Multiple sequence alignment - TraesCS3B01G047100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G047100 chr3B 100.000 8671 0 0 1 8671 23953781 23945111 0.000000e+00 16013.0
1 TraesCS3B01G047100 chr3B 90.064 312 26 3 3 312 4722020 4721712 4.880000e-107 399.0
2 TraesCS3B01G047100 chr3B 89.274 317 29 3 3 317 3823156 3822843 8.160000e-105 392.0
3 TraesCS3B01G047100 chr3B 87.106 349 38 5 26 370 171810633 171810288 1.060000e-103 388.0
4 TraesCS3B01G047100 chr3A 91.126 6108 346 84 710 6740 20030729 20036717 0.000000e+00 8096.0
5 TraesCS3B01G047100 chr3A 90.614 1108 84 12 6813 7910 20036707 20037804 0.000000e+00 1452.0
6 TraesCS3B01G047100 chr3A 79.804 713 81 21 1 692 513898452 513897782 2.210000e-125 460.0
7 TraesCS3B01G047100 chr3A 87.606 355 24 8 8010 8351 20038658 20039005 2.270000e-105 394.0
8 TraesCS3B01G047100 chr3A 84.533 375 48 7 1 370 702601435 702601066 6.400000e-96 363.0
9 TraesCS3B01G047100 chr3A 85.625 320 35 5 8359 8671 20098225 20098540 8.390000e-85 326.0
10 TraesCS3B01G047100 chr3A 83.732 209 31 3 8466 8671 20101460 20101668 2.470000e-45 195.0
11 TraesCS3B01G047100 chr3D 93.042 4412 201 44 997 5375 16513802 16509464 0.000000e+00 6349.0
12 TraesCS3B01G047100 chr3D 95.776 1373 50 5 5370 6740 16509306 16507940 0.000000e+00 2207.0
13 TraesCS3B01G047100 chr3D 91.952 1168 61 23 6816 7967 16507947 16506797 0.000000e+00 1605.0
14 TraesCS3B01G047100 chr3D 91.911 717 30 9 7967 8671 16503438 16502738 0.000000e+00 977.0
15 TraesCS3B01G047100 chr3D 87.584 298 26 6 8379 8669 16497276 16496983 1.390000e-87 335.0
16 TraesCS3B01G047100 chr3D 84.906 318 37 7 8359 8669 16379512 16379199 2.350000e-80 311.0
17 TraesCS3B01G047100 chr3D 85.052 194 20 6 8484 8671 16364519 16364329 1.150000e-43 189.0
18 TraesCS3B01G047100 chr5B 87.342 237 28 2 109 344 129727752 129727517 3.990000e-68 270.0
19 TraesCS3B01G047100 chr5B 96.774 93 0 3 6729 6818 267758240 267758148 1.510000e-32 152.0
20 TraesCS3B01G047100 chr1A 82.484 314 31 15 1 296 432543401 432543094 4.020000e-63 254.0
21 TraesCS3B01G047100 chr1A 100.000 82 0 0 6738 6819 47824236 47824317 1.510000e-32 152.0
22 TraesCS3B01G047100 chr4A 100.000 85 0 0 6740 6824 683892382 683892298 3.240000e-34 158.0
23 TraesCS3B01G047100 chr6B 98.824 85 1 0 6734 6818 15113001 15113085 1.510000e-32 152.0
24 TraesCS3B01G047100 chr6B 84.127 63 6 4 147 207 11733685 11733745 3.380000e-04 58.4
25 TraesCS3B01G047100 chr2A 97.753 89 0 2 6732 6818 554014820 554014908 1.510000e-32 152.0
26 TraesCS3B01G047100 chr1B 95.789 95 3 1 6724 6818 174602896 174602989 1.510000e-32 152.0
27 TraesCS3B01G047100 chr7B 93.939 99 5 1 6720 6818 255064721 255064624 1.950000e-31 148.0
28 TraesCS3B01G047100 chr4B 95.699 93 3 1 6726 6818 545868006 545868097 1.950000e-31 148.0
29 TraesCS3B01G047100 chr7A 95.604 91 2 1 6727 6815 574091149 574091239 2.520000e-30 145.0
30 TraesCS3B01G047100 chr2B 76.503 183 35 7 8491 8669 793646905 793646727 9.270000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G047100 chr3B 23945111 23953781 8670 True 16013.0 16013 100.00000 1 8671 1 chr3B.!!$R3 8670
1 TraesCS3B01G047100 chr3A 20030729 20039005 8276 False 3314.0 8096 89.78200 710 8351 3 chr3A.!!$F1 7641
2 TraesCS3B01G047100 chr3A 513897782 513898452 670 True 460.0 460 79.80400 1 692 1 chr3A.!!$R1 691
3 TraesCS3B01G047100 chr3A 20098225 20101668 3443 False 260.5 326 84.67850 8359 8671 2 chr3A.!!$F2 312
4 TraesCS3B01G047100 chr3D 16502738 16513802 11064 True 2784.5 6349 93.17025 997 8671 4 chr3D.!!$R4 7674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 301 0.028902 GTGACGGTTGCAACACTTCC 59.971 55.000 29.55 12.19 0.00 3.46 F
442 446 0.108138 CATTCCGGTGTCAGGTCCTC 60.108 60.000 0.00 0.00 0.00 3.71 F
639 661 0.181114 GCCTGATCCACAGCCACATA 59.819 55.000 0.00 0.00 44.52 2.29 F
1691 1751 0.240945 CAAGCCTTGTTTACCTGCCG 59.759 55.000 0.00 0.00 0.00 5.69 F
2148 2208 0.987294 ATTGGTCTCCCAGGTCTGTG 59.013 55.000 0.00 0.00 43.15 3.66 F
2726 2789 1.660333 GGACAAAAAGCGCTGAAGACG 60.660 52.381 12.58 0.00 0.00 4.18 F
3447 3540 2.821969 AGAAACGCATGAAGCTGGAAAT 59.178 40.909 0.00 0.00 42.61 2.17 F
4706 4809 0.527565 GCATTTGGCAGTCCGATGTT 59.472 50.000 0.00 0.00 43.97 2.71 F
4774 4877 2.224597 TGCATGCCATAGTCCATACAGG 60.225 50.000 16.68 0.00 39.47 4.00 F
6368 6647 2.120232 CATACGCACCTCTTGATCGAC 58.880 52.381 0.00 0.00 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1170 1214 0.033601 TGGGATTATTGGCGCCTGTT 60.034 50.000 29.70 14.62 0.00 3.16 R
1255 1302 0.035056 CCCATCTCCACCAGAACCAC 60.035 60.000 0.00 0.00 33.62 4.16 R
1951 2011 0.258194 TTTACGGTGGGTTTGGTGGT 59.742 50.000 0.00 0.00 0.00 4.16 R
2701 2764 1.202830 TCAGCGCTTTTTGTCCCCTTA 60.203 47.619 7.50 0.00 0.00 2.69 R
3163 3246 2.547913 TAGCTGTGCATGCAAAATCG 57.452 45.000 24.58 6.59 0.00 3.34 R
3671 3764 2.877043 GCCATGGCAAAGTGGATAAG 57.123 50.000 32.08 0.00 41.49 1.73 R
4911 5021 2.831685 ACAACGTCAGGAATGCTACA 57.168 45.000 0.00 0.00 0.00 2.74 R
6353 6632 1.446099 TGCGTCGATCAAGAGGTGC 60.446 57.895 0.00 0.00 0.00 5.01 R
6713 6992 0.609957 TGGAACATGCAGGCTCCTTG 60.610 55.000 20.46 0.87 0.00 3.61 R
7692 7978 0.835276 TGCACTCAGAGATGGGGATG 59.165 55.000 3.79 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 21 2.584835 TGGTTGAAGTTCCCCTGATG 57.415 50.000 0.00 0.00 0.00 3.07
22 24 3.075882 TGGTTGAAGTTCCCCTGATGATT 59.924 43.478 0.00 0.00 0.00 2.57
36 38 5.166398 CCTGATGATTGTTGAAGCCTTTTC 58.834 41.667 0.00 0.00 0.00 2.29
37 39 5.047519 CCTGATGATTGTTGAAGCCTTTTCT 60.048 40.000 0.00 0.00 0.00 2.52
38 40 6.151648 CCTGATGATTGTTGAAGCCTTTTCTA 59.848 38.462 0.00 0.00 0.00 2.10
39 41 7.147949 CCTGATGATTGTTGAAGCCTTTTCTAT 60.148 37.037 0.00 0.00 0.00 1.98
40 42 8.806429 TGATGATTGTTGAAGCCTTTTCTATA 57.194 30.769 0.00 0.00 0.00 1.31
41 43 9.412460 TGATGATTGTTGAAGCCTTTTCTATAT 57.588 29.630 0.00 0.00 0.00 0.86
44 46 9.342308 TGATTGTTGAAGCCTTTTCTATATAGG 57.658 33.333 9.89 0.00 0.00 2.57
53 55 6.473397 CCTTTTCTATATAGGCTTGAAGCG 57.527 41.667 11.48 0.00 43.62 4.68
78 81 2.373224 TGTCAATGGTTGCAACACTCA 58.627 42.857 29.55 19.03 0.00 3.41
82 85 5.243507 TGTCAATGGTTGCAACACTCATATT 59.756 36.000 29.55 15.85 0.00 1.28
85 88 4.764679 TGGTTGCAACACTCATATTGTC 57.235 40.909 29.55 9.23 0.00 3.18
94 97 4.569943 ACACTCATATTGTCGTTGAAGCT 58.430 39.130 0.00 0.00 0.00 3.74
95 98 4.997395 ACACTCATATTGTCGTTGAAGCTT 59.003 37.500 0.00 0.00 0.00 3.74
96 99 5.470098 ACACTCATATTGTCGTTGAAGCTTT 59.530 36.000 0.00 0.00 0.00 3.51
135 138 0.710017 CAATTCTTTTCCGCTTGCGC 59.290 50.000 9.71 0.00 0.00 6.09
193 197 3.197265 AGCTTTTGTGTCAAATGGTTGC 58.803 40.909 6.88 0.00 34.50 4.17
195 199 3.373439 GCTTTTGTGTCAAATGGTTGCAA 59.627 39.130 0.00 0.00 34.50 4.08
202 206 4.869861 GTGTCAAATGGTTGCAACTTTTCT 59.130 37.500 27.64 7.60 34.50 2.52
230 234 2.414691 GGCAGTCCGATTGAAGCTTTTC 60.415 50.000 0.00 0.00 0.00 2.29
231 235 2.414691 GCAGTCCGATTGAAGCTTTTCC 60.415 50.000 0.00 0.00 0.00 3.13
233 237 4.253685 CAGTCCGATTGAAGCTTTTCCTA 58.746 43.478 0.00 0.00 0.00 2.94
234 238 4.878397 CAGTCCGATTGAAGCTTTTCCTAT 59.122 41.667 0.00 0.00 0.00 2.57
235 239 5.007136 CAGTCCGATTGAAGCTTTTCCTATC 59.993 44.000 0.00 0.00 0.00 2.08
236 240 5.104735 AGTCCGATTGAAGCTTTTCCTATCT 60.105 40.000 0.00 0.00 0.00 1.98
237 241 6.098409 AGTCCGATTGAAGCTTTTCCTATCTA 59.902 38.462 0.00 0.00 0.00 1.98
238 242 6.201234 GTCCGATTGAAGCTTTTCCTATCTAC 59.799 42.308 0.00 0.00 0.00 2.59
239 243 5.175856 CCGATTGAAGCTTTTCCTATCTACG 59.824 44.000 0.00 0.00 0.00 3.51
240 244 5.175856 CGATTGAAGCTTTTCCTATCTACGG 59.824 44.000 0.00 0.00 0.00 4.02
241 245 5.416271 TTGAAGCTTTTCCTATCTACGGT 57.584 39.130 0.00 0.00 0.00 4.83
242 246 5.416271 TGAAGCTTTTCCTATCTACGGTT 57.584 39.130 0.00 0.00 0.00 4.44
243 247 6.534475 TGAAGCTTTTCCTATCTACGGTTA 57.466 37.500 0.00 0.00 0.00 2.85
244 248 6.938507 TGAAGCTTTTCCTATCTACGGTTAA 58.061 36.000 0.00 0.00 0.00 2.01
245 249 7.388437 TGAAGCTTTTCCTATCTACGGTTAAA 58.612 34.615 0.00 0.00 0.00 1.52
246 250 7.548075 TGAAGCTTTTCCTATCTACGGTTAAAG 59.452 37.037 0.00 0.00 32.56 1.85
247 251 6.346896 AGCTTTTCCTATCTACGGTTAAAGG 58.653 40.000 0.00 0.00 31.35 3.11
248 252 6.070366 AGCTTTTCCTATCTACGGTTAAAGGT 60.070 38.462 0.00 0.00 34.02 3.50
249 253 6.596888 GCTTTTCCTATCTACGGTTAAAGGTT 59.403 38.462 0.00 0.00 31.35 3.50
250 254 7.120285 GCTTTTCCTATCTACGGTTAAAGGTTT 59.880 37.037 0.00 0.00 31.35 3.27
251 255 8.922931 TTTTCCTATCTACGGTTAAAGGTTTT 57.077 30.769 0.00 0.00 0.00 2.43
252 256 8.922931 TTTCCTATCTACGGTTAAAGGTTTTT 57.077 30.769 0.00 0.00 0.00 1.94
293 297 0.660488 TCATGTGACGGTTGCAACAC 59.340 50.000 29.55 19.38 0.00 3.32
296 300 0.730265 TGTGACGGTTGCAACACTTC 59.270 50.000 29.55 21.02 34.81 3.01
297 301 0.028902 GTGACGGTTGCAACACTTCC 59.971 55.000 29.55 12.19 0.00 3.46
304 308 1.135689 GTTGCAACACTTCCATAGGCG 60.136 52.381 24.52 0.00 0.00 5.52
305 309 1.305219 TGCAACACTTCCATAGGCGC 61.305 55.000 0.00 0.00 0.00 6.53
343 347 1.350351 GATGTAGCCATGGCATCTCCT 59.650 52.381 37.18 18.83 44.88 3.69
372 376 2.890474 CAGTGCCGGCGATGGTAC 60.890 66.667 23.90 13.46 44.09 3.34
373 377 4.157120 AGTGCCGGCGATGGTACC 62.157 66.667 23.90 4.43 44.76 3.34
380 384 3.557290 GCGATGGTACCCCCTCCC 61.557 72.222 10.07 0.00 0.00 4.30
393 397 1.623542 CCCTCCCCCTTTGTACCTCG 61.624 65.000 0.00 0.00 0.00 4.63
400 404 0.797249 CCTTTGTACCTCGTCGCTCG 60.797 60.000 0.00 0.00 41.41 5.03
406 410 4.538283 CCTCGTCGCTCGTCGCAT 62.538 66.667 4.23 0.00 40.80 4.73
407 411 2.577112 CTCGTCGCTCGTCGCATT 60.577 61.111 4.23 0.00 40.80 3.56
417 421 2.956987 GTCGCATTGCTGCTGGTT 59.043 55.556 7.12 0.00 46.65 3.67
421 425 1.667151 GCATTGCTGCTGGTTGGAA 59.333 52.632 0.16 0.00 45.32 3.53
442 446 0.108138 CATTCCGGTGTCAGGTCCTC 60.108 60.000 0.00 0.00 0.00 3.71
447 451 2.126424 GTGTCAGGTCCTCGTCGC 60.126 66.667 0.00 0.00 0.00 5.19
467 471 2.125512 GCGACCATGACGAAGGCT 60.126 61.111 14.41 0.00 0.00 4.58
478 482 2.110967 CGAAGGCTGCAGGTCATGG 61.111 63.158 17.12 0.00 0.00 3.66
514 536 3.927548 TGCACGAGCTCACTGGCA 61.928 61.111 15.40 13.83 42.74 4.92
515 537 3.117171 GCACGAGCTCACTGGCAG 61.117 66.667 14.16 14.16 37.91 4.85
519 541 2.746359 GAGCTCACTGGCAGTGGT 59.254 61.111 38.88 26.80 45.94 4.16
522 544 2.047844 CTCACTGGCAGTGGTCGG 60.048 66.667 38.88 24.84 45.94 4.79
529 551 3.127533 GCAGTGGTCGGGCATCAC 61.128 66.667 0.00 0.00 0.00 3.06
536 558 0.388520 GGTCGGGCATCACAAAAAGC 60.389 55.000 0.00 0.00 0.00 3.51
537 559 0.598065 GTCGGGCATCACAAAAAGCT 59.402 50.000 0.00 0.00 0.00 3.74
541 563 1.010419 GGCATCACAAAAAGCTGCGG 61.010 55.000 0.00 0.00 33.69 5.69
610 632 2.494918 GCGACGCCAGTCCTATGT 59.505 61.111 9.14 0.00 44.28 2.29
611 633 1.878522 GCGACGCCAGTCCTATGTG 60.879 63.158 9.14 0.00 44.28 3.21
617 639 1.700042 GCCAGTCCTATGTGAGGGGG 61.700 65.000 0.00 0.00 46.70 5.40
620 642 2.125178 GTCCTATGTGAGGGGGACG 58.875 63.158 0.00 0.00 46.70 4.79
622 644 2.808206 CCTATGTGAGGGGGACGCC 61.808 68.421 0.00 0.00 44.92 5.68
627 649 2.764128 TGAGGGGGACGCCTGATC 60.764 66.667 13.05 7.25 44.92 2.92
632 654 2.187946 GGGACGCCTGATCCACAG 59.812 66.667 0.00 0.00 45.36 3.66
635 657 3.315142 GACGCCTGATCCACAGCCA 62.315 63.158 0.00 0.00 44.52 4.75
639 661 0.181114 GCCTGATCCACAGCCACATA 59.819 55.000 0.00 0.00 44.52 2.29
649 671 3.252484 GCCACATACGACGCGACC 61.252 66.667 15.93 2.61 0.00 4.79
651 673 2.098871 CACATACGACGCGACCGA 59.901 61.111 26.02 13.61 38.29 4.69
654 676 3.880846 ATACGACGCGACCGACCC 61.881 66.667 26.02 2.11 38.29 4.46
661 683 2.248835 CGCGACCGACCCAAGTTTT 61.249 57.895 0.00 0.00 36.29 2.43
662 684 0.945265 CGCGACCGACCCAAGTTTTA 60.945 55.000 0.00 0.00 36.29 1.52
700 722 6.270156 AGGAAACGTTTTCCTTTAACAACA 57.730 33.333 15.89 0.00 46.21 3.33
701 723 6.689554 AGGAAACGTTTTCCTTTAACAACAA 58.310 32.000 15.89 0.00 46.21 2.83
702 724 7.324935 AGGAAACGTTTTCCTTTAACAACAAT 58.675 30.769 15.89 0.00 46.21 2.71
703 725 7.276878 AGGAAACGTTTTCCTTTAACAACAATG 59.723 33.333 15.89 0.00 46.21 2.82
704 726 7.275999 GGAAACGTTTTCCTTTAACAACAATGA 59.724 33.333 15.89 0.00 35.73 2.57
705 727 8.535690 AAACGTTTTCCTTTAACAACAATGAA 57.464 26.923 7.96 0.00 0.00 2.57
706 728 8.710835 AACGTTTTCCTTTAACAACAATGAAT 57.289 26.923 0.00 0.00 0.00 2.57
707 729 8.125728 ACGTTTTCCTTTAACAACAATGAATG 57.874 30.769 0.00 0.00 0.00 2.67
708 730 7.762159 ACGTTTTCCTTTAACAACAATGAATGT 59.238 29.630 0.00 0.00 46.82 2.71
729 751 7.948278 ATGTTAGAGTGTGAACAGTAGTTTC 57.052 36.000 0.00 0.00 38.86 2.78
730 752 6.869695 TGTTAGAGTGTGAACAGTAGTTTCA 58.130 36.000 0.00 0.00 38.30 2.69
731 753 6.755141 TGTTAGAGTGTGAACAGTAGTTTCAC 59.245 38.462 8.04 8.04 40.14 3.18
733 755 3.454375 AGTGTGAACAGTAGTTTCACCG 58.546 45.455 11.62 0.00 40.41 4.94
744 766 1.886542 AGTTTCACCGCATTTTCCTCC 59.113 47.619 0.00 0.00 0.00 4.30
750 772 2.614057 CACCGCATTTTCCTCCTACATC 59.386 50.000 0.00 0.00 0.00 3.06
755 777 2.953466 TTTTCCTCCTACATCGTCGG 57.047 50.000 0.00 0.00 0.00 4.79
760 782 3.824133 TCCTCCTACATCGTCGGAAATA 58.176 45.455 0.00 0.00 27.06 1.40
767 789 6.259167 TCCTACATCGTCGGAAATAAATTTGG 59.741 38.462 0.00 0.00 0.00 3.28
777 799 6.858993 TCGGAAATAAATTTGGTTTTCTCACG 59.141 34.615 16.17 13.13 0.00 4.35
783 805 8.934507 ATAAATTTGGTTTTCTCACGACAAAA 57.065 26.923 0.00 0.00 32.44 2.44
793 815 1.072489 TCACGACAAAACCATGCCCTA 59.928 47.619 0.00 0.00 0.00 3.53
798 820 2.890945 GACAAAACCATGCCCTACAAGT 59.109 45.455 0.00 0.00 0.00 3.16
799 821 4.076394 GACAAAACCATGCCCTACAAGTA 58.924 43.478 0.00 0.00 0.00 2.24
800 822 3.824443 ACAAAACCATGCCCTACAAGTAC 59.176 43.478 0.00 0.00 0.00 2.73
802 824 0.539986 ACCATGCCCTACAAGTACGG 59.460 55.000 0.00 0.00 0.00 4.02
806 828 2.220653 TGCCCTACAAGTACGGTAGT 57.779 50.000 19.66 7.19 37.18 2.73
807 829 3.364460 TGCCCTACAAGTACGGTAGTA 57.636 47.619 19.66 7.80 37.18 1.82
822 855 5.675538 ACGGTAGTACTTCCTCGTATACTT 58.324 41.667 15.69 0.00 0.00 2.24
824 857 5.988561 CGGTAGTACTTCCTCGTATACTTCT 59.011 44.000 15.69 0.00 0.00 2.85
832 865 2.032204 CCTCGTATACTTCTTCCGTCCG 60.032 54.545 0.56 0.00 0.00 4.79
833 866 1.942657 TCGTATACTTCTTCCGTCCGG 59.057 52.381 0.00 0.00 0.00 5.14
846 879 0.452122 CGTCCGGAATTTGTTGTCGC 60.452 55.000 5.23 0.00 0.00 5.19
847 880 0.452122 GTCCGGAATTTGTTGTCGCG 60.452 55.000 5.23 0.00 0.00 5.87
848 881 1.154301 CCGGAATTTGTTGTCGCGG 60.154 57.895 6.13 0.00 0.00 6.46
854 887 2.346099 ATTTGTTGTCGCGGAAATGG 57.654 45.000 6.13 0.00 0.00 3.16
856 889 1.529226 TTGTTGTCGCGGAAATGGAT 58.471 45.000 6.13 0.00 0.00 3.41
857 890 0.801872 TGTTGTCGCGGAAATGGATG 59.198 50.000 6.13 0.00 0.00 3.51
858 891 0.802494 GTTGTCGCGGAAATGGATGT 59.198 50.000 6.13 0.00 0.00 3.06
860 893 2.612212 GTTGTCGCGGAAATGGATGTAT 59.388 45.455 6.13 0.00 0.00 2.29
861 894 2.912771 TGTCGCGGAAATGGATGTATT 58.087 42.857 6.13 0.00 0.00 1.89
862 895 3.275143 TGTCGCGGAAATGGATGTATTT 58.725 40.909 6.13 0.00 33.19 1.40
865 898 4.062293 TCGCGGAAATGGATGTATTTAGG 58.938 43.478 6.13 0.00 30.78 2.69
866 899 3.364964 CGCGGAAATGGATGTATTTAGGC 60.365 47.826 0.00 0.00 30.78 3.93
871 904 6.148811 CGGAAATGGATGTATTTAGGCGTATT 59.851 38.462 0.00 0.00 30.78 1.89
873 906 8.357402 GGAAATGGATGTATTTAGGCGTATTTT 58.643 33.333 0.00 0.00 30.78 1.82
961 1004 4.079980 TCGAACTTTCAGAATGTTGGGA 57.920 40.909 16.99 11.70 37.40 4.37
969 1012 4.764679 TCAGAATGTTGGGAAAATCGTG 57.235 40.909 0.00 0.00 37.40 4.35
970 1013 4.141287 TCAGAATGTTGGGAAAATCGTGT 58.859 39.130 0.00 0.00 37.40 4.49
971 1014 5.309638 TCAGAATGTTGGGAAAATCGTGTA 58.690 37.500 0.00 0.00 37.40 2.90
984 1028 3.671008 ATCGTGTACTTGTAACAGGCA 57.329 42.857 0.00 0.00 33.78 4.75
988 1032 3.805422 CGTGTACTTGTAACAGGCAAAGA 59.195 43.478 0.00 0.00 0.00 2.52
994 1038 2.660572 TGTAACAGGCAAAGAAAGGCA 58.339 42.857 0.00 0.00 0.00 4.75
995 1039 2.360801 TGTAACAGGCAAAGAAAGGCAC 59.639 45.455 0.00 0.00 0.00 5.01
1101 1145 1.118838 CTTCCGGAAGCATCTCTCCT 58.881 55.000 30.28 0.00 0.00 3.69
1102 1146 1.068434 CTTCCGGAAGCATCTCTCCTC 59.932 57.143 30.28 0.00 0.00 3.71
1103 1147 0.757188 TCCGGAAGCATCTCTCCTCC 60.757 60.000 0.00 0.00 0.00 4.30
1116 1160 2.232298 CTCCTCCCCTTGTCGTCAGC 62.232 65.000 0.00 0.00 0.00 4.26
1160 1204 2.211279 AACCCAAGCTCCCTCCCT 59.789 61.111 0.00 0.00 0.00 4.20
1161 1205 1.925972 AACCCAAGCTCCCTCCCTC 60.926 63.158 0.00 0.00 0.00 4.30
1163 1207 3.093172 CCAAGCTCCCTCCCTCCC 61.093 72.222 0.00 0.00 0.00 4.30
1164 1208 2.041928 CAAGCTCCCTCCCTCCCT 59.958 66.667 0.00 0.00 0.00 4.20
1165 1209 2.069430 CAAGCTCCCTCCCTCCCTC 61.069 68.421 0.00 0.00 0.00 4.30
1166 1210 2.260524 AAGCTCCCTCCCTCCCTCT 61.261 63.158 0.00 0.00 0.00 3.69
1167 1211 2.123033 GCTCCCTCCCTCCCTCTC 60.123 72.222 0.00 0.00 0.00 3.20
1168 1212 3.015332 GCTCCCTCCCTCCCTCTCA 62.015 68.421 0.00 0.00 0.00 3.27
1169 1213 1.075600 CTCCCTCCCTCCCTCTCAC 60.076 68.421 0.00 0.00 0.00 3.51
1170 1214 1.862138 TCCCTCCCTCCCTCTCACA 60.862 63.158 0.00 0.00 0.00 3.58
1171 1215 1.081092 CCCTCCCTCCCTCTCACAA 59.919 63.158 0.00 0.00 0.00 3.33
1201 1245 0.780494 TAATCCCAACCCCAACCCCA 60.780 55.000 0.00 0.00 0.00 4.96
1239 1286 4.373116 GAGTCGGCGGCAACTCCA 62.373 66.667 18.71 0.00 43.61 3.86
1240 1287 3.876589 GAGTCGGCGGCAACTCCAA 62.877 63.158 18.71 0.00 43.61 3.53
1557 1613 2.430921 CTCGACCAGGTGACGCAC 60.431 66.667 0.00 1.92 0.00 5.34
1579 1639 2.349886 CGTTAGCTCAGTGAAATCTGGC 59.650 50.000 0.00 0.00 36.25 4.85
1585 1645 1.078143 AGTGAAATCTGGCCGCTCC 60.078 57.895 0.00 0.00 0.00 4.70
1586 1646 2.125147 TGAAATCTGGCCGCTCCG 60.125 61.111 0.00 0.00 37.80 4.63
1587 1647 3.577313 GAAATCTGGCCGCTCCGC 61.577 66.667 0.00 0.00 37.80 5.54
1588 1648 4.101448 AAATCTGGCCGCTCCGCT 62.101 61.111 0.00 0.00 37.80 5.52
1589 1649 4.845580 AATCTGGCCGCTCCGCTG 62.846 66.667 0.00 0.00 37.80 5.18
1613 1673 3.675698 GCTGCTGTTCTAGTGTGAAGTAC 59.324 47.826 0.00 0.00 0.00 2.73
1614 1674 4.559704 GCTGCTGTTCTAGTGTGAAGTACT 60.560 45.833 0.00 0.00 0.00 2.73
1644 1704 6.882610 TGCAAAATCTGGTGACATATATCC 57.117 37.500 0.00 0.00 41.51 2.59
1650 1710 1.132657 TGGTGACATATATCCGGGGGT 60.133 52.381 0.00 0.00 33.40 4.95
1686 1746 5.119743 CGAGTTAGTACAAGCCTTGTTTACC 59.880 44.000 16.40 2.23 42.22 2.85
1689 1749 3.146847 AGTACAAGCCTTGTTTACCTGC 58.853 45.455 16.40 0.00 42.22 4.85
1691 1751 0.240945 CAAGCCTTGTTTACCTGCCG 59.759 55.000 0.00 0.00 0.00 5.69
1714 1774 7.675637 GCCGTAGTAGAACCATAATTTGACAAC 60.676 40.741 0.00 0.00 0.00 3.32
1737 1797 3.068732 CGGCAACTGATCTAAGAGATGGA 59.931 47.826 0.00 0.00 34.53 3.41
1947 2007 2.942804 TGCTTGTGTCCAGGAATTTGA 58.057 42.857 0.00 0.00 0.00 2.69
1951 2011 3.855255 TGTGTCCAGGAATTTGACTGA 57.145 42.857 0.00 0.00 36.86 3.41
2011 2071 6.142564 CAGACTCCTGTAAATGGATGTCCAC 61.143 48.000 3.41 0.00 41.14 4.02
2018 2078 2.687200 TGGATGTCCACGGAGGGG 60.687 66.667 0.00 0.00 42.01 4.79
2069 2129 1.134220 GGTGATACTCGAATTGGGCCA 60.134 52.381 0.00 0.00 0.00 5.36
2099 2159 5.653507 CATGTTGGATTTGTGAAATCGGAT 58.346 37.500 0.00 0.00 46.45 4.18
2148 2208 0.987294 ATTGGTCTCCCAGGTCTGTG 59.013 55.000 0.00 0.00 43.15 3.66
2191 2251 7.393234 TGGATCAAATTTCGGTTTCTAGTCAAT 59.607 33.333 0.00 0.00 0.00 2.57
2222 2282 4.180057 CGATCTGTCTCCTTTTTCCTGAG 58.820 47.826 0.00 0.00 0.00 3.35
2313 2373 4.179298 GGCCTTTTCGTACGACTAATCTT 58.821 43.478 19.36 0.00 0.00 2.40
2381 2441 6.343716 TGATTATTTTGCTTGTGGTGATGT 57.656 33.333 0.00 0.00 0.00 3.06
2434 2494 5.882557 CAGGTTCATACAGAGGTAAAAGCAT 59.117 40.000 0.00 0.00 33.06 3.79
2476 2537 6.835819 TTTAGCTCTACATACAGTGACAGT 57.164 37.500 0.00 0.00 0.00 3.55
2477 2538 4.974368 AGCTCTACATACAGTGACAGTC 57.026 45.455 0.00 0.00 0.00 3.51
2479 2540 4.397730 AGCTCTACATACAGTGACAGTCTG 59.602 45.833 1.31 0.00 38.68 3.51
2480 2541 4.396478 GCTCTACATACAGTGACAGTCTGA 59.604 45.833 6.91 0.00 36.81 3.27
2481 2542 5.675071 GCTCTACATACAGTGACAGTCTGAC 60.675 48.000 6.91 0.00 36.81 3.51
2482 2543 5.313712 TCTACATACAGTGACAGTCTGACA 58.686 41.667 10.88 3.50 36.81 3.58
2483 2544 4.511617 ACATACAGTGACAGTCTGACAG 57.488 45.455 10.88 4.45 36.81 3.51
2484 2545 4.145052 ACATACAGTGACAGTCTGACAGA 58.855 43.478 10.88 0.00 36.81 3.41
2485 2546 4.217334 ACATACAGTGACAGTCTGACAGAG 59.783 45.833 5.10 4.77 36.81 3.35
2486 2547 2.937519 ACAGTGACAGTCTGACAGAGA 58.062 47.619 5.10 0.00 36.81 3.10
2497 2558 7.116075 ACAGTCTGACAGAGAGTATATCTTGT 58.884 38.462 5.10 0.00 38.84 3.16
2499 2560 7.281999 CAGTCTGACAGAGAGTATATCTTGTGA 59.718 40.741 5.10 0.00 38.84 3.58
2598 2659 5.176958 ACTTCGATTACTCAAACCAACTTCG 59.823 40.000 0.00 0.00 0.00 3.79
2668 2729 6.107901 TGTGCCTAAAATGTTTGCCTATTT 57.892 33.333 0.00 0.00 0.00 1.40
2701 2764 3.846588 ACCAAGGAATACCAGAGTGACAT 59.153 43.478 0.00 0.00 38.94 3.06
2726 2789 1.660333 GGACAAAAAGCGCTGAAGACG 60.660 52.381 12.58 0.00 0.00 4.18
2743 2806 5.295540 TGAAGACGTCATGTGAAAACATTCA 59.704 36.000 19.50 10.94 0.00 2.57
2812 2875 6.580476 CATAATCGCACAAACTTTTGGTTTC 58.420 36.000 6.65 0.00 45.26 2.78
2937 3000 7.584108 TGACAGATACAAGTTTGCTGTAAATG 58.416 34.615 0.00 0.00 39.68 2.32
2983 3046 5.407387 CCCTTGCTGATTTTTCATTTGTCAG 59.593 40.000 0.00 0.00 39.35 3.51
3002 3065 9.502091 TTTGTCAGAAGTATTGCATAGTTACTT 57.498 29.630 10.05 10.05 38.52 2.24
3074 3157 7.427989 AAGTATGCCTTCCATTTCATTGATT 57.572 32.000 0.00 0.00 35.34 2.57
3447 3540 2.821969 AGAAACGCATGAAGCTGGAAAT 59.178 40.909 0.00 0.00 42.61 2.17
3689 3782 5.603170 ATTTCTTATCCACTTTGCCATGG 57.397 39.130 7.63 7.63 37.32 3.66
3708 3801 5.756347 CCATGGCATATTTGTTTTCCTGATG 59.244 40.000 0.00 0.00 0.00 3.07
3742 3835 7.230712 ACAAAAGTAGTTCAGGAATGGGTTTAG 59.769 37.037 0.00 0.00 0.00 1.85
3751 3844 4.887655 CAGGAATGGGTTTAGTTGGGATAC 59.112 45.833 0.00 0.00 0.00 2.24
3879 3972 6.127281 GGTTTACAAACAAAAGGAGAAAGGGA 60.127 38.462 7.12 0.00 40.63 4.20
3881 3974 5.598416 ACAAACAAAAGGAGAAAGGGAAG 57.402 39.130 0.00 0.00 0.00 3.46
3882 3975 5.269189 ACAAACAAAAGGAGAAAGGGAAGA 58.731 37.500 0.00 0.00 0.00 2.87
3888 3981 8.547481 ACAAAAGGAGAAAGGGAAGAAAATTA 57.453 30.769 0.00 0.00 0.00 1.40
4033 4127 1.664321 ATCAGGCGTACGAGGTGGTC 61.664 60.000 21.65 0.00 0.00 4.02
4037 4131 1.287041 GGCGTACGAGGTGGTCAAAC 61.287 60.000 21.65 0.00 0.00 2.93
4173 4272 3.901222 TCACTCTGTCCTGGTATGTTTGA 59.099 43.478 0.00 0.00 0.00 2.69
4187 4286 6.183361 TGGTATGTTTGACACTTCTAAGGTGA 60.183 38.462 0.00 0.00 38.01 4.02
4268 4367 0.973632 TGCCTGTGAATGACGGTAGT 59.026 50.000 0.00 0.00 0.00 2.73
4269 4368 1.337728 TGCCTGTGAATGACGGTAGTG 60.338 52.381 0.00 0.00 0.00 2.74
4270 4369 2.007049 GCCTGTGAATGACGGTAGTGG 61.007 57.143 0.00 0.00 0.00 4.00
4271 4370 1.548719 CCTGTGAATGACGGTAGTGGA 59.451 52.381 0.00 0.00 0.00 4.02
4338 4441 8.372877 AGCCACTATCTTCAACTGCTATATAT 57.627 34.615 0.00 0.00 0.00 0.86
4656 4759 7.995463 TGTAGCAATTTTTGTAAAGTCCAAC 57.005 32.000 0.00 0.00 0.00 3.77
4657 4760 7.548097 TGTAGCAATTTTTGTAAAGTCCAACA 58.452 30.769 0.00 0.00 0.00 3.33
4706 4809 0.527565 GCATTTGGCAGTCCGATGTT 59.472 50.000 0.00 0.00 43.97 2.71
4708 4811 2.610232 GCATTTGGCAGTCCGATGTTTT 60.610 45.455 0.00 0.00 43.97 2.43
4774 4877 2.224597 TGCATGCCATAGTCCATACAGG 60.225 50.000 16.68 0.00 39.47 4.00
4796 4899 4.022589 GGATGATTATGCCAACCACTGATG 60.023 45.833 0.00 0.00 0.00 3.07
5350 5461 7.303998 GGTAAGCATCATTCTTCAGCATATTC 58.696 38.462 0.00 0.00 0.00 1.75
5351 5462 6.954487 AAGCATCATTCTTCAGCATATTCA 57.046 33.333 0.00 0.00 0.00 2.57
5352 5463 6.315091 AGCATCATTCTTCAGCATATTCAC 57.685 37.500 0.00 0.00 0.00 3.18
5376 5653 2.744202 CAGCAGTTGCGGAAACTCTATT 59.256 45.455 0.00 0.00 46.60 1.73
5483 5760 6.951062 TTTGACAAATGGATAAGACACACA 57.049 33.333 0.00 0.00 0.00 3.72
5494 5771 9.857656 ATGGATAAGACACACAAATAGAATGAT 57.142 29.630 0.00 0.00 0.00 2.45
5516 5793 4.569943 TCAGCTTCAAGGACTACAACATC 58.430 43.478 0.00 0.00 0.00 3.06
5530 5807 7.120138 GGACTACAACATCCTCGGATTTTTAAA 59.880 37.037 0.00 0.00 31.62 1.52
5621 5898 5.866633 GCTATGTATGATGTACAGAGGCTTC 59.133 44.000 0.33 0.00 37.28 3.86
5627 5904 8.164070 TGTATGATGTACAGAGGCTTCTCTATA 58.836 37.037 0.33 0.00 45.45 1.31
5703 5980 8.764524 AGATGCAAGAACTAAAGTACTAACTG 57.235 34.615 0.00 0.00 35.62 3.16
5777 6054 8.367156 AGTGATGCCAAATAAAATAAACACTGT 58.633 29.630 0.00 0.00 33.51 3.55
5870 6147 6.363357 GCAACATGAAGGTAACACTGATTTTC 59.637 38.462 0.00 0.00 41.41 2.29
5926 6205 3.751175 TCGCAAATCGTGGAAAATCTCTT 59.249 39.130 0.00 0.00 39.67 2.85
5940 6219 5.791336 AAATCTCTTGGTTTCTTTCCCAC 57.209 39.130 0.00 0.00 0.00 4.61
5946 6225 3.108847 TGGTTTCTTTCCCACCTTGTT 57.891 42.857 0.00 0.00 0.00 2.83
6353 6632 6.864685 TGGCCTATTATCGTTTTCTACATACG 59.135 38.462 3.32 0.00 36.67 3.06
6365 6644 4.569761 TCTACATACGCACCTCTTGATC 57.430 45.455 0.00 0.00 0.00 2.92
6368 6647 2.120232 CATACGCACCTCTTGATCGAC 58.880 52.381 0.00 0.00 0.00 4.20
6379 6658 4.982295 CCTCTTGATCGACGCACAATTATA 59.018 41.667 0.00 0.00 0.00 0.98
6382 6661 7.328493 CCTCTTGATCGACGCACAATTATATTA 59.672 37.037 0.00 0.00 0.00 0.98
6416 6695 7.512130 TCATTCTTGTTCATGCCTGATAGTAT 58.488 34.615 0.00 0.00 0.00 2.12
6454 6733 7.611770 TGTTTGTAGATACTGCAGACATTAGT 58.388 34.615 23.35 0.00 36.61 2.24
6457 6736 7.646548 TGTAGATACTGCAGACATTAGTTCT 57.353 36.000 23.35 11.64 0.00 3.01
6623 6902 2.682856 TGCATCCTTTAATGTTCGCCTC 59.317 45.455 0.00 0.00 0.00 4.70
6695 6974 5.468540 ACTGCACTCAACTTCTGTATGTA 57.531 39.130 0.00 0.00 0.00 2.29
6713 6992 9.096160 CTGTATGTATCATGATTAATCCAGAGC 57.904 37.037 14.65 8.24 0.00 4.09
6740 7019 5.068987 GGAGCCTGCATGTTCCATAATTAAA 59.931 40.000 17.88 0.00 0.00 1.52
6741 7020 6.406849 GGAGCCTGCATGTTCCATAATTAAAA 60.407 38.462 17.88 0.00 0.00 1.52
6742 7021 6.945218 AGCCTGCATGTTCCATAATTAAAAA 58.055 32.000 0.00 0.00 0.00 1.94
6766 7045 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
6767 7046 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
6768 7047 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
6769 7048 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
6770 7049 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
6776 7055 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
6777 7056 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
6778 7057 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
6779 7058 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
6782 7061 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
6794 7073 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
6795 7074 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
6796 7075 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
6797 7076 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
6798 7077 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
6799 7078 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
6800 7079 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
6801 7080 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
6802 7081 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
6803 7082 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
6804 7083 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
6805 7084 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
6806 7085 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
6807 7086 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
6808 7087 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
6809 7088 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
6810 7089 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
6811 7090 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
6812 7091 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
6891 7171 2.630158 CTCCTGTGGATGCTCTGAAAG 58.370 52.381 0.00 0.00 0.00 2.62
6914 7194 8.460831 AAGTTCAAAGAAACACAATAACACAC 57.539 30.769 0.00 0.00 0.00 3.82
6923 7203 8.257306 AGAAACACAATAACACACCAAATTTCT 58.743 29.630 0.00 0.00 0.00 2.52
6989 7269 1.203389 AGTGTAGGCCTGTAGGGGAAA 60.203 52.381 17.99 0.00 35.18 3.13
7309 7591 5.904080 CGTGAGTGTGAGAAGAAAATCAAAC 59.096 40.000 0.00 0.00 34.44 2.93
7351 7633 1.002430 CACCTAGGCTGCTCTGTTGAA 59.998 52.381 9.30 0.00 0.00 2.69
7354 7636 3.519510 ACCTAGGCTGCTCTGTTGAATTA 59.480 43.478 9.30 0.00 0.00 1.40
7361 7643 4.427312 CTGCTCTGTTGAATTATTTGGCC 58.573 43.478 0.00 0.00 0.00 5.36
7470 7756 2.910688 TCGAGAAGCCCCATTGATAC 57.089 50.000 0.00 0.00 0.00 2.24
7604 7890 3.918220 CTCGTCATCGCGGCAAGC 61.918 66.667 6.13 0.00 43.95 4.01
7646 7932 1.373497 GATCGCGTATGCCCTCAGG 60.373 63.158 5.77 0.00 38.08 3.86
7703 7989 1.759459 GACCCGGTCATCCCCATCTC 61.759 65.000 13.05 0.00 32.09 2.75
7704 7990 1.460305 CCCGGTCATCCCCATCTCT 60.460 63.158 0.00 0.00 0.00 3.10
7716 8002 1.300481 CCATCTCTGAGTGCATGCAG 58.700 55.000 23.41 9.73 0.00 4.41
7718 8005 0.910338 ATCTCTGAGTGCATGCAGGT 59.090 50.000 23.41 11.94 33.05 4.00
7722 8009 1.632948 CTGAGTGCATGCAGGTGTCG 61.633 60.000 23.41 3.90 0.00 4.35
7741 8028 4.976224 TCGTAAGATCCGAGATTGTTCA 57.024 40.909 0.00 0.00 45.01 3.18
7742 8029 5.515797 TCGTAAGATCCGAGATTGTTCAT 57.484 39.130 0.00 0.00 45.01 2.57
7743 8030 5.281727 TCGTAAGATCCGAGATTGTTCATG 58.718 41.667 0.00 0.00 45.01 3.07
7744 8031 5.067283 TCGTAAGATCCGAGATTGTTCATGA 59.933 40.000 0.00 0.00 45.01 3.07
7750 8046 3.996363 TCCGAGATTGTTCATGAACTGTG 59.004 43.478 32.57 18.54 41.67 3.66
7758 8054 2.455674 TCATGAACTGTGAACTCCCG 57.544 50.000 0.00 0.00 0.00 5.14
7852 8153 1.692519 ACGTTGTGTTCCTCCTAAGCT 59.307 47.619 0.00 0.00 0.00 3.74
7891 8192 0.250901 AGGTCCATGTGCAGGTGAAC 60.251 55.000 0.00 0.00 0.00 3.18
7958 8259 8.438676 TCTAATCTAAAATAGAAACCTGCTGC 57.561 34.615 0.00 0.00 38.50 5.25
8094 11997 4.208686 CCTCCCCGACGTAGCTGC 62.209 72.222 0.00 0.00 0.00 5.25
8105 12009 1.738099 GTAGCTGCGGTCCAGTGTG 60.738 63.158 0.00 0.00 43.71 3.82
8106 12010 2.207229 TAGCTGCGGTCCAGTGTGT 61.207 57.895 0.00 0.00 43.71 3.72
8109 12013 0.174845 GCTGCGGTCCAGTGTGTATA 59.825 55.000 0.00 0.00 43.71 1.47
8110 12014 1.404986 GCTGCGGTCCAGTGTGTATAA 60.405 52.381 0.00 0.00 43.71 0.98
8111 12015 2.540515 CTGCGGTCCAGTGTGTATAAG 58.459 52.381 0.00 0.00 36.79 1.73
8113 12017 3.090790 TGCGGTCCAGTGTGTATAAGTA 58.909 45.455 0.00 0.00 0.00 2.24
8119 12027 7.682741 GCGGTCCAGTGTGTATAAGTAATAAGA 60.683 40.741 0.00 0.00 0.00 2.10
8120 12028 7.861372 CGGTCCAGTGTGTATAAGTAATAAGAG 59.139 40.741 0.00 0.00 0.00 2.85
8121 12029 8.693625 GGTCCAGTGTGTATAAGTAATAAGAGT 58.306 37.037 0.00 0.00 0.00 3.24
8133 12041 4.714308 AGTAATAAGAGTCCAAGAGCTGCT 59.286 41.667 0.00 0.00 0.00 4.24
8135 12043 2.470983 AAGAGTCCAAGAGCTGCTTC 57.529 50.000 2.53 0.00 33.60 3.86
8161 12070 2.586079 CCGACGTAGCATGGCCAG 60.586 66.667 13.05 4.54 0.00 4.85
8162 12071 2.184322 CGACGTAGCATGGCCAGT 59.816 61.111 13.05 1.14 0.00 4.00
8164 12073 0.595053 CGACGTAGCATGGCCAGTAG 60.595 60.000 13.05 4.74 0.00 2.57
8309 12230 0.692419 AGGAATCCCATCTCACGCCT 60.692 55.000 0.00 0.00 33.88 5.52
8340 12261 1.324005 GCTGCCTTCTCTCCTACGGT 61.324 60.000 0.00 0.00 0.00 4.83
8342 12263 1.030488 TGCCTTCTCTCCTACGGTCG 61.030 60.000 0.00 0.00 0.00 4.79
8377 12298 2.267961 GCCAACTCCGGTGGTAGG 59.732 66.667 10.99 8.25 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 38 7.016361 ACAAAAACGCTTCAAGCCTATATAG 57.984 36.000 3.08 2.46 38.18 1.31
37 39 6.596106 TGACAAAAACGCTTCAAGCCTATATA 59.404 34.615 3.08 0.00 38.18 0.86
38 40 5.414454 TGACAAAAACGCTTCAAGCCTATAT 59.586 36.000 3.08 0.00 38.18 0.86
39 41 4.757657 TGACAAAAACGCTTCAAGCCTATA 59.242 37.500 3.08 0.00 38.18 1.31
40 42 3.568007 TGACAAAAACGCTTCAAGCCTAT 59.432 39.130 3.08 0.00 38.18 2.57
41 43 2.946329 TGACAAAAACGCTTCAAGCCTA 59.054 40.909 3.08 0.00 38.18 3.93
42 44 1.748493 TGACAAAAACGCTTCAAGCCT 59.252 42.857 3.08 0.00 38.18 4.58
43 45 2.202295 TGACAAAAACGCTTCAAGCC 57.798 45.000 3.08 0.00 38.18 4.35
44 46 3.060339 CCATTGACAAAAACGCTTCAAGC 60.060 43.478 0.00 0.00 38.02 4.01
45 47 4.111916 ACCATTGACAAAAACGCTTCAAG 58.888 39.130 0.00 0.00 31.72 3.02
46 48 4.116747 ACCATTGACAAAAACGCTTCAA 57.883 36.364 0.00 0.00 32.71 2.69
48 50 3.302415 GCAACCATTGACAAAAACGCTTC 60.302 43.478 0.00 0.00 0.00 3.86
51 53 1.929836 TGCAACCATTGACAAAAACGC 59.070 42.857 0.00 0.00 0.00 4.84
53 55 4.391523 AGTGTTGCAACCATTGACAAAAAC 59.608 37.500 26.14 12.81 31.82 2.43
135 138 4.025401 GCTTCAACCACGGCACCG 62.025 66.667 7.71 7.71 46.03 4.94
193 197 3.860641 ACTGCCCAACAAAGAAAAGTTG 58.139 40.909 0.00 0.00 43.51 3.16
195 199 2.430694 GGACTGCCCAACAAAGAAAAGT 59.569 45.455 0.00 0.00 34.14 2.66
202 206 0.958091 CAATCGGACTGCCCAACAAA 59.042 50.000 0.00 0.00 34.14 2.83
265 269 2.218603 ACCGTCACATGAAACAACTCC 58.781 47.619 0.00 0.00 0.00 3.85
275 279 0.662619 AGTGTTGCAACCGTCACATG 59.337 50.000 26.14 0.00 33.84 3.21
293 297 2.280186 GACCCGCGCCTATGGAAG 60.280 66.667 0.00 0.00 0.00 3.46
313 317 4.488790 GCTACATCCTGCCATGGG 57.511 61.111 15.13 0.00 0.00 4.00
325 329 0.471191 CAGGAGATGCCATGGCTACA 59.529 55.000 35.53 18.08 42.51 2.74
327 331 0.471191 CACAGGAGATGCCATGGCTA 59.529 55.000 35.53 22.71 42.51 3.93
328 332 1.226542 CACAGGAGATGCCATGGCT 59.773 57.895 35.53 21.86 42.51 4.75
335 339 1.818785 GCTGAGCCACAGGAGATGC 60.819 63.158 9.91 0.00 45.82 3.91
355 359 2.890474 GTACCATCGCCGGCACTG 60.890 66.667 28.98 21.86 0.00 3.66
372 376 2.314215 GGTACAAAGGGGGAGGGGG 61.314 68.421 0.00 0.00 0.00 5.40
373 377 1.230182 AGGTACAAAGGGGGAGGGG 60.230 63.158 0.00 0.00 0.00 4.79
380 384 0.458025 GAGCGACGAGGTACAAAGGG 60.458 60.000 0.00 0.00 0.00 3.95
400 404 1.443194 CAACCAGCAGCAATGCGAC 60.443 57.895 0.00 0.00 40.27 5.19
406 410 1.455402 TGCTTCCAACCAGCAGCAA 60.455 52.632 0.00 0.00 42.49 3.91
407 411 2.195411 TGCTTCCAACCAGCAGCA 59.805 55.556 0.00 0.00 42.49 4.41
421 425 1.296715 GACCTGACACCGGAATGCT 59.703 57.895 9.46 0.00 0.00 3.79
433 437 3.733960 CACGCGACGAGGACCTGA 61.734 66.667 15.93 0.00 0.00 3.86
447 451 2.444624 CCTTCGTCATGGTCGCACG 61.445 63.158 0.00 0.00 34.78 5.34
453 457 1.376424 CTGCAGCCTTCGTCATGGT 60.376 57.895 0.00 0.00 0.00 3.55
459 463 1.376424 CATGACCTGCAGCCTTCGT 60.376 57.895 8.66 0.00 0.00 3.85
460 464 2.110967 CCATGACCTGCAGCCTTCG 61.111 63.158 8.66 0.00 0.00 3.79
467 471 4.758251 CCGTCGCCATGACCTGCA 62.758 66.667 0.00 0.00 45.23 4.41
492 513 3.418068 GTGAGCTCGTGCACTGCC 61.418 66.667 22.27 15.99 42.74 4.85
495 516 2.341543 CCAGTGAGCTCGTGCACT 59.658 61.111 16.19 4.48 45.62 4.40
514 536 0.179004 TTTTGTGATGCCCGACCACT 60.179 50.000 0.00 0.00 0.00 4.00
515 537 0.671251 TTTTTGTGATGCCCGACCAC 59.329 50.000 0.00 0.00 0.00 4.16
519 541 0.597568 CAGCTTTTTGTGATGCCCGA 59.402 50.000 0.00 0.00 0.00 5.14
522 544 1.010419 CCGCAGCTTTTTGTGATGCC 61.010 55.000 0.00 0.00 33.32 4.40
529 551 4.722855 CGCCCCCGCAGCTTTTTG 62.723 66.667 0.00 0.00 34.03 2.44
608 630 3.924013 ATCAGGCGTCCCCCTCACA 62.924 63.158 0.00 0.00 31.24 3.58
609 631 3.083997 ATCAGGCGTCCCCCTCAC 61.084 66.667 0.00 0.00 31.24 3.51
610 632 2.764128 GATCAGGCGTCCCCCTCA 60.764 66.667 0.00 0.00 31.24 3.86
611 633 3.551407 GGATCAGGCGTCCCCCTC 61.551 72.222 0.00 0.00 31.24 4.30
622 644 1.136891 TCGTATGTGGCTGTGGATCAG 59.863 52.381 0.00 0.00 46.12 2.90
627 649 2.452813 GCGTCGTATGTGGCTGTGG 61.453 63.158 0.00 0.00 0.00 4.17
632 654 3.252484 GGTCGCGTCGTATGTGGC 61.252 66.667 5.77 0.00 0.00 5.01
635 657 2.099062 GTCGGTCGCGTCGTATGT 59.901 61.111 19.63 0.00 0.00 2.29
649 671 1.918868 GCCGGCTAAAACTTGGGTCG 61.919 60.000 22.15 0.00 0.00 4.79
651 673 1.969589 CGCCGGCTAAAACTTGGGT 60.970 57.895 26.68 0.00 0.00 4.51
654 676 2.202298 CGCGCCGGCTAAAACTTG 60.202 61.111 26.68 7.15 36.88 3.16
655 677 4.097863 GCGCGCCGGCTAAAACTT 62.098 61.111 26.68 0.00 36.88 2.66
698 720 6.767902 ACTGTTCACACTCTAACATTCATTGT 59.232 34.615 0.00 0.00 41.53 2.71
699 721 7.194607 ACTGTTCACACTCTAACATTCATTG 57.805 36.000 0.00 0.00 35.21 2.82
700 722 8.150945 ACTACTGTTCACACTCTAACATTCATT 58.849 33.333 0.00 0.00 35.21 2.57
701 723 7.671302 ACTACTGTTCACACTCTAACATTCAT 58.329 34.615 0.00 0.00 35.21 2.57
702 724 7.050970 ACTACTGTTCACACTCTAACATTCA 57.949 36.000 0.00 0.00 35.21 2.57
703 725 7.948278 AACTACTGTTCACACTCTAACATTC 57.052 36.000 0.00 0.00 35.21 2.67
704 726 7.985184 TGAAACTACTGTTCACACTCTAACATT 59.015 33.333 0.00 0.00 35.21 2.71
705 727 7.438459 GTGAAACTACTGTTCACACTCTAACAT 59.562 37.037 11.40 0.00 38.74 2.71
706 728 6.755141 GTGAAACTACTGTTCACACTCTAACA 59.245 38.462 11.40 0.00 38.74 2.41
707 729 6.200475 GGTGAAACTACTGTTCACACTCTAAC 59.800 42.308 16.59 0.00 40.10 2.34
708 730 6.278363 GGTGAAACTACTGTTCACACTCTAA 58.722 40.000 16.59 0.00 40.10 2.10
729 751 2.107950 TGTAGGAGGAAAATGCGGTG 57.892 50.000 0.00 0.00 0.00 4.94
730 752 2.741878 CGATGTAGGAGGAAAATGCGGT 60.742 50.000 0.00 0.00 0.00 5.68
731 753 1.867233 CGATGTAGGAGGAAAATGCGG 59.133 52.381 0.00 0.00 0.00 5.69
733 755 2.540101 CGACGATGTAGGAGGAAAATGC 59.460 50.000 0.00 0.00 0.00 3.56
744 766 7.011828 ACCAAATTTATTTCCGACGATGTAG 57.988 36.000 0.00 0.00 0.00 2.74
750 772 6.858993 TGAGAAAACCAAATTTATTTCCGACG 59.141 34.615 14.67 0.00 33.35 5.12
755 777 8.568732 TGTCGTGAGAAAACCAAATTTATTTC 57.431 30.769 12.11 12.11 45.01 2.17
760 782 7.056002 GTTTTGTCGTGAGAAAACCAAATTT 57.944 32.000 19.15 0.00 44.12 1.82
777 799 2.890945 ACTTGTAGGGCATGGTTTTGTC 59.109 45.455 0.00 0.00 0.00 3.18
783 805 0.539986 CCGTACTTGTAGGGCATGGT 59.460 55.000 6.59 0.00 0.00 3.55
788 810 3.699779 GTACTACCGTACTTGTAGGGC 57.300 52.381 16.55 10.07 42.16 5.19
798 820 6.406692 AGTATACGAGGAAGTACTACCGTA 57.593 41.667 15.97 15.97 37.01 4.02
799 821 5.283457 AGTATACGAGGAAGTACTACCGT 57.717 43.478 13.52 13.52 0.00 4.83
800 822 5.988561 AGAAGTATACGAGGAAGTACTACCG 59.011 44.000 0.00 0.16 0.00 4.02
802 824 7.307101 CGGAAGAAGTATACGAGGAAGTACTAC 60.307 44.444 0.00 0.00 0.00 2.73
806 828 5.431765 ACGGAAGAAGTATACGAGGAAGTA 58.568 41.667 0.00 0.00 0.00 2.24
807 829 4.268359 ACGGAAGAAGTATACGAGGAAGT 58.732 43.478 0.00 0.00 0.00 3.01
809 831 3.629398 GGACGGAAGAAGTATACGAGGAA 59.371 47.826 0.00 0.00 0.00 3.36
811 833 2.032204 CGGACGGAAGAAGTATACGAGG 60.032 54.545 0.00 0.00 0.00 4.63
812 834 2.032204 CCGGACGGAAGAAGTATACGAG 60.032 54.545 4.40 0.00 37.50 4.18
814 836 1.942657 TCCGGACGGAAGAAGTATACG 59.057 52.381 11.57 0.00 42.05 3.06
832 865 2.409152 TTTCCGCGACAACAAATTCC 57.591 45.000 8.23 0.00 0.00 3.01
833 866 2.661195 CCATTTCCGCGACAACAAATTC 59.339 45.455 8.23 0.00 0.00 2.17
836 869 1.309950 TCCATTTCCGCGACAACAAA 58.690 45.000 8.23 0.00 0.00 2.83
838 871 0.801872 CATCCATTTCCGCGACAACA 59.198 50.000 8.23 0.00 0.00 3.33
839 872 0.802494 ACATCCATTTCCGCGACAAC 59.198 50.000 8.23 0.00 0.00 3.32
846 879 3.813166 ACGCCTAAATACATCCATTTCCG 59.187 43.478 0.00 0.00 30.84 4.30
847 880 7.448748 AATACGCCTAAATACATCCATTTCC 57.551 36.000 0.00 0.00 30.84 3.13
910 953 8.655935 ACTCCCTATGTGAAGAAATTTTGAAT 57.344 30.769 0.00 0.00 0.00 2.57
911 954 9.010029 GTACTCCCTATGTGAAGAAATTTTGAA 57.990 33.333 0.00 0.00 0.00 2.69
912 955 8.160765 TGTACTCCCTATGTGAAGAAATTTTGA 58.839 33.333 0.00 0.00 0.00 2.69
913 956 8.335532 TGTACTCCCTATGTGAAGAAATTTTG 57.664 34.615 0.00 0.00 0.00 2.44
914 957 9.533831 AATGTACTCCCTATGTGAAGAAATTTT 57.466 29.630 0.00 0.00 0.00 1.82
916 959 7.495934 CGAATGTACTCCCTATGTGAAGAAATT 59.504 37.037 0.00 0.00 0.00 1.82
917 960 6.986817 CGAATGTACTCCCTATGTGAAGAAAT 59.013 38.462 0.00 0.00 0.00 2.17
919 962 5.655090 TCGAATGTACTCCCTATGTGAAGAA 59.345 40.000 0.00 0.00 0.00 2.52
920 963 5.198207 TCGAATGTACTCCCTATGTGAAGA 58.802 41.667 0.00 0.00 0.00 2.87
921 964 5.515797 TCGAATGTACTCCCTATGTGAAG 57.484 43.478 0.00 0.00 0.00 3.02
922 965 5.421056 AGTTCGAATGTACTCCCTATGTGAA 59.579 40.000 0.00 0.00 0.00 3.18
923 966 4.954202 AGTTCGAATGTACTCCCTATGTGA 59.046 41.667 0.00 0.00 0.00 3.58
925 968 5.934402 AAGTTCGAATGTACTCCCTATGT 57.066 39.130 0.00 0.00 0.00 2.29
926 969 6.338146 TGAAAGTTCGAATGTACTCCCTATG 58.662 40.000 0.00 0.00 0.00 2.23
927 970 6.380274 TCTGAAAGTTCGAATGTACTCCCTAT 59.620 38.462 0.00 0.00 33.76 2.57
928 971 5.713389 TCTGAAAGTTCGAATGTACTCCCTA 59.287 40.000 0.00 0.00 33.76 3.53
961 1004 4.817464 TGCCTGTTACAAGTACACGATTTT 59.183 37.500 0.00 0.00 0.00 1.82
969 1012 5.758924 CCTTTCTTTGCCTGTTACAAGTAC 58.241 41.667 0.00 0.00 0.00 2.73
970 1013 4.277423 GCCTTTCTTTGCCTGTTACAAGTA 59.723 41.667 0.00 0.00 0.00 2.24
971 1014 3.068165 GCCTTTCTTTGCCTGTTACAAGT 59.932 43.478 0.00 0.00 0.00 3.16
984 1028 5.179555 GTCGTTCATCTTAGTGCCTTTCTTT 59.820 40.000 0.00 0.00 0.00 2.52
988 1032 4.002906 TGTCGTTCATCTTAGTGCCTTT 57.997 40.909 0.00 0.00 0.00 3.11
1101 1145 3.691342 CCGCTGACGACAAGGGGA 61.691 66.667 12.23 0.00 43.93 4.81
1160 1204 3.059982 CGCCTGTTGTGAGAGGGA 58.940 61.111 0.00 0.00 36.83 4.20
1161 1205 2.743928 GCGCCTGTTGTGAGAGGG 60.744 66.667 0.00 0.00 36.83 4.30
1163 1207 0.957395 ATTGGCGCCTGTTGTGAGAG 60.957 55.000 29.70 0.00 0.00 3.20
1164 1208 0.323302 TATTGGCGCCTGTTGTGAGA 59.677 50.000 29.70 0.00 0.00 3.27
1165 1209 1.164411 TTATTGGCGCCTGTTGTGAG 58.836 50.000 29.70 0.00 0.00 3.51
1166 1210 1.742831 GATTATTGGCGCCTGTTGTGA 59.257 47.619 29.70 1.01 0.00 3.58
1167 1211 1.202290 GGATTATTGGCGCCTGTTGTG 60.202 52.381 29.70 0.00 0.00 3.33
1168 1212 1.102978 GGATTATTGGCGCCTGTTGT 58.897 50.000 29.70 11.12 0.00 3.32
1169 1213 0.385390 GGGATTATTGGCGCCTGTTG 59.615 55.000 29.70 0.00 0.00 3.33
1170 1214 0.033601 TGGGATTATTGGCGCCTGTT 60.034 50.000 29.70 14.62 0.00 3.16
1171 1215 0.033601 TTGGGATTATTGGCGCCTGT 60.034 50.000 29.70 18.41 0.00 4.00
1201 1245 1.064389 GCTGGGGTTATCTCTGGCTTT 60.064 52.381 0.00 0.00 0.00 3.51
1248 1295 4.643387 ACCAGAACCACAGGCCGC 62.643 66.667 0.00 0.00 0.00 6.53
1250 1297 2.282462 CCACCAGAACCACAGGCC 60.282 66.667 0.00 0.00 0.00 5.19
1251 1298 1.302832 CTCCACCAGAACCACAGGC 60.303 63.158 0.00 0.00 0.00 4.85
1252 1299 0.987294 ATCTCCACCAGAACCACAGG 59.013 55.000 0.00 0.00 33.62 4.00
1253 1300 1.339438 CCATCTCCACCAGAACCACAG 60.339 57.143 0.00 0.00 33.62 3.66
1254 1301 0.692476 CCATCTCCACCAGAACCACA 59.308 55.000 0.00 0.00 33.62 4.17
1255 1302 0.035056 CCCATCTCCACCAGAACCAC 60.035 60.000 0.00 0.00 33.62 4.16
1256 1303 1.852157 GCCCATCTCCACCAGAACCA 61.852 60.000 0.00 0.00 33.62 3.67
1257 1304 1.077429 GCCCATCTCCACCAGAACC 60.077 63.158 0.00 0.00 33.62 3.62
1258 1305 1.450312 CGCCCATCTCCACCAGAAC 60.450 63.158 0.00 0.00 33.62 3.01
1259 1306 2.989639 CGCCCATCTCCACCAGAA 59.010 61.111 0.00 0.00 33.62 3.02
1260 1307 3.785859 GCGCCCATCTCCACCAGA 61.786 66.667 0.00 0.00 34.78 3.86
1261 1308 4.864334 GGCGCCCATCTCCACCAG 62.864 72.222 18.11 0.00 0.00 4.00
1364 1414 3.086600 CCTCCTCCTCCTGCACCC 61.087 72.222 0.00 0.00 0.00 4.61
1365 1415 3.086600 CCCTCCTCCTCCTGCACC 61.087 72.222 0.00 0.00 0.00 5.01
1366 1416 3.086600 CCCCTCCTCCTCCTGCAC 61.087 72.222 0.00 0.00 0.00 4.57
1367 1417 4.421554 CCCCCTCCTCCTCCTGCA 62.422 72.222 0.00 0.00 0.00 4.41
1370 1420 1.088896 TACTCCCCCTCCTCCTCCT 59.911 63.158 0.00 0.00 0.00 3.69
1539 1595 2.596338 TGCGTCACCTGGTCGAGA 60.596 61.111 11.62 0.00 0.00 4.04
1557 1613 2.932614 CCAGATTTCACTGAGCTAACGG 59.067 50.000 0.00 0.00 39.94 4.44
1563 1619 1.986575 GCGGCCAGATTTCACTGAGC 61.987 60.000 2.24 0.00 39.94 4.26
1564 1624 0.392193 AGCGGCCAGATTTCACTGAG 60.392 55.000 2.24 0.00 39.94 3.35
1587 1647 0.668706 ACACTAGAACAGCAGCGCAG 60.669 55.000 11.47 1.31 0.00 5.18
1588 1648 0.945743 CACACTAGAACAGCAGCGCA 60.946 55.000 11.47 0.00 0.00 6.09
1589 1649 0.667487 TCACACTAGAACAGCAGCGC 60.667 55.000 0.00 0.00 0.00 5.92
1590 1650 1.723542 CTTCACACTAGAACAGCAGCG 59.276 52.381 0.00 0.00 0.00 5.18
1601 1661 4.279922 TGCAAGCTACAGTACTTCACACTA 59.720 41.667 0.00 0.00 0.00 2.74
1613 1673 3.503363 TCACCAGATTTTGCAAGCTACAG 59.497 43.478 0.00 0.00 0.00 2.74
1614 1674 3.253188 GTCACCAGATTTTGCAAGCTACA 59.747 43.478 0.00 0.00 0.00 2.74
1644 1704 0.320421 CGTAATCCATAGCACCCCCG 60.320 60.000 0.00 0.00 0.00 5.73
1650 1710 6.947644 TGTACTAACTCGTAATCCATAGCA 57.052 37.500 0.00 0.00 0.00 3.49
1686 1746 6.018994 GTCAAATTATGGTTCTACTACGGCAG 60.019 42.308 0.00 0.00 0.00 4.85
1689 1749 7.201582 GGTTGTCAAATTATGGTTCTACTACGG 60.202 40.741 0.00 0.00 0.00 4.02
1691 1751 7.201582 CCGGTTGTCAAATTATGGTTCTACTAC 60.202 40.741 0.00 0.00 0.00 2.73
1714 1774 3.388308 CATCTCTTAGATCAGTTGCCGG 58.612 50.000 0.00 0.00 31.32 6.13
1737 1797 5.184096 TCAAAATCTAGCGAGTGAGAAGAGT 59.816 40.000 0.00 0.00 0.00 3.24
1817 1877 1.446272 GCCGAACTCTGGTTCCTCG 60.446 63.158 3.74 0.00 46.46 4.63
1819 1879 2.593956 GGGCCGAACTCTGGTTCCT 61.594 63.158 0.00 0.00 46.46 3.36
1824 1884 4.452733 GTCCGGGCCGAACTCTGG 62.453 72.222 30.79 8.87 0.00 3.86
1947 2007 1.229076 GGTGGGTTTGGTGGTCAGT 59.771 57.895 0.00 0.00 0.00 3.41
1951 2011 0.258194 TTTACGGTGGGTTTGGTGGT 59.742 50.000 0.00 0.00 0.00 4.16
2018 2078 0.453390 CAGAAAGCAATTCCCGAGCC 59.547 55.000 0.00 0.00 38.94 4.70
2069 2129 5.918426 TCACAAATCCAACATGCACATAT 57.082 34.783 0.00 0.00 0.00 1.78
2099 2159 5.452496 GCCAGCTGTACAATCTGAAGATAGA 60.452 44.000 20.38 0.00 33.73 1.98
2191 2251 1.134699 GGAGACAGATCGGCATGACAA 60.135 52.381 0.00 0.00 0.00 3.18
2222 2282 1.197721 CCTGTCACCAAACATCGCTTC 59.802 52.381 0.00 0.00 0.00 3.86
2313 2373 3.818210 CACTGGTTGCTTGTATTACCACA 59.182 43.478 0.00 0.00 35.82 4.17
2381 2441 6.767902 GCAACATCCAGGATCTATCAGTAAAA 59.232 38.462 0.00 0.00 0.00 1.52
2450 2511 6.631016 TGTCACTGTATGTAGAGCTAAAAGG 58.369 40.000 0.00 0.00 0.00 3.11
2476 2537 8.628280 CATTCACAAGATATACTCTCTGTCAGA 58.372 37.037 1.78 1.78 31.03 3.27
2477 2538 7.381948 GCATTCACAAGATATACTCTCTGTCAG 59.618 40.741 0.00 0.00 31.03 3.51
2479 2540 7.205992 TGCATTCACAAGATATACTCTCTGTC 58.794 38.462 0.00 0.00 31.03 3.51
2480 2541 7.117285 TGCATTCACAAGATATACTCTCTGT 57.883 36.000 0.00 0.00 31.03 3.41
2481 2542 6.145858 GCTGCATTCACAAGATATACTCTCTG 59.854 42.308 0.00 0.00 31.03 3.35
2482 2543 6.041865 AGCTGCATTCACAAGATATACTCTCT 59.958 38.462 1.02 0.00 31.03 3.10
2483 2544 6.222389 AGCTGCATTCACAAGATATACTCTC 58.778 40.000 1.02 0.00 31.03 3.20
2484 2545 6.172136 AGCTGCATTCACAAGATATACTCT 57.828 37.500 1.02 0.00 34.96 3.24
2485 2546 6.705381 AGAAGCTGCATTCACAAGATATACTC 59.295 38.462 1.02 0.00 0.00 2.59
2486 2547 6.482641 CAGAAGCTGCATTCACAAGATATACT 59.517 38.462 1.02 0.00 0.00 2.12
2598 2659 3.939592 GGTAGTTTTGAGGCCTGTATGAC 59.060 47.826 12.00 1.91 0.00 3.06
2668 2729 7.127186 TCTGGTATTCCTTGGTGATTCTAATCA 59.873 37.037 1.23 1.23 37.57 2.57
2701 2764 1.202830 TCAGCGCTTTTTGTCCCCTTA 60.203 47.619 7.50 0.00 0.00 2.69
2773 2836 4.388469 GCGATTATGCACCAAATTGTGTTT 59.612 37.500 0.00 0.00 38.52 2.83
2888 2951 9.730420 TCATCTAACAAACTTTGAGTTTAAAGC 57.270 29.630 8.55 0.00 45.84 3.51
2937 3000 5.041287 GGAAGAAAAAGCACAACTGTTACC 58.959 41.667 0.00 0.00 0.00 2.85
3074 3157 7.226325 CCAATTACCAAATCAGCAACAGAAAAA 59.774 33.333 0.00 0.00 0.00 1.94
3157 3240 4.665212 CTGTGCATGCAAAATCGTCTAAT 58.335 39.130 24.58 0.00 0.00 1.73
3163 3246 2.547913 TAGCTGTGCATGCAAAATCG 57.452 45.000 24.58 6.59 0.00 3.34
3240 3325 8.680903 GTGATCATTTGTTAGGACAGAATGAAT 58.319 33.333 0.00 8.46 41.26 2.57
3499 3592 9.627123 CAGTTTATTTAGGATGGACAAATAGGA 57.373 33.333 0.00 0.00 0.00 2.94
3668 3761 3.195396 GCCATGGCAAAGTGGATAAGAAA 59.805 43.478 32.08 0.00 41.49 2.52
3671 3764 2.877043 GCCATGGCAAAGTGGATAAG 57.123 50.000 32.08 0.00 41.49 1.73
3689 3782 5.063817 GCCAACATCAGGAAAACAAATATGC 59.936 40.000 0.00 0.00 0.00 3.14
3708 3801 4.319261 CCTGAACTACTTTTGTACGCCAAC 60.319 45.833 0.00 0.00 31.20 3.77
3742 3835 4.949856 ACATGTCAATGGAAGTATCCCAAC 59.050 41.667 0.00 0.00 45.95 3.77
3751 3844 4.696877 TCACTTGCTACATGTCAATGGAAG 59.303 41.667 0.00 10.65 38.19 3.46
3854 3947 6.046593 CCCTTTCTCCTTTTGTTTGTAAACC 58.953 40.000 5.15 0.00 38.11 3.27
4033 4127 8.184192 AGAGATATTGCCGTTTTTATGAGTTTG 58.816 33.333 0.00 0.00 0.00 2.93
4037 4131 6.260936 ACCAGAGATATTGCCGTTTTTATGAG 59.739 38.462 0.00 0.00 0.00 2.90
4173 4272 6.655003 CCAACAATACATCACCTTAGAAGTGT 59.345 38.462 0.00 0.00 36.58 3.55
4319 4422 8.985922 AGCCATGATATATAGCAGTTGAAGATA 58.014 33.333 6.84 0.00 0.00 1.98
4338 4441 4.038522 GCTAGTTCACAGAGATAGCCATGA 59.961 45.833 0.00 0.00 34.19 3.07
4423 4526 3.847184 TGACCAATTCCCTATACACCACA 59.153 43.478 0.00 0.00 0.00 4.17
4424 4527 4.497291 TGACCAATTCCCTATACACCAC 57.503 45.455 0.00 0.00 0.00 4.16
4730 4833 7.174772 TGCAACTATATTTGAACAGCAAGAAGA 59.825 33.333 6.98 0.00 37.87 2.87
4774 4877 4.823442 TCATCAGTGGTTGGCATAATCATC 59.177 41.667 0.00 0.00 0.00 2.92
4911 5021 2.831685 ACAACGTCAGGAATGCTACA 57.168 45.000 0.00 0.00 0.00 2.74
5168 5279 9.685276 AATATGATGTAGATTCCACAGAAACAA 57.315 29.630 0.00 0.00 35.09 2.83
5364 5475 7.010552 CAGTGAAGAATGGTAATAGAGTTTCCG 59.989 40.741 0.00 0.00 0.00 4.30
5365 5476 7.281100 CCAGTGAAGAATGGTAATAGAGTTTCC 59.719 40.741 0.00 0.00 0.00 3.13
5483 5760 7.344913 AGTCCTTGAAGCTGATCATTCTATTT 58.655 34.615 9.79 0.00 0.00 1.40
5494 5771 4.563580 GGATGTTGTAGTCCTTGAAGCTGA 60.564 45.833 0.00 0.00 0.00 4.26
5516 5793 3.431626 GGGGCCAATTTAAAAATCCGAGG 60.432 47.826 4.39 0.00 0.00 4.63
5530 5807 1.992557 TCTTTAGTGAGTGGGGCCAAT 59.007 47.619 4.39 0.00 0.00 3.16
5621 5898 8.247562 GGGTGTCTAATATGCTGTCTTATAGAG 58.752 40.741 0.00 0.00 0.00 2.43
5627 5904 4.384208 GGTGGGTGTCTAATATGCTGTCTT 60.384 45.833 0.00 0.00 0.00 3.01
5870 6147 2.741612 TGCAAAATGAGCTTCCAAACG 58.258 42.857 0.00 0.00 0.00 3.60
5926 6205 2.838637 ACAAGGTGGGAAAGAAACCA 57.161 45.000 0.00 0.00 36.37 3.67
5940 6219 5.248870 AGCACAGAAACAAAGTAACAAGG 57.751 39.130 0.00 0.00 0.00 3.61
5946 6225 6.425577 AACGTAAAGCACAGAAACAAAGTA 57.574 33.333 0.00 0.00 0.00 2.24
6353 6632 1.446099 TGCGTCGATCAAGAGGTGC 60.446 57.895 0.00 0.00 0.00 5.01
6382 6661 8.755977 AGGCATGAACAAGAATGAAGAAATAAT 58.244 29.630 0.00 0.00 0.00 1.28
6395 6674 6.484364 TCATACTATCAGGCATGAACAAGA 57.516 37.500 4.62 0.00 39.39 3.02
6396 6675 7.874528 TGTATCATACTATCAGGCATGAACAAG 59.125 37.037 4.62 6.18 39.39 3.16
6454 6733 7.330262 TCAGTAAGATGCACATTACATCAGAA 58.670 34.615 19.59 2.31 45.19 3.02
6457 6736 8.510243 AATTCAGTAAGATGCACATTACATCA 57.490 30.769 19.59 7.56 45.19 3.07
6623 6902 5.425630 TGAGAGTTCAGATGATCAACATGG 58.574 41.667 0.00 0.00 39.56 3.66
6695 6974 6.196918 TCCTTGCTCTGGATTAATCATGAT 57.803 37.500 17.07 1.18 0.00 2.45
6713 6992 0.609957 TGGAACATGCAGGCTCCTTG 60.610 55.000 20.46 0.87 0.00 3.61
6743 7022 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
6744 7023 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
6745 7024 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
6746 7025 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
6747 7026 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
6748 7027 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
6749 7028 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
6750 7029 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
6751 7030 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
6752 7031 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
6777 7056 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
6778 7057 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
6779 7058 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
6780 7059 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
6781 7060 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
6782 7061 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
6783 7062 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
6784 7063 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
6785 7064 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
6786 7065 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
6787 7066 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
6788 7067 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
6789 7068 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
6790 7069 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
6791 7070 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
6792 7071 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
6793 7072 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
6794 7073 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
6795 7074 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
6796 7075 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
6817 7096 9.596308 ACTTGTAGTATTTTTCCTGGGTTAATT 57.404 29.630 0.00 0.00 0.00 1.40
6818 7097 9.020731 CACTTGTAGTATTTTTCCTGGGTTAAT 57.979 33.333 0.00 0.00 0.00 1.40
6819 7098 8.219178 TCACTTGTAGTATTTTTCCTGGGTTAA 58.781 33.333 0.00 0.00 0.00 2.01
6820 7099 7.747690 TCACTTGTAGTATTTTTCCTGGGTTA 58.252 34.615 0.00 0.00 0.00 2.85
6821 7100 6.607019 TCACTTGTAGTATTTTTCCTGGGTT 58.393 36.000 0.00 0.00 0.00 4.11
6822 7101 6.183361 ACTCACTTGTAGTATTTTTCCTGGGT 60.183 38.462 0.00 0.00 0.00 4.51
6823 7102 6.149474 CACTCACTTGTAGTATTTTTCCTGGG 59.851 42.308 0.00 0.00 0.00 4.45
6891 7171 6.809196 TGGTGTGTTATTGTGTTTCTTTGAAC 59.191 34.615 0.00 0.00 0.00 3.18
6973 7253 5.491078 CCATAATATTTCCCCTACAGGCCTA 59.509 44.000 3.98 0.00 0.00 3.93
6976 7256 4.291249 TCCCATAATATTTCCCCTACAGGC 59.709 45.833 0.00 0.00 0.00 4.85
6989 7269 9.827198 TCTGGCTAAATTTTCATCCCATAATAT 57.173 29.630 0.00 0.00 0.00 1.28
7470 7756 7.485913 GTCCTGCATAAATTGAGTAACATGTTG 59.514 37.037 21.42 1.32 0.00 3.33
7646 7932 1.941999 GCTGGTTGCCATTGCTCCTC 61.942 60.000 5.52 0.00 38.71 3.71
7692 7978 0.835276 TGCACTCAGAGATGGGGATG 59.165 55.000 3.79 0.00 0.00 3.51
7703 7989 1.632948 CGACACCTGCATGCACTCAG 61.633 60.000 18.46 7.02 0.00 3.35
7704 7990 1.668793 CGACACCTGCATGCACTCA 60.669 57.895 18.46 0.00 0.00 3.41
7716 8002 3.181489 ACAATCTCGGATCTTACGACACC 60.181 47.826 0.00 0.00 36.25 4.16
7718 8005 4.157105 TGAACAATCTCGGATCTTACGACA 59.843 41.667 0.00 0.00 36.25 4.35
7722 8009 6.758886 AGTTCATGAACAATCTCGGATCTTAC 59.241 38.462 33.92 7.62 43.47 2.34
7730 8017 5.596268 TTCACAGTTCATGAACAATCTCG 57.404 39.130 33.92 19.11 43.47 4.04
7739 8026 1.967779 TCGGGAGTTCACAGTTCATGA 59.032 47.619 0.00 0.00 0.00 3.07
7740 8027 2.029020 TCTCGGGAGTTCACAGTTCATG 60.029 50.000 0.00 0.00 0.00 3.07
7741 8028 2.248248 TCTCGGGAGTTCACAGTTCAT 58.752 47.619 0.00 0.00 0.00 2.57
7742 8029 1.699730 TCTCGGGAGTTCACAGTTCA 58.300 50.000 0.00 0.00 0.00 3.18
7743 8030 2.996621 CAATCTCGGGAGTTCACAGTTC 59.003 50.000 0.00 0.00 0.00 3.01
7744 8031 2.872038 GCAATCTCGGGAGTTCACAGTT 60.872 50.000 0.00 0.00 0.00 3.16
7750 8046 2.159043 TCATGAGCAATCTCGGGAGTTC 60.159 50.000 0.00 0.00 42.26 3.01
7758 8054 7.114953 CACAAATATGCAATCATGAGCAATCTC 59.885 37.037 13.02 0.00 44.88 2.75
7852 8153 4.015084 CCTCTAGGTCGAAAGTTCCTGTA 58.985 47.826 1.91 0.00 37.58 2.74
7891 8192 4.245660 TCAGCAAAAGTCTCTGTATTCGG 58.754 43.478 0.00 0.00 0.00 4.30
7958 8259 1.689273 CTCCCTCTTAACCCCAGATCG 59.311 57.143 0.00 0.00 0.00 3.69
8020 11923 5.862924 TTCTACTACATGCAAAAGTCAGC 57.137 39.130 0.00 0.00 0.00 4.26
8077 11980 4.208686 GCAGCTACGTCGGGGAGG 62.209 72.222 0.00 0.00 0.00 4.30
8094 11997 7.709947 TCTTATTACTTATACACACTGGACCG 58.290 38.462 0.00 0.00 0.00 4.79
8105 12009 9.685828 CAGCTCTTGGACTCTTATTACTTATAC 57.314 37.037 0.00 0.00 0.00 1.47
8106 12010 8.361139 GCAGCTCTTGGACTCTTATTACTTATA 58.639 37.037 0.00 0.00 0.00 0.98
8109 12013 5.188751 AGCAGCTCTTGGACTCTTATTACTT 59.811 40.000 0.00 0.00 0.00 2.24
8110 12014 4.714308 AGCAGCTCTTGGACTCTTATTACT 59.286 41.667 0.00 0.00 0.00 2.24
8111 12015 5.017294 AGCAGCTCTTGGACTCTTATTAC 57.983 43.478 0.00 0.00 0.00 1.89
8113 12017 4.224818 AGAAGCAGCTCTTGGACTCTTATT 59.775 41.667 0.00 0.00 34.56 1.40
8119 12027 1.643310 AGAGAAGCAGCTCTTGGACT 58.357 50.000 0.00 0.00 42.41 3.85
8133 12041 2.164827 TGCTACGTCGGCATAAAGAGAA 59.835 45.455 11.30 0.00 34.56 2.87
8135 12043 2.203800 TGCTACGTCGGCATAAAGAG 57.796 50.000 11.30 0.00 34.56 2.85
8161 12070 3.494336 CCGTGCTGCTGCTGCTAC 61.494 66.667 27.67 21.88 40.48 3.58
8352 12273 2.885644 CGGAGTTGGCGATGACCG 60.886 66.667 0.00 0.00 42.21 4.79
8353 12274 2.511600 CCGGAGTTGGCGATGACC 60.512 66.667 0.00 0.00 0.00 4.02
8354 12275 2.100631 CACCGGAGTTGGCGATGAC 61.101 63.158 9.46 0.00 0.00 3.06
8355 12276 2.264480 CACCGGAGTTGGCGATGA 59.736 61.111 9.46 0.00 0.00 2.92
8356 12277 2.233605 TACCACCGGAGTTGGCGATG 62.234 60.000 9.46 0.00 0.00 3.84
8357 12278 1.956629 CTACCACCGGAGTTGGCGAT 61.957 60.000 9.46 0.00 0.00 4.58
8358 12279 2.601067 TACCACCGGAGTTGGCGA 60.601 61.111 9.46 0.00 0.00 5.54
8359 12280 2.125673 CTACCACCGGAGTTGGCG 60.126 66.667 9.46 0.00 0.00 5.69
8360 12281 2.267961 CCTACCACCGGAGTTGGC 59.732 66.667 9.46 0.00 0.00 4.52
8361 12282 1.916777 ACCCTACCACCGGAGTTGG 60.917 63.158 9.46 15.29 0.00 3.77
8362 12283 1.295423 CACCCTACCACCGGAGTTG 59.705 63.158 9.46 6.14 0.00 3.16
8481 12408 2.173382 GTCGGTCATGTTGTGCGC 59.827 61.111 0.00 0.00 0.00 6.09
8482 12409 1.944699 CTCGTCGGTCATGTTGTGCG 61.945 60.000 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.