Multiple sequence alignment - TraesCS3B01G047500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G047500 chr3B 100.000 7233 0 0 1001 8233 24013678 24006446 0.000000e+00 13357.0
1 TraesCS3B01G047500 chr3B 100.000 799 0 0 1 799 24014678 24013880 0.000000e+00 1476.0
2 TraesCS3B01G047500 chr3B 86.842 456 40 5 7737 8181 9362849 9363295 7.420000e-135 492.0
3 TraesCS3B01G047500 chr3B 87.387 444 36 4 7749 8181 27179869 27179435 7.420000e-135 492.0
4 TraesCS3B01G047500 chr3A 95.795 5374 175 25 1693 7039 19998923 20004272 0.000000e+00 8624.0
5 TraesCS3B01G047500 chr3A 90.157 508 37 9 52 554 19992168 19992667 0.000000e+00 649.0
6 TraesCS3B01G047500 chr3A 87.847 576 30 21 1001 1549 19998363 19998925 2.510000e-179 640.0
7 TraesCS3B01G047500 chr3A 94.314 299 12 2 7020 7317 20004285 20004579 3.500000e-123 453.0
8 TraesCS3B01G047500 chr3A 93.985 266 10 2 7317 7577 20004813 20005077 1.660000e-106 398.0
9 TraesCS3B01G047500 chr3A 83.206 131 20 2 2303 2431 430527144 430527274 1.450000e-22 119.0
10 TraesCS3B01G047500 chr3A 94.737 57 1 2 1 56 19991877 19991932 4.090000e-13 87.9
11 TraesCS3B01G047500 chr3D 95.987 4784 131 28 2571 7313 16622556 16617793 0.000000e+00 7714.0
12 TraesCS3B01G047500 chr3D 90.331 1510 57 33 1001 2458 16624023 16622551 0.000000e+00 1897.0
13 TraesCS3B01G047500 chr3D 87.947 755 48 12 52 789 16624810 16624082 0.000000e+00 850.0
14 TraesCS3B01G047500 chr3D 86.015 522 57 8 52 564 593565 594079 5.620000e-151 545.0
15 TraesCS3B01G047500 chr3D 94.828 232 11 1 7347 7577 16617511 16617280 2.180000e-95 361.0
16 TraesCS3B01G047500 chr3D 100.000 56 0 0 1 56 16625101 16625046 4.060000e-18 104.0
17 TraesCS3B01G047500 chr3D 90.244 82 3 3 7344 7420 18303128 18303047 1.460000e-17 102.0
18 TraesCS3B01G047500 chr3D 98.214 56 1 0 1 56 593273 593328 1.890000e-16 99.0
19 TraesCS3B01G047500 chr3D 97.561 41 1 0 7317 7357 16617555 16617515 4.120000e-08 71.3
20 TraesCS3B01G047500 chr3D 100.000 28 0 0 2911 2938 114002684 114002711 1.500000e-02 52.8
21 TraesCS3B01G047500 chr3D 100.000 28 0 0 2911 2938 114003086 114003113 1.500000e-02 52.8
22 TraesCS3B01G047500 chr4A 90.442 2804 199 35 2933 5704 583150852 583153618 0.000000e+00 3629.0
23 TraesCS3B01G047500 chr4A 90.690 870 61 15 5701 6565 583153672 583154526 0.000000e+00 1140.0
24 TraesCS3B01G047500 chr4A 83.576 755 95 20 6563 7313 583154561 583155290 0.000000e+00 680.0
25 TraesCS3B01G047500 chr4A 83.826 575 45 21 1015 1566 583150258 583150807 3.430000e-138 503.0
26 TraesCS3B01G047500 chr4A 91.463 82 2 3 7344 7420 583958868 583958949 3.140000e-19 108.0
27 TraesCS3B01G047500 chr4A 90.244 82 3 3 7344 7420 583954602 583954683 1.460000e-17 102.0
28 TraesCS3B01G047500 chr4B 89.871 2478 159 36 3278 5704 29662589 29665025 0.000000e+00 3101.0
29 TraesCS3B01G047500 chr4B 89.873 1106 72 8 3422 4511 29713981 29712900 0.000000e+00 1386.0
30 TraesCS3B01G047500 chr4B 89.578 1113 72 22 4605 5688 29712902 29711805 0.000000e+00 1373.0
31 TraesCS3B01G047500 chr4B 90.160 874 62 16 5702 6565 29665081 29665940 0.000000e+00 1116.0
32 TraesCS3B01G047500 chr4B 90.230 870 63 12 5702 6558 29711560 29710700 0.000000e+00 1116.0
33 TraesCS3B01G047500 chr4B 88.015 534 46 9 2933 3458 29714507 29713984 4.220000e-172 616.0
34 TraesCS3B01G047500 chr4B 85.992 514 58 7 52 558 479035934 479036440 9.400000e-149 538.0
35 TraesCS3B01G047500 chr4B 83.363 565 62 20 6563 7120 29710658 29710119 2.060000e-135 494.0
36 TraesCS3B01G047500 chr4B 99.231 260 2 0 7737 7996 619602715 619602974 3.480000e-128 470.0
37 TraesCS3B01G047500 chr4B 85.882 425 48 7 6563 6979 29665975 29666395 7.580000e-120 442.0
38 TraesCS3B01G047500 chr4B 98.780 246 3 0 7988 8233 619603128 619603373 9.810000e-119 438.0
39 TraesCS3B01G047500 chr4B 82.903 503 51 25 1078 1570 29715026 29714549 3.550000e-113 420.0
40 TraesCS3B01G047500 chr4B 84.286 280 17 4 4085 4361 29662132 29662387 1.770000e-61 248.0
41 TraesCS3B01G047500 chr4B 91.270 126 7 2 3158 3279 29662382 29662507 1.420000e-37 169.0
42 TraesCS3B01G047500 chr4B 92.982 57 3 1 1 56 479035655 479035711 1.900000e-11 82.4
43 TraesCS3B01G047500 chr4D 88.811 1716 108 36 2931 4619 17864124 17862466 0.000000e+00 2028.0
44 TraesCS3B01G047500 chr4D 88.228 1580 133 38 5701 7251 17861252 17859697 0.000000e+00 1838.0
45 TraesCS3B01G047500 chr4D 91.431 1097 73 14 4615 5704 17862388 17861306 0.000000e+00 1485.0
46 TraesCS3B01G047500 chr4D 86.420 324 21 7 1248 1570 17864466 17864165 4.760000e-87 333.0
47 TraesCS3B01G047500 chr4D 83.069 189 12 10 1001 1169 17865115 17864927 3.980000e-33 154.0
48 TraesCS3B01G047500 chr6A 99.022 511 5 0 7723 8233 57688767 57689277 0.000000e+00 917.0
49 TraesCS3B01G047500 chr6A 90.244 82 3 3 7344 7420 201760569 201760488 1.460000e-17 102.0
50 TraesCS3B01G047500 chr6B 98.793 497 6 0 7737 8233 693800755 693800259 0.000000e+00 885.0
51 TraesCS3B01G047500 chr6B 98.189 497 9 0 7737 8233 449774358 449773862 0.000000e+00 869.0
52 TraesCS3B01G047500 chr6B 87.061 456 39 5 7737 8181 688769032 688768586 1.600000e-136 497.0
53 TraesCS3B01G047500 chr6B 91.463 82 2 3 7344 7420 144958806 144958725 3.140000e-19 108.0
54 TraesCS3B01G047500 chr6B 100.000 46 0 0 8188 8233 688766702 688766657 1.470000e-12 86.1
55 TraesCS3B01G047500 chr2B 95.775 497 6 1 7737 8233 689775763 689775282 0.000000e+00 787.0
56 TraesCS3B01G047500 chr1B 97.130 453 13 0 7729 8181 538163728 538163276 0.000000e+00 765.0
57 TraesCS3B01G047500 chr1B 84.261 521 58 12 53 564 189867068 189867573 3.450000e-133 486.0
58 TraesCS3B01G047500 chr1B 86.755 453 41 6 6864 7315 637358533 637358099 3.450000e-133 486.0
59 TraesCS3B01G047500 chr1B 82.175 331 20 14 6525 6853 637367308 637367015 1.770000e-61 248.0
60 TraesCS3B01G047500 chr1B 87.209 86 3 8 8153 8233 538163212 538163130 3.160000e-14 91.6
61 TraesCS3B01G047500 chr1B 94.444 54 3 0 637 690 189870628 189870681 5.300000e-12 84.2
62 TraesCS3B01G047500 chr1B 80.702 114 15 4 584 690 189865980 189865867 1.900000e-11 82.4
63 TraesCS3B01G047500 chr1B 100.000 29 0 0 6844 6872 637359164 637359136 4.000000e-03 54.7
64 TraesCS3B01G047500 chr5B 95.105 429 17 1 7757 8181 712464436 712464008 0.000000e+00 673.0
65 TraesCS3B01G047500 chr2D 88.619 536 39 11 2931 3454 408774267 408774792 4.190000e-177 632.0
66 TraesCS3B01G047500 chr2D 87.008 508 54 6 52 552 49361135 49360633 5.580000e-156 562.0
67 TraesCS3B01G047500 chr2D 93.151 73 5 0 2862 2934 569681093 569681021 3.140000e-19 108.0
68 TraesCS3B01G047500 chr2D 90.244 82 3 3 7344 7420 465154568 465154487 1.460000e-17 102.0
69 TraesCS3B01G047500 chr2D 100.000 40 0 0 1 40 49361422 49361383 3.190000e-09 75.0
70 TraesCS3B01G047500 chr2A 87.500 536 45 12 2931 3454 606699181 606698656 4.250000e-167 599.0
71 TraesCS3B01G047500 chr2A 83.500 200 21 8 1732 1926 758656252 758656444 8.490000e-40 176.0
72 TraesCS3B01G047500 chr5D 85.632 522 57 9 52 564 400002628 400002116 4.370000e-147 532.0
73 TraesCS3B01G047500 chr5D 97.297 37 1 0 5933 5969 399980754 399980718 6.900000e-06 63.9
74 TraesCS3B01G047500 chr7D 85.057 522 60 9 52 564 46372736 46373248 4.410000e-142 516.0
75 TraesCS3B01G047500 chr7D 83.716 522 67 12 52 564 46269248 46268736 2.080000e-130 477.0
76 TraesCS3B01G047500 chr7D 87.727 220 20 4 350 564 46164062 46163845 4.930000e-62 250.0
77 TraesCS3B01G047500 chr7D 81.579 114 12 6 584 690 46154391 46154280 1.470000e-12 86.1
78 TraesCS3B01G047500 chr7D 80.172 116 11 9 584 690 46270332 46270444 8.860000e-10 76.8
79 TraesCS3B01G047500 chrUn 94.684 301 14 2 7881 8181 333923236 333922938 4.500000e-127 466.0
80 TraesCS3B01G047500 chrUn 94.684 301 14 2 7881 8181 333939749 333939451 4.500000e-127 466.0
81 TraesCS3B01G047500 chrUn 97.826 46 1 0 8188 8233 390094956 390095001 6.850000e-11 80.5
82 TraesCS3B01G047500 chrUn 97.826 46 1 0 8188 8233 390109797 390109842 6.850000e-11 80.5
83 TraesCS3B01G047500 chr1D 85.714 329 25 5 6991 7317 462295802 462295494 2.220000e-85 327.0
84 TraesCS3B01G047500 chr1D 91.525 236 20 0 6637 6872 462296690 462296455 7.970000e-85 326.0
85 TraesCS3B01G047500 chr1D 89.855 69 5 1 5935 6001 298570210 298570142 4.090000e-13 87.9
86 TraesCS3B01G047500 chr1D 87.324 71 9 0 2858 2928 39959009 39959079 1.900000e-11 82.4
87 TraesCS3B01G047500 chr5A 87.719 171 18 2 7718 7885 540383478 540383648 6.520000e-46 196.0
88 TraesCS3B01G047500 chr7A 91.463 82 2 3 7344 7420 577213090 577213009 3.140000e-19 108.0
89 TraesCS3B01G047500 chr1A 88.889 81 7 1 5923 6001 372239154 372239074 1.890000e-16 99.0
90 TraesCS3B01G047500 chr7B 88.136 59 7 0 2861 2919 514267774 514267832 4.120000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G047500 chr3B 24006446 24014678 8232 True 7416.500000 13357 100.000000 1 8233 2 chr3B.!!$R2 8232
1 TraesCS3B01G047500 chr3A 19998363 20005077 6714 False 2528.750000 8624 92.985250 1001 7577 4 chr3A.!!$F3 6576
2 TraesCS3B01G047500 chr3A 19991877 19992667 790 False 368.450000 649 92.447000 1 554 2 chr3A.!!$F2 553
3 TraesCS3B01G047500 chr3D 16617280 16625101 7821 True 1832.883333 7714 94.442333 1 7577 6 chr3D.!!$R2 7576
4 TraesCS3B01G047500 chr3D 593273 594079 806 False 322.000000 545 92.114500 1 564 2 chr3D.!!$F1 563
5 TraesCS3B01G047500 chr4A 583150258 583155290 5032 False 1488.000000 3629 87.133500 1015 7313 4 chr4A.!!$F3 6298
6 TraesCS3B01G047500 chr4B 29662132 29666395 4263 False 1015.200000 3101 88.293800 3158 6979 5 chr4B.!!$F1 3821
7 TraesCS3B01G047500 chr4B 29710119 29715026 4907 True 900.833333 1386 87.327000 1078 7120 6 chr4B.!!$R1 6042
8 TraesCS3B01G047500 chr4B 619602715 619603373 658 False 454.000000 470 99.005500 7737 8233 2 chr4B.!!$F3 496
9 TraesCS3B01G047500 chr4B 479035655 479036440 785 False 310.200000 538 89.487000 1 558 2 chr4B.!!$F2 557
10 TraesCS3B01G047500 chr4D 17859697 17865115 5418 True 1167.600000 2028 87.591800 1001 7251 5 chr4D.!!$R1 6250
11 TraesCS3B01G047500 chr6A 57688767 57689277 510 False 917.000000 917 99.022000 7723 8233 1 chr6A.!!$F1 510
12 TraesCS3B01G047500 chr6B 688766657 688769032 2375 True 291.550000 497 93.530500 7737 8233 2 chr6B.!!$R4 496
13 TraesCS3B01G047500 chr1B 538163130 538163728 598 True 428.300000 765 92.169500 7729 8233 2 chr1B.!!$R3 504
14 TraesCS3B01G047500 chr1B 189867068 189870681 3613 False 285.100000 486 89.352500 53 690 2 chr1B.!!$F1 637
15 TraesCS3B01G047500 chr1B 637358099 637359164 1065 True 270.350000 486 93.377500 6844 7315 2 chr1B.!!$R4 471
16 TraesCS3B01G047500 chr2D 408774267 408774792 525 False 632.000000 632 88.619000 2931 3454 1 chr2D.!!$F1 523
17 TraesCS3B01G047500 chr2D 49360633 49361422 789 True 318.500000 562 93.504000 1 552 2 chr2D.!!$R3 551
18 TraesCS3B01G047500 chr2A 606698656 606699181 525 True 599.000000 599 87.500000 2931 3454 1 chr2A.!!$R1 523
19 TraesCS3B01G047500 chr5D 400002116 400002628 512 True 532.000000 532 85.632000 52 564 1 chr5D.!!$R2 512
20 TraesCS3B01G047500 chr7D 46372736 46373248 512 False 516.000000 516 85.057000 52 564 1 chr7D.!!$F2 512
21 TraesCS3B01G047500 chr7D 46268736 46269248 512 True 477.000000 477 83.716000 52 564 1 chr7D.!!$R3 512
22 TraesCS3B01G047500 chr1D 462295494 462296690 1196 True 326.500000 327 88.619500 6637 7317 2 chr1D.!!$R2 680

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
395 650 0.036388 TCGGTCAGTGGCCTTGAATC 60.036 55.000 12.95 3.69 0.00 2.52 F
1622 2487 0.168788 AAATGTCCATGCTTGCGACG 59.831 50.000 12.97 0.00 0.00 5.12 F
1656 2521 0.033601 GGAGAGAGCCAGAGAGGACA 60.034 60.000 0.00 0.00 41.22 4.02 F
2049 2936 0.388649 CTAGACAGGGTGTGCGTGAC 60.389 60.000 0.00 0.00 0.00 3.67 F
2800 3698 0.748005 TTCAGGAGCCCAATAAGCGC 60.748 55.000 0.00 0.00 34.64 5.92 F
4011 5076 0.413832 TACCCTCCCTTGCTCTCTGT 59.586 55.000 0.00 0.00 0.00 3.41 F
4081 5146 1.134401 AGCGGGTGGATTGTGTATCTG 60.134 52.381 0.00 0.00 33.53 2.90 F
4874 8260 1.943340 GCGCCTTCCTGGATAAGAAAG 59.057 52.381 0.00 0.00 38.35 2.62 F
6106 9762 1.222567 GTCCCCATGGTATCCCAGTT 58.777 55.000 11.73 0.00 46.15 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1637 2502 0.033601 TGTCCTCTCTGGCTCTCTCC 60.034 60.000 0.00 0.0 35.26 3.71 R
2542 3433 0.322997 TAAACAACCAGCCCCCATCG 60.323 55.000 0.00 0.0 0.00 3.84 R
2594 3486 1.148273 AAGCAGGAAAGCGTGACCA 59.852 52.632 0.00 0.0 40.15 4.02 R
2874 3781 3.305064 GCAAGGTGCGTTTCTCCAATTTA 60.305 43.478 0.00 0.0 31.71 1.40 R
4740 8126 1.463444 GCAACTTACAACTACCTGGCG 59.537 52.381 0.00 0.0 0.00 5.69 R
5046 8434 0.655733 AACAAACCACGCTGAACTCG 59.344 50.000 0.00 0.0 0.00 4.18 R
5468 8860 1.827969 AGCTCTGCAATACCTTCGTCT 59.172 47.619 0.00 0.0 0.00 4.18 R
6635 10335 0.391130 TAGCCTTGGCAACTACGCTG 60.391 55.000 14.54 0.0 34.33 5.18 R
7588 12211 0.179073 CCGTGGATGTGTGGAGGATC 60.179 60.000 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
168 412 7.121907 AGAGAAGGCAATCAGATTTTAGTTTCC 59.878 37.037 0.00 0.00 0.00 3.13
223 467 9.807921 ATTGTTCTTCTAAATGGAGGAAACTAA 57.192 29.630 0.00 0.00 44.43 2.24
228 472 2.124277 AATGGAGGAAACTAACGCCC 57.876 50.000 0.00 0.00 44.43 6.13
273 519 5.111293 TGCATGACAGATATGTGTAGTGTG 58.889 41.667 5.33 4.19 0.00 3.82
276 522 3.116300 GACAGATATGTGTAGTGTGCCG 58.884 50.000 5.33 0.00 0.00 5.69
284 530 2.606519 TAGTGTGCCGGCCCTCTT 60.607 61.111 26.77 8.44 0.00 2.85
304 550 4.706476 TCTTAGGTGAATTCTTGGCATTGG 59.294 41.667 7.05 0.00 0.00 3.16
314 560 4.314522 TCTTGGCATTGGGAGTGATAAA 57.685 40.909 0.00 0.00 0.00 1.40
345 600 5.627499 TGCTTCTTTATGACAATGTGTCC 57.373 39.130 5.96 0.00 46.40 4.02
348 603 3.669536 TCTTTATGACAATGTGTCCGCA 58.330 40.909 5.96 0.00 46.40 5.69
371 626 9.643652 CGCATAAGCTTTTTATTTTGTTTTTGA 57.356 25.926 3.20 0.00 39.10 2.69
395 650 0.036388 TCGGTCAGTGGCCTTGAATC 60.036 55.000 12.95 3.69 0.00 2.52
442 699 3.745799 TGAATTCCACTTTGCTTCCGTA 58.254 40.909 2.27 0.00 0.00 4.02
456 713 5.674525 TGCTTCCGTATGATGAATTCTCTT 58.325 37.500 7.05 3.38 0.00 2.85
461 718 4.051237 CGTATGATGAATTCTCTTCGCCA 58.949 43.478 7.05 0.00 0.00 5.69
614 879 4.342092 ACAAAGGTCTTTTCCAAGGATGTG 59.658 41.667 0.00 0.00 0.00 3.21
617 882 5.003096 AGGTCTTTTCCAAGGATGTGAAT 57.997 39.130 0.00 0.00 0.00 2.57
622 887 2.028420 TCCAAGGATGTGAATGCGAG 57.972 50.000 0.00 0.00 0.00 5.03
627 892 3.610040 AGGATGTGAATGCGAGTTGTA 57.390 42.857 0.00 0.00 0.00 2.41
628 893 3.262420 AGGATGTGAATGCGAGTTGTAC 58.738 45.455 0.00 0.00 0.00 2.90
629 894 2.351726 GGATGTGAATGCGAGTTGTACC 59.648 50.000 0.00 0.00 0.00 3.34
630 895 1.803334 TGTGAATGCGAGTTGTACCC 58.197 50.000 0.00 0.00 0.00 3.69
631 896 1.346395 TGTGAATGCGAGTTGTACCCT 59.654 47.619 0.00 0.00 0.00 4.34
632 897 2.224426 TGTGAATGCGAGTTGTACCCTT 60.224 45.455 0.00 0.00 0.00 3.95
633 898 2.159627 GTGAATGCGAGTTGTACCCTTG 59.840 50.000 0.00 0.00 0.00 3.61
634 899 2.037902 TGAATGCGAGTTGTACCCTTGA 59.962 45.455 0.00 0.00 0.00 3.02
635 900 2.386661 ATGCGAGTTGTACCCTTGAG 57.613 50.000 0.00 0.00 0.00 3.02
636 901 0.320374 TGCGAGTTGTACCCTTGAGG 59.680 55.000 0.00 0.00 43.78 3.86
637 902 0.606604 GCGAGTTGTACCCTTGAGGA 59.393 55.000 0.00 0.00 39.89 3.71
638 903 1.001633 GCGAGTTGTACCCTTGAGGAA 59.998 52.381 0.00 0.00 39.89 3.36
639 904 2.549349 GCGAGTTGTACCCTTGAGGAAA 60.549 50.000 0.00 0.00 39.89 3.13
640 905 3.064931 CGAGTTGTACCCTTGAGGAAAC 58.935 50.000 0.00 0.00 39.89 2.78
641 906 3.409570 GAGTTGTACCCTTGAGGAAACC 58.590 50.000 0.00 0.00 39.89 3.27
642 907 2.107726 AGTTGTACCCTTGAGGAAACCC 59.892 50.000 0.00 0.00 39.89 4.11
699 964 3.010420 GTGGCTCAAAACATCTCCTACC 58.990 50.000 0.00 0.00 0.00 3.18
707 972 1.207791 ACATCTCCTACCAAGCCCAG 58.792 55.000 0.00 0.00 0.00 4.45
752 1026 1.781786 TCCCTCTTATCGCAGCTCTT 58.218 50.000 0.00 0.00 0.00 2.85
754 1028 1.270041 CCCTCTTATCGCAGCTCTTCC 60.270 57.143 0.00 0.00 0.00 3.46
776 1050 2.757508 CGCCTCCCTCTGCTCTGA 60.758 66.667 0.00 0.00 0.00 3.27
779 1053 1.001503 CCTCCCTCTGCTCTGACCT 59.998 63.158 0.00 0.00 0.00 3.85
789 1063 1.424493 GCTCTGACCTCCAAATCGCG 61.424 60.000 0.00 0.00 0.00 5.87
790 1064 0.173481 CTCTGACCTCCAAATCGCGA 59.827 55.000 13.09 13.09 0.00 5.87
793 1067 1.814169 GACCTCCAAATCGCGACCC 60.814 63.158 12.93 0.00 0.00 4.46
1179 1473 2.101770 CCTCGGCCTCGACGTAAC 59.898 66.667 0.00 0.00 40.88 2.50
1180 1474 2.693762 CCTCGGCCTCGACGTAACA 61.694 63.158 0.00 0.00 40.88 2.41
1181 1475 1.513586 CTCGGCCTCGACGTAACAC 60.514 63.158 0.00 0.00 40.88 3.32
1182 1476 1.919956 CTCGGCCTCGACGTAACACT 61.920 60.000 0.00 0.00 40.88 3.55
1218 1563 2.294078 CGCTCCCCTCCTTCCACTT 61.294 63.158 0.00 0.00 0.00 3.16
1247 1927 1.745653 CCCGAATTTTCCTTCTCAGGC 59.254 52.381 0.00 0.00 40.58 4.85
1248 1928 2.436417 CCGAATTTTCCTTCTCAGGCA 58.564 47.619 0.00 0.00 40.58 4.75
1307 1987 2.734591 GCGATAGGGATGTCGGCA 59.265 61.111 0.00 0.00 38.24 5.69
1497 2181 4.384940 GTGCCTCTAATTCATCCTCCTTC 58.615 47.826 0.00 0.00 0.00 3.46
1535 2223 7.759886 TGCTAGATACTTTTACTGCTACTGTTG 59.240 37.037 0.00 0.00 0.00 3.33
1559 2408 2.223923 TGTTTGGCTGCAATGTACAACC 60.224 45.455 0.00 0.00 0.00 3.77
1563 2412 1.613437 GGCTGCAATGTACAACCTGTT 59.387 47.619 0.00 0.00 0.00 3.16
1567 2416 4.298332 CTGCAATGTACAACCTGTTTTCC 58.702 43.478 0.00 0.00 0.00 3.13
1571 2436 3.495434 TGTACAACCTGTTTTCCGGAT 57.505 42.857 4.15 0.00 0.00 4.18
1580 2445 4.157840 ACCTGTTTTCCGGATTAGATTTGC 59.842 41.667 4.15 0.00 0.00 3.68
1581 2446 4.157656 CCTGTTTTCCGGATTAGATTTGCA 59.842 41.667 4.15 0.00 0.00 4.08
1584 2449 5.941058 TGTTTTCCGGATTAGATTTGCACTA 59.059 36.000 4.15 0.00 0.00 2.74
1593 2458 7.441157 CGGATTAGATTTGCACTAGTTAATCCA 59.559 37.037 25.69 11.11 42.31 3.41
1594 2459 9.120538 GGATTAGATTTGCACTAGTTAATCCAA 57.879 33.333 23.48 15.06 42.02 3.53
1597 2462 9.515226 TTAGATTTGCACTAGTTAATCCAAACT 57.485 29.630 14.20 10.80 42.31 2.66
1610 2475 8.088365 AGTTAATCCAAACTAGCAAAAATGTCC 58.912 33.333 0.00 0.00 37.93 4.02
1611 2476 6.418057 AATCCAAACTAGCAAAAATGTCCA 57.582 33.333 0.00 0.00 0.00 4.02
1612 2477 6.610075 ATCCAAACTAGCAAAAATGTCCAT 57.390 33.333 0.00 0.00 0.00 3.41
1613 2478 5.782047 TCCAAACTAGCAAAAATGTCCATG 58.218 37.500 0.00 0.00 0.00 3.66
1614 2479 4.389687 CCAAACTAGCAAAAATGTCCATGC 59.610 41.667 0.00 0.00 39.06 4.06
1616 2481 5.473066 AACTAGCAAAAATGTCCATGCTT 57.527 34.783 4.30 0.00 46.36 3.91
1617 2482 4.813027 ACTAGCAAAAATGTCCATGCTTG 58.187 39.130 4.30 5.56 46.36 4.01
1618 2483 2.419667 AGCAAAAATGTCCATGCTTGC 58.580 42.857 14.27 14.27 46.36 4.01
1619 2484 1.127213 GCAAAAATGTCCATGCTTGCG 59.873 47.619 9.49 0.00 35.93 4.85
1620 2485 2.674954 CAAAAATGTCCATGCTTGCGA 58.325 42.857 0.00 0.00 0.00 5.10
1621 2486 2.352503 AAAATGTCCATGCTTGCGAC 57.647 45.000 11.71 11.71 0.00 5.19
1622 2487 0.168788 AAATGTCCATGCTTGCGACG 59.831 50.000 12.97 0.00 0.00 5.12
1623 2488 1.647545 AATGTCCATGCTTGCGACGG 61.648 55.000 12.97 0.00 0.00 4.79
1624 2489 3.499737 GTCCATGCTTGCGACGGG 61.500 66.667 0.00 0.00 0.00 5.28
1651 2516 2.441164 GCCGGAGAGAGCCAGAGA 60.441 66.667 5.05 0.00 0.00 3.10
1652 2517 2.489275 GCCGGAGAGAGCCAGAGAG 61.489 68.421 5.05 0.00 0.00 3.20
1653 2518 1.827789 CCGGAGAGAGCCAGAGAGG 60.828 68.421 0.00 0.00 41.84 3.69
1654 2519 1.225983 CGGAGAGAGCCAGAGAGGA 59.774 63.158 0.00 0.00 41.22 3.71
1655 2520 1.101049 CGGAGAGAGCCAGAGAGGAC 61.101 65.000 0.00 0.00 41.22 3.85
1656 2521 0.033601 GGAGAGAGCCAGAGAGGACA 60.034 60.000 0.00 0.00 41.22 4.02
1657 2522 1.411501 GGAGAGAGCCAGAGAGGACAT 60.412 57.143 0.00 0.00 41.22 3.06
1658 2523 1.682854 GAGAGAGCCAGAGAGGACATG 59.317 57.143 0.00 0.00 41.22 3.21
1659 2524 1.287442 AGAGAGCCAGAGAGGACATGA 59.713 52.381 0.00 0.00 41.22 3.07
1660 2525 2.091166 AGAGAGCCAGAGAGGACATGAT 60.091 50.000 0.00 0.00 41.22 2.45
1661 2526 2.699846 GAGAGCCAGAGAGGACATGATT 59.300 50.000 0.00 0.00 41.22 2.57
1662 2527 3.894427 GAGAGCCAGAGAGGACATGATTA 59.106 47.826 0.00 0.00 41.22 1.75
1663 2528 3.896888 AGAGCCAGAGAGGACATGATTAG 59.103 47.826 0.00 0.00 41.22 1.73
1664 2529 3.640967 GAGCCAGAGAGGACATGATTAGT 59.359 47.826 0.00 0.00 41.22 2.24
1665 2530 4.036518 AGCCAGAGAGGACATGATTAGTT 58.963 43.478 0.00 0.00 41.22 2.24
1666 2531 4.100808 AGCCAGAGAGGACATGATTAGTTC 59.899 45.833 0.00 0.00 41.22 3.01
1667 2532 4.100808 GCCAGAGAGGACATGATTAGTTCT 59.899 45.833 0.00 0.00 41.22 3.01
1668 2533 5.738783 GCCAGAGAGGACATGATTAGTTCTC 60.739 48.000 0.00 3.32 41.10 2.87
1669 2534 5.362143 CCAGAGAGGACATGATTAGTTCTCA 59.638 44.000 0.00 0.00 42.85 3.27
1670 2535 6.127225 CCAGAGAGGACATGATTAGTTCTCAA 60.127 42.308 0.00 0.00 42.85 3.02
1671 2536 6.756074 CAGAGAGGACATGATTAGTTCTCAAC 59.244 42.308 0.00 0.00 42.85 3.18
1672 2537 6.438741 AGAGAGGACATGATTAGTTCTCAACA 59.561 38.462 0.00 0.00 42.85 3.33
1673 2538 6.638610 AGAGGACATGATTAGTTCTCAACAG 58.361 40.000 0.00 0.00 42.85 3.16
1674 2539 5.181748 AGGACATGATTAGTTCTCAACAGC 58.818 41.667 0.00 0.00 0.00 4.40
1675 2540 5.046014 AGGACATGATTAGTTCTCAACAGCT 60.046 40.000 0.00 0.00 0.00 4.24
1676 2541 6.155221 AGGACATGATTAGTTCTCAACAGCTA 59.845 38.462 0.00 0.00 0.00 3.32
1677 2542 6.478344 GGACATGATTAGTTCTCAACAGCTAG 59.522 42.308 0.00 0.00 0.00 3.42
1678 2543 5.814705 ACATGATTAGTTCTCAACAGCTAGC 59.185 40.000 6.62 6.62 0.00 3.42
1679 2544 5.667539 TGATTAGTTCTCAACAGCTAGCT 57.332 39.130 12.68 12.68 0.00 3.32
1680 2545 6.775594 TGATTAGTTCTCAACAGCTAGCTA 57.224 37.500 18.86 0.00 0.00 3.32
1681 2546 6.800543 TGATTAGTTCTCAACAGCTAGCTAG 58.199 40.000 18.86 16.84 0.00 3.42
1682 2547 6.378564 TGATTAGTTCTCAACAGCTAGCTAGT 59.621 38.462 18.86 14.90 0.00 2.57
1683 2548 4.448537 AGTTCTCAACAGCTAGCTAGTG 57.551 45.455 18.86 17.74 0.00 2.74
1684 2549 4.082845 AGTTCTCAACAGCTAGCTAGTGA 58.917 43.478 18.86 20.82 0.00 3.41
1685 2550 4.524714 AGTTCTCAACAGCTAGCTAGTGAA 59.475 41.667 18.86 17.89 0.00 3.18
1686 2551 5.011125 AGTTCTCAACAGCTAGCTAGTGAAA 59.989 40.000 18.86 15.47 0.00 2.69
1687 2552 5.667539 TCTCAACAGCTAGCTAGTGAAAT 57.332 39.130 18.86 0.51 0.00 2.17
1688 2553 6.042638 TCTCAACAGCTAGCTAGTGAAATT 57.957 37.500 18.86 7.22 0.00 1.82
1689 2554 6.467677 TCTCAACAGCTAGCTAGTGAAATTT 58.532 36.000 18.86 6.80 0.00 1.82
1690 2555 6.369890 TCTCAACAGCTAGCTAGTGAAATTTG 59.630 38.462 18.86 16.00 0.00 2.32
1691 2556 6.230472 TCAACAGCTAGCTAGTGAAATTTGA 58.770 36.000 18.86 17.53 0.00 2.69
1692 2557 6.881065 TCAACAGCTAGCTAGTGAAATTTGAT 59.119 34.615 18.86 0.00 0.00 2.57
1693 2558 6.674694 ACAGCTAGCTAGTGAAATTTGATG 57.325 37.500 18.86 2.97 0.00 3.07
1694 2559 5.065731 ACAGCTAGCTAGTGAAATTTGATGC 59.934 40.000 18.86 3.76 0.00 3.91
1710 2575 2.830370 GCCCCCATCCGAAAGCTG 60.830 66.667 0.00 0.00 0.00 4.24
1807 2688 4.558095 GCAGGTAAGGAGCATTGCATTATG 60.558 45.833 11.91 4.91 0.00 1.90
1815 2696 4.820716 GGAGCATTGCATTATGAAGACTCT 59.179 41.667 11.91 0.00 0.00 3.24
1816 2697 5.277876 GGAGCATTGCATTATGAAGACTCTG 60.278 44.000 11.91 0.00 0.00 3.35
1817 2698 5.191426 AGCATTGCATTATGAAGACTCTGT 58.809 37.500 11.91 0.00 0.00 3.41
1818 2699 5.066117 AGCATTGCATTATGAAGACTCTGTG 59.934 40.000 11.91 0.00 0.00 3.66
1819 2700 5.163683 GCATTGCATTATGAAGACTCTGTGT 60.164 40.000 3.15 0.00 0.00 3.72
1820 2701 6.037500 GCATTGCATTATGAAGACTCTGTGTA 59.962 38.462 3.15 0.00 0.00 2.90
1821 2702 6.968131 TTGCATTATGAAGACTCTGTGTAC 57.032 37.500 0.00 0.00 0.00 2.90
1872 2757 5.702209 ATGTTTTCATAGCAAAAAGCCCAAG 59.298 36.000 0.00 0.00 38.95 3.61
1918 2803 5.220662 GCAATGCCCATACTTACGCATATAG 60.221 44.000 0.00 0.00 40.96 1.31
1971 2857 6.643770 TCTGTTATCACCGACTTTACTGAAAC 59.356 38.462 0.00 0.00 0.00 2.78
2049 2936 0.388649 CTAGACAGGGTGTGCGTGAC 60.389 60.000 0.00 0.00 0.00 3.67
2097 2984 2.238646 ACTTCCTTGGACGAATGCCATA 59.761 45.455 0.00 0.00 34.90 2.74
2109 2996 3.804325 CGAATGCCATAGTCGTCTCATTT 59.196 43.478 0.00 0.00 41.58 2.32
2120 3007 3.624861 GTCGTCTCATTTGCCATCAATCT 59.375 43.478 0.00 0.00 31.33 2.40
2150 3037 2.469162 GGATCCTCCAATCCTCCCC 58.531 63.158 3.84 0.00 41.78 4.81
2188 3075 5.092554 TCGCCATACCAAACAGAAGATAA 57.907 39.130 0.00 0.00 0.00 1.75
2201 3088 5.126067 ACAGAAGATAACACTTGCTGTTGT 58.874 37.500 0.35 0.00 43.38 3.32
2379 3267 2.272471 GCAGGGTTAGGGCAGTCC 59.728 66.667 0.00 0.00 0.00 3.85
2381 3269 1.908483 CAGGGTTAGGGCAGTCCTC 59.092 63.158 0.00 0.00 44.06 3.71
2401 3292 4.776322 CCAGCAATGGGTCGCGGA 62.776 66.667 6.13 0.00 0.00 5.54
2462 3353 0.965866 TTCAGGAGTGAGACGCCGAT 60.966 55.000 0.00 0.00 43.27 4.18
2500 3391 2.030562 AACGGGAAGTCGTGCAGG 59.969 61.111 0.00 0.00 43.07 4.85
2501 3392 2.504274 AACGGGAAGTCGTGCAGGA 61.504 57.895 4.68 4.68 43.07 3.86
2502 3393 2.125912 CGGGAAGTCGTGCAGGAG 60.126 66.667 9.83 0.00 0.00 3.69
2504 3395 2.435059 GGAAGTCGTGCAGGAGCC 60.435 66.667 9.83 8.13 41.13 4.70
2505 3396 2.343758 GAAGTCGTGCAGGAGCCA 59.656 61.111 9.83 0.00 41.13 4.75
2506 3397 2.029844 GAAGTCGTGCAGGAGCCAC 61.030 63.158 9.83 0.00 41.13 5.01
2507 3398 2.715532 GAAGTCGTGCAGGAGCCACA 62.716 60.000 9.83 0.00 41.13 4.17
2564 3456 0.902516 TGGGGGCTGGTTGTTTATGC 60.903 55.000 0.00 0.00 0.00 3.14
2592 3484 3.422796 AGTACGTGTGAAGGAGTCTGAT 58.577 45.455 0.00 0.00 0.00 2.90
2594 3486 1.964223 ACGTGTGAAGGAGTCTGATGT 59.036 47.619 0.00 0.00 0.00 3.06
2631 3528 3.181459 GCTTGTTTCCCTTTGGGCTTTTA 60.181 43.478 0.00 0.00 43.94 1.52
2799 3697 1.750193 TTTCAGGAGCCCAATAAGCG 58.250 50.000 0.00 0.00 34.64 4.68
2800 3698 0.748005 TTCAGGAGCCCAATAAGCGC 60.748 55.000 0.00 0.00 34.64 5.92
2900 3807 1.600413 GGAGAAACGCACCTTGCTTTG 60.600 52.381 0.00 0.00 42.25 2.77
2910 3817 4.749245 CACCTTGCTTTGTTAGTAGGTG 57.251 45.455 0.00 0.00 44.64 4.00
2974 3885 2.690840 ACCTTACTGGACAGTCCTTGT 58.309 47.619 20.82 19.42 44.55 3.16
2983 3894 4.710324 TGGACAGTCCTTGTTATCGTTTT 58.290 39.130 20.82 0.00 41.05 2.43
3420 4425 5.835257 GCATTTGCTAGCAATTTATCAGGA 58.165 37.500 29.72 12.70 38.21 3.86
3813 4878 9.627123 TCTAGTGCTTGTGGCTATATTATTTTT 57.373 29.630 0.00 0.00 42.39 1.94
4011 5076 0.413832 TACCCTCCCTTGCTCTCTGT 59.586 55.000 0.00 0.00 0.00 3.41
4050 5115 8.132362 ACTGTTAAGTTGCATTTGTATTTTCGA 58.868 29.630 0.00 0.00 30.14 3.71
4081 5146 1.134401 AGCGGGTGGATTGTGTATCTG 60.134 52.381 0.00 0.00 33.53 2.90
4515 7816 2.621055 TGCAGGTACAAATTTGACGCTT 59.379 40.909 24.64 4.36 0.00 4.68
4564 7865 3.290710 ACACTTGTTCAGCCAATTCTGT 58.709 40.909 0.00 0.00 35.63 3.41
4565 7866 3.701040 ACACTTGTTCAGCCAATTCTGTT 59.299 39.130 0.00 0.00 35.63 3.16
4740 8126 5.600696 CATGCTTAAATATGTGGTTTCCCC 58.399 41.667 0.00 0.00 0.00 4.81
4793 8179 7.241376 CGCTAAATTCCAGAAAATAGAAACGT 58.759 34.615 6.89 0.00 0.00 3.99
4874 8260 1.943340 GCGCCTTCCTGGATAAGAAAG 59.057 52.381 0.00 0.00 38.35 2.62
5032 8420 5.202765 TCATCCTTTACGTACCTACATCCA 58.797 41.667 0.00 0.00 0.00 3.41
5034 8422 6.325545 TCATCCTTTACGTACCTACATCCAAT 59.674 38.462 0.00 0.00 0.00 3.16
5035 8423 5.909477 TCCTTTACGTACCTACATCCAATG 58.091 41.667 0.00 0.00 0.00 2.82
5046 8434 4.823989 CCTACATCCAATGGAAGGACAATC 59.176 45.833 12.13 0.00 38.89 2.67
5180 8568 9.698309 TTGTTTTCAAGTTCAATGTAAGTCAAA 57.302 25.926 0.00 0.00 34.60 2.69
5181 8569 9.134734 TGTTTTCAAGTTCAATGTAAGTCAAAC 57.865 29.630 0.00 0.00 0.00 2.93
5183 8571 6.055231 TCAAGTTCAATGTAAGTCAAACGG 57.945 37.500 0.00 0.00 0.00 4.44
5380 8771 9.507280 CAAAATTCTCGTTATGCAACATCTTAT 57.493 29.630 0.00 0.00 34.05 1.73
5468 8860 9.831682 TGGTCATAGGTGGTTAACAGATATATA 57.168 33.333 8.10 0.00 0.00 0.86
5639 9053 7.961326 ACTTCTCCTATTGCCAAATAAACAT 57.039 32.000 0.00 0.00 0.00 2.71
5858 9503 5.462398 CGCTACAAACAGAGGAATATGTACC 59.538 44.000 0.00 0.00 0.00 3.34
5927 9579 2.578021 ACTGCAATACTGGAATCCCTGT 59.422 45.455 0.00 0.00 45.16 4.00
6001 9655 3.442625 GCTCGCCTTACCACCTTAAAAAT 59.557 43.478 0.00 0.00 0.00 1.82
6106 9762 1.222567 GTCCCCATGGTATCCCAGTT 58.777 55.000 11.73 0.00 46.15 3.16
6474 10136 3.841643 TCGAGCCTTTAAAGTTAGGACG 58.158 45.455 14.03 8.89 35.66 4.79
6518 10180 5.304686 TGTCATCCCACTTTTAGTGTTCT 57.695 39.130 6.13 0.00 44.50 3.01
6519 10181 6.428083 TGTCATCCCACTTTTAGTGTTCTA 57.572 37.500 6.13 0.00 44.50 2.10
6635 10335 0.819259 TTCAGTTGCTGTCACCTGCC 60.819 55.000 0.00 0.00 33.33 4.85
6710 10410 9.683069 GTTGAATTTCAGTAACATGTCATCTTT 57.317 29.630 0.00 0.00 0.00 2.52
7001 11323 2.162681 GGACTGGACTTCCATTGGTTG 58.837 52.381 1.86 0.00 46.46 3.77
7048 11403 3.084039 TGGCTTCTGTTTGCTGATTAGG 58.916 45.455 0.00 0.00 0.00 2.69
7162 11518 4.443457 CCTTGGATGTATCAGGTCGTGATT 60.443 45.833 12.96 0.00 44.05 2.57
7163 11519 4.322080 TGGATGTATCAGGTCGTGATTC 57.678 45.455 12.96 8.92 44.05 2.52
7164 11520 3.069586 TGGATGTATCAGGTCGTGATTCC 59.930 47.826 12.96 13.62 44.05 3.01
7206 11562 5.296780 TGGAATTTCTTGGATTATGTCTCGC 59.703 40.000 0.00 0.00 0.00 5.03
7219 11575 1.124702 GTCTCGCGTTAAGACCGACG 61.125 60.000 13.82 0.00 37.72 5.12
7247 11603 2.728690 TGAGCATTTGTCATTGCACC 57.271 45.000 10.03 3.59 41.35 5.01
7557 12180 3.078837 GGAAGAACCCGAGTAAATTGCA 58.921 45.455 0.00 0.00 0.00 4.08
7566 12189 4.082245 CCCGAGTAAATTGCAGAAAACCAT 60.082 41.667 0.00 0.00 0.00 3.55
7577 12200 3.184986 GCAGAAAACCATCACATTTGTGC 59.815 43.478 5.81 4.26 45.25 4.57
7578 12201 3.426191 CAGAAAACCATCACATTTGTGCG 59.574 43.478 5.81 0.16 45.25 5.34
7579 12202 3.317711 AGAAAACCATCACATTTGTGCGA 59.682 39.130 5.81 0.00 45.25 5.10
7580 12203 2.995466 AACCATCACATTTGTGCGAG 57.005 45.000 5.81 0.00 45.25 5.03
7581 12204 1.167851 ACCATCACATTTGTGCGAGG 58.832 50.000 5.81 9.38 45.25 4.63
7582 12205 1.271325 ACCATCACATTTGTGCGAGGA 60.271 47.619 17.08 0.00 45.25 3.71
7583 12206 1.399440 CCATCACATTTGTGCGAGGAG 59.601 52.381 5.81 0.00 45.25 3.69
7584 12207 1.089920 ATCACATTTGTGCGAGGAGC 58.910 50.000 5.81 0.00 45.25 4.70
7596 12219 3.019783 AGGAGCCGAGATCCTCCA 58.980 61.111 15.56 0.00 46.28 3.86
7597 12220 1.456705 AGGAGCCGAGATCCTCCAC 60.457 63.158 15.56 0.00 46.28 4.02
7598 12221 1.758514 GGAGCCGAGATCCTCCACA 60.759 63.158 10.03 0.00 45.55 4.17
7599 12222 1.439644 GAGCCGAGATCCTCCACAC 59.560 63.158 0.00 0.00 0.00 3.82
7600 12223 1.305297 AGCCGAGATCCTCCACACA 60.305 57.895 0.00 0.00 0.00 3.72
7601 12224 0.689080 AGCCGAGATCCTCCACACAT 60.689 55.000 0.00 0.00 0.00 3.21
7602 12225 0.249657 GCCGAGATCCTCCACACATC 60.250 60.000 0.00 0.00 0.00 3.06
7603 12226 0.390860 CCGAGATCCTCCACACATCC 59.609 60.000 0.00 0.00 0.00 3.51
7604 12227 1.114627 CGAGATCCTCCACACATCCA 58.885 55.000 0.00 0.00 0.00 3.41
7605 12228 1.202463 CGAGATCCTCCACACATCCAC 60.202 57.143 0.00 0.00 0.00 4.02
7606 12229 0.826715 AGATCCTCCACACATCCACG 59.173 55.000 0.00 0.00 0.00 4.94
7607 12230 0.179073 GATCCTCCACACATCCACGG 60.179 60.000 0.00 0.00 0.00 4.94
7608 12231 2.257409 ATCCTCCACACATCCACGGC 62.257 60.000 0.00 0.00 0.00 5.68
7609 12232 2.436646 CTCCACACATCCACGGCC 60.437 66.667 0.00 0.00 0.00 6.13
7610 12233 3.976701 CTCCACACATCCACGGCCC 62.977 68.421 0.00 0.00 0.00 5.80
7611 12234 4.343323 CCACACATCCACGGCCCA 62.343 66.667 0.00 0.00 0.00 5.36
7612 12235 2.282110 CACACATCCACGGCCCAA 60.282 61.111 0.00 0.00 0.00 4.12
7613 12236 1.900981 CACACATCCACGGCCCAAA 60.901 57.895 0.00 0.00 0.00 3.28
7614 12237 1.603455 ACACATCCACGGCCCAAAG 60.603 57.895 0.00 0.00 0.00 2.77
7615 12238 2.035626 ACATCCACGGCCCAAAGG 59.964 61.111 0.00 0.00 0.00 3.11
7625 12248 2.036256 CCCAAAGGCCACTGGAGG 59.964 66.667 21.70 7.12 34.35 4.30
7626 12249 2.845345 CCCAAAGGCCACTGGAGGT 61.845 63.158 21.70 0.00 34.35 3.85
7627 12250 1.604593 CCAAAGGCCACTGGAGGTG 60.605 63.158 16.39 0.00 44.96 4.00
7634 12257 2.997315 CACTGGAGGTGGAGCGGA 60.997 66.667 0.00 0.00 41.90 5.54
7635 12258 2.039624 ACTGGAGGTGGAGCGGAT 59.960 61.111 0.00 0.00 0.00 4.18
7636 12259 2.060980 ACTGGAGGTGGAGCGGATC 61.061 63.158 0.00 0.00 0.00 3.36
7637 12260 3.144120 CTGGAGGTGGAGCGGATCG 62.144 68.421 0.00 0.00 0.00 3.69
7638 12261 3.917760 GGAGGTGGAGCGGATCGG 61.918 72.222 0.00 0.00 0.00 4.18
7639 12262 4.593864 GAGGTGGAGCGGATCGGC 62.594 72.222 16.92 16.92 0.00 5.54
7660 12283 4.785453 GGTGCCAGCGGGAGAAGG 62.785 72.222 7.23 0.00 35.59 3.46
7661 12284 3.706373 GTGCCAGCGGGAGAAGGA 61.706 66.667 7.23 0.00 35.59 3.36
7662 12285 3.393970 TGCCAGCGGGAGAAGGAG 61.394 66.667 7.23 0.00 35.59 3.69
7663 12286 3.077556 GCCAGCGGGAGAAGGAGA 61.078 66.667 7.23 0.00 35.59 3.71
7664 12287 2.896443 CCAGCGGGAGAAGGAGAC 59.104 66.667 0.00 0.00 35.59 3.36
7665 12288 1.684049 CCAGCGGGAGAAGGAGACT 60.684 63.158 0.00 0.00 38.68 3.24
7666 12289 1.261238 CCAGCGGGAGAAGGAGACTT 61.261 60.000 0.00 0.00 46.64 3.01
7667 12290 2.783989 CCAGCGGGAGAAGGAGACTTT 61.784 57.143 0.00 0.00 44.67 2.66
7668 12291 4.259656 CCAGCGGGAGAAGGAGACTTTT 62.260 54.545 0.00 0.00 44.67 2.27
7680 12303 4.967036 AGGAGACTTTTCTTGTGGAAGAG 58.033 43.478 0.00 0.00 37.07 2.85
7681 12304 3.500299 GGAGACTTTTCTTGTGGAAGAGC 59.500 47.826 0.00 0.00 39.44 4.09
7682 12305 4.384940 GAGACTTTTCTTGTGGAAGAGCT 58.615 43.478 0.00 0.00 39.44 4.09
7683 12306 4.786425 AGACTTTTCTTGTGGAAGAGCTT 58.214 39.130 0.00 0.00 39.44 3.74
7684 12307 5.196695 AGACTTTTCTTGTGGAAGAGCTTT 58.803 37.500 0.00 0.00 39.44 3.51
7685 12308 5.067023 AGACTTTTCTTGTGGAAGAGCTTTG 59.933 40.000 0.00 0.00 39.44 2.77
7686 12309 4.949856 ACTTTTCTTGTGGAAGAGCTTTGA 59.050 37.500 0.00 0.00 39.44 2.69
7687 12310 5.067023 ACTTTTCTTGTGGAAGAGCTTTGAG 59.933 40.000 0.00 0.00 39.44 3.02
7688 12311 3.845781 TCTTGTGGAAGAGCTTTGAGT 57.154 42.857 0.00 0.00 32.98 3.41
7689 12312 3.733337 TCTTGTGGAAGAGCTTTGAGTC 58.267 45.455 0.00 0.00 32.98 3.36
7690 12313 3.389329 TCTTGTGGAAGAGCTTTGAGTCT 59.611 43.478 0.00 0.00 32.98 3.24
7691 12314 3.845781 TGTGGAAGAGCTTTGAGTCTT 57.154 42.857 0.00 0.00 35.67 3.01
7692 12315 4.156455 TGTGGAAGAGCTTTGAGTCTTT 57.844 40.909 0.00 0.00 33.04 2.52
7693 12316 4.526970 TGTGGAAGAGCTTTGAGTCTTTT 58.473 39.130 0.00 0.00 33.04 2.27
7694 12317 4.949856 TGTGGAAGAGCTTTGAGTCTTTTT 59.050 37.500 0.00 0.00 33.04 1.94
7695 12318 6.119536 TGTGGAAGAGCTTTGAGTCTTTTTA 58.880 36.000 0.00 0.00 33.04 1.52
7696 12319 6.772716 TGTGGAAGAGCTTTGAGTCTTTTTAT 59.227 34.615 0.00 0.00 33.04 1.40
7697 12320 7.936847 TGTGGAAGAGCTTTGAGTCTTTTTATA 59.063 33.333 0.00 0.00 33.04 0.98
7698 12321 8.951243 GTGGAAGAGCTTTGAGTCTTTTTATAT 58.049 33.333 0.00 0.00 33.04 0.86
7699 12322 9.520515 TGGAAGAGCTTTGAGTCTTTTTATATT 57.479 29.630 0.00 0.00 33.04 1.28
7700 12323 9.780413 GGAAGAGCTTTGAGTCTTTTTATATTG 57.220 33.333 0.00 0.00 33.04 1.90
7701 12324 9.780413 GAAGAGCTTTGAGTCTTTTTATATTGG 57.220 33.333 0.00 0.00 33.04 3.16
7702 12325 8.870075 AGAGCTTTGAGTCTTTTTATATTGGT 57.130 30.769 0.00 0.00 0.00 3.67
7703 12326 9.301897 AGAGCTTTGAGTCTTTTTATATTGGTT 57.698 29.630 0.00 0.00 0.00 3.67
7706 12329 9.788960 GCTTTGAGTCTTTTTATATTGGTTAGG 57.211 33.333 0.00 0.00 0.00 2.69
7717 12340 8.760980 TTTATATTGGTTAGGACATCAAAGGG 57.239 34.615 0.00 0.00 0.00 3.95
7718 12341 4.946160 ATTGGTTAGGACATCAAAGGGA 57.054 40.909 0.00 0.00 0.00 4.20
7719 12342 4.946160 TTGGTTAGGACATCAAAGGGAT 57.054 40.909 0.00 0.00 36.39 3.85
7761 12384 0.107410 TACGGTGATACGGGTACGGT 60.107 55.000 0.00 0.00 46.48 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 381 9.334947 CTAAAATCTGATTGCCTTCTCTTATCA 57.665 33.333 3.22 0.00 0.00 2.15
168 412 2.880268 TCAGTTTCACTGCCATCAACAG 59.120 45.455 0.00 0.00 45.54 3.16
259 505 1.217882 GCCGGCACACTACACATATC 58.782 55.000 24.80 0.00 0.00 1.63
262 508 2.046314 GGCCGGCACACTACACAT 60.046 61.111 30.85 0.00 0.00 3.21
273 519 1.984288 ATTCACCTAAGAGGGCCGGC 61.984 60.000 21.18 21.18 40.58 6.13
276 522 3.282885 CAAGAATTCACCTAAGAGGGCC 58.717 50.000 8.44 0.00 40.58 5.80
284 530 3.011144 TCCCAATGCCAAGAATTCACCTA 59.989 43.478 8.44 0.00 0.00 3.08
304 550 8.593492 AGAAGCAAAACAAAATTTATCACTCC 57.407 30.769 0.00 0.00 0.00 3.85
340 593 6.364976 ACAAAATAAAAAGCTTATGCGGACAC 59.635 34.615 0.00 0.00 45.42 3.67
345 600 9.643652 TCAAAAACAAAATAAAAAGCTTATGCG 57.356 25.926 0.00 0.00 45.42 4.73
371 626 0.693049 AAGGCCACTGACCGATTCTT 59.307 50.000 5.01 0.00 0.00 2.52
395 650 6.205464 TCTCTAAAAAGAGTTGGCATCACTTG 59.795 38.462 8.66 0.00 37.23 3.16
442 699 5.188434 TCTTTGGCGAAGAGAATTCATCAT 58.812 37.500 13.24 0.00 39.44 2.45
456 713 1.806542 GCATTGTCTCTTCTTTGGCGA 59.193 47.619 0.00 0.00 0.00 5.54
461 718 8.153550 TCTAGAGAAAAGCATTGTCTCTTCTTT 58.846 33.333 15.54 2.67 44.51 2.52
496 753 8.240682 GGTAAACACACATAAATCTGCATTGTA 58.759 33.333 0.00 0.00 0.00 2.41
497 754 7.039784 AGGTAAACACACATAAATCTGCATTGT 60.040 33.333 0.00 0.00 0.00 2.71
614 879 2.673368 CTCAAGGGTACAACTCGCATTC 59.327 50.000 0.00 0.00 0.00 2.67
617 882 0.320374 CCTCAAGGGTACAACTCGCA 59.680 55.000 0.00 0.00 0.00 5.10
622 887 2.158579 TGGGTTTCCTCAAGGGTACAAC 60.159 50.000 0.00 0.00 36.25 3.32
627 892 0.701310 AGGTGGGTTTCCTCAAGGGT 60.701 55.000 0.00 0.00 36.25 4.34
628 893 0.251341 CAGGTGGGTTTCCTCAAGGG 60.251 60.000 0.00 0.00 35.41 3.95
629 894 0.771127 TCAGGTGGGTTTCCTCAAGG 59.229 55.000 0.00 0.00 32.37 3.61
630 895 1.884067 GCTCAGGTGGGTTTCCTCAAG 60.884 57.143 0.00 0.00 32.37 3.02
631 896 0.110486 GCTCAGGTGGGTTTCCTCAA 59.890 55.000 0.00 0.00 32.37 3.02
632 897 1.761174 GCTCAGGTGGGTTTCCTCA 59.239 57.895 0.00 0.00 32.37 3.86
633 898 1.002011 GGCTCAGGTGGGTTTCCTC 60.002 63.158 0.00 0.00 32.37 3.71
634 899 0.178873 TAGGCTCAGGTGGGTTTCCT 60.179 55.000 0.00 0.00 35.45 3.36
635 900 0.919710 ATAGGCTCAGGTGGGTTTCC 59.080 55.000 0.00 0.00 0.00 3.13
636 901 1.840635 AGATAGGCTCAGGTGGGTTTC 59.159 52.381 0.00 0.00 0.00 2.78
637 902 1.561542 CAGATAGGCTCAGGTGGGTTT 59.438 52.381 0.00 0.00 0.00 3.27
638 903 1.207791 CAGATAGGCTCAGGTGGGTT 58.792 55.000 0.00 0.00 0.00 4.11
639 904 0.043334 ACAGATAGGCTCAGGTGGGT 59.957 55.000 0.00 0.00 0.00 4.51
640 905 1.689273 GTACAGATAGGCTCAGGTGGG 59.311 57.143 0.00 0.00 0.00 4.61
641 906 1.689273 GGTACAGATAGGCTCAGGTGG 59.311 57.143 0.00 0.00 0.00 4.61
642 907 1.338337 CGGTACAGATAGGCTCAGGTG 59.662 57.143 0.00 0.00 0.00 4.00
699 964 2.464459 GGCGTTCGATCTGGGCTTG 61.464 63.158 0.00 0.00 0.00 4.01
707 972 0.108041 TTAGGGTTGGGCGTTCGATC 60.108 55.000 0.00 0.00 0.00 3.69
776 1050 2.267961 GGGTCGCGATTTGGAGGT 59.732 61.111 14.06 0.00 0.00 3.85
1064 1338 0.669077 GCCGCCGATCTTTCTCTCTA 59.331 55.000 0.00 0.00 0.00 2.43
1102 1396 2.626780 CGTCGACTGCACCTCCTCA 61.627 63.158 14.70 0.00 0.00 3.86
1179 1473 0.896923 AGAAGCAGCAGGAGAGAGTG 59.103 55.000 0.00 0.00 0.00 3.51
1180 1474 1.185315 GAGAAGCAGCAGGAGAGAGT 58.815 55.000 0.00 0.00 0.00 3.24
1181 1475 0.461135 GGAGAAGCAGCAGGAGAGAG 59.539 60.000 0.00 0.00 0.00 3.20
1182 1476 1.318886 CGGAGAAGCAGCAGGAGAGA 61.319 60.000 0.00 0.00 0.00 3.10
1218 1563 3.834938 AGGAAAATTCGGGGTAACAACA 58.165 40.909 0.00 0.00 39.74 3.33
1247 1927 4.470462 CAAAGAGAAGCAAACGAATCCTG 58.530 43.478 0.00 0.00 0.00 3.86
1248 1928 3.057946 GCAAAGAGAAGCAAACGAATCCT 60.058 43.478 0.00 0.00 0.00 3.24
1460 2140 2.967397 CACGGACGGACCTTGCTA 59.033 61.111 0.00 0.00 36.31 3.49
1497 2181 5.041191 AGTATCTAGCAATTTGTGAGGGG 57.959 43.478 0.00 0.00 0.00 4.79
1535 2223 1.994779 GTACATTGCAGCCAAACATGC 59.005 47.619 0.00 0.00 42.86 4.06
1559 2408 5.095490 GTGCAAATCTAATCCGGAAAACAG 58.905 41.667 9.01 3.23 0.00 3.16
1563 2412 5.741011 ACTAGTGCAAATCTAATCCGGAAA 58.259 37.500 9.01 0.00 0.00 3.13
1567 2416 7.441157 TGGATTAACTAGTGCAAATCTAATCCG 59.559 37.037 23.08 0.88 43.07 4.18
1571 2436 9.515226 AGTTTGGATTAACTAGTGCAAATCTAA 57.485 29.630 18.20 16.60 36.15 2.10
1584 2449 8.088365 GGACATTTTTGCTAGTTTGGATTAACT 58.912 33.333 0.00 0.00 41.13 2.24
1593 2458 5.473066 AGCATGGACATTTTTGCTAGTTT 57.527 34.783 0.00 0.00 43.28 2.66
1594 2459 5.232463 CAAGCATGGACATTTTTGCTAGTT 58.768 37.500 0.00 0.00 44.26 2.24
1595 2460 4.813027 CAAGCATGGACATTTTTGCTAGT 58.187 39.130 0.00 0.00 44.26 2.57
1596 2461 3.615496 GCAAGCATGGACATTTTTGCTAG 59.385 43.478 16.88 0.00 44.26 3.42
1597 2462 3.587923 GCAAGCATGGACATTTTTGCTA 58.412 40.909 16.88 0.00 44.26 3.49
1598 2463 2.419667 GCAAGCATGGACATTTTTGCT 58.580 42.857 16.88 7.50 46.85 3.91
1599 2464 1.127213 CGCAAGCATGGACATTTTTGC 59.873 47.619 15.28 15.28 35.71 3.68
1600 2465 2.409378 GTCGCAAGCATGGACATTTTTG 59.591 45.455 0.00 0.00 37.18 2.44
1601 2466 2.676076 GTCGCAAGCATGGACATTTTT 58.324 42.857 0.00 0.00 37.18 1.94
1602 2467 1.401409 CGTCGCAAGCATGGACATTTT 60.401 47.619 9.96 0.00 37.18 1.82
1603 2468 0.168788 CGTCGCAAGCATGGACATTT 59.831 50.000 9.96 0.00 37.18 2.32
1604 2469 1.647545 CCGTCGCAAGCATGGACATT 61.648 55.000 9.96 0.00 37.18 2.71
1605 2470 2.108514 CCGTCGCAAGCATGGACAT 61.109 57.895 9.96 0.00 37.18 3.06
1606 2471 2.741985 CCGTCGCAAGCATGGACA 60.742 61.111 9.96 0.00 37.18 4.02
1607 2472 3.499737 CCCGTCGCAAGCATGGAC 61.500 66.667 0.00 0.00 37.18 4.02
1634 2499 2.441164 TCTCTGGCTCTCTCCGGC 60.441 66.667 0.00 0.00 32.46 6.13
1635 2500 1.827789 CCTCTCTGGCTCTCTCCGG 60.828 68.421 0.00 0.00 0.00 5.14
1636 2501 1.101049 GTCCTCTCTGGCTCTCTCCG 61.101 65.000 0.00 0.00 35.26 4.63
1637 2502 0.033601 TGTCCTCTCTGGCTCTCTCC 60.034 60.000 0.00 0.00 35.26 3.71
1638 2503 1.682854 CATGTCCTCTCTGGCTCTCTC 59.317 57.143 0.00 0.00 35.26 3.20
1639 2504 1.287442 TCATGTCCTCTCTGGCTCTCT 59.713 52.381 0.00 0.00 35.26 3.10
1640 2505 1.774110 TCATGTCCTCTCTGGCTCTC 58.226 55.000 0.00 0.00 35.26 3.20
1641 2506 2.475339 ATCATGTCCTCTCTGGCTCT 57.525 50.000 0.00 0.00 35.26 4.09
1642 2507 3.640967 ACTAATCATGTCCTCTCTGGCTC 59.359 47.826 0.00 0.00 35.26 4.70
1643 2508 3.652055 ACTAATCATGTCCTCTCTGGCT 58.348 45.455 0.00 0.00 35.26 4.75
1644 2509 4.100808 AGAACTAATCATGTCCTCTCTGGC 59.899 45.833 0.00 0.00 35.26 4.85
1645 2510 5.362143 TGAGAACTAATCATGTCCTCTCTGG 59.638 44.000 0.00 0.00 31.25 3.86
1646 2511 6.462552 TGAGAACTAATCATGTCCTCTCTG 57.537 41.667 0.00 0.00 31.25 3.35
1647 2512 6.438741 TGTTGAGAACTAATCATGTCCTCTCT 59.561 38.462 0.00 0.00 31.25 3.10
1648 2513 6.634805 TGTTGAGAACTAATCATGTCCTCTC 58.365 40.000 0.00 0.00 0.00 3.20
1649 2514 6.611613 TGTTGAGAACTAATCATGTCCTCT 57.388 37.500 0.00 0.00 0.00 3.69
1650 2515 5.293079 GCTGTTGAGAACTAATCATGTCCTC 59.707 44.000 0.00 0.00 0.00 3.71
1651 2516 5.046014 AGCTGTTGAGAACTAATCATGTCCT 60.046 40.000 0.00 0.00 0.00 3.85
1652 2517 5.181748 AGCTGTTGAGAACTAATCATGTCC 58.818 41.667 0.00 0.00 0.00 4.02
1653 2518 6.019156 GCTAGCTGTTGAGAACTAATCATGTC 60.019 42.308 7.70 0.00 0.00 3.06
1654 2519 5.814705 GCTAGCTGTTGAGAACTAATCATGT 59.185 40.000 7.70 0.00 0.00 3.21
1655 2520 6.047870 AGCTAGCTGTTGAGAACTAATCATG 58.952 40.000 18.57 0.00 0.00 3.07
1656 2521 6.232581 AGCTAGCTGTTGAGAACTAATCAT 57.767 37.500 18.57 0.00 0.00 2.45
1657 2522 5.667539 AGCTAGCTGTTGAGAACTAATCA 57.332 39.130 18.57 0.00 0.00 2.57
1658 2523 6.695278 CACTAGCTAGCTGTTGAGAACTAATC 59.305 42.308 27.68 0.00 0.00 1.75
1659 2524 6.378564 TCACTAGCTAGCTGTTGAGAACTAAT 59.621 38.462 27.68 0.00 0.00 1.73
1660 2525 5.710567 TCACTAGCTAGCTGTTGAGAACTAA 59.289 40.000 27.68 1.11 0.00 2.24
1661 2526 5.254115 TCACTAGCTAGCTGTTGAGAACTA 58.746 41.667 27.68 1.67 0.00 2.24
1662 2527 4.082845 TCACTAGCTAGCTGTTGAGAACT 58.917 43.478 27.68 0.00 0.00 3.01
1663 2528 4.442375 TCACTAGCTAGCTGTTGAGAAC 57.558 45.455 27.68 0.00 0.00 3.01
1664 2529 5.468540 TTTCACTAGCTAGCTGTTGAGAA 57.531 39.130 27.68 20.69 0.00 2.87
1665 2530 5.667539 ATTTCACTAGCTAGCTGTTGAGA 57.332 39.130 27.68 21.62 0.00 3.27
1666 2531 6.369890 TCAAATTTCACTAGCTAGCTGTTGAG 59.630 38.462 27.68 18.25 0.00 3.02
1667 2532 6.230472 TCAAATTTCACTAGCTAGCTGTTGA 58.770 36.000 27.68 23.52 0.00 3.18
1668 2533 6.486253 TCAAATTTCACTAGCTAGCTGTTG 57.514 37.500 27.68 21.72 0.00 3.33
1669 2534 6.404074 GCATCAAATTTCACTAGCTAGCTGTT 60.404 38.462 27.68 10.82 0.00 3.16
1670 2535 5.065731 GCATCAAATTTCACTAGCTAGCTGT 59.934 40.000 27.68 18.98 0.00 4.40
1671 2536 5.505324 GGCATCAAATTTCACTAGCTAGCTG 60.505 44.000 27.68 18.34 0.00 4.24
1672 2537 4.578105 GGCATCAAATTTCACTAGCTAGCT 59.422 41.667 23.12 23.12 0.00 3.32
1673 2538 4.261363 GGGCATCAAATTTCACTAGCTAGC 60.261 45.833 20.91 6.62 0.00 3.42
1674 2539 4.276926 GGGGCATCAAATTTCACTAGCTAG 59.723 45.833 19.44 19.44 0.00 3.42
1675 2540 4.207165 GGGGCATCAAATTTCACTAGCTA 58.793 43.478 0.00 0.00 0.00 3.32
1676 2541 3.026694 GGGGCATCAAATTTCACTAGCT 58.973 45.455 0.00 0.00 0.00 3.32
1677 2542 2.101415 GGGGGCATCAAATTTCACTAGC 59.899 50.000 0.00 0.00 0.00 3.42
1678 2543 3.364549 TGGGGGCATCAAATTTCACTAG 58.635 45.455 0.00 0.00 0.00 2.57
1679 2544 3.464720 TGGGGGCATCAAATTTCACTA 57.535 42.857 0.00 0.00 0.00 2.74
1680 2545 2.323999 TGGGGGCATCAAATTTCACT 57.676 45.000 0.00 0.00 0.00 3.41
1681 2546 2.158914 GGATGGGGGCATCAAATTTCAC 60.159 50.000 0.00 0.00 33.44 3.18
1682 2547 2.117865 GGATGGGGGCATCAAATTTCA 58.882 47.619 0.00 0.00 33.44 2.69
1683 2548 1.069049 CGGATGGGGGCATCAAATTTC 59.931 52.381 0.00 0.00 33.44 2.17
1684 2549 1.122227 CGGATGGGGGCATCAAATTT 58.878 50.000 0.00 0.00 33.44 1.82
1685 2550 0.261402 TCGGATGGGGGCATCAAATT 59.739 50.000 0.00 0.00 33.44 1.82
1686 2551 0.261402 TTCGGATGGGGGCATCAAAT 59.739 50.000 0.00 0.00 33.44 2.32
1687 2552 0.040351 TTTCGGATGGGGGCATCAAA 59.960 50.000 0.00 0.00 33.44 2.69
1688 2553 0.395586 CTTTCGGATGGGGGCATCAA 60.396 55.000 0.00 0.00 33.44 2.57
1689 2554 1.227102 CTTTCGGATGGGGGCATCA 59.773 57.895 0.00 0.00 33.44 3.07
1690 2555 2.196245 GCTTTCGGATGGGGGCATC 61.196 63.158 0.00 0.00 0.00 3.91
1691 2556 2.123726 GCTTTCGGATGGGGGCAT 60.124 61.111 0.00 0.00 0.00 4.40
1692 2557 3.338250 AGCTTTCGGATGGGGGCA 61.338 61.111 0.00 0.00 0.00 5.36
1693 2558 2.830370 CAGCTTTCGGATGGGGGC 60.830 66.667 0.00 0.00 0.00 5.80
1694 2559 2.830370 GCAGCTTTCGGATGGGGG 60.830 66.667 0.00 0.00 0.00 5.40
1817 2698 4.582656 CAGGTTTGAGATTTTGGTGGTACA 59.417 41.667 0.00 0.00 0.00 2.90
1818 2699 4.558697 GCAGGTTTGAGATTTTGGTGGTAC 60.559 45.833 0.00 0.00 0.00 3.34
1819 2700 3.572255 GCAGGTTTGAGATTTTGGTGGTA 59.428 43.478 0.00 0.00 0.00 3.25
1820 2701 2.365293 GCAGGTTTGAGATTTTGGTGGT 59.635 45.455 0.00 0.00 0.00 4.16
1821 2702 2.364970 TGCAGGTTTGAGATTTTGGTGG 59.635 45.455 0.00 0.00 0.00 4.61
1872 2757 4.201744 GCATTCATGTAAATGTTGCCTTGC 60.202 41.667 10.63 2.32 38.60 4.01
1957 2843 4.513692 TGGTGATTGGTTTCAGTAAAGTCG 59.486 41.667 0.00 0.00 0.00 4.18
1971 2857 1.340889 CCCTGTTGTGTTGGTGATTGG 59.659 52.381 0.00 0.00 0.00 3.16
2049 2936 2.048023 AACGCCCCATGCATCTGTG 61.048 57.895 0.00 0.00 41.33 3.66
2072 2959 3.335579 GCATTCGTCCAAGGAAGTAGTT 58.664 45.455 2.06 0.00 0.00 2.24
2097 2984 2.768253 TGATGGCAAATGAGACGACT 57.232 45.000 0.00 0.00 0.00 4.18
2103 2990 4.583073 TCATCCAGATTGATGGCAAATGAG 59.417 41.667 0.00 0.00 41.97 2.90
2120 3007 1.126488 GAGGATCCTGCTGTCATCCA 58.874 55.000 22.02 0.00 38.95 3.41
2150 3037 2.135933 GGCGATTTGGGAAGAGATACG 58.864 52.381 0.00 0.00 0.00 3.06
2188 3075 1.271934 TGTGCAAACAACAGCAAGTGT 59.728 42.857 0.00 0.00 43.20 3.55
2201 3088 5.582550 TGTTTCAATTCGTACATGTGCAAA 58.417 33.333 14.55 1.81 0.00 3.68
2296 3184 1.550130 GGGAAGACCACCGACATCCA 61.550 60.000 0.00 0.00 39.85 3.41
2338 3226 2.736995 CGTTGCCGGCGAAGAAGA 60.737 61.111 23.74 0.00 0.00 2.87
2379 3267 1.153289 CGACCCATTGCTGGAGGAG 60.153 63.158 0.00 0.00 46.37 3.69
2380 3268 2.989639 CGACCCATTGCTGGAGGA 59.010 61.111 0.00 0.00 46.37 3.71
2381 3269 2.825836 GCGACCCATTGCTGGAGG 60.826 66.667 0.00 0.00 46.37 4.30
2401 3292 1.544825 CCCTCATGTCGTGGTCCTGT 61.545 60.000 0.00 0.00 0.00 4.00
2462 3353 2.444700 GAACACCTCCTCCGGCGAAA 62.445 60.000 9.30 0.00 0.00 3.46
2480 3371 2.029964 GCACGACTTCCCGTTGGA 59.970 61.111 0.00 0.00 41.29 3.53
2483 3374 2.030562 CCTGCACGACTTCCCGTT 59.969 61.111 0.00 0.00 41.29 4.44
2486 3377 2.435059 GCTCCTGCACGACTTCCC 60.435 66.667 0.00 0.00 39.41 3.97
2493 3384 0.882042 GGATATGTGGCTCCTGCACG 60.882 60.000 0.00 0.00 41.91 5.34
2495 3386 2.935348 AGGATATGTGGCTCCTGCA 58.065 52.632 0.00 0.00 40.43 4.41
2505 3396 3.777106 ATCCGCAATCACAGGATATGT 57.223 42.857 0.00 0.00 42.47 2.29
2506 3397 5.443185 AAAATCCGCAATCACAGGATATG 57.557 39.130 0.00 0.00 43.39 1.78
2542 3433 0.322997 TAAACAACCAGCCCCCATCG 60.323 55.000 0.00 0.00 0.00 3.84
2543 3434 1.756538 CATAAACAACCAGCCCCCATC 59.243 52.381 0.00 0.00 0.00 3.51
2544 3435 1.864669 CATAAACAACCAGCCCCCAT 58.135 50.000 0.00 0.00 0.00 4.00
2592 3484 1.891919 GCAGGAAAGCGTGACCACA 60.892 57.895 0.85 0.00 31.73 4.17
2594 3486 1.148273 AAGCAGGAAAGCGTGACCA 59.852 52.632 0.00 0.00 40.15 4.02
2631 3528 4.446413 CCCTCGTACGGCCGCTTT 62.446 66.667 28.58 8.89 0.00 3.51
2725 3622 1.988406 GGGCTCCCGTGACCTTACT 60.988 63.158 0.00 0.00 0.00 2.24
2874 3781 3.305064 GCAAGGTGCGTTTCTCCAATTTA 60.305 43.478 0.00 0.00 31.71 1.40
2974 3885 8.657074 TGAAAAGAGAAGAGACAAAACGATAA 57.343 30.769 0.00 0.00 0.00 1.75
3420 4425 7.707624 ACATTGAATGTAATGGACAAGACAT 57.292 32.000 9.41 0.00 42.78 3.06
3813 4878 4.041691 AGCTCTGTAACCTAAAAGGCAAGA 59.958 41.667 0.00 0.00 39.63 3.02
4011 5076 6.216569 CAACTTAACAGTCTAGCAACAGAGA 58.783 40.000 0.00 0.00 30.45 3.10
4050 5115 3.080300 TCCACCCGCTGTAATTCAAAT 57.920 42.857 0.00 0.00 0.00 2.32
4063 5128 2.979814 TCAGATACACAATCCACCCG 57.020 50.000 0.00 0.00 34.90 5.28
4081 5146 9.495754 GCATAAAGACAATATTCTGAACACTTC 57.504 33.333 0.00 0.00 0.00 3.01
4515 7816 6.753180 TGCAAACAAATTATAAGGCTGAACA 58.247 32.000 0.00 0.00 0.00 3.18
4564 7865 9.892130 AAAAGTTGTTTTATGGATGGTACAAAA 57.108 25.926 0.00 0.00 36.43 2.44
4565 7866 9.892130 AAAAAGTTGTTTTATGGATGGTACAAA 57.108 25.926 0.00 0.00 36.98 2.83
4740 8126 1.463444 GCAACTTACAACTACCTGGCG 59.537 52.381 0.00 0.00 0.00 5.69
4874 8260 6.715464 TCTTATTAGCTTGCGAACTTTATGC 58.285 36.000 0.00 0.00 0.00 3.14
5032 8420 4.256920 CTGAACTCGATTGTCCTTCCATT 58.743 43.478 0.00 0.00 0.00 3.16
5034 8422 2.612972 GCTGAACTCGATTGTCCTTCCA 60.613 50.000 0.00 0.00 0.00 3.53
5035 8423 2.003301 GCTGAACTCGATTGTCCTTCC 58.997 52.381 0.00 0.00 0.00 3.46
5046 8434 0.655733 AACAAACCACGCTGAACTCG 59.344 50.000 0.00 0.00 0.00 4.18
5180 8568 9.391006 TGAAAGCATATAATTTACTTCTTCCGT 57.609 29.630 0.00 0.00 0.00 4.69
5418 8810 2.430332 CAAAAGAAAAGGCACCCAGTCA 59.570 45.455 0.00 0.00 0.00 3.41
5421 8813 4.559153 CATACAAAAGAAAAGGCACCCAG 58.441 43.478 0.00 0.00 0.00 4.45
5468 8860 1.827969 AGCTCTGCAATACCTTCGTCT 59.172 47.619 0.00 0.00 0.00 4.18
6001 9655 8.217799 AGGGCAAAATAGTACATAAGAGCAATA 58.782 33.333 0.00 0.00 0.00 1.90
6492 10154 3.438087 CACTAAAAGTGGGATGACAGCAG 59.562 47.826 0.00 0.00 42.35 4.24
6549 10213 6.003950 ACAACCAACAATGCTTACACTAGAT 58.996 36.000 0.00 0.00 0.00 1.98
6635 10335 0.391130 TAGCCTTGGCAACTACGCTG 60.391 55.000 14.54 0.00 34.33 5.18
7001 11323 5.942826 AGACCAGAATCAAATTGTCCTCTTC 59.057 40.000 0.00 0.00 0.00 2.87
7048 11403 9.924650 ACGATAATCCCTACACATAATCTAAAC 57.075 33.333 0.00 0.00 0.00 2.01
7161 11517 5.788533 TCCAGTTCTACCATAAAGGAAGGAA 59.211 40.000 0.00 0.00 41.22 3.36
7162 11518 5.347124 TCCAGTTCTACCATAAAGGAAGGA 58.653 41.667 0.00 0.00 41.22 3.36
7163 11519 5.693769 TCCAGTTCTACCATAAAGGAAGG 57.306 43.478 0.00 0.00 41.22 3.46
7164 11520 8.581253 AAATTCCAGTTCTACCATAAAGGAAG 57.419 34.615 0.00 0.00 41.22 3.46
7206 11562 1.134226 AAGTTGCGTCGGTCTTAACG 58.866 50.000 0.00 0.00 41.68 3.18
7219 11575 3.446799 TGACAAATGCTCAACAAGTTGC 58.553 40.909 8.04 0.00 40.24 4.17
7268 11624 4.210537 ACAGCACAACACAATACGTTACTC 59.789 41.667 0.00 0.00 0.00 2.59
7501 12119 5.502153 TTGCTAGATACCGTTTCTCTCTC 57.498 43.478 0.00 0.00 0.00 3.20
7577 12200 3.350377 GAGGATCTCGGCTCCTCG 58.650 66.667 11.40 0.00 46.88 4.63
7579 12202 1.456705 GTGGAGGATCTCGGCTCCT 60.457 63.158 14.53 1.62 45.95 3.69
7580 12203 1.758514 TGTGGAGGATCTCGGCTCC 60.759 63.158 8.40 8.40 36.58 4.70
7581 12204 1.323271 TGTGTGGAGGATCTCGGCTC 61.323 60.000 0.00 0.00 33.73 4.70
7582 12205 0.689080 ATGTGTGGAGGATCTCGGCT 60.689 55.000 0.00 0.00 33.73 5.52
7583 12206 0.249657 GATGTGTGGAGGATCTCGGC 60.250 60.000 0.00 0.00 33.73 5.54
7584 12207 0.390860 GGATGTGTGGAGGATCTCGG 59.609 60.000 0.00 0.00 33.73 4.63
7585 12208 1.114627 TGGATGTGTGGAGGATCTCG 58.885 55.000 0.00 0.00 33.73 4.04
7586 12209 1.202463 CGTGGATGTGTGGAGGATCTC 60.202 57.143 0.00 0.00 33.73 2.75
7587 12210 0.826715 CGTGGATGTGTGGAGGATCT 59.173 55.000 0.00 0.00 33.73 2.75
7588 12211 0.179073 CCGTGGATGTGTGGAGGATC 60.179 60.000 0.00 0.00 0.00 3.36
7589 12212 1.907739 CCGTGGATGTGTGGAGGAT 59.092 57.895 0.00 0.00 0.00 3.24
7590 12213 2.954684 GCCGTGGATGTGTGGAGGA 61.955 63.158 0.00 0.00 0.00 3.71
7591 12214 2.436646 GCCGTGGATGTGTGGAGG 60.437 66.667 0.00 0.00 0.00 4.30
7592 12215 2.436646 GGCCGTGGATGTGTGGAG 60.437 66.667 0.00 0.00 0.00 3.86
7593 12216 4.028490 GGGCCGTGGATGTGTGGA 62.028 66.667 0.00 0.00 0.00 4.02
7594 12217 3.859118 TTGGGCCGTGGATGTGTGG 62.859 63.158 0.00 0.00 0.00 4.17
7595 12218 1.865788 CTTTGGGCCGTGGATGTGTG 61.866 60.000 0.00 0.00 0.00 3.82
7596 12219 1.603455 CTTTGGGCCGTGGATGTGT 60.603 57.895 0.00 0.00 0.00 3.72
7597 12220 2.342650 CCTTTGGGCCGTGGATGTG 61.343 63.158 0.00 0.00 0.00 3.21
7598 12221 2.035626 CCTTTGGGCCGTGGATGT 59.964 61.111 0.00 0.00 0.00 3.06
7608 12231 2.036256 CCTCCAGTGGCCTTTGGG 59.964 66.667 21.29 13.78 35.13 4.12
7609 12232 1.604593 CACCTCCAGTGGCCTTTGG 60.605 63.158 17.19 17.19 43.26 3.28
7610 12233 4.085876 CACCTCCAGTGGCCTTTG 57.914 61.111 3.51 1.66 43.26 2.77
7617 12240 2.303549 GATCCGCTCCACCTCCAGTG 62.304 65.000 0.00 0.00 46.83 3.66
7618 12241 2.039624 ATCCGCTCCACCTCCAGT 59.960 61.111 0.00 0.00 0.00 4.00
7619 12242 2.818132 GATCCGCTCCACCTCCAG 59.182 66.667 0.00 0.00 0.00 3.86
7620 12243 3.147595 CGATCCGCTCCACCTCCA 61.148 66.667 0.00 0.00 0.00 3.86
7621 12244 3.917760 CCGATCCGCTCCACCTCC 61.918 72.222 0.00 0.00 0.00 4.30
7622 12245 4.593864 GCCGATCCGCTCCACCTC 62.594 72.222 0.00 0.00 0.00 3.85
7643 12266 4.785453 CCTTCTCCCGCTGGCACC 62.785 72.222 0.00 0.00 0.00 5.01
7644 12267 3.672295 CTCCTTCTCCCGCTGGCAC 62.672 68.421 0.00 0.00 0.00 5.01
7645 12268 3.393970 CTCCTTCTCCCGCTGGCA 61.394 66.667 0.00 0.00 0.00 4.92
7646 12269 3.077556 TCTCCTTCTCCCGCTGGC 61.078 66.667 0.00 0.00 0.00 4.85
7647 12270 1.261238 AAGTCTCCTTCTCCCGCTGG 61.261 60.000 0.00 0.00 0.00 4.85
7648 12271 0.610687 AAAGTCTCCTTCTCCCGCTG 59.389 55.000 0.00 0.00 0.00 5.18
7649 12272 1.276705 GAAAAGTCTCCTTCTCCCGCT 59.723 52.381 0.00 0.00 0.00 5.52
7650 12273 1.276705 AGAAAAGTCTCCTTCTCCCGC 59.723 52.381 0.00 0.00 0.00 6.13
7651 12274 3.244249 ACAAGAAAAGTCTCCTTCTCCCG 60.244 47.826 0.00 0.00 30.70 5.14
7652 12275 4.068599 CACAAGAAAAGTCTCCTTCTCCC 58.931 47.826 0.00 0.00 30.70 4.30
7653 12276 4.068599 CCACAAGAAAAGTCTCCTTCTCC 58.931 47.826 0.00 0.00 30.70 3.71
7654 12277 4.962155 TCCACAAGAAAAGTCTCCTTCTC 58.038 43.478 0.00 0.00 30.70 2.87
7655 12278 5.131142 TCTTCCACAAGAAAAGTCTCCTTCT 59.869 40.000 0.00 0.00 35.57 2.85
7656 12279 5.368989 TCTTCCACAAGAAAAGTCTCCTTC 58.631 41.667 0.00 0.00 35.57 3.46
7657 12280 5.372373 CTCTTCCACAAGAAAAGTCTCCTT 58.628 41.667 0.00 0.00 38.23 3.36
7658 12281 4.745172 GCTCTTCCACAAGAAAAGTCTCCT 60.745 45.833 0.00 0.00 38.23 3.69
7659 12282 3.500299 GCTCTTCCACAAGAAAAGTCTCC 59.500 47.826 0.00 0.00 38.23 3.71
7660 12283 4.384940 AGCTCTTCCACAAGAAAAGTCTC 58.615 43.478 0.00 0.00 38.23 3.36
7661 12284 4.429854 AGCTCTTCCACAAGAAAAGTCT 57.570 40.909 0.00 0.00 38.23 3.24
7662 12285 5.066505 TCAAAGCTCTTCCACAAGAAAAGTC 59.933 40.000 0.00 0.00 38.23 3.01
7663 12286 4.949856 TCAAAGCTCTTCCACAAGAAAAGT 59.050 37.500 0.00 0.00 38.23 2.66
7664 12287 5.067023 ACTCAAAGCTCTTCCACAAGAAAAG 59.933 40.000 0.00 0.00 38.23 2.27
7665 12288 4.949856 ACTCAAAGCTCTTCCACAAGAAAA 59.050 37.500 0.00 0.00 38.23 2.29
7666 12289 4.526970 ACTCAAAGCTCTTCCACAAGAAA 58.473 39.130 0.00 0.00 38.23 2.52
7667 12290 4.130118 GACTCAAAGCTCTTCCACAAGAA 58.870 43.478 0.00 0.00 38.23 2.52
7668 12291 3.389329 AGACTCAAAGCTCTTCCACAAGA 59.611 43.478 0.00 0.00 37.11 3.02
7669 12292 3.737850 AGACTCAAAGCTCTTCCACAAG 58.262 45.455 0.00 0.00 0.00 3.16
7670 12293 3.845781 AGACTCAAAGCTCTTCCACAA 57.154 42.857 0.00 0.00 0.00 3.33
7671 12294 3.845781 AAGACTCAAAGCTCTTCCACA 57.154 42.857 0.00 0.00 0.00 4.17
7672 12295 5.506686 AAAAAGACTCAAAGCTCTTCCAC 57.493 39.130 0.00 0.00 0.00 4.02
7673 12296 9.520515 AATATAAAAAGACTCAAAGCTCTTCCA 57.479 29.630 0.00 0.00 0.00 3.53
7674 12297 9.780413 CAATATAAAAAGACTCAAAGCTCTTCC 57.220 33.333 0.00 0.00 0.00 3.46
7675 12298 9.780413 CCAATATAAAAAGACTCAAAGCTCTTC 57.220 33.333 0.00 0.00 0.00 2.87
7676 12299 9.301897 ACCAATATAAAAAGACTCAAAGCTCTT 57.698 29.630 0.00 0.00 0.00 2.85
7677 12300 8.870075 ACCAATATAAAAAGACTCAAAGCTCT 57.130 30.769 0.00 0.00 0.00 4.09
7680 12303 9.788960 CCTAACCAATATAAAAAGACTCAAAGC 57.211 33.333 0.00 0.00 0.00 3.51
7691 12314 9.196139 CCCTTTGATGTCCTAACCAATATAAAA 57.804 33.333 0.00 0.00 0.00 1.52
7692 12315 8.561769 TCCCTTTGATGTCCTAACCAATATAAA 58.438 33.333 0.00 0.00 0.00 1.40
7693 12316 8.108378 TCCCTTTGATGTCCTAACCAATATAA 57.892 34.615 0.00 0.00 0.00 0.98
7694 12317 7.699709 TCCCTTTGATGTCCTAACCAATATA 57.300 36.000 0.00 0.00 0.00 0.86
7695 12318 6.590656 TCCCTTTGATGTCCTAACCAATAT 57.409 37.500 0.00 0.00 0.00 1.28
7696 12319 6.364701 CATCCCTTTGATGTCCTAACCAATA 58.635 40.000 0.00 0.00 44.91 1.90
7697 12320 4.946160 TCCCTTTGATGTCCTAACCAAT 57.054 40.909 0.00 0.00 0.00 3.16
7698 12321 4.599041 CATCCCTTTGATGTCCTAACCAA 58.401 43.478 0.00 0.00 44.91 3.67
7699 12322 4.235079 CATCCCTTTGATGTCCTAACCA 57.765 45.455 0.00 0.00 44.91 3.67
7709 12332 6.238648 ACGTAGAAGAAAACATCCCTTTGAT 58.761 36.000 0.00 0.00 0.00 2.57
7710 12333 5.617252 ACGTAGAAGAAAACATCCCTTTGA 58.383 37.500 0.00 0.00 0.00 2.69
7711 12334 5.941948 ACGTAGAAGAAAACATCCCTTTG 57.058 39.130 0.00 0.00 0.00 2.77
7712 12335 5.642491 GCTACGTAGAAGAAAACATCCCTTT 59.358 40.000 26.53 0.00 0.00 3.11
7713 12336 5.176592 GCTACGTAGAAGAAAACATCCCTT 58.823 41.667 26.53 0.00 0.00 3.95
7714 12337 4.222145 TGCTACGTAGAAGAAAACATCCCT 59.778 41.667 26.53 0.00 0.00 4.20
7715 12338 4.329256 GTGCTACGTAGAAGAAAACATCCC 59.671 45.833 26.53 4.06 0.00 3.85
7716 12339 4.329256 GGTGCTACGTAGAAGAAAACATCC 59.671 45.833 26.53 6.80 0.00 3.51
7717 12340 4.031426 CGGTGCTACGTAGAAGAAAACATC 59.969 45.833 26.53 11.40 0.00 3.06
7718 12341 3.924686 CGGTGCTACGTAGAAGAAAACAT 59.075 43.478 26.53 0.00 0.00 2.71
7719 12342 3.004629 TCGGTGCTACGTAGAAGAAAACA 59.995 43.478 26.53 9.57 34.94 2.83
7720 12343 3.568538 TCGGTGCTACGTAGAAGAAAAC 58.431 45.455 26.53 12.25 34.94 2.43
7721 12344 3.921119 TCGGTGCTACGTAGAAGAAAA 57.079 42.857 26.53 3.52 34.94 2.29
7722 12345 4.494690 CGTATCGGTGCTACGTAGAAGAAA 60.495 45.833 26.53 8.19 37.71 2.52
7723 12346 3.001634 CGTATCGGTGCTACGTAGAAGAA 59.998 47.826 26.53 4.38 37.71 2.52
7724 12347 2.541346 CGTATCGGTGCTACGTAGAAGA 59.459 50.000 26.53 17.16 37.71 2.87
7725 12348 2.349249 CCGTATCGGTGCTACGTAGAAG 60.349 54.545 26.53 12.72 42.73 2.85
7726 12349 1.599071 CCGTATCGGTGCTACGTAGAA 59.401 52.381 26.53 13.82 42.73 2.10
7727 12350 1.220529 CCGTATCGGTGCTACGTAGA 58.779 55.000 26.53 8.59 42.73 2.59
7761 12384 3.070446 AGAAATTGCCGTATCCCGTATCA 59.930 43.478 0.00 0.00 33.66 2.15
7877 12501 3.487544 GCAATCAGTGAGGCGGTATTTTC 60.488 47.826 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.