Multiple sequence alignment - TraesCS3B01G046800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G046800 chr3B 100.000 3978 0 0 1 3978 23788087 23784110 0.000000e+00 7347.0
1 TraesCS3B01G046800 chr3B 100.000 2984 0 0 4256 7239 23783832 23780849 0.000000e+00 5511.0
2 TraesCS3B01G046800 chr3B 97.600 625 13 2 1 624 444142653 444143276 0.000000e+00 1070.0
3 TraesCS3B01G046800 chr3B 96.926 618 10 2 1 617 20816713 20817322 0.000000e+00 1027.0
4 TraesCS3B01G046800 chr3B 88.571 70 8 0 652 721 804144866 804144797 1.290000e-12 86.1
5 TraesCS3B01G046800 chr3B 91.379 58 4 1 2207 2264 791257897 791257953 2.170000e-10 78.7
6 TraesCS3B01G046800 chr3D 92.045 3017 173 42 4259 7239 16317485 16314500 0.000000e+00 4180.0
7 TraesCS3B01G046800 chr3D 88.079 1426 69 32 907 2268 16319544 16318156 0.000000e+00 1598.0
8 TraesCS3B01G046800 chr3D 96.812 345 9 1 2262 2604 16318069 16317725 6.300000e-160 575.0
9 TraesCS3B01G046800 chr3D 94.545 220 10 2 3760 3978 16317733 16317515 9.000000e-89 339.0
10 TraesCS3B01G046800 chr3D 93.506 77 5 0 2180 2256 409015394 409015470 1.650000e-21 115.0
11 TraesCS3B01G046800 chr3D 90.698 43 2 1 4780 4822 607367746 607367706 1.000000e-03 56.5
12 TraesCS3B01G046800 chr3A 91.558 2997 186 32 4272 7239 20133279 20136237 0.000000e+00 4071.0
13 TraesCS3B01G046800 chr3A 89.920 1756 97 38 918 2604 20131077 20132821 0.000000e+00 2189.0
14 TraesCS3B01G046800 chr3A 94.064 219 12 1 3760 3978 20132813 20133030 1.510000e-86 331.0
15 TraesCS3B01G046800 chr3A 87.143 70 9 0 652 721 69961666 69961597 6.020000e-11 80.5
16 TraesCS3B01G046800 chr3A 85.938 64 7 2 654 716 745634249 745634311 4.690000e-07 67.6
17 TraesCS3B01G046800 chr4B 96.897 1160 35 1 2603 3762 660663998 660662840 0.000000e+00 1941.0
18 TraesCS3B01G046800 chr4B 95.772 1159 44 3 2604 3759 74674446 74673290 0.000000e+00 1864.0
19 TraesCS3B01G046800 chr4B 96.629 623 20 1 1 622 17056354 17056976 0.000000e+00 1033.0
20 TraesCS3B01G046800 chr5B 96.469 1161 37 3 2603 3760 33951969 33950810 0.000000e+00 1914.0
21 TraesCS3B01G046800 chr5B 85.859 99 10 4 2161 2258 493127259 493127354 1.280000e-17 102.0
22 TraesCS3B01G046800 chr5B 100.000 28 0 0 4256 4283 640270536 640270563 1.300000e-02 52.8
23 TraesCS3B01G046800 chr1B 95.886 1118 43 3 2598 3714 408618342 408617227 0.000000e+00 1807.0
24 TraesCS3B01G046800 chr1B 97.087 618 16 2 1 617 58495565 58494949 0.000000e+00 1040.0
25 TraesCS3B01G046800 chr6B 96.327 1089 39 1 2604 3692 547004830 547005917 0.000000e+00 1788.0
26 TraesCS3B01G046800 chr6B 92.069 1160 87 5 2604 3763 437481273 437482427 0.000000e+00 1628.0
27 TraesCS3B01G046800 chr6B 97.735 618 13 1 1 617 703250255 703249638 0.000000e+00 1062.0
28 TraesCS3B01G046800 chr4A 95.481 1018 44 2 2602 3619 659019282 659018267 0.000000e+00 1624.0
29 TraesCS3B01G046800 chr4A 88.889 45 5 0 6373 6417 427678348 427678392 1.000000e-03 56.5
30 TraesCS3B01G046800 chr7B 90.026 1173 109 7 2598 3768 690596108 690597274 0.000000e+00 1511.0
31 TraesCS3B01G046800 chr7B 90.017 1172 110 6 2598 3768 690565414 690566579 0.000000e+00 1509.0
32 TraesCS3B01G046800 chr7B 97.896 618 9 2 1 617 394765363 394764749 0.000000e+00 1066.0
33 TraesCS3B01G046800 chr7B 97.573 618 14 1 1 617 237926382 237925765 0.000000e+00 1057.0
34 TraesCS3B01G046800 chr7B 93.042 618 18 9 1 617 732179729 732179136 0.000000e+00 880.0
35 TraesCS3B01G046800 chr7B 80.435 92 17 1 625 715 438392022 438392113 1.300000e-07 69.4
36 TraesCS3B01G046800 chr4D 92.593 621 44 2 1 619 8875115 8874495 0.000000e+00 891.0
37 TraesCS3B01G046800 chr7D 91.545 615 49 3 1 612 528806812 528806198 0.000000e+00 845.0
38 TraesCS3B01G046800 chr6D 90.722 97 9 0 622 718 97573366 97573270 5.890000e-26 130.0
39 TraesCS3B01G046800 chr6A 90.698 86 6 2 2172 2257 168004057 168004140 5.940000e-21 113.0
40 TraesCS3B01G046800 chr6A 86.598 97 10 3 2174 2268 16594908 16594813 3.570000e-18 104.0
41 TraesCS3B01G046800 chr2D 91.463 82 7 0 2174 2255 451974410 451974329 5.940000e-21 113.0
42 TraesCS3B01G046800 chrUn 89.011 91 9 1 6909 6998 30300967 30301057 2.130000e-20 111.0
43 TraesCS3B01G046800 chr5A 89.535 86 8 1 2181 2266 321667488 321667572 2.760000e-19 108.0
44 TraesCS3B01G046800 chr5A 81.579 114 15 5 4256 4363 568463994 568464107 1.000000e-13 89.8
45 TraesCS3B01G046800 chr2B 100.000 28 0 0 4256 4283 679304189 679304216 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G046800 chr3B 23780849 23788087 7238 True 6429 7347 100.000000 1 7239 2 chr3B.!!$R2 7238
1 TraesCS3B01G046800 chr3B 444142653 444143276 623 False 1070 1070 97.600000 1 624 1 chr3B.!!$F2 623
2 TraesCS3B01G046800 chr3B 20816713 20817322 609 False 1027 1027 96.926000 1 617 1 chr3B.!!$F1 616
3 TraesCS3B01G046800 chr3D 16314500 16319544 5044 True 1673 4180 92.870250 907 7239 4 chr3D.!!$R2 6332
4 TraesCS3B01G046800 chr3A 20131077 20136237 5160 False 2197 4071 91.847333 918 7239 3 chr3A.!!$F2 6321
5 TraesCS3B01G046800 chr4B 660662840 660663998 1158 True 1941 1941 96.897000 2603 3762 1 chr4B.!!$R2 1159
6 TraesCS3B01G046800 chr4B 74673290 74674446 1156 True 1864 1864 95.772000 2604 3759 1 chr4B.!!$R1 1155
7 TraesCS3B01G046800 chr4B 17056354 17056976 622 False 1033 1033 96.629000 1 622 1 chr4B.!!$F1 621
8 TraesCS3B01G046800 chr5B 33950810 33951969 1159 True 1914 1914 96.469000 2603 3760 1 chr5B.!!$R1 1157
9 TraesCS3B01G046800 chr1B 408617227 408618342 1115 True 1807 1807 95.886000 2598 3714 1 chr1B.!!$R2 1116
10 TraesCS3B01G046800 chr1B 58494949 58495565 616 True 1040 1040 97.087000 1 617 1 chr1B.!!$R1 616
11 TraesCS3B01G046800 chr6B 547004830 547005917 1087 False 1788 1788 96.327000 2604 3692 1 chr6B.!!$F2 1088
12 TraesCS3B01G046800 chr6B 437481273 437482427 1154 False 1628 1628 92.069000 2604 3763 1 chr6B.!!$F1 1159
13 TraesCS3B01G046800 chr6B 703249638 703250255 617 True 1062 1062 97.735000 1 617 1 chr6B.!!$R1 616
14 TraesCS3B01G046800 chr4A 659018267 659019282 1015 True 1624 1624 95.481000 2602 3619 1 chr4A.!!$R1 1017
15 TraesCS3B01G046800 chr7B 690596108 690597274 1166 False 1511 1511 90.026000 2598 3768 1 chr7B.!!$F3 1170
16 TraesCS3B01G046800 chr7B 690565414 690566579 1165 False 1509 1509 90.017000 2598 3768 1 chr7B.!!$F2 1170
17 TraesCS3B01G046800 chr7B 394764749 394765363 614 True 1066 1066 97.896000 1 617 1 chr7B.!!$R2 616
18 TraesCS3B01G046800 chr7B 237925765 237926382 617 True 1057 1057 97.573000 1 617 1 chr7B.!!$R1 616
19 TraesCS3B01G046800 chr7B 732179136 732179729 593 True 880 880 93.042000 1 617 1 chr7B.!!$R3 616
20 TraesCS3B01G046800 chr4D 8874495 8875115 620 True 891 891 92.593000 1 619 1 chr4D.!!$R1 618
21 TraesCS3B01G046800 chr7D 528806198 528806812 614 True 845 845 91.545000 1 612 1 chr7D.!!$R1 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
706 710 0.106519 AAGGGGAGGCGAATTCATGG 60.107 55.000 6.22 0.00 0.00 3.66 F
731 735 0.107165 CCGGTGGAGGGAGATTTTCC 60.107 60.000 0.00 0.00 46.00 3.13 F
1276 1314 0.251653 GGTCTTTTCCCCCACCCTTC 60.252 60.000 0.00 0.00 0.00 3.46 F
2023 2114 1.951631 GGAGCGATCCTTAGCGTGC 60.952 63.158 13.71 0.00 36.72 5.34 F
3438 3649 0.679505 TAGAAGCTGCAGGTGAACGT 59.320 50.000 20.97 2.31 0.00 3.99 F
4727 4940 0.106268 TGGCAAGCAGTGGAAGGAAA 60.106 50.000 0.00 0.00 0.00 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2023 2114 0.238289 ATTGTTTCCTGCTTCGCACG 59.762 50.000 0.00 0.0 33.79 5.34 R
2067 2158 2.703416 TGTACCTGAGCAGCTTCATTG 58.297 47.619 0.00 0.0 0.00 2.82 R
2114 2205 4.332268 GCTGTTGCCTGAAATGAAACAAAA 59.668 37.500 0.00 0.0 30.90 2.44 R
3452 3663 2.736192 CAGTGTGCATACAACATCGTCA 59.264 45.455 16.44 0.0 38.82 4.35 R
5086 5299 0.036388 TCAAGATCCTGAACGGTGGC 60.036 55.000 0.00 0.0 0.00 5.01 R
6547 6793 0.109179 CCGGACGTCCACGAATGTTA 60.109 55.000 32.80 0.0 43.02 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 155 7.596248 CACTTTTTGCTGTTGTGCTTATCTATT 59.404 33.333 0.00 0.00 0.00 1.73
434 436 3.067320 GGTAGGGTACTTATCCACGTCAC 59.933 52.174 0.00 0.00 0.00 3.67
622 626 2.802719 ACACGAAATTTGGCCACCTAT 58.197 42.857 3.88 0.00 0.00 2.57
623 627 2.752903 ACACGAAATTTGGCCACCTATC 59.247 45.455 3.88 0.67 0.00 2.08
624 628 3.016736 CACGAAATTTGGCCACCTATCT 58.983 45.455 3.88 0.00 0.00 1.98
625 629 4.196193 CACGAAATTTGGCCACCTATCTA 58.804 43.478 3.88 0.00 0.00 1.98
626 630 4.035208 CACGAAATTTGGCCACCTATCTAC 59.965 45.833 3.88 0.00 0.00 2.59
627 631 4.080526 ACGAAATTTGGCCACCTATCTACT 60.081 41.667 3.88 0.00 0.00 2.57
628 632 5.129815 ACGAAATTTGGCCACCTATCTACTA 59.870 40.000 3.88 0.00 0.00 1.82
629 633 5.696724 CGAAATTTGGCCACCTATCTACTAG 59.303 44.000 3.88 0.00 0.00 2.57
630 634 4.625607 ATTTGGCCACCTATCTACTAGC 57.374 45.455 3.88 0.00 0.00 3.42
631 635 2.011122 TGGCCACCTATCTACTAGCC 57.989 55.000 0.00 0.00 39.41 3.93
632 636 0.889306 GGCCACCTATCTACTAGCCG 59.111 60.000 0.00 0.00 0.00 5.52
633 637 0.889306 GCCACCTATCTACTAGCCGG 59.111 60.000 0.00 0.00 0.00 6.13
634 638 1.547223 GCCACCTATCTACTAGCCGGA 60.547 57.143 5.05 0.00 0.00 5.14
635 639 2.884720 GCCACCTATCTACTAGCCGGAT 60.885 54.545 5.05 0.00 0.00 4.18
636 640 3.018149 CCACCTATCTACTAGCCGGATC 58.982 54.545 5.05 0.00 0.00 3.36
637 641 3.018149 CACCTATCTACTAGCCGGATCC 58.982 54.545 5.05 0.00 0.00 3.36
638 642 2.290464 CCTATCTACTAGCCGGATCCG 58.710 57.143 27.65 27.65 39.44 4.18
639 643 2.093075 CCTATCTACTAGCCGGATCCGA 60.093 54.545 35.42 14.93 42.83 4.55
640 644 2.581216 ATCTACTAGCCGGATCCGAA 57.419 50.000 35.42 18.37 42.83 4.30
641 645 1.893544 TCTACTAGCCGGATCCGAAG 58.106 55.000 35.42 27.44 42.83 3.79
642 646 0.241481 CTACTAGCCGGATCCGAAGC 59.759 60.000 35.42 28.61 42.83 3.86
643 647 0.466739 TACTAGCCGGATCCGAAGCA 60.467 55.000 35.42 16.51 42.83 3.91
644 648 1.300233 CTAGCCGGATCCGAAGCAC 60.300 63.158 35.42 17.68 42.83 4.40
645 649 2.701163 CTAGCCGGATCCGAAGCACC 62.701 65.000 35.42 14.83 42.83 5.01
646 650 4.467084 GCCGGATCCGAAGCACCA 62.467 66.667 35.42 0.00 42.83 4.17
647 651 2.267642 CCGGATCCGAAGCACCAA 59.732 61.111 35.42 0.00 42.83 3.67
648 652 1.376683 CCGGATCCGAAGCACCAAA 60.377 57.895 35.42 0.00 42.83 3.28
649 653 0.958382 CCGGATCCGAAGCACCAAAA 60.958 55.000 35.42 0.00 42.83 2.44
650 654 0.878416 CGGATCCGAAGCACCAAAAA 59.122 50.000 30.62 0.00 42.83 1.94
651 655 1.472480 CGGATCCGAAGCACCAAAAAT 59.528 47.619 30.62 0.00 42.83 1.82
652 656 2.477863 CGGATCCGAAGCACCAAAAATC 60.478 50.000 30.62 0.00 42.83 2.17
653 657 2.159240 GGATCCGAAGCACCAAAAATCC 60.159 50.000 0.00 0.00 0.00 3.01
654 658 1.253100 TCCGAAGCACCAAAAATCCC 58.747 50.000 0.00 0.00 0.00 3.85
655 659 0.246360 CCGAAGCACCAAAAATCCCC 59.754 55.000 0.00 0.00 0.00 4.81
656 660 1.256812 CGAAGCACCAAAAATCCCCT 58.743 50.000 0.00 0.00 0.00 4.79
657 661 1.202348 CGAAGCACCAAAAATCCCCTC 59.798 52.381 0.00 0.00 0.00 4.30
658 662 1.550524 GAAGCACCAAAAATCCCCTCC 59.449 52.381 0.00 0.00 0.00 4.30
659 663 0.252239 AGCACCAAAAATCCCCTCCC 60.252 55.000 0.00 0.00 0.00 4.30
660 664 1.264749 GCACCAAAAATCCCCTCCCC 61.265 60.000 0.00 0.00 0.00 4.81
661 665 0.116143 CACCAAAAATCCCCTCCCCA 59.884 55.000 0.00 0.00 0.00 4.96
662 666 0.116342 ACCAAAAATCCCCTCCCCAC 59.884 55.000 0.00 0.00 0.00 4.61
663 667 0.617535 CCAAAAATCCCCTCCCCACC 60.618 60.000 0.00 0.00 0.00 4.61
664 668 0.116143 CAAAAATCCCCTCCCCACCA 59.884 55.000 0.00 0.00 0.00 4.17
665 669 0.116342 AAAAATCCCCTCCCCACCAC 59.884 55.000 0.00 0.00 0.00 4.16
666 670 1.811025 AAAATCCCCTCCCCACCACC 61.811 60.000 0.00 0.00 0.00 4.61
700 704 4.176752 GGCGAAGGGGAGGCGAAT 62.177 66.667 0.00 0.00 0.00 3.34
701 705 2.124695 GCGAAGGGGAGGCGAATT 60.125 61.111 0.00 0.00 0.00 2.17
702 706 2.180862 GCGAAGGGGAGGCGAATTC 61.181 63.158 0.00 0.00 0.00 2.17
703 707 1.220749 CGAAGGGGAGGCGAATTCA 59.779 57.895 6.22 0.00 0.00 2.57
704 708 0.179045 CGAAGGGGAGGCGAATTCAT 60.179 55.000 6.22 0.00 0.00 2.57
705 709 1.312815 GAAGGGGAGGCGAATTCATG 58.687 55.000 6.22 0.00 0.00 3.07
706 710 0.106519 AAGGGGAGGCGAATTCATGG 60.107 55.000 6.22 0.00 0.00 3.66
707 711 1.529244 GGGGAGGCGAATTCATGGG 60.529 63.158 6.22 0.00 0.00 4.00
708 712 2.196245 GGGAGGCGAATTCATGGGC 61.196 63.158 6.22 1.76 0.00 5.36
709 713 1.152881 GGAGGCGAATTCATGGGCT 60.153 57.895 6.22 6.93 39.50 5.19
710 714 2.325218 GAGGCGAATTCATGGGCTC 58.675 57.895 15.95 15.95 44.43 4.70
711 715 1.502163 GAGGCGAATTCATGGGCTCG 61.502 60.000 15.95 6.76 42.34 5.03
713 717 3.025619 CGAATTCATGGGCTCGCC 58.974 61.111 6.22 0.00 0.00 5.54
714 718 2.885676 CGAATTCATGGGCTCGCCG 61.886 63.158 6.22 0.00 36.85 6.46
715 719 2.516930 AATTCATGGGCTCGCCGG 60.517 61.111 0.00 0.00 36.85 6.13
716 720 3.344137 AATTCATGGGCTCGCCGGT 62.344 57.895 1.90 0.00 36.85 5.28
717 721 4.776322 TTCATGGGCTCGCCGGTG 62.776 66.667 9.28 9.28 36.85 4.94
726 730 4.458829 TCGCCGGTGGAGGGAGAT 62.459 66.667 16.49 0.00 0.00 2.75
727 731 3.470888 CGCCGGTGGAGGGAGATT 61.471 66.667 7.26 0.00 0.00 2.40
728 732 2.998949 GCCGGTGGAGGGAGATTT 59.001 61.111 1.90 0.00 0.00 2.17
729 733 1.303282 GCCGGTGGAGGGAGATTTT 59.697 57.895 1.90 0.00 0.00 1.82
730 734 0.748367 GCCGGTGGAGGGAGATTTTC 60.748 60.000 1.90 0.00 0.00 2.29
731 735 0.107165 CCGGTGGAGGGAGATTTTCC 60.107 60.000 0.00 0.00 46.00 3.13
740 744 2.514458 GGAGATTTTCCCAGGAAGCA 57.486 50.000 0.00 0.00 40.37 3.91
741 745 2.095461 GGAGATTTTCCCAGGAAGCAC 58.905 52.381 0.00 0.00 40.37 4.40
742 746 2.095461 GAGATTTTCCCAGGAAGCACC 58.905 52.381 0.00 0.00 35.38 5.01
743 747 1.428912 AGATTTTCCCAGGAAGCACCA 59.571 47.619 0.00 0.00 42.04 4.17
744 748 2.158325 AGATTTTCCCAGGAAGCACCAA 60.158 45.455 0.00 0.00 42.04 3.67
745 749 2.166907 TTTTCCCAGGAAGCACCAAA 57.833 45.000 0.00 0.00 42.04 3.28
746 750 1.703411 TTTCCCAGGAAGCACCAAAG 58.297 50.000 0.00 0.00 42.04 2.77
747 751 0.555769 TTCCCAGGAAGCACCAAAGT 59.444 50.000 0.00 0.00 42.04 2.66
748 752 0.555769 TCCCAGGAAGCACCAAAGTT 59.444 50.000 2.96 0.00 42.04 2.66
749 753 1.063266 TCCCAGGAAGCACCAAAGTTT 60.063 47.619 2.96 0.00 42.04 2.66
750 754 1.069049 CCCAGGAAGCACCAAAGTTTG 59.931 52.381 8.73 8.73 42.04 2.93
751 755 1.538849 CCAGGAAGCACCAAAGTTTGC 60.539 52.381 10.25 0.00 42.04 3.68
757 761 2.584492 GCACCAAAGTTTGCTTGACT 57.416 45.000 10.25 0.00 35.74 3.41
758 762 2.463876 GCACCAAAGTTTGCTTGACTC 58.536 47.619 10.25 0.00 35.74 3.36
759 763 2.719798 CACCAAAGTTTGCTTGACTCG 58.280 47.619 10.25 0.00 34.71 4.18
760 764 2.354510 CACCAAAGTTTGCTTGACTCGA 59.645 45.455 10.25 0.00 34.71 4.04
761 765 2.354821 ACCAAAGTTTGCTTGACTCGAC 59.645 45.455 10.25 0.00 34.71 4.20
762 766 2.287009 CCAAAGTTTGCTTGACTCGACC 60.287 50.000 10.25 0.00 34.71 4.79
763 767 1.217882 AAGTTTGCTTGACTCGACCG 58.782 50.000 0.00 0.00 32.92 4.79
764 768 0.387929 AGTTTGCTTGACTCGACCGA 59.612 50.000 0.00 0.00 0.00 4.69
765 769 1.202486 AGTTTGCTTGACTCGACCGAA 60.202 47.619 0.00 0.00 0.00 4.30
766 770 1.798813 GTTTGCTTGACTCGACCGAAT 59.201 47.619 0.00 0.00 0.00 3.34
767 771 1.428448 TTGCTTGACTCGACCGAATG 58.572 50.000 0.00 0.00 0.00 2.67
768 772 0.389817 TGCTTGACTCGACCGAATGG 60.390 55.000 0.00 0.00 42.84 3.16
769 773 1.084370 GCTTGACTCGACCGAATGGG 61.084 60.000 0.00 0.00 40.75 4.00
779 783 2.921374 CCGAATGGGTTGAACACGA 58.079 52.632 0.00 0.00 0.00 4.35
780 784 1.448985 CCGAATGGGTTGAACACGAT 58.551 50.000 0.00 0.00 0.00 3.73
781 785 1.810151 CCGAATGGGTTGAACACGATT 59.190 47.619 0.00 0.00 0.00 3.34
782 786 2.414029 CCGAATGGGTTGAACACGATTG 60.414 50.000 0.00 0.00 0.00 2.67
783 787 2.225491 CGAATGGGTTGAACACGATTGT 59.775 45.455 0.00 0.00 37.67 2.71
784 788 3.433957 CGAATGGGTTGAACACGATTGTA 59.566 43.478 0.00 0.00 33.55 2.41
785 789 4.094294 CGAATGGGTTGAACACGATTGTAT 59.906 41.667 0.00 0.00 33.55 2.29
786 790 4.963276 ATGGGTTGAACACGATTGTATG 57.037 40.909 0.00 0.00 33.55 2.39
787 791 4.009370 TGGGTTGAACACGATTGTATGA 57.991 40.909 0.00 0.00 33.55 2.15
788 792 4.390264 TGGGTTGAACACGATTGTATGAA 58.610 39.130 0.00 0.00 33.55 2.57
789 793 5.007034 TGGGTTGAACACGATTGTATGAAT 58.993 37.500 0.00 0.00 33.55 2.57
790 794 6.174049 TGGGTTGAACACGATTGTATGAATA 58.826 36.000 0.00 0.00 33.55 1.75
791 795 6.092944 TGGGTTGAACACGATTGTATGAATAC 59.907 38.462 0.00 0.00 33.55 1.89
792 796 6.315393 GGGTTGAACACGATTGTATGAATACT 59.685 38.462 0.00 0.00 33.55 2.12
793 797 7.148306 GGGTTGAACACGATTGTATGAATACTT 60.148 37.037 0.00 0.00 33.55 2.24
794 798 8.875803 GGTTGAACACGATTGTATGAATACTTA 58.124 33.333 0.00 0.00 33.55 2.24
831 835 8.917415 ACACTGATTCAAAAGAAAAGAAAGAC 57.083 30.769 0.00 0.00 0.00 3.01
832 836 8.743714 ACACTGATTCAAAAGAAAAGAAAGACT 58.256 29.630 0.00 0.00 0.00 3.24
833 837 9.578439 CACTGATTCAAAAGAAAAGAAAGACTT 57.422 29.630 0.00 0.00 40.98 3.01
851 855 9.581099 GAAAGACTTTTCTGTGAAATTTGGTAA 57.419 29.630 1.12 0.00 39.66 2.85
852 856 9.936759 AAAGACTTTTCTGTGAAATTTGGTAAA 57.063 25.926 0.00 0.00 29.98 2.01
853 857 9.586435 AAGACTTTTCTGTGAAATTTGGTAAAG 57.414 29.630 0.00 2.40 29.98 1.85
854 858 8.966868 AGACTTTTCTGTGAAATTTGGTAAAGA 58.033 29.630 0.00 0.00 0.00 2.52
855 859 9.581099 GACTTTTCTGTGAAATTTGGTAAAGAA 57.419 29.630 0.00 0.00 0.00 2.52
856 860 9.936759 ACTTTTCTGTGAAATTTGGTAAAGAAA 57.063 25.926 0.00 2.12 32.25 2.52
902 906 7.834068 ACTGTGCACTACTGTATATTTTCTG 57.166 36.000 19.41 0.00 39.36 3.02
903 907 7.611770 ACTGTGCACTACTGTATATTTTCTGA 58.388 34.615 19.41 0.00 39.36 3.27
904 908 7.761704 ACTGTGCACTACTGTATATTTTCTGAG 59.238 37.037 19.41 2.52 39.36 3.35
905 909 7.611770 TGTGCACTACTGTATATTTTCTGAGT 58.388 34.615 19.41 0.00 0.00 3.41
936 940 1.508632 TTTCTACTTGCGCAGTGACC 58.491 50.000 11.31 0.00 35.97 4.02
996 1001 4.674496 GACTAGTCGACGCAGCTC 57.326 61.111 17.04 11.35 0.00 4.09
1184 1219 0.394899 CACCTGGGCTTTCTGGATCC 60.395 60.000 4.20 4.20 0.00 3.36
1276 1314 0.251653 GGTCTTTTCCCCCACCCTTC 60.252 60.000 0.00 0.00 0.00 3.46
1333 1374 4.764679 TGGTTGCTTGTGAATGATGTAC 57.235 40.909 0.00 0.00 0.00 2.90
1338 1379 3.622612 TGCTTGTGAATGATGTACGATGG 59.377 43.478 0.00 0.00 0.00 3.51
1429 1477 4.705507 TGCTCGAGTCTAGGACTAAAATGT 59.294 41.667 15.13 0.00 43.53 2.71
1490 1538 4.240096 GCAAACAGGGATTTGTGAGAATG 58.760 43.478 0.68 0.00 40.92 2.67
1574 1637 9.973450 GATAATATCTGTCATTACTCACACAGT 57.027 33.333 0.00 0.00 37.97 3.55
1575 1638 9.973450 ATAATATCTGTCATTACTCACACAGTC 57.027 33.333 0.00 0.00 37.97 3.51
1576 1639 5.728637 ATCTGTCATTACTCACACAGTCA 57.271 39.130 0.00 0.00 37.97 3.41
1577 1640 4.871513 TCTGTCATTACTCACACAGTCAC 58.128 43.478 0.00 0.00 37.97 3.67
1578 1641 4.340950 TCTGTCATTACTCACACAGTCACA 59.659 41.667 0.00 0.00 37.97 3.58
1633 1696 5.757886 TCAGAAAATCGGTGATGTTTGTTC 58.242 37.500 0.00 0.00 0.00 3.18
1634 1697 4.612614 CAGAAAATCGGTGATGTTTGTTCG 59.387 41.667 0.00 0.00 0.00 3.95
1891 1982 3.372206 ACAGTAAGCATCTTTCGCATCAC 59.628 43.478 0.00 0.00 0.00 3.06
1933 2024 7.944554 TCTTTTTCTGTAAATCCATCCTGACTT 59.055 33.333 0.00 0.00 0.00 3.01
1940 2031 5.990120 AAATCCATCCTGACTTCTTTTGG 57.010 39.130 0.00 0.00 0.00 3.28
1976 2067 4.508551 AGATACTGGCATTGATTGGTGA 57.491 40.909 0.00 0.00 0.00 4.02
1977 2068 4.458397 AGATACTGGCATTGATTGGTGAG 58.542 43.478 0.00 0.00 0.00 3.51
1991 2082 5.821995 TGATTGGTGAGCAATTCGAATATGA 59.178 36.000 11.83 0.00 0.00 2.15
2011 2102 6.698008 ATGATAATGAAATTTGTGGAGCGA 57.302 33.333 0.00 0.00 37.87 4.93
2023 2114 1.951631 GGAGCGATCCTTAGCGTGC 60.952 63.158 13.71 0.00 36.72 5.34
2027 2118 2.860628 CGATCCTTAGCGTGCGTGC 61.861 63.158 0.00 0.00 0.00 5.34
2099 2190 6.009908 TGCTCAGGTACAAGTCCTATAGTA 57.990 41.667 0.00 0.00 33.54 1.82
2109 2200 7.976135 ACAAGTCCTATAGTACATACTACGG 57.024 40.000 0.84 5.65 41.18 4.02
2111 2202 8.381636 ACAAGTCCTATAGTACATACTACGGAT 58.618 37.037 16.21 5.18 40.62 4.18
2114 2205 9.804977 AGTCCTATAGTACATACTACGGATTTT 57.195 33.333 16.21 7.78 40.62 1.82
2161 2252 6.296803 CCATGTGGCATGCTATATCATAGAT 58.703 40.000 18.92 0.00 0.00 1.98
2162 2253 6.427242 CCATGTGGCATGCTATATCATAGATC 59.573 42.308 18.92 0.00 0.00 2.75
2189 2280 5.721232 AGTTTGTCAAATACTACTCCCTCG 58.279 41.667 0.40 0.00 0.00 4.63
2365 2569 6.583806 GCCAAATGTCATTCTGTAACTTGAAG 59.416 38.462 0.00 0.00 0.00 3.02
2421 2625 8.739972 ACGCAATTGAAGAAACTTATATTCCTT 58.260 29.630 10.34 0.00 0.00 3.36
2595 2801 1.972075 TGTCGTCCTGTATGGTTGGAA 59.028 47.619 0.00 0.00 37.07 3.53
2596 2802 2.569853 TGTCGTCCTGTATGGTTGGAAT 59.430 45.455 0.00 0.00 37.07 3.01
2939 3146 0.949105 AACTCCACCGACGCATTGAC 60.949 55.000 0.00 0.00 0.00 3.18
3205 3413 1.598130 GTCCGGACTATGGCATGGC 60.598 63.158 27.64 13.29 0.00 4.40
3230 3438 2.807895 GGCGCGCGAACTAGACAA 60.808 61.111 37.18 0.00 0.00 3.18
3240 3448 3.673866 GCGAACTAGACAAAGAGGTCCTC 60.674 52.174 11.31 11.31 38.59 3.71
3438 3649 0.679505 TAGAAGCTGCAGGTGAACGT 59.320 50.000 20.97 2.31 0.00 3.99
3452 3663 3.502920 GTGAACGTGTCATCGAAGAGAT 58.497 45.455 0.00 0.00 43.63 2.75
3871 4083 8.041323 TGTGTAAGCATTTGGTTTTCCTTTTTA 58.959 29.630 0.00 0.00 41.38 1.52
3908 4121 4.494350 AGTTCTTACAATTGTGCTGCAG 57.506 40.909 21.42 10.11 0.00 4.41
4287 4500 0.320683 GCCCAAATCCTTTGTGTGCC 60.321 55.000 0.00 0.00 38.98 5.01
4288 4501 0.321346 CCCAAATCCTTTGTGTGCCC 59.679 55.000 0.00 0.00 38.98 5.36
4325 4538 6.931840 TGTAGCAATTGTACAGTACACAATGA 59.068 34.615 13.26 0.00 43.94 2.57
4365 4578 1.759881 CTGGATCTGCCCCTGGATC 59.240 63.158 0.00 0.00 38.01 3.36
4477 4690 6.226052 TGCACCTATTCATTAGCACTATCAG 58.774 40.000 0.00 0.00 0.00 2.90
4527 4740 3.540314 AGCAATCATCAGAGGTCAGTC 57.460 47.619 0.00 0.00 0.00 3.51
4528 4741 2.170187 AGCAATCATCAGAGGTCAGTCC 59.830 50.000 0.00 0.00 0.00 3.85
4727 4940 0.106268 TGGCAAGCAGTGGAAGGAAA 60.106 50.000 0.00 0.00 0.00 3.13
4732 4945 3.006217 GCAAGCAGTGGAAGGAAATTCTT 59.994 43.478 0.00 0.00 38.07 2.52
4930 5143 1.228367 CCCTGCACTGCCTGAACTT 60.228 57.895 0.00 0.00 0.00 2.66
4978 5191 2.243957 TGACACAACGAAGCGCCTG 61.244 57.895 2.29 0.00 0.00 4.85
5080 5293 0.609662 GTGGCTGGGTTGCATCATTT 59.390 50.000 0.00 0.00 34.04 2.32
5086 5299 1.271934 TGGGTTGCATCATTTGAACCG 59.728 47.619 0.00 0.00 36.85 4.44
5152 5365 2.171840 CTCTCCGAGAAACAGAAGGGA 58.828 52.381 0.00 0.00 0.00 4.20
5283 5496 2.360475 GCTCTGCAGGGTTGGGTC 60.360 66.667 16.66 0.00 0.00 4.46
5312 5525 0.107831 TGGGTGGACGACAAAAGGAG 59.892 55.000 0.00 0.00 0.00 3.69
5360 5573 1.003262 CATCGCCTTTTGCAACGGTG 61.003 55.000 17.35 17.35 41.33 4.94
5371 5584 1.432270 GCAACGGTGAGCTCTATGGC 61.432 60.000 16.19 7.52 0.00 4.40
5380 5593 0.684479 AGCTCTATGGCCTCACACGA 60.684 55.000 3.32 0.00 0.00 4.35
5413 5626 2.290641 ACTTGTCAAGTTTGTGATCGGC 59.709 45.455 12.62 0.00 39.04 5.54
5415 5628 0.865769 GTCAAGTTTGTGATCGGCGT 59.134 50.000 6.85 0.00 0.00 5.68
5419 5632 0.865769 AGTTTGTGATCGGCGTTGAC 59.134 50.000 6.85 3.24 0.00 3.18
5449 5662 4.742201 CCTCTGGTCACGGCCGTG 62.742 72.222 45.04 45.04 46.64 4.94
5587 5800 1.415672 GGTCACCCAACCTCAGACCA 61.416 60.000 0.00 0.00 46.15 4.02
5657 5870 1.446445 CATGGCGCACACAAATGGG 60.446 57.895 10.83 0.00 35.70 4.00
5842 6055 2.508526 GTGTTCCTGACAAGCTCCAAT 58.491 47.619 0.00 0.00 40.65 3.16
5914 6127 1.668151 GGGCGGCGTTCATAGGATC 60.668 63.158 9.37 0.00 0.00 3.36
5957 6170 1.487137 GGGGTAGCCCTAATCCTCCAT 60.487 57.143 23.31 0.00 44.66 3.41
5973 6186 1.383799 CATTGTGGCTTCTCCCCCA 59.616 57.895 0.00 0.00 0.00 4.96
5981 6194 0.821301 GCTTCTCCCCCAAGCATAGC 60.821 60.000 0.00 0.00 44.87 2.97
5983 6196 1.271840 TTCTCCCCCAAGCATAGCGT 61.272 55.000 0.00 0.00 0.00 5.07
5985 6198 0.394352 CTCCCCCAAGCATAGCGTTT 60.394 55.000 0.00 0.00 0.00 3.60
6117 6346 9.358872 GCAATTATAATCGATCTGTACTCATGA 57.641 33.333 0.00 0.00 0.00 3.07
6191 6420 1.523154 TTGAGTTGAATGCCGGTGCC 61.523 55.000 1.90 0.00 36.33 5.01
6203 6432 1.524621 CGGTGCCTGGGAATAGCTG 60.525 63.158 0.00 0.00 0.00 4.24
6241 6470 9.880064 CTCAAATGAACAAGCTGAGATAATATG 57.120 33.333 0.00 0.00 36.44 1.78
6337 6576 1.338105 TGCCTGAGTGATCAAACTCCG 60.338 52.381 10.04 4.79 45.03 4.63
6346 6585 4.960469 AGTGATCAAACTCCGGTCCTATAA 59.040 41.667 0.00 0.00 0.00 0.98
6364 6603 8.178313 GTCCTATAATTTTCTTGACAGCAGTTC 58.822 37.037 0.00 0.00 0.00 3.01
6365 6604 8.103305 TCCTATAATTTTCTTGACAGCAGTTCT 58.897 33.333 0.00 0.00 0.00 3.01
6370 6609 2.851195 TCTTGACAGCAGTTCTTTCCC 58.149 47.619 0.00 0.00 0.00 3.97
6384 6623 1.276138 CTTTCCCCTTGAAACATGGGC 59.724 52.381 14.65 0.00 44.51 5.36
6417 6662 7.943079 TGCCTCATTTCATTGAATAAGAAGA 57.057 32.000 0.00 0.00 0.00 2.87
6459 6705 1.227674 GCTCCCGGGTGCATTAGAG 60.228 63.158 36.48 18.68 35.06 2.43
6464 6710 2.241176 TCCCGGGTGCATTAGAGAAAAT 59.759 45.455 22.86 0.00 0.00 1.82
6470 6716 5.066593 GGGTGCATTAGAGAAAATAGGGAG 58.933 45.833 0.00 0.00 0.00 4.30
6473 6719 6.828785 GGTGCATTAGAGAAAATAGGGAGAAA 59.171 38.462 0.00 0.00 0.00 2.52
6474 6720 7.339466 GGTGCATTAGAGAAAATAGGGAGAAAA 59.661 37.037 0.00 0.00 0.00 2.29
6475 6721 8.907885 GTGCATTAGAGAAAATAGGGAGAAAAT 58.092 33.333 0.00 0.00 0.00 1.82
6476 6722 9.125026 TGCATTAGAGAAAATAGGGAGAAAATC 57.875 33.333 0.00 0.00 0.00 2.17
6547 6793 7.660112 TCAACATGCAAAGTTTAGTGATGAAT 58.340 30.769 5.27 0.00 0.00 2.57
6564 6810 3.255725 TGAATAACATTCGTGGACGTCC 58.744 45.455 28.17 28.17 40.80 4.79
6595 6841 5.192927 AGATCGATGTCCCAAAATGCTTTA 58.807 37.500 0.54 0.00 0.00 1.85
6658 6904 4.750598 GCCTAGACCTCCACGAATATTTTC 59.249 45.833 0.00 0.00 0.00 2.29
6661 6907 7.048512 CCTAGACCTCCACGAATATTTTCTTT 58.951 38.462 0.00 0.00 0.00 2.52
6662 6908 6.986904 AGACCTCCACGAATATTTTCTTTC 57.013 37.500 0.00 0.00 0.00 2.62
6683 6929 4.350346 TCAGCACGAGAATTTGTTTGTTG 58.650 39.130 0.00 0.00 0.00 3.33
6693 6939 8.265998 CGAGAATTTGTTTGTTGGTAAAACATC 58.734 33.333 2.86 0.00 44.57 3.06
6799 7056 3.008049 ACCCAGTACAGAAACTCCATGTC 59.992 47.826 0.00 0.00 0.00 3.06
6800 7057 3.261897 CCCAGTACAGAAACTCCATGTCT 59.738 47.826 0.00 0.00 0.00 3.41
6815 7072 7.450074 ACTCCATGTCTGTTAATGAAGTACAA 58.550 34.615 0.00 0.00 0.00 2.41
6820 7077 7.709269 TGTCTGTTAATGAAGTACAACACTC 57.291 36.000 0.00 0.00 36.04 3.51
6837 7094 0.526524 CTCGAATGAGGGCTCGACAC 60.527 60.000 0.00 0.00 39.07 3.67
6862 7119 0.032515 TGGAGGGGATTACTCTCGCA 60.033 55.000 0.00 0.00 35.34 5.10
6866 7123 0.394565 GGGGATTACTCTCGCAGCAT 59.605 55.000 0.00 0.00 0.00 3.79
6868 7125 1.069204 GGGATTACTCTCGCAGCATGA 59.931 52.381 0.00 0.00 39.69 3.07
6872 7129 2.613739 TACTCTCGCAGCATGACCGC 62.614 60.000 0.00 0.00 39.69 5.68
6894 7151 3.249189 AAGTGCTTCGCCCCCAGA 61.249 61.111 0.00 0.00 0.00 3.86
6905 7163 3.691342 CCCCAGAACACGCCTCGA 61.691 66.667 0.00 0.00 0.00 4.04
6911 7169 0.600255 AGAACACGCCTCGAACTTGG 60.600 55.000 0.00 0.00 0.00 3.61
6970 7228 0.893727 GGAACACCCGTGCATTCCTT 60.894 55.000 7.17 0.00 38.08 3.36
6971 7229 0.521735 GAACACCCGTGCATTCCTTC 59.478 55.000 0.00 0.00 0.00 3.46
6973 7231 1.303236 CACCCGTGCATTCCTTCCA 60.303 57.895 0.00 0.00 0.00 3.53
6998 7256 1.523758 ATTTCCCAAGACGTGAGCAC 58.476 50.000 0.00 0.00 0.00 4.40
7014 7272 1.379044 CACCATGAGGGAGGCCAAC 60.379 63.158 5.01 0.00 41.15 3.77
7026 7284 4.388499 GCCAACGCCTTCCTCCGA 62.388 66.667 0.00 0.00 0.00 4.55
7054 7312 5.331902 CATTGACATGGATTACAACGAACC 58.668 41.667 0.00 0.00 0.00 3.62
7055 7313 4.009370 TGACATGGATTACAACGAACCA 57.991 40.909 0.00 0.00 35.09 3.67
7056 7314 3.749088 TGACATGGATTACAACGAACCAC 59.251 43.478 0.00 0.00 33.38 4.16
7068 7326 1.684450 ACGAACCACCCACCAATTTTC 59.316 47.619 0.00 0.00 0.00 2.29
7069 7327 1.000394 CGAACCACCCACCAATTTTCC 60.000 52.381 0.00 0.00 0.00 3.13
7083 7341 7.119553 CCACCAATTTTCCCATTATGAAAGTTG 59.880 37.037 11.64 11.64 43.41 3.16
7095 7353 4.939509 ATGAAAGTTGGGTTAATCGACG 57.060 40.909 0.00 0.00 0.00 5.12
7096 7354 3.992643 TGAAAGTTGGGTTAATCGACGA 58.007 40.909 0.00 0.00 0.00 4.20
7118 7376 3.251484 AGGAGAGATTGTGGAGACCAAA 58.749 45.455 0.00 0.00 34.18 3.28
7127 7385 2.711009 TGTGGAGACCAAACCAATCTCT 59.289 45.455 0.00 0.00 39.12 3.10
7137 7403 4.096984 CCAAACCAATCTCTTAGCATGGTC 59.903 45.833 0.00 0.00 43.34 4.02
7138 7404 3.567478 ACCAATCTCTTAGCATGGTCC 57.433 47.619 0.00 0.00 40.23 4.46
7139 7405 2.846206 ACCAATCTCTTAGCATGGTCCA 59.154 45.455 0.00 0.00 40.23 4.02
7140 7406 3.266772 ACCAATCTCTTAGCATGGTCCAA 59.733 43.478 0.00 0.00 40.23 3.53
7141 7407 4.263905 ACCAATCTCTTAGCATGGTCCAAA 60.264 41.667 0.00 0.00 40.23 3.28
7142 7408 4.096984 CCAATCTCTTAGCATGGTCCAAAC 59.903 45.833 0.00 0.00 0.00 2.93
7143 7409 2.972625 TCTCTTAGCATGGTCCAAACG 58.027 47.619 0.00 0.00 0.00 3.60
7144 7410 2.301870 TCTCTTAGCATGGTCCAAACGT 59.698 45.455 0.00 0.00 0.00 3.99
7154 7420 1.453155 GTCCAAACGTGCATGGAGAT 58.547 50.000 15.90 0.00 46.01 2.75
7181 7447 2.350388 CGTGGAACATAAGGTGTGCAAC 60.350 50.000 0.00 0.00 44.52 4.17
7200 7466 1.633945 ACAGTTTCCGGGGCTCTATTT 59.366 47.619 0.00 0.00 0.00 1.40
7208 7474 1.943340 CGGGGCTCTATTTCAAAGCTC 59.057 52.381 0.00 0.00 35.72 4.09
7214 7481 5.123344 GGGCTCTATTTCAAAGCTCGTAAAA 59.877 40.000 0.00 0.00 36.29 1.52
7225 7492 1.144969 CTCGTAAAAGCTGCGGTTCA 58.855 50.000 0.00 0.00 33.40 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
288 290 4.832608 GCCCTGGCGGTAGGTTCG 62.833 72.222 0.00 0.00 36.02 3.95
588 592 4.912528 TTTCGTGTTTTGACCTTTTTGC 57.087 36.364 0.00 0.00 0.00 3.68
594 598 3.453424 GCCAAATTTCGTGTTTTGACCT 58.547 40.909 7.82 0.00 35.34 3.85
622 626 1.893544 CTTCGGATCCGGCTAGTAGA 58.106 55.000 32.79 9.16 40.25 2.59
623 627 0.241481 GCTTCGGATCCGGCTAGTAG 59.759 60.000 32.79 19.63 40.25 2.57
624 628 0.466739 TGCTTCGGATCCGGCTAGTA 60.467 55.000 32.79 22.40 40.25 1.82
625 629 1.756950 TGCTTCGGATCCGGCTAGT 60.757 57.895 32.79 0.00 40.25 2.57
626 630 1.300233 GTGCTTCGGATCCGGCTAG 60.300 63.158 32.79 25.57 40.25 3.42
627 631 2.792947 GGTGCTTCGGATCCGGCTA 61.793 63.158 32.79 17.62 40.25 3.93
628 632 4.162690 GGTGCTTCGGATCCGGCT 62.163 66.667 32.79 0.00 40.25 5.52
629 633 3.969250 TTGGTGCTTCGGATCCGGC 62.969 63.158 32.79 27.75 40.25 6.13
630 634 0.958382 TTTTGGTGCTTCGGATCCGG 60.958 55.000 32.79 19.33 40.25 5.14
631 635 0.878416 TTTTTGGTGCTTCGGATCCG 59.122 50.000 28.62 28.62 41.35 4.18
632 636 2.159240 GGATTTTTGGTGCTTCGGATCC 60.159 50.000 0.00 0.00 0.00 3.36
633 637 2.159240 GGGATTTTTGGTGCTTCGGATC 60.159 50.000 0.00 0.00 0.00 3.36
634 638 1.824852 GGGATTTTTGGTGCTTCGGAT 59.175 47.619 0.00 0.00 0.00 4.18
635 639 1.253100 GGGATTTTTGGTGCTTCGGA 58.747 50.000 0.00 0.00 0.00 4.55
636 640 0.246360 GGGGATTTTTGGTGCTTCGG 59.754 55.000 0.00 0.00 0.00 4.30
637 641 1.202348 GAGGGGATTTTTGGTGCTTCG 59.798 52.381 0.00 0.00 0.00 3.79
638 642 1.550524 GGAGGGGATTTTTGGTGCTTC 59.449 52.381 0.00 0.00 0.00 3.86
639 643 1.644509 GGAGGGGATTTTTGGTGCTT 58.355 50.000 0.00 0.00 0.00 3.91
640 644 0.252239 GGGAGGGGATTTTTGGTGCT 60.252 55.000 0.00 0.00 0.00 4.40
641 645 1.264749 GGGGAGGGGATTTTTGGTGC 61.265 60.000 0.00 0.00 0.00 5.01
642 646 0.116143 TGGGGAGGGGATTTTTGGTG 59.884 55.000 0.00 0.00 0.00 4.17
643 647 0.116342 GTGGGGAGGGGATTTTTGGT 59.884 55.000 0.00 0.00 0.00 3.67
644 648 0.617535 GGTGGGGAGGGGATTTTTGG 60.618 60.000 0.00 0.00 0.00 3.28
645 649 0.116143 TGGTGGGGAGGGGATTTTTG 59.884 55.000 0.00 0.00 0.00 2.44
646 650 0.116342 GTGGTGGGGAGGGGATTTTT 59.884 55.000 0.00 0.00 0.00 1.94
647 651 1.781001 GTGGTGGGGAGGGGATTTT 59.219 57.895 0.00 0.00 0.00 1.82
648 652 2.246126 GGTGGTGGGGAGGGGATTT 61.246 63.158 0.00 0.00 0.00 2.17
649 653 2.617215 GGTGGTGGGGAGGGGATT 60.617 66.667 0.00 0.00 0.00 3.01
683 687 3.699134 AATTCGCCTCCCCTTCGCC 62.699 63.158 0.00 0.00 0.00 5.54
684 688 2.124695 AATTCGCCTCCCCTTCGC 60.125 61.111 0.00 0.00 0.00 4.70
685 689 0.179045 ATGAATTCGCCTCCCCTTCG 60.179 55.000 0.04 0.00 0.00 3.79
686 690 1.312815 CATGAATTCGCCTCCCCTTC 58.687 55.000 0.04 0.00 0.00 3.46
687 691 0.106519 CCATGAATTCGCCTCCCCTT 60.107 55.000 0.04 0.00 0.00 3.95
688 692 1.533711 CCATGAATTCGCCTCCCCT 59.466 57.895 0.04 0.00 0.00 4.79
689 693 1.529244 CCCATGAATTCGCCTCCCC 60.529 63.158 0.04 0.00 0.00 4.81
690 694 2.196245 GCCCATGAATTCGCCTCCC 61.196 63.158 0.04 0.00 0.00 4.30
691 695 1.152881 AGCCCATGAATTCGCCTCC 60.153 57.895 0.04 0.00 0.00 4.30
692 696 1.502163 CGAGCCCATGAATTCGCCTC 61.502 60.000 0.04 1.56 0.00 4.70
693 697 1.524621 CGAGCCCATGAATTCGCCT 60.525 57.895 0.04 0.00 0.00 5.52
694 698 3.025619 CGAGCCCATGAATTCGCC 58.974 61.111 0.04 0.00 0.00 5.54
696 700 2.885676 CGGCGAGCCCATGAATTCG 61.886 63.158 0.00 1.13 36.23 3.34
697 701 2.546494 CCGGCGAGCCCATGAATTC 61.546 63.158 9.30 0.00 0.00 2.17
698 702 2.516930 CCGGCGAGCCCATGAATT 60.517 61.111 9.30 0.00 0.00 2.17
699 703 3.797353 ACCGGCGAGCCCATGAAT 61.797 61.111 9.30 0.00 0.00 2.57
700 704 4.776322 CACCGGCGAGCCCATGAA 62.776 66.667 9.30 0.00 0.00 2.57
709 713 3.976490 AATCTCCCTCCACCGGCGA 62.976 63.158 9.30 0.00 0.00 5.54
710 714 2.536997 AAAATCTCCCTCCACCGGCG 62.537 60.000 0.00 0.00 0.00 6.46
711 715 0.748367 GAAAATCTCCCTCCACCGGC 60.748 60.000 0.00 0.00 0.00 6.13
712 716 0.107165 GGAAAATCTCCCTCCACCGG 60.107 60.000 0.00 0.00 38.44 5.28
713 717 3.478540 GGAAAATCTCCCTCCACCG 57.521 57.895 0.00 0.00 38.44 4.94
721 725 2.095461 GTGCTTCCTGGGAAAATCTCC 58.905 52.381 3.55 0.00 44.54 3.71
722 726 2.095461 GGTGCTTCCTGGGAAAATCTC 58.905 52.381 3.55 0.00 33.34 2.75
723 727 1.428912 TGGTGCTTCCTGGGAAAATCT 59.571 47.619 3.55 0.00 37.07 2.40
724 728 1.923356 TGGTGCTTCCTGGGAAAATC 58.077 50.000 3.55 0.00 37.07 2.17
725 729 2.397044 TTGGTGCTTCCTGGGAAAAT 57.603 45.000 3.55 0.00 37.07 1.82
726 730 2.038659 CTTTGGTGCTTCCTGGGAAAA 58.961 47.619 3.55 0.00 37.07 2.29
727 731 1.063266 ACTTTGGTGCTTCCTGGGAAA 60.063 47.619 3.55 0.00 37.07 3.13
728 732 0.555769 ACTTTGGTGCTTCCTGGGAA 59.444 50.000 1.90 1.90 37.07 3.97
729 733 0.555769 AACTTTGGTGCTTCCTGGGA 59.444 50.000 0.00 0.00 37.07 4.37
730 734 1.069049 CAAACTTTGGTGCTTCCTGGG 59.931 52.381 0.00 0.00 37.07 4.45
731 735 1.538849 GCAAACTTTGGTGCTTCCTGG 60.539 52.381 3.69 0.00 37.78 4.45
732 736 1.856802 GCAAACTTTGGTGCTTCCTG 58.143 50.000 3.69 0.00 37.78 3.86
738 742 2.463876 GAGTCAAGCAAACTTTGGTGC 58.536 47.619 6.97 2.01 41.89 5.01
739 743 2.354510 TCGAGTCAAGCAAACTTTGGTG 59.645 45.455 6.97 2.74 41.89 4.17
740 744 2.354821 GTCGAGTCAAGCAAACTTTGGT 59.645 45.455 0.16 0.16 44.43 3.67
741 745 2.287009 GGTCGAGTCAAGCAAACTTTGG 60.287 50.000 3.69 0.00 32.29 3.28
742 746 2.599848 CGGTCGAGTCAAGCAAACTTTG 60.600 50.000 0.00 0.00 32.29 2.77
743 747 1.597663 CGGTCGAGTCAAGCAAACTTT 59.402 47.619 0.00 0.00 32.29 2.66
744 748 1.202486 TCGGTCGAGTCAAGCAAACTT 60.202 47.619 0.00 0.00 36.19 2.66
745 749 0.387929 TCGGTCGAGTCAAGCAAACT 59.612 50.000 0.00 0.00 0.00 2.66
746 750 1.214367 TTCGGTCGAGTCAAGCAAAC 58.786 50.000 0.00 0.00 0.00 2.93
747 751 1.798223 CATTCGGTCGAGTCAAGCAAA 59.202 47.619 0.00 0.00 0.00 3.68
748 752 1.428448 CATTCGGTCGAGTCAAGCAA 58.572 50.000 0.00 0.00 0.00 3.91
749 753 0.389817 CCATTCGGTCGAGTCAAGCA 60.390 55.000 0.00 0.00 0.00 3.91
750 754 1.084370 CCCATTCGGTCGAGTCAAGC 61.084 60.000 0.00 0.00 0.00 4.01
751 755 0.246635 ACCCATTCGGTCGAGTCAAG 59.753 55.000 0.00 0.00 43.58 3.02
752 756 2.358039 ACCCATTCGGTCGAGTCAA 58.642 52.632 0.00 0.00 43.58 3.18
753 757 4.107029 ACCCATTCGGTCGAGTCA 57.893 55.556 0.00 0.00 43.58 3.41
760 764 7.987770 TACAATCGTGTTCAACCCATTCGGT 62.988 44.000 0.00 0.00 42.68 4.69
761 765 1.448985 ATCGTGTTCAACCCATTCGG 58.551 50.000 0.00 0.00 37.81 4.30
762 766 2.225491 ACAATCGTGTTCAACCCATTCG 59.775 45.455 0.00 0.00 32.58 3.34
763 767 3.915437 ACAATCGTGTTCAACCCATTC 57.085 42.857 0.00 0.00 32.58 2.67
764 768 5.007034 TCATACAATCGTGTTCAACCCATT 58.993 37.500 0.00 0.00 39.30 3.16
765 769 4.584874 TCATACAATCGTGTTCAACCCAT 58.415 39.130 0.00 0.00 39.30 4.00
766 770 4.009370 TCATACAATCGTGTTCAACCCA 57.991 40.909 0.00 0.00 39.30 4.51
767 771 5.560966 ATTCATACAATCGTGTTCAACCC 57.439 39.130 0.00 0.00 39.30 4.11
768 772 7.303634 AGTATTCATACAATCGTGTTCAACC 57.696 36.000 0.00 0.00 39.30 3.77
806 810 8.743714 AGTCTTTCTTTTCTTTTGAATCAGTGT 58.256 29.630 0.00 0.00 38.37 3.55
807 811 9.578439 AAGTCTTTCTTTTCTTTTGAATCAGTG 57.422 29.630 0.00 0.00 38.37 3.66
825 829 9.581099 TTACCAAATTTCACAGAAAAGTCTTTC 57.419 29.630 0.00 0.00 41.19 2.62
826 830 9.936759 TTTACCAAATTTCACAGAAAAGTCTTT 57.063 25.926 0.00 0.00 28.78 2.52
827 831 9.586435 CTTTACCAAATTTCACAGAAAAGTCTT 57.414 29.630 0.00 0.00 28.78 3.01
828 832 8.966868 TCTTTACCAAATTTCACAGAAAAGTCT 58.033 29.630 0.00 0.00 32.85 3.24
829 833 9.581099 TTCTTTACCAAATTTCACAGAAAAGTC 57.419 29.630 0.00 0.00 0.00 3.01
830 834 9.936759 TTTCTTTACCAAATTTCACAGAAAAGT 57.063 25.926 0.00 0.00 0.00 2.66
876 880 9.534565 CAGAAAATATACAGTAGTGCACAGTAT 57.465 33.333 21.04 20.58 41.31 2.12
877 881 8.745590 TCAGAAAATATACAGTAGTGCACAGTA 58.254 33.333 21.04 15.50 34.09 2.74
878 882 7.611770 TCAGAAAATATACAGTAGTGCACAGT 58.388 34.615 21.04 13.81 0.00 3.55
879 883 7.761704 ACTCAGAAAATATACAGTAGTGCACAG 59.238 37.037 21.04 8.30 0.00 3.66
880 884 7.611770 ACTCAGAAAATATACAGTAGTGCACA 58.388 34.615 21.04 1.84 0.00 4.57
881 885 8.480643 AACTCAGAAAATATACAGTAGTGCAC 57.519 34.615 9.40 9.40 0.00 4.57
901 905 8.883731 GCAAGTAGAAATGCTTATCTAAACTCA 58.116 33.333 0.00 0.00 39.46 3.41
902 906 8.058915 CGCAAGTAGAAATGCTTATCTAAACTC 58.941 37.037 0.00 0.00 40.39 3.01
903 907 7.466050 GCGCAAGTAGAAATGCTTATCTAAACT 60.466 37.037 0.30 0.00 40.39 2.66
904 908 6.629252 GCGCAAGTAGAAATGCTTATCTAAAC 59.371 38.462 0.30 0.00 40.39 2.01
905 909 6.315144 TGCGCAAGTAGAAATGCTTATCTAAA 59.685 34.615 8.16 0.00 40.39 1.85
964 969 2.332362 TAGTCGCCGAATGGACGAGC 62.332 60.000 0.00 0.00 41.92 5.03
1078 1107 0.600518 TCTCTATCTCCTCCGCGTCG 60.601 60.000 4.92 0.00 0.00 5.12
1079 1108 1.533731 CTTCTCTATCTCCTCCGCGTC 59.466 57.143 4.92 0.00 0.00 5.19
1093 1122 1.691196 CTGCGATCTCTCCCTTCTCT 58.309 55.000 0.00 0.00 0.00 3.10
1215 1250 0.106149 GAAGGTGTGGACGGTGTTCT 59.894 55.000 0.00 0.00 0.00 3.01
1276 1314 3.330720 AGGGTTTGGGAGGAGGCG 61.331 66.667 0.00 0.00 0.00 5.52
1333 1374 9.817365 CATCTAAATCTAAATTTACAGCCATCG 57.183 33.333 0.00 0.00 36.49 3.84
1338 1379 8.078596 CAGGGCATCTAAATCTAAATTTACAGC 58.921 37.037 0.00 0.00 36.49 4.40
1429 1477 4.503296 GGTCACAAAACTAGAGCCAGAGAA 60.503 45.833 0.00 0.00 0.00 2.87
1480 1528 6.054941 TCAGTTCAGCTTAACATTCTCACAA 58.945 36.000 13.07 0.00 0.00 3.33
1482 1530 5.698545 ACTCAGTTCAGCTTAACATTCTCAC 59.301 40.000 13.07 0.00 0.00 3.51
1486 1534 6.647067 ACACTACTCAGTTCAGCTTAACATTC 59.353 38.462 13.07 0.00 30.46 2.67
1490 1538 9.804758 AATATACACTACTCAGTTCAGCTTAAC 57.195 33.333 2.40 2.40 30.46 2.01
1571 1634 5.277974 CCCTGAAACAAATGTAGTGTGACTG 60.278 44.000 0.00 0.00 0.00 3.51
1572 1635 4.821805 CCCTGAAACAAATGTAGTGTGACT 59.178 41.667 0.00 0.00 0.00 3.41
1574 1637 4.787551 ACCCTGAAACAAATGTAGTGTGA 58.212 39.130 0.00 0.00 0.00 3.58
1575 1638 6.627395 TTACCCTGAAACAAATGTAGTGTG 57.373 37.500 0.00 0.00 0.00 3.82
1576 1639 7.648039 TTTTACCCTGAAACAAATGTAGTGT 57.352 32.000 0.00 0.00 0.00 3.55
1617 1680 2.073816 GACCGAACAAACATCACCGAT 58.926 47.619 0.00 0.00 0.00 4.18
1618 1681 1.069513 AGACCGAACAAACATCACCGA 59.930 47.619 0.00 0.00 0.00 4.69
1619 1682 1.508632 AGACCGAACAAACATCACCG 58.491 50.000 0.00 0.00 0.00 4.94
1623 1686 5.668558 ACAGTAAAGACCGAACAAACATC 57.331 39.130 0.00 0.00 0.00 3.06
1633 1696 5.243207 AGGTGGAAAATACAGTAAAGACCG 58.757 41.667 0.00 0.00 0.00 4.79
1634 1697 7.520451 AAAGGTGGAAAATACAGTAAAGACC 57.480 36.000 0.00 0.00 0.00 3.85
1850 1941 2.224992 TGTATCCAACCACAATGGCTGT 60.225 45.455 0.00 0.00 42.67 4.40
1891 1982 7.275560 ACAGAAAAAGAAATTGTCCAAAACGAG 59.724 33.333 0.00 0.00 0.00 4.18
1940 2031 7.874940 TGCCAGTATCTAAACATGATATTTGC 58.125 34.615 0.00 0.00 30.79 3.68
1991 2082 5.829924 AGGATCGCTCCACAAATTTCATTAT 59.170 36.000 8.23 0.00 44.79 1.28
2011 2102 2.829043 TTCGCACGCACGCTAAGGAT 62.829 55.000 0.00 0.00 0.00 3.24
2023 2114 0.238289 ATTGTTTCCTGCTTCGCACG 59.762 50.000 0.00 0.00 33.79 5.34
2027 2118 6.128445 CCATATAGCTATTGTTTCCTGCTTCG 60.128 42.308 12.39 0.00 35.47 3.79
2067 2158 2.703416 TGTACCTGAGCAGCTTCATTG 58.297 47.619 0.00 0.00 0.00 2.82
2114 2205 4.332268 GCTGTTGCCTGAAATGAAACAAAA 59.668 37.500 0.00 0.00 30.90 2.44
2161 2252 6.713450 GGGAGTAGTATTTGACAAACTTTGGA 59.287 38.462 1.94 0.00 34.12 3.53
2162 2253 6.715264 AGGGAGTAGTATTTGACAAACTTTGG 59.285 38.462 1.94 0.00 34.12 3.28
2189 2280 7.674471 AGCTTGAGACACTTATTTTAAGACC 57.326 36.000 1.47 0.00 0.00 3.85
2216 2307 8.576442 CCCAAAATAAGTGTCTCAACTTTGTAT 58.424 33.333 0.00 0.00 40.77 2.29
2365 2569 8.364142 ACTCTTCAGATAACCATATAAGAGCAC 58.636 37.037 0.00 0.00 36.27 4.40
2421 2625 5.142061 TCAAAGTACCGCTATGTCTTTCA 57.858 39.130 0.00 0.00 0.00 2.69
3452 3663 2.736192 CAGTGTGCATACAACATCGTCA 59.264 45.455 16.44 0.00 38.82 4.35
3786 3998 6.033513 GCCAAGAAACGAATAAATGTAGCAAC 59.966 38.462 0.00 0.00 0.00 4.17
3883 4096 5.049474 TGCAGCACAATTGTAAGAACTACAG 60.049 40.000 11.53 0.00 41.57 2.74
3884 4097 4.819088 TGCAGCACAATTGTAAGAACTACA 59.181 37.500 11.53 2.68 38.81 2.74
3945 4158 8.432013 ACTGCTTACATCATTCAATGGAGTATA 58.568 33.333 0.00 0.00 0.00 1.47
3952 4165 4.357142 GCCACTGCTTACATCATTCAATG 58.643 43.478 0.00 0.00 33.53 2.82
4287 4500 5.156355 CAATTGCTACAGTGTTTTGCTAGG 58.844 41.667 0.00 0.00 0.00 3.02
4288 4501 5.762045 ACAATTGCTACAGTGTTTTGCTAG 58.238 37.500 5.05 0.00 0.00 3.42
4365 4578 6.212888 AGCTTCAAAAATAGTATGCCTTGG 57.787 37.500 0.00 0.00 0.00 3.61
4477 4690 4.660789 ATGAAGGAGTATTTTGCATGGC 57.339 40.909 0.00 0.00 0.00 4.40
4527 4740 3.057969 TGCACAAAGACAGGTGATAGG 57.942 47.619 0.00 0.00 37.18 2.57
4885 5098 4.017877 GCTGCAGTGCACCACGAC 62.018 66.667 15.37 0.00 39.64 4.34
4918 5131 1.071471 CCACGGAAGTTCAGGCAGT 59.929 57.895 7.93 0.00 46.40 4.40
4930 5143 3.071206 GAGAGGAGCAGCCACGGA 61.071 66.667 0.00 0.00 40.02 4.69
5080 5293 2.280524 CTGAACGGTGGCGGTTCA 60.281 61.111 17.11 17.11 46.18 3.18
5086 5299 0.036388 TCAAGATCCTGAACGGTGGC 60.036 55.000 0.00 0.00 0.00 5.01
5152 5365 3.061848 CGGCCTGGGCAAACGATT 61.062 61.111 21.03 0.00 44.11 3.34
5283 5496 3.307906 TCCACCCACCGTTCGGAG 61.308 66.667 18.28 9.90 0.00 4.63
5312 5525 3.134458 GCTCCATGGTGTAGCTTACATC 58.866 50.000 12.58 0.00 41.34 3.06
5360 5573 0.249238 CGTGTGAGGCCATAGAGCTC 60.249 60.000 5.01 5.27 0.00 4.09
5371 5584 0.174389 CCCATCTGTCTCGTGTGAGG 59.826 60.000 0.00 0.00 42.79 3.86
5380 5593 3.392616 ACTTGACAAGTTCCCATCTGTCT 59.607 43.478 15.23 0.00 39.04 3.41
5406 5619 0.731514 GTCTTCGTCAACGCCGATCA 60.732 55.000 0.00 0.00 39.60 2.92
5413 5626 4.117372 GCGCCGTCTTCGTCAACG 62.117 66.667 0.00 0.00 41.45 4.10
5449 5662 2.125106 GTGACCACCAGCCGATCC 60.125 66.667 0.00 0.00 0.00 3.36
5488 5701 2.113139 CGGTTGGCCCAGACACTT 59.887 61.111 0.00 0.00 0.00 3.16
5587 5800 4.809426 ACGAGTTCGAACACTTTGAAGAAT 59.191 37.500 28.78 4.53 43.02 2.40
5645 5858 1.181098 ACCTCTGCCCATTTGTGTGC 61.181 55.000 0.00 0.00 0.00 4.57
5657 5870 0.747283 CCCAAGCTCATCACCTCTGC 60.747 60.000 0.00 0.00 0.00 4.26
5743 5956 3.136443 AGATGTGGTTTCTCTTCACACCA 59.864 43.478 0.00 0.00 43.03 4.17
5842 6055 0.324614 ACACGGAATCACCATCAGCA 59.675 50.000 0.00 0.00 38.90 4.41
5914 6127 2.492484 GACATAGTATCCTACTGCCCCG 59.508 54.545 0.00 0.00 39.81 5.73
5957 6170 1.460255 CTTGGGGGAGAAGCCACAA 59.540 57.895 0.00 0.00 44.24 3.33
6002 6215 4.035558 GTGCAGCAGCTAAGCAATACAATA 59.964 41.667 8.93 0.00 40.35 1.90
6191 6420 0.976641 TATCCGCCAGCTATTCCCAG 59.023 55.000 0.00 0.00 0.00 4.45
6203 6432 4.335315 TGTTCATTTGAGTTCATATCCGCC 59.665 41.667 0.00 0.00 0.00 6.13
6241 6470 7.275779 ACATGACACATTACTTATCAGACGTTC 59.724 37.037 0.00 0.00 0.00 3.95
6300 6537 3.865164 CAGGCAAACACAAGTTCTTTTCC 59.135 43.478 0.00 0.00 36.84 3.13
6306 6543 2.682856 TCACTCAGGCAAACACAAGTTC 59.317 45.455 0.00 0.00 36.84 3.01
6308 6545 2.418368 TCACTCAGGCAAACACAAGT 57.582 45.000 0.00 0.00 0.00 3.16
6309 6546 2.880268 TGATCACTCAGGCAAACACAAG 59.120 45.455 0.00 0.00 0.00 3.16
6311 6548 2.636647 TGATCACTCAGGCAAACACA 57.363 45.000 0.00 0.00 0.00 3.72
6312 6549 3.632189 GTTTGATCACTCAGGCAAACAC 58.368 45.455 0.00 0.00 45.59 3.32
6337 6576 6.599638 ACTGCTGTCAAGAAAATTATAGGACC 59.400 38.462 0.00 0.00 0.00 4.46
6346 6585 5.221322 GGGAAAGAACTGCTGTCAAGAAAAT 60.221 40.000 0.00 0.00 32.01 1.82
6364 6603 1.276138 GCCCATGTTTCAAGGGGAAAG 59.724 52.381 11.23 0.00 45.76 2.62
6365 6604 1.347062 GCCCATGTTTCAAGGGGAAA 58.653 50.000 11.23 0.00 42.10 3.13
6368 6607 1.055040 TTTGCCCATGTTTCAAGGGG 58.945 50.000 11.23 8.36 42.10 4.79
6370 6609 2.145536 GCTTTTGCCCATGTTTCAAGG 58.854 47.619 0.00 0.00 40.15 3.61
6384 6623 5.467399 TCAATGAAATGAGGCAAAGCTTTTG 59.533 36.000 9.53 6.62 0.00 2.44
6417 6662 6.009115 GGAACAACACTTCCGTTCATAAAT 57.991 37.500 0.00 0.00 40.62 1.40
6440 6686 2.588877 CTAATGCACCCGGGAGCG 60.589 66.667 33.44 18.27 34.50 5.03
6511 6757 7.337150 ACTTTGCATGTTGATAAAACATTCG 57.663 32.000 1.05 0.00 38.69 3.34
6547 6793 0.109179 CCGGACGTCCACGAATGTTA 60.109 55.000 32.80 0.00 43.02 2.41
6630 6876 1.695242 TCGTGGAGGTCTAGGCAAAAA 59.305 47.619 0.00 0.00 0.00 1.94
6658 6904 5.036737 ACAAACAAATTCTCGTGCTGAAAG 58.963 37.500 0.00 0.00 0.00 2.62
6661 6907 4.350346 CAACAAACAAATTCTCGTGCTGA 58.650 39.130 0.00 0.00 0.00 4.26
6662 6908 3.486841 CCAACAAACAAATTCTCGTGCTG 59.513 43.478 0.00 0.00 0.00 4.41
6780 7028 4.887748 ACAGACATGGAGTTTCTGTACTG 58.112 43.478 12.77 0.00 46.45 2.74
6799 7056 7.402811 TTCGAGTGTTGTACTTCATTAACAG 57.597 36.000 0.00 0.00 40.53 3.16
6800 7057 7.654116 TCATTCGAGTGTTGTACTTCATTAACA 59.346 33.333 7.87 0.00 40.53 2.41
6815 7072 0.965866 TCGAGCCCTCATTCGAGTGT 60.966 55.000 7.87 0.00 40.55 3.55
6820 7077 0.179100 ATGTGTCGAGCCCTCATTCG 60.179 55.000 0.00 0.00 38.13 3.34
6831 7088 1.119684 CCCCTCCATGTATGTGTCGA 58.880 55.000 0.00 0.00 0.00 4.20
6837 7094 4.081972 CGAGAGTAATCCCCTCCATGTATG 60.082 50.000 0.00 0.00 0.00 2.39
6862 7119 2.816958 CTTGAGCGCGGTCATGCT 60.817 61.111 37.83 11.89 45.90 3.79
6866 7123 3.807631 AAGCACTTGAGCGCGGTCA 62.808 57.895 34.84 34.84 40.15 4.02
6868 7125 3.044305 GAAGCACTTGAGCGCGGT 61.044 61.111 12.23 12.23 40.15 5.68
6894 7151 1.145377 ACCAAGTTCGAGGCGTGTT 59.855 52.632 0.00 0.00 0.00 3.32
6905 7163 4.215109 ACTATCTTTGCCAACACCAAGTT 58.785 39.130 0.00 0.00 42.42 2.66
6911 7169 4.218417 ACCAATGACTATCTTTGCCAACAC 59.782 41.667 0.19 0.00 32.21 3.32
6970 7228 3.088532 CGTCTTGGGAAATTGGAATGGA 58.911 45.455 0.00 0.00 0.00 3.41
6971 7229 2.825532 ACGTCTTGGGAAATTGGAATGG 59.174 45.455 0.00 0.00 0.00 3.16
6973 7231 3.758554 CTCACGTCTTGGGAAATTGGAAT 59.241 43.478 0.00 0.00 0.00 3.01
6998 7256 2.124570 CGTTGGCCTCCCTCATGG 60.125 66.667 3.32 0.00 0.00 3.66
7014 7272 2.032860 ATGGTCATCGGAGGAAGGCG 62.033 60.000 0.00 0.00 0.00 5.52
7044 7302 0.545171 TTGGTGGGTGGTTCGTTGTA 59.455 50.000 0.00 0.00 0.00 2.41
7048 7306 1.684450 GAAAATTGGTGGGTGGTTCGT 59.316 47.619 0.00 0.00 0.00 3.85
7053 7311 1.655372 ATGGGAAAATTGGTGGGTGG 58.345 50.000 0.00 0.00 0.00 4.61
7054 7312 4.469227 TCATAATGGGAAAATTGGTGGGTG 59.531 41.667 0.00 0.00 0.00 4.61
7055 7313 4.693420 TCATAATGGGAAAATTGGTGGGT 58.307 39.130 0.00 0.00 0.00 4.51
7056 7314 5.690464 TTCATAATGGGAAAATTGGTGGG 57.310 39.130 0.00 0.00 0.00 4.61
7069 7327 7.193595 GTCGATTAACCCAACTTTCATAATGG 58.806 38.462 0.00 0.00 0.00 3.16
7083 7341 2.686915 TCTCTCCTTCGTCGATTAACCC 59.313 50.000 0.00 0.00 0.00 4.11
7086 7344 5.340803 CACAATCTCTCCTTCGTCGATTAA 58.659 41.667 0.00 0.00 0.00 1.40
7087 7345 4.202020 CCACAATCTCTCCTTCGTCGATTA 60.202 45.833 0.00 0.00 0.00 1.75
7095 7353 2.834549 TGGTCTCCACAATCTCTCCTTC 59.165 50.000 0.00 0.00 0.00 3.46
7096 7354 2.907892 TGGTCTCCACAATCTCTCCTT 58.092 47.619 0.00 0.00 0.00 3.36
7118 7376 2.846206 TGGACCATGCTAAGAGATTGGT 59.154 45.455 0.00 0.00 43.19 3.67
7127 7385 0.878416 GCACGTTTGGACCATGCTAA 59.122 50.000 10.03 0.00 33.66 3.09
7154 7420 0.390603 CCTTATGTTCCACGGTCGCA 60.391 55.000 0.00 0.00 0.00 5.10
7156 7422 1.337447 ACACCTTATGTTCCACGGTCG 60.337 52.381 0.00 0.00 38.98 4.79
7160 7426 1.518325 TGCACACCTTATGTTCCACG 58.482 50.000 0.00 0.00 40.64 4.94
7161 7427 2.621055 TGTTGCACACCTTATGTTCCAC 59.379 45.455 0.00 0.00 40.64 4.02
7181 7447 2.289565 GAAATAGAGCCCCGGAAACTG 58.710 52.381 0.73 0.00 0.00 3.16
7189 7455 1.943340 CGAGCTTTGAAATAGAGCCCC 59.057 52.381 0.00 0.00 37.11 5.80
7208 7474 3.657537 CTGAACCGCAGCTTTTACG 57.342 52.632 0.00 0.00 37.90 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.