30 31 1.493772 TTTGTCAACACGCGGTCTAG 58.506 50.000 12.47 0.00 0.00 2.43
31 32 2.157834 ATTTGTCAACACGCGGTCTA 57.842 45.000 12.47 0.00 0.00 2.59
32 33 1.305201 AATTTGTCAACACGCGGTCT 58.695 45.000 12.47 0.00 0.00 3.85
33 34 2.113910 AAATTTGTCAACACGCGGTC 57.886 45.000 12.47 0.00 0.00 4.79
34 35 2.159366 TCAAAATTTGTCAACACGCGGT 60.159 40.909 12.47 2.05 0.00 5.68
35 36 2.455032 TCAAAATTTGTCAACACGCGG 58.545 42.857 12.47 1.27 0.00 6.46
36 37 3.728221 TCATCAAAATTTGTCAACACGCG 59.272 39.130 3.53 3.53 0.00 6.01
37 38 5.633996 TTCATCAAAATTTGTCAACACGC 57.366 34.783 5.56 0.00 0.00 5.34
38 39 7.627585 AGATTCATCAAAATTTGTCAACACG 57.372 32.000 5.56 0.00 0.00 4.49
73 74 5.488262 AAAGTGCTCCCAATATGCTTTTT 57.512 34.783 0.00 0.00 0.00 1.94
74 75 5.488262 AAAAGTGCTCCCAATATGCTTTT 57.512 34.783 0.00 0.00 32.15 2.27
75 76 5.488262 AAAAAGTGCTCCCAATATGCTTT 57.512 34.783 0.00 0.00 0.00 3.51
94 95 6.255453 CGAGAGGCACATTTGAAAAAGAAAAA 59.745 34.615 0.00 0.00 0.00 1.94
95 96 5.748152 CGAGAGGCACATTTGAAAAAGAAAA 59.252 36.000 0.00 0.00 0.00 2.29
96 97 5.280945 CGAGAGGCACATTTGAAAAAGAAA 58.719 37.500 0.00 0.00 0.00 2.52
97 98 4.792704 GCGAGAGGCACATTTGAAAAAGAA 60.793 41.667 0.00 0.00 42.87 2.52
98 99 3.304659 GCGAGAGGCACATTTGAAAAAGA 60.305 43.478 0.00 0.00 42.87 2.52
99 100 2.982470 GCGAGAGGCACATTTGAAAAAG 59.018 45.455 0.00 0.00 42.87 2.27
100 101 2.604373 CGCGAGAGGCACATTTGAAAAA 60.604 45.455 0.00 0.00 43.84 1.94
101 102 1.069296 CGCGAGAGGCACATTTGAAAA 60.069 47.619 0.00 0.00 43.84 2.29
102 103 0.516877 CGCGAGAGGCACATTTGAAA 59.483 50.000 0.00 0.00 43.84 2.69
103 104 1.298157 CCGCGAGAGGCACATTTGAA 61.298 55.000 8.23 0.00 43.84 2.69
104 105 1.741401 CCGCGAGAGGCACATTTGA 60.741 57.895 8.23 0.00 43.84 2.69
105 106 1.298157 TTCCGCGAGAGGCACATTTG 61.298 55.000 8.23 0.00 43.84 2.32
106 107 1.003839 TTCCGCGAGAGGCACATTT 60.004 52.632 8.23 0.00 43.84 2.32
107 108 1.448540 CTTCCGCGAGAGGCACATT 60.449 57.895 8.23 0.00 43.84 2.71
108 109 2.185350 CTTCCGCGAGAGGCACAT 59.815 61.111 8.23 0.00 43.84 3.21
109 110 4.742201 GCTTCCGCGAGAGGCACA 62.742 66.667 20.89 0.00 46.54 4.57
113 114 0.951040 AGTTTTGCTTCCGCGAGAGG 60.951 55.000 8.23 4.88 39.65 3.69
114 115 1.710013 TAGTTTTGCTTCCGCGAGAG 58.290 50.000 8.23 5.93 39.65 3.20
115 116 1.999735 CATAGTTTTGCTTCCGCGAGA 59.000 47.619 8.23 0.00 39.65 4.04
116 117 1.529826 GCATAGTTTTGCTTCCGCGAG 60.530 52.381 8.23 0.00 39.57 5.03
117 118 0.446222 GCATAGTTTTGCTTCCGCGA 59.554 50.000 8.23 0.00 39.57 5.87
118 119 2.930168 GCATAGTTTTGCTTCCGCG 58.070 52.632 0.00 0.00 39.57 6.46
125 126 2.742053 TCCGTGAGAAGCATAGTTTTGC 59.258 45.455 0.00 0.00 43.09 3.68
126 127 4.962693 CTTCCGTGAGAAGCATAGTTTTG 58.037 43.478 0.00 0.00 45.38 2.44
154 155 3.304794 CGTGCCTATCAAAACCGGAAAAA 60.305 43.478 9.46 0.00 0.00 1.94
155 156 2.226912 CGTGCCTATCAAAACCGGAAAA 59.773 45.455 9.46 0.00 0.00 2.29
156 157 1.807742 CGTGCCTATCAAAACCGGAAA 59.192 47.619 9.46 0.00 0.00 3.13
157 158 1.444836 CGTGCCTATCAAAACCGGAA 58.555 50.000 9.46 0.00 0.00 4.30
158 159 0.391927 CCGTGCCTATCAAAACCGGA 60.392 55.000 9.46 0.00 33.84 5.14
159 160 1.988834 GCCGTGCCTATCAAAACCGG 61.989 60.000 0.00 0.00 34.75 5.28
160 161 1.427819 GCCGTGCCTATCAAAACCG 59.572 57.895 0.00 0.00 0.00 4.44
161 162 1.807226 GGCCGTGCCTATCAAAACC 59.193 57.895 7.58 0.00 46.69 3.27
223 224 2.286833 CGTGCTCTCGGAAACAGAAAAA 59.713 45.455 0.00 0.00 0.00 1.94
224 225 1.864711 CGTGCTCTCGGAAACAGAAAA 59.135 47.619 0.00 0.00 0.00 2.29
225 226 1.497991 CGTGCTCTCGGAAACAGAAA 58.502 50.000 0.00 0.00 0.00 2.52
226 227 3.195041 CGTGCTCTCGGAAACAGAA 57.805 52.632 0.00 0.00 0.00 3.02
227 228 4.966005 CGTGCTCTCGGAAACAGA 57.034 55.556 0.00 0.00 0.00 3.41
241 242 4.088421 GTGATAGGCACGACCGTG 57.912 61.111 17.19 17.19 46.52 4.94
248 249 2.928116 GTTGTACTTCCGTGATAGGCAC 59.072 50.000 0.00 0.00 44.21 5.01
249 250 2.093869 GGTTGTACTTCCGTGATAGGCA 60.094 50.000 0.00 0.00 0.00 4.75
250 251 2.547826 GGTTGTACTTCCGTGATAGGC 58.452 52.381 0.00 0.00 0.00 3.93
251 252 2.805845 CGGTTGTACTTCCGTGATAGG 58.194 52.381 16.88 0.00 41.58 2.57
258 259 2.268730 GAGGTACGGTTGTACTTCCG 57.731 55.000 21.21 21.21 46.45 4.30
264 265 2.183478 TCACGAGAGGTACGGTTGTA 57.817 50.000 0.00 0.00 34.93 2.41
265 266 1.321474 TTCACGAGAGGTACGGTTGT 58.679 50.000 0.00 0.00 34.93 3.32
266 267 2.325761 CTTTCACGAGAGGTACGGTTG 58.674 52.381 0.00 0.00 34.93 3.77
267 268 1.336609 GCTTTCACGAGAGGTACGGTT 60.337 52.381 0.00 0.00 34.93 4.44
268 269 0.243095 GCTTTCACGAGAGGTACGGT 59.757 55.000 0.00 0.00 34.93 4.83
269 270 0.242825 TGCTTTCACGAGAGGTACGG 59.757 55.000 0.00 0.00 34.93 4.02
270 271 2.060326 TTGCTTTCACGAGAGGTACG 57.940 50.000 0.00 0.00 0.00 3.67
271 272 3.362693 CGTTTTGCTTTCACGAGAGGTAC 60.363 47.826 0.00 0.00 35.93 3.34
272 273 2.798283 CGTTTTGCTTTCACGAGAGGTA 59.202 45.455 0.00 0.00 35.93 3.08
273 274 1.597663 CGTTTTGCTTTCACGAGAGGT 59.402 47.619 0.00 0.00 35.93 3.85
274 275 1.069906 CCGTTTTGCTTTCACGAGAGG 60.070 52.381 0.00 0.00 35.93 3.69
275 276 1.597663 ACCGTTTTGCTTTCACGAGAG 59.402 47.619 0.00 0.00 35.93 3.20
276 277 1.329292 CACCGTTTTGCTTTCACGAGA 59.671 47.619 0.00 0.00 35.93 4.04
277 278 1.741993 CACCGTTTTGCTTTCACGAG 58.258 50.000 0.00 0.00 35.93 4.18
278 279 0.248296 GCACCGTTTTGCTTTCACGA 60.248 50.000 0.00 0.00 39.59 4.35
279 280 1.206115 GGCACCGTTTTGCTTTCACG 61.206 55.000 1.50 0.00 42.56 4.35
280 281 0.102300 AGGCACCGTTTTGCTTTCAC 59.898 50.000 1.50 0.00 42.56 3.18
281 282 0.383949 GAGGCACCGTTTTGCTTTCA 59.616 50.000 1.50 0.00 42.56 2.69
282 283 0.668535 AGAGGCACCGTTTTGCTTTC 59.331 50.000 1.50 1.12 42.56 2.62
283 284 0.668535 GAGAGGCACCGTTTTGCTTT 59.331 50.000 1.50 0.00 42.56 3.51
284 285 0.465460 TGAGAGGCACCGTTTTGCTT 60.465 50.000 1.50 0.00 42.56 3.91
285 286 1.148273 TGAGAGGCACCGTTTTGCT 59.852 52.632 1.50 0.00 42.56 3.91
286 287 1.282875 GTGAGAGGCACCGTTTTGC 59.717 57.895 0.00 0.00 41.78 3.68
287 288 0.878523 TCGTGAGAGGCACCGTTTTG 60.879 55.000 0.00 0.00 44.85 2.44
288 289 0.179067 TTCGTGAGAGGCACCGTTTT 60.179 50.000 0.00 0.00 44.85 2.43
289 290 0.179067 TTTCGTGAGAGGCACCGTTT 60.179 50.000 0.00 0.00 44.85 3.60
290 291 0.600255 CTTTCGTGAGAGGCACCGTT 60.600 55.000 0.00 0.00 44.85 4.44
291 292 1.006102 CTTTCGTGAGAGGCACCGT 60.006 57.895 0.00 0.00 44.85 4.83
292 293 1.738099 CCTTTCGTGAGAGGCACCG 60.738 63.158 0.00 0.00 44.85 4.94
293 294 0.034896 TTCCTTTCGTGAGAGGCACC 59.965 55.000 1.64 0.00 44.85 5.01
294 295 1.801178 CTTTCCTTTCGTGAGAGGCAC 59.199 52.381 1.64 0.00 43.69 5.01
295 296 1.691976 TCTTTCCTTTCGTGAGAGGCA 59.308 47.619 1.64 0.00 43.69 4.75
296 297 2.457366 TCTTTCCTTTCGTGAGAGGC 57.543 50.000 1.64 0.00 43.69 4.70
297 298 5.057149 TCTTTTCTTTCCTTTCGTGAGAGG 58.943 41.667 0.06 0.06 43.69 3.69
298 299 6.604735 TTCTTTTCTTTCCTTTCGTGAGAG 57.395 37.500 0.00 0.00 43.69 3.20
299 300 6.995511 TTTCTTTTCTTTCCTTTCGTGAGA 57.004 33.333 0.00 0.00 39.20 3.27
300 301 8.634475 ATTTTTCTTTTCTTTCCTTTCGTGAG 57.366 30.769 0.00 0.00 0.00 3.51
301 302 8.868916 CAATTTTTCTTTTCTTTCCTTTCGTGA 58.131 29.630 0.00 0.00 0.00 4.35
302 303 8.655970 ACAATTTTTCTTTTCTTTCCTTTCGTG 58.344 29.630 0.00 0.00 0.00 4.35
303 304 8.771920 ACAATTTTTCTTTTCTTTCCTTTCGT 57.228 26.923 0.00 0.00 0.00 3.85
332 333 6.805271 CGACTATACCTCTCAGAAACGAAAAA 59.195 38.462 0.00 0.00 0.00 1.94
333 334 6.072286 ACGACTATACCTCTCAGAAACGAAAA 60.072 38.462 0.00 0.00 0.00 2.29
334 335 5.413833 ACGACTATACCTCTCAGAAACGAAA 59.586 40.000 0.00 0.00 0.00 3.46
335 336 4.940046 ACGACTATACCTCTCAGAAACGAA 59.060 41.667 0.00 0.00 0.00 3.85
336 337 4.331992 CACGACTATACCTCTCAGAAACGA 59.668 45.833 0.00 0.00 0.00 3.85
337 338 4.589252 CACGACTATACCTCTCAGAAACG 58.411 47.826 0.00 0.00 0.00 3.60
338 339 4.352887 GCACGACTATACCTCTCAGAAAC 58.647 47.826 0.00 0.00 0.00 2.78
339 340 3.380637 GGCACGACTATACCTCTCAGAAA 59.619 47.826 0.00 0.00 0.00 2.52
340 341 2.950309 GGCACGACTATACCTCTCAGAA 59.050 50.000 0.00 0.00 0.00 3.02
341 342 2.172930 AGGCACGACTATACCTCTCAGA 59.827 50.000 0.00 0.00 0.00 3.27
342 343 2.550606 GAGGCACGACTATACCTCTCAG 59.449 54.545 0.00 0.00 44.41 3.35
343 344 2.573369 GAGGCACGACTATACCTCTCA 58.427 52.381 0.00 0.00 44.41 3.27
347 348 2.299521 GTGAGAGGCACGACTATACCT 58.700 52.381 0.00 0.00 37.83 3.08
348 349 2.778187 GTGAGAGGCACGACTATACC 57.222 55.000 0.00 0.00 37.83 2.73
360 361 2.159653 CGATTTTTGCTTCCGTGAGAGG 60.160 50.000 0.00 0.00 0.00 3.69
361 362 2.480419 ACGATTTTTGCTTCCGTGAGAG 59.520 45.455 0.00 0.00 31.85 3.20
362 363 2.489971 ACGATTTTTGCTTCCGTGAGA 58.510 42.857 0.00 0.00 31.85 3.27
363 364 2.969443 ACGATTTTTGCTTCCGTGAG 57.031 45.000 0.00 0.00 31.85 3.51
366 367 0.039527 GGCACGATTTTTGCTTCCGT 60.040 50.000 0.00 0.00 40.07 4.69
367 368 0.240945 AGGCACGATTTTTGCTTCCG 59.759 50.000 0.00 0.00 40.07 4.30
368 369 2.438868 AAGGCACGATTTTTGCTTCC 57.561 45.000 0.00 0.00 40.07 3.46
369 370 2.405025 CGAAAGGCACGATTTTTGCTTC 59.595 45.455 0.00 0.00 40.07 3.86
370 371 2.393764 CGAAAGGCACGATTTTTGCTT 58.606 42.857 0.00 0.00 40.07 3.91
371 372 1.930371 GCGAAAGGCACGATTTTTGCT 60.930 47.619 0.00 0.00 42.87 3.91
372 373 0.434628 GCGAAAGGCACGATTTTTGC 59.565 50.000 0.00 0.00 42.87 3.68
373 374 0.702383 CGCGAAAGGCACGATTTTTG 59.298 50.000 0.00 0.00 43.84 2.44
374 375 0.589223 TCGCGAAAGGCACGATTTTT 59.411 45.000 6.20 0.00 43.84 1.94
375 376 0.589223 TTCGCGAAAGGCACGATTTT 59.411 45.000 21.14 0.00 43.84 1.82
376 377 0.589223 TTTCGCGAAAGGCACGATTT 59.411 45.000 29.22 0.00 43.84 2.17
377 378 0.165944 CTTTCGCGAAAGGCACGATT 59.834 50.000 40.75 0.00 42.96 3.34
378 379 1.787847 CTTTCGCGAAAGGCACGAT 59.212 52.632 40.75 0.00 42.96 3.73
379 380 3.240203 CTTTCGCGAAAGGCACGA 58.760 55.556 40.75 18.40 42.96 4.35
386 387 6.259638 ACACATTTTTCTTACTTTCGCGAAA 58.740 32.000 30.47 30.47 0.00 3.46
387 388 5.812652 ACACATTTTTCTTACTTTCGCGAA 58.187 33.333 19.38 19.38 0.00 4.70
388 389 5.412526 ACACATTTTTCTTACTTTCGCGA 57.587 34.783 3.71 3.71 0.00 5.87
389 390 6.490877 AAACACATTTTTCTTACTTTCGCG 57.509 33.333 0.00 0.00 0.00 5.87
390 391 7.671827 ACAAAACACATTTTTCTTACTTTCGC 58.328 30.769 0.00 0.00 35.79 4.70
416 417 3.005684 TCGTGCCTCTCGGTAACTAAAAA 59.994 43.478 0.00 0.00 0.00 1.94
417 418 2.557924 TCGTGCCTCTCGGTAACTAAAA 59.442 45.455 0.00 0.00 0.00 1.52
418 419 2.095059 GTCGTGCCTCTCGGTAACTAAA 60.095 50.000 0.00 0.00 0.00 1.85
419 420 1.470098 GTCGTGCCTCTCGGTAACTAA 59.530 52.381 0.00 0.00 0.00 2.24
420 421 1.089920 GTCGTGCCTCTCGGTAACTA 58.910 55.000 0.00 0.00 0.00 2.24
421 422 1.593296 GGTCGTGCCTCTCGGTAACT 61.593 60.000 0.00 0.00 0.00 2.24
422 423 1.153881 GGTCGTGCCTCTCGGTAAC 60.154 63.158 0.00 0.00 0.00 2.50
423 424 1.180456 TTGGTCGTGCCTCTCGGTAA 61.180 55.000 1.06 0.00 38.35 2.85
424 425 1.592400 CTTGGTCGTGCCTCTCGGTA 61.592 60.000 1.06 0.00 38.35 4.02
425 426 2.915659 TTGGTCGTGCCTCTCGGT 60.916 61.111 1.06 0.00 38.35 4.69
426 427 2.125912 CTTGGTCGTGCCTCTCGG 60.126 66.667 1.06 0.00 38.35 4.63
427 428 2.811317 GCTTGGTCGTGCCTCTCG 60.811 66.667 1.06 0.00 38.35 4.04
428 429 2.435059 GGCTTGGTCGTGCCTCTC 60.435 66.667 0.00 0.00 45.26 3.20
433 434 3.414700 CGAGTGGCTTGGTCGTGC 61.415 66.667 0.00 0.00 0.00 5.34
434 435 3.414700 GCGAGTGGCTTGGTCGTG 61.415 66.667 0.00 0.00 39.11 4.35
435 436 3.865929 CTGCGAGTGGCTTGGTCGT 62.866 63.158 0.00 0.00 44.05 4.34
436 437 3.114616 CTGCGAGTGGCTTGGTCG 61.115 66.667 0.00 0.00 44.05 4.79
437 438 1.294659 CTTCTGCGAGTGGCTTGGTC 61.295 60.000 0.00 0.00 44.05 4.02
438 439 1.302033 CTTCTGCGAGTGGCTTGGT 60.302 57.895 0.00 0.00 44.05 3.67
439 440 2.684843 GCTTCTGCGAGTGGCTTGG 61.685 63.158 0.00 0.00 44.05 3.61
440 441 1.509644 TTGCTTCTGCGAGTGGCTTG 61.510 55.000 0.00 0.00 44.05 4.01
441 442 0.819259 TTTGCTTCTGCGAGTGGCTT 60.819 50.000 0.00 0.00 44.05 4.35
442 443 0.819259 TTTTGCTTCTGCGAGTGGCT 60.819 50.000 0.00 0.00 44.05 4.75
443 444 0.661483 GTTTTGCTTCTGCGAGTGGC 60.661 55.000 0.00 0.00 43.34 5.01
444 445 0.947244 AGTTTTGCTTCTGCGAGTGG 59.053 50.000 0.00 0.00 43.34 4.00
445 446 1.331756 ACAGTTTTGCTTCTGCGAGTG 59.668 47.619 0.00 0.00 43.34 3.51
446 447 1.331756 CACAGTTTTGCTTCTGCGAGT 59.668 47.619 0.00 0.00 43.34 4.18
447 448 1.923316 GCACAGTTTTGCTTCTGCGAG 60.923 52.381 0.00 0.00 43.34 5.03
448 449 0.029300 GCACAGTTTTGCTTCTGCGA 59.971 50.000 0.00 0.00 43.34 5.10
449 450 2.498892 GCACAGTTTTGCTTCTGCG 58.501 52.632 0.00 0.00 43.34 5.18
456 457 5.291614 TCTTTCATGAAAAGCACAGTTTTGC 59.708 36.000 20.82 0.00 43.48 3.68
457 458 6.890663 TCTTTCATGAAAAGCACAGTTTTG 57.109 33.333 20.82 5.93 43.48 2.44
458 459 7.903995 TTTCTTTCATGAAAAGCACAGTTTT 57.096 28.000 20.82 0.00 43.48 2.43
459 460 7.903995 TTTTCTTTCATGAAAAGCACAGTTT 57.096 28.000 20.82 0.00 43.48 2.66
460 461 7.903995 TTTTTCTTTCATGAAAAGCACAGTT 57.096 28.000 20.82 0.00 43.79 3.16
461 462 9.598517 TTATTTTTCTTTCATGAAAAGCACAGT 57.401 25.926 20.82 8.14 43.79 3.55
480 481 9.669887 TGGCATGCTCTCAATTTATTTATTTTT 57.330 25.926 18.92 0.00 0.00 1.94
481 482 9.101655 GTGGCATGCTCTCAATTTATTTATTTT 57.898 29.630 18.92 0.00 0.00 1.82
482 483 8.480501 AGTGGCATGCTCTCAATTTATTTATTT 58.519 29.630 18.92 0.00 0.00 1.40
483 484 8.015185 AGTGGCATGCTCTCAATTTATTTATT 57.985 30.769 18.92 0.00 0.00 1.40
484 485 7.592885 AGTGGCATGCTCTCAATTTATTTAT 57.407 32.000 18.92 0.00 0.00 1.40
485 486 7.259882 CAAGTGGCATGCTCTCAATTTATTTA 58.740 34.615 18.92 0.00 0.00 1.40
486 487 5.927281 AGTGGCATGCTCTCAATTTATTT 57.073 34.783 18.92 0.00 0.00 1.40
487 488 5.394883 CCAAGTGGCATGCTCTCAATTTATT 60.395 40.000 18.92 0.00 0.00 1.40
488 489 4.098960 CCAAGTGGCATGCTCTCAATTTAT 59.901 41.667 18.92 0.00 0.00 1.40
489 490 3.444742 CCAAGTGGCATGCTCTCAATTTA 59.555 43.478 18.92 0.00 0.00 1.40
490 491 2.232941 CCAAGTGGCATGCTCTCAATTT 59.767 45.455 18.92 3.01 0.00 1.82
491 492 1.822990 CCAAGTGGCATGCTCTCAATT 59.177 47.619 18.92 9.90 0.00 2.32
492 493 1.272313 ACCAAGTGGCATGCTCTCAAT 60.272 47.619 18.92 3.36 39.32 2.57
493 494 0.111061 ACCAAGTGGCATGCTCTCAA 59.889 50.000 18.92 0.00 39.32 3.02
494 495 0.983467 TACCAAGTGGCATGCTCTCA 59.017 50.000 18.92 4.09 39.32 3.27
495 496 1.945394 CATACCAAGTGGCATGCTCTC 59.055 52.381 18.92 8.73 39.32 3.20
496 497 2.048444 CATACCAAGTGGCATGCTCT 57.952 50.000 18.92 13.41 39.32 4.09
500 501 1.945394 GAGAGCATACCAAGTGGCATG 59.055 52.381 6.22 6.22 41.01 4.06
501 502 1.561076 TGAGAGCATACCAAGTGGCAT 59.439 47.619 0.00 0.00 39.32 4.40
502 503 0.983467 TGAGAGCATACCAAGTGGCA 59.017 50.000 0.00 0.00 39.32 4.92
503 504 1.661341 CTGAGAGCATACCAAGTGGC 58.339 55.000 0.00 0.00 39.32 5.01
504 505 1.661341 GCTGAGAGCATACCAAGTGG 58.339 55.000 0.00 0.00 41.89 4.00
505 506 1.661341 GGCTGAGAGCATACCAAGTG 58.339 55.000 0.00 0.00 44.75 3.16
506 507 0.543749 GGGCTGAGAGCATACCAAGT 59.456 55.000 0.00 0.00 44.75 3.16
507 508 0.531532 CGGGCTGAGAGCATACCAAG 60.532 60.000 0.00 0.00 44.75 3.61
508 509 1.522092 CGGGCTGAGAGCATACCAA 59.478 57.895 0.00 0.00 44.75 3.67
509 510 3.094062 GCGGGCTGAGAGCATACCA 62.094 63.158 0.00 0.00 44.75 3.25
510 511 2.280457 GCGGGCTGAGAGCATACC 60.280 66.667 0.00 0.00 44.75 2.73
511 512 2.280457 GGCGGGCTGAGAGCATAC 60.280 66.667 0.00 0.00 44.75 2.39
512 513 0.759060 TAAGGCGGGCTGAGAGCATA 60.759 55.000 4.27 0.00 44.75 3.14
513 514 1.626356 TTAAGGCGGGCTGAGAGCAT 61.626 55.000 4.27 0.00 44.75 3.79
514 515 1.836999 TTTAAGGCGGGCTGAGAGCA 61.837 55.000 4.27 0.00 44.75 4.26
515 516 0.464554 ATTTAAGGCGGGCTGAGAGC 60.465 55.000 4.27 0.00 41.46 4.09
516 517 1.303309 CATTTAAGGCGGGCTGAGAG 58.697 55.000 4.27 0.00 0.00 3.20
517 518 0.618458 ACATTTAAGGCGGGCTGAGA 59.382 50.000 4.27 0.00 0.00 3.27
518 519 1.017387 GACATTTAAGGCGGGCTGAG 58.983 55.000 4.27 0.00 0.00 3.35
519 520 0.393808 GGACATTTAAGGCGGGCTGA 60.394 55.000 4.27 0.00 0.00 4.26
520 521 1.384222 GGGACATTTAAGGCGGGCTG 61.384 60.000 4.27 0.00 0.00 4.85
521 522 1.076995 GGGACATTTAAGGCGGGCT 60.077 57.895 0.00 0.00 0.00 5.19
522 523 0.683179 AAGGGACATTTAAGGCGGGC 60.683 55.000 0.00 0.00 0.00 6.13
523 524 1.102978 CAAGGGACATTTAAGGCGGG 58.897 55.000 0.00 0.00 0.00 6.13
524 525 1.102978 CCAAGGGACATTTAAGGCGG 58.897 55.000 0.00 0.00 0.00 6.13
525 526 1.102978 CCCAAGGGACATTTAAGGCG 58.897 55.000 0.00 0.00 37.50 5.52
526 527 2.379005 CTCCCAAGGGACATTTAAGGC 58.621 52.381 3.04 0.00 39.76 4.35
527 528 2.950418 GCCTCCCAAGGGACATTTAAGG 60.950 54.545 3.04 3.37 43.58 2.69
528 529 2.024941 AGCCTCCCAAGGGACATTTAAG 60.025 50.000 3.04 0.00 43.58 1.85
529 530 2.000048 AGCCTCCCAAGGGACATTTAA 59.000 47.619 3.04 0.00 43.58 1.52
530 531 1.564348 GAGCCTCCCAAGGGACATTTA 59.436 52.381 3.04 0.00 43.58 1.40
531 532 0.332972 GAGCCTCCCAAGGGACATTT 59.667 55.000 3.04 0.00 43.58 2.32
532 533 1.575447 GGAGCCTCCCAAGGGACATT 61.575 60.000 3.04 0.00 43.58 2.71
533 534 2.003548 GGAGCCTCCCAAGGGACAT 61.004 63.158 3.04 0.00 43.58 3.06
534 535 2.610859 GGAGCCTCCCAAGGGACA 60.611 66.667 3.04 0.00 43.58 4.02
548 549 4.856607 GGAGCGCTCGTTCGGGAG 62.857 72.222 29.81 0.00 37.11 4.30
550 551 4.856607 GAGGAGCGCTCGTTCGGG 62.857 72.222 31.01 0.00 0.00 5.14
551 552 2.890847 ATTGAGGAGCGCTCGTTCGG 62.891 60.000 31.01 0.00 0.00 4.30
552 553 1.078759 AATTGAGGAGCGCTCGTTCG 61.079 55.000 31.01 0.00 0.00 3.95
553 554 1.855360 CTAATTGAGGAGCGCTCGTTC 59.145 52.381 31.01 27.74 0.00 3.95
554 555 1.204941 ACTAATTGAGGAGCGCTCGTT 59.795 47.619 31.01 21.74 0.00 3.85
555 556 0.818296 ACTAATTGAGGAGCGCTCGT 59.182 50.000 30.96 30.96 0.00 4.18
556 557 1.927895 AACTAATTGAGGAGCGCTCG 58.072 50.000 29.81 16.23 0.00 5.03
557 558 3.684788 TCAAAACTAATTGAGGAGCGCTC 59.315 43.478 29.38 29.38 34.50 5.03
558 559 3.674997 TCAAAACTAATTGAGGAGCGCT 58.325 40.909 11.27 11.27 34.50 5.92
566 567 9.391006 AGTGTGTTTAGACTCAAAACTAATTGA 57.609 29.630 3.22 0.00 37.64 2.57
567 568 9.651718 GAGTGTGTTTAGACTCAAAACTAATTG 57.348 33.333 0.00 0.00 44.35 2.32
568 569 8.837389 GGAGTGTGTTTAGACTCAAAACTAATT 58.163 33.333 6.87 0.00 46.15 1.40
569 570 7.990886 TGGAGTGTGTTTAGACTCAAAACTAAT 59.009 33.333 6.87 0.00 46.15 1.73
570 571 7.279313 GTGGAGTGTGTTTAGACTCAAAACTAA 59.721 37.037 6.87 0.00 46.15 2.24
571 572 6.759827 GTGGAGTGTGTTTAGACTCAAAACTA 59.240 38.462 6.87 0.00 46.15 2.24
572 573 5.585047 GTGGAGTGTGTTTAGACTCAAAACT 59.415 40.000 6.87 0.00 46.15 2.66
573 574 5.585047 AGTGGAGTGTGTTTAGACTCAAAAC 59.415 40.000 6.87 2.85 46.15 2.43
574 575 5.741011 AGTGGAGTGTGTTTAGACTCAAAA 58.259 37.500 6.87 0.00 46.15 2.44
575 576 5.353394 AGTGGAGTGTGTTTAGACTCAAA 57.647 39.130 6.87 0.00 46.15 2.69
576 577 5.353394 AAGTGGAGTGTGTTTAGACTCAA 57.647 39.130 6.87 0.00 46.15 3.02
577 578 5.353394 AAAGTGGAGTGTGTTTAGACTCA 57.647 39.130 6.87 0.00 46.15 3.41
578 579 7.656137 TCAATAAAGTGGAGTGTGTTTAGACTC 59.344 37.037 0.00 0.00 44.24 3.36
618 619 5.346011 CCGTCGGATCTACATTGTATTCATG 59.654 44.000 4.91 0.00 0.00 3.07
620 621 4.581409 TCCGTCGGATCTACATTGTATTCA 59.419 41.667 10.71 0.00 0.00 2.57
626 627 5.769367 TCTTAATCCGTCGGATCTACATTG 58.231 41.667 26.54 12.54 42.27 2.82
627 628 6.401047 TTCTTAATCCGTCGGATCTACATT 57.599 37.500 26.54 13.40 42.27 2.71
639 640 4.389374 CCATATGTGGCTTCTTAATCCGT 58.611 43.478 1.24 0.00 39.01 4.69
671 672 4.156008 CGCTAAACATACTCTGGGCTTTTT 59.844 41.667 0.00 0.00 0.00 1.94
674 675 2.500098 TCGCTAAACATACTCTGGGCTT 59.500 45.455 0.00 0.00 0.00 4.35
675 676 2.101582 CTCGCTAAACATACTCTGGGCT 59.898 50.000 0.00 0.00 0.00 5.19
679 680 3.444703 AGCCTCGCTAAACATACTCTG 57.555 47.619 0.00 0.00 36.99 3.35
683 684 2.408704 CGCATAGCCTCGCTAAACATAC 59.591 50.000 0.00 0.00 44.62 2.39
684 685 2.672714 CGCATAGCCTCGCTAAACATA 58.327 47.619 0.00 0.00 44.62 2.29
685 686 1.502231 CGCATAGCCTCGCTAAACAT 58.498 50.000 0.00 0.00 44.62 2.71
686 687 1.151777 GCGCATAGCCTCGCTAAACA 61.152 55.000 0.30 0.00 44.62 2.83
703 704 5.051153 GGAGGAGAAACTAATCTTAAGGCG 58.949 45.833 1.85 0.00 0.00 5.52
708 709 9.101325 TCTTTGAAGGAGGAGAAACTAATCTTA 57.899 33.333 0.00 0.00 0.00 2.10
730 731 7.171678 CAGTTCTCTCGTTGTTCCTTTATCTTT 59.828 37.037 0.00 0.00 0.00 2.52
736 737 4.138487 ACAGTTCTCTCGTTGTTCCTTT 57.862 40.909 0.00 0.00 0.00 3.11
740 741 6.421202 ACATCTTAACAGTTCTCTCGTTGTTC 59.579 38.462 0.00 0.00 35.55 3.18
745 746 7.175293 AGTCTTACATCTTAACAGTTCTCTCGT 59.825 37.037 0.00 0.00 0.00 4.18
746 747 7.531716 AGTCTTACATCTTAACAGTTCTCTCG 58.468 38.462 0.00 0.00 0.00 4.04
773 774 9.348476 GGAAGAAAGAAGCATTATTAAGGAGAT 57.652 33.333 0.00 0.00 0.00 2.75
790 791 2.762535 GGATGTCACCGGAAGAAAGA 57.237 50.000 9.46 0.00 0.00 2.52
800 801 2.358939 AACTAACGACGGATGTCACC 57.641 50.000 0.00 0.00 45.80 4.02
801 802 2.410730 CCAAACTAACGACGGATGTCAC 59.589 50.000 0.00 0.00 45.80 3.67
802 803 2.296752 TCCAAACTAACGACGGATGTCA 59.703 45.455 0.00 0.00 45.80 3.58
803 804 2.950433 TCCAAACTAACGACGGATGTC 58.050 47.619 0.00 0.00 41.91 3.06
804 805 3.389925 TTCCAAACTAACGACGGATGT 57.610 42.857 0.00 0.00 0.00 3.06
808 809 4.212636 AGTGAAATTCCAAACTAACGACGG 59.787 41.667 0.00 0.00 0.00 4.79
809 810 5.338614 AGTGAAATTCCAAACTAACGACG 57.661 39.130 0.00 0.00 0.00 5.12
810 811 8.340443 ACTAAAGTGAAATTCCAAACTAACGAC 58.660 33.333 0.00 0.00 0.00 4.34
813 814 9.244799 CCAACTAAAGTGAAATTCCAAACTAAC 57.755 33.333 0.00 0.00 0.00 2.34
814 815 8.417884 CCCAACTAAAGTGAAATTCCAAACTAA 58.582 33.333 0.00 0.00 0.00 2.24
816 817 6.382859 ACCCAACTAAAGTGAAATTCCAAACT 59.617 34.615 0.00 0.00 0.00 2.66
818 819 6.800072 ACCCAACTAAAGTGAAATTCCAAA 57.200 33.333 0.00 0.00 0.00 3.28
820 821 5.303333 GGAACCCAACTAAAGTGAAATTCCA 59.697 40.000 9.77 0.00 32.55 3.53
821 822 5.538813 AGGAACCCAACTAAAGTGAAATTCC 59.461 40.000 7.76 7.76 32.49 3.01
822 823 6.650427 AGGAACCCAACTAAAGTGAAATTC 57.350 37.500 0.00 0.00 0.00 2.17
823 824 8.721133 ATTAGGAACCCAACTAAAGTGAAATT 57.279 30.769 0.00 0.00 33.36 1.82
824 825 7.947890 TGATTAGGAACCCAACTAAAGTGAAAT 59.052 33.333 0.00 0.00 33.36 2.17
826 827 6.843752 TGATTAGGAACCCAACTAAAGTGAA 58.156 36.000 0.00 0.00 33.36 3.18
827 828 6.442541 TGATTAGGAACCCAACTAAAGTGA 57.557 37.500 0.00 0.00 33.36 3.41
828 829 5.123979 GCTGATTAGGAACCCAACTAAAGTG 59.876 44.000 0.00 0.00 33.36 3.16
829 830 5.014228 AGCTGATTAGGAACCCAACTAAAGT 59.986 40.000 0.00 0.00 33.36 2.66
830 831 5.355350 CAGCTGATTAGGAACCCAACTAAAG 59.645 44.000 8.42 0.00 33.36 1.85
831 832 5.013704 TCAGCTGATTAGGAACCCAACTAAA 59.986 40.000 13.74 0.00 33.36 1.85
832 833 4.534500 TCAGCTGATTAGGAACCCAACTAA 59.466 41.667 13.74 0.00 34.07 2.24
833 834 4.101114 TCAGCTGATTAGGAACCCAACTA 58.899 43.478 13.74 0.00 0.00 2.24
834 835 2.912956 TCAGCTGATTAGGAACCCAACT 59.087 45.455 13.74 0.00 0.00 3.16
835 836 3.350219 TCAGCTGATTAGGAACCCAAC 57.650 47.619 13.74 0.00 0.00 3.77
837 838 2.103094 CGATCAGCTGATTAGGAACCCA 59.897 50.000 29.26 0.00 34.37 4.51
838 839 2.548920 CCGATCAGCTGATTAGGAACCC 60.549 54.545 32.06 17.80 35.83 4.11
839 840 2.548920 CCCGATCAGCTGATTAGGAACC 60.549 54.545 34.88 20.54 35.83 3.62
840 841 2.760374 CCCGATCAGCTGATTAGGAAC 58.240 52.381 34.88 21.10 35.83 3.62
841 842 1.070758 GCCCGATCAGCTGATTAGGAA 59.929 52.381 34.88 11.63 35.83 3.36
844 845 0.321122 GGGCCCGATCAGCTGATTAG 60.321 60.000 29.26 23.90 34.37 1.73
845 846 1.053835 TGGGCCCGATCAGCTGATTA 61.054 55.000 29.26 2.92 34.37 1.75
848 849 1.925285 ATTTGGGCCCGATCAGCTGA 61.925 55.000 20.79 20.79 0.00 4.26
851 852 2.196245 GGATTTGGGCCCGATCAGC 61.196 63.158 29.11 13.98 0.00 4.26
852 853 1.103398 GTGGATTTGGGCCCGATCAG 61.103 60.000 29.11 0.00 0.00 2.90
854 855 2.186826 CGTGGATTTGGGCCCGATC 61.187 63.158 23.41 23.41 0.00 3.69
855 856 1.628238 TACGTGGATTTGGGCCCGAT 61.628 55.000 19.37 14.25 0.00 4.18
857 858 2.110352 GTACGTGGATTTGGGCCCG 61.110 63.158 19.37 4.54 0.00 6.13
858 859 2.110352 CGTACGTGGATTTGGGCCC 61.110 63.158 17.59 17.59 0.00 5.80
860 861 1.303091 AAGCGTACGTGGATTTGGGC 61.303 55.000 17.90 0.00 0.00 5.36
862 863 1.393539 CTGAAGCGTACGTGGATTTGG 59.606 52.381 17.90 0.00 0.00 3.28
863 864 1.393539 CCTGAAGCGTACGTGGATTTG 59.606 52.381 17.90 1.92 0.00 2.32
864 865 1.722011 CCTGAAGCGTACGTGGATTT 58.278 50.000 17.90 4.16 0.00 2.17
866 867 1.153628 GCCTGAAGCGTACGTGGAT 60.154 57.895 17.90 0.33 0.00 3.41
867 868 2.260434 GCCTGAAGCGTACGTGGA 59.740 61.111 17.90 0.00 0.00 4.02
868 869 2.813908 GGCCTGAAGCGTACGTGG 60.814 66.667 17.90 12.08 45.17 4.94
869 870 2.813908 GGGCCTGAAGCGTACGTG 60.814 66.667 17.90 2.61 45.17 4.49
882 883 0.534427 GACAATAGGTTAGGCGGGCC 60.534 60.000 0.18 0.18 0.00 5.80
883 884 0.534427 GGACAATAGGTTAGGCGGGC 60.534 60.000 0.00 0.00 0.00 6.13
884 885 0.834612 TGGACAATAGGTTAGGCGGG 59.165 55.000 0.00 0.00 0.00 6.13
885 886 1.474498 GGTGGACAATAGGTTAGGCGG 60.474 57.143 0.00 0.00 0.00 6.13
886 887 1.485066 AGGTGGACAATAGGTTAGGCG 59.515 52.381 0.00 0.00 0.00 5.52
888 889 3.028850 TCGAGGTGGACAATAGGTTAGG 58.971 50.000 0.00 0.00 0.00 2.69
889 890 3.952323 TCTCGAGGTGGACAATAGGTTAG 59.048 47.826 13.56 0.00 0.00 2.34
890 891 3.972133 TCTCGAGGTGGACAATAGGTTA 58.028 45.455 13.56 0.00 0.00 2.85
891 892 2.816411 TCTCGAGGTGGACAATAGGTT 58.184 47.619 13.56 0.00 0.00 3.50
892 893 2.526888 TCTCGAGGTGGACAATAGGT 57.473 50.000 13.56 0.00 0.00 3.08
893 894 5.730296 AATATCTCGAGGTGGACAATAGG 57.270 43.478 13.56 0.00 0.00 2.57
896 897 6.240549 AGAAAATATCTCGAGGTGGACAAT 57.759 37.500 13.56 0.00 30.46 2.71
897 898 5.677319 AGAAAATATCTCGAGGTGGACAA 57.323 39.130 13.56 0.00 30.46 3.18
898 899 5.677319 AAGAAAATATCTCGAGGTGGACA 57.323 39.130 13.56 0.00 37.42 4.02
899 900 8.145122 AGATAAAGAAAATATCTCGAGGTGGAC 58.855 37.037 13.56 0.00 35.68 4.02
900 901 8.251383 AGATAAAGAAAATATCTCGAGGTGGA 57.749 34.615 13.56 0.00 35.68 4.02
901 902 9.632807 CTAGATAAAGAAAATATCTCGAGGTGG 57.367 37.037 13.56 0.00 39.96 4.61
946 1247 4.447342 CGAGGGCAAGGGGGCAAT 62.447 66.667 0.00 0.00 45.66 3.56
1060 1369 0.547712 CCTGGGGGTGAGGAGAAGAA 60.548 60.000 0.00 0.00 31.48 2.52
1096 1405 2.046217 GAACGGGGTTCTGAGGGC 60.046 66.667 1.41 0.00 39.23 5.19
1161 1470 2.380410 CGTGTACTGCACCGGCTTC 61.380 63.158 0.00 0.00 44.97 3.86
1246 1555 4.778143 GCACGGGCGAAGGGATGT 62.778 66.667 0.00 0.00 0.00 3.06
1319 1629 1.998550 GACGCACGCAGATACACACG 61.999 60.000 0.00 0.00 0.00 4.49
1320 1630 0.732880 AGACGCACGCAGATACACAC 60.733 55.000 0.00 0.00 0.00 3.82
1321 1631 0.732538 CAGACGCACGCAGATACACA 60.733 55.000 0.00 0.00 0.00 3.72
1322 1632 1.991430 CAGACGCACGCAGATACAC 59.009 57.895 0.00 0.00 0.00 2.90
1323 1633 1.805539 GCAGACGCACGCAGATACA 60.806 57.895 0.00 0.00 38.36 2.29
1324 1634 2.849966 CGCAGACGCACGCAGATAC 61.850 63.158 0.00 0.00 38.40 2.24
1325 1635 2.579518 CGCAGACGCACGCAGATA 60.580 61.111 0.00 0.00 38.40 1.98
1326 1636 4.724602 ACGCAGACGCACGCAGAT 62.725 61.111 0.00 0.00 45.53 2.90
1331 1641 1.341369 TAATCACACGCAGACGCACG 61.341 55.000 0.00 0.00 45.53 5.34
1423 1735 2.517609 GGTACCTACTCCCAGCAGG 58.482 63.158 4.06 0.00 35.45 4.85
1455 1769 2.675423 TACACCCTGCGAGCGAGT 60.675 61.111 0.00 0.00 0.00 4.18
1467 1781 2.632377 ACTGCAGCACATATGTACACC 58.368 47.619 15.27 0.00 0.00 4.16
1573 1888 1.608109 CTAAACACCACACAGCATGCA 59.392 47.619 21.98 0.00 42.53 3.96
1581 1896 1.732259 CCATCGAGCTAAACACCACAC 59.268 52.381 0.00 0.00 0.00 3.82
1613 1958 8.336080 GCATACTAAGAAGGTTACAATTACAGC 58.664 37.037 0.00 0.00 0.00 4.40
1721 2068 1.916181 AGGTTGACTTAGATGTGGGGG 59.084 52.381 0.00 0.00 0.00 5.40
2235 2764 1.676529 TCGATGAACACGGAGGAGATC 59.323 52.381 0.00 0.00 0.00 2.75
2751 3501 8.527810 CCTGTACCAAAATACAACACCAAATAT 58.472 33.333 0.00 0.00 34.68 1.28
2753 3503 6.325286 ACCTGTACCAAAATACAACACCAAAT 59.675 34.615 0.00 0.00 34.68 2.32
2755 3505 5.202004 ACCTGTACCAAAATACAACACCAA 58.798 37.500 0.00 0.00 34.68 3.67
2756 3506 4.794334 ACCTGTACCAAAATACAACACCA 58.206 39.130 0.00 0.00 34.68 4.17
2757 3507 5.777850 AACCTGTACCAAAATACAACACC 57.222 39.130 0.00 0.00 34.68 4.16
2759 3509 9.751542 CAATTAAACCTGTACCAAAATACAACA 57.248 29.630 0.00 0.00 34.68 3.33
2807 3687 8.192774 AGTAATTCATGTATGATTGTGGCTTTG 58.807 33.333 0.00 0.00 36.56 2.77
2861 3741 7.014230 CCCAGGAAATGTTTACTTCAAGAAGAA 59.986 37.037 16.16 4.19 40.79 2.52
2966 3847 3.307339 GCTTTGGGGATGTATTTTGCCAA 60.307 43.478 0.00 0.00 0.00 4.52
2985 3866 8.546322 TCAGCATTCATATTGATAGATAGGCTT 58.454 33.333 0.00 0.00 0.00 4.35
3011 3892 5.726980 TTTGCTTCATACAAGAAAGGCAT 57.273 34.783 0.00 0.00 31.49 4.40
3128 4010 5.555017 AGACATGGTCCATGATATGCTAAC 58.445 41.667 33.99 14.44 43.81 2.34
3189 4071 1.737793 GACAGCGGGTATTCAACAAGG 59.262 52.381 0.00 0.00 0.00 3.61
3199 4081 3.292492 TCAGAATAGAGACAGCGGGTA 57.708 47.619 0.00 0.00 0.00 3.69
3234 4116 7.596749 AGTACATGACAAATTAAGAAGACCG 57.403 36.000 0.00 0.00 0.00 4.79
3280 4162 2.086869 CAAGCGGTCCAATCTTCACAT 58.913 47.619 0.00 0.00 0.00 3.21
3320 4202 2.956987 ACAAGAATGTGCCGCAGC 59.043 55.556 0.00 0.00 38.69 5.25
3554 4436 2.209273 TCAACACGTTCCATGTGACTG 58.791 47.619 3.09 1.06 37.29 3.51
3726 4608 8.602472 ACTTCCAGTATGATTTCTAGAGAAGT 57.398 34.615 9.61 9.61 39.69 3.01
3783 4665 7.572523 ATTTGTTGTTCATGAGTTCTTCAGA 57.427 32.000 0.00 0.00 39.68 3.27
3791 4673 8.991243 CAAATCCATATTTGTTGTTCATGAGT 57.009 30.769 0.00 0.00 44.62 3.41
3811 4693 0.750911 CCTGGCCTCCTGAGCAAATC 60.751 60.000 3.32 0.00 0.00 2.17
4103 4994 6.899393 AACATTCTGTAGGCTGATTTTCAA 57.101 33.333 0.00 0.00 0.00 2.69
4110 5001 5.118990 GCTCAATAACATTCTGTAGGCTGA 58.881 41.667 0.00 0.00 0.00 4.26
4126 5017 3.633525 GACAGCCATCCAAATGCTCAATA 59.366 43.478 0.00 0.00 0.00 1.90
4284 5176 7.606456 AGAAGAAAAGCTCGTGTATCCATTTTA 59.394 33.333 0.00 0.00 0.00 1.52
4602 6271 1.149987 TACAAACGTTCGCCATGACC 58.850 50.000 0.00 0.00 0.00 4.02
4653 6322 2.492881 CAAATGTGAAGTATGGCCAGCA 59.507 45.455 13.05 0.00 0.00 4.41
4716 6433 7.993183 ACATATAAATTGAGATCGTCCCTTTGT 59.007 33.333 0.00 0.00 0.00 2.83
5201 8092 9.967451 TCCAATTTGAGTAAACCATGAGTTATA 57.033 29.630 0.00 0.00 37.88 0.98
5267 8165 9.048446 GTGTCATTAACCTACAGAAGTACAAAA 57.952 33.333 0.00 0.00 0.00 2.44
5319 8217 4.400567 GGAAAGGAGGAATGAAATGGTCTG 59.599 45.833 0.00 0.00 0.00 3.51
5360 8258 9.461312 AGGACAACTAAGTATTTATTTGCATGA 57.539 29.630 0.00 0.00 34.52 3.07
5728 8627 6.754702 ACAGTATCTTTACTCTGCGTCTTA 57.245 37.500 0.00 0.00 36.50 2.10
5873 8772 7.319646 AGCAGACTGTTCTAGATCTAGTTTTG 58.680 38.462 25.54 17.36 34.84 2.44
5955 8854 3.039011 ACTATTATCGCCACCTTCCTGT 58.961 45.455 0.00 0.00 0.00 4.00
5984 8883 5.549742 AAACCAGCCATGAATTGAAAAGA 57.450 34.783 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.