Multiple sequence alignment - TraesCS3B01G046000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G046000 chr3B 100.000 2546 0 0 1 2546 23359917 23362462 0.000000e+00 4702.0
1 TraesCS3B01G046000 chr3B 92.537 268 10 4 138 402 23165706 23165446 2.390000e-100 375.0
2 TraesCS3B01G046000 chr3B 91.005 189 11 3 217 402 23389064 23389249 1.510000e-62 250.0
3 TraesCS3B01G046000 chr3B 79.755 326 21 9 95 402 23173397 23173099 7.190000e-46 195.0
4 TraesCS3B01G046000 chr3B 94.488 127 5 1 1 127 23386688 23386812 7.190000e-46 195.0
5 TraesCS3B01G046000 chr3B 89.286 84 4 3 1 81 23173539 23173458 1.610000e-17 100.0
6 TraesCS3B01G046000 chr3B 96.296 54 2 0 139 192 23389013 23389066 3.490000e-14 89.8
7 TraesCS3B01G046000 chr5A 98.458 1946 22 3 601 2546 632263797 632261860 0.000000e+00 3421.0
8 TraesCS3B01G046000 chr5A 97.030 202 6 0 402 603 632264334 632264133 8.720000e-90 340.0
9 TraesCS3B01G046000 chr6A 97.421 698 11 2 402 1097 2844978 2845670 0.000000e+00 1182.0
10 TraesCS3B01G046000 chr1B 88.103 975 58 22 749 1684 636795788 636796743 0.000000e+00 1105.0
11 TraesCS3B01G046000 chr1B 90.756 119 11 0 398 516 628647859 628647741 2.620000e-35 159.0
12 TraesCS3B01G046000 chr1B 93.548 62 4 0 516 577 628647351 628647290 2.700000e-15 93.5
13 TraesCS3B01G046000 chr1A 88.080 948 69 26 749 1663 554018026 554018962 0.000000e+00 1085.0
14 TraesCS3B01G046000 chr1D 87.171 951 90 22 749 1684 462148279 462149212 0.000000e+00 1051.0
15 TraesCS3B01G046000 chr4A 92.964 668 40 5 1880 2545 659674475 659675137 0.000000e+00 966.0
16 TraesCS3B01G046000 chr4A 93.359 512 31 3 1880 2390 659630676 659631185 0.000000e+00 754.0
17 TraesCS3B01G046000 chr4A 92.965 199 13 1 1678 1875 659673680 659673878 3.200000e-74 289.0
18 TraesCS3B01G046000 chr4A 92.462 199 14 1 1678 1875 659629871 659630069 1.490000e-72 283.0
19 TraesCS3B01G046000 chr4A 93.750 160 10 0 2386 2545 659636766 659636925 9.100000e-60 241.0
20 TraesCS3B01G046000 chr4A 91.124 169 7 4 516 684 659622096 659622256 3.300000e-54 222.0
21 TraesCS3B01G046000 chr4A 95.690 116 5 0 401 516 668365990 668366105 1.200000e-43 187.0
22 TraesCS3B01G046000 chr4A 87.500 80 8 2 677 755 659627418 659627496 9.700000e-15 91.6
23 TraesCS3B01G046000 chr2B 90.083 242 13 4 516 756 51203084 51202853 1.140000e-78 303.0
24 TraesCS3B01G046000 chr2B 94.828 116 6 0 402 517 51203936 51203821 5.600000e-42 182.0
25 TraesCS3B01G046000 chr3D 86.477 281 24 7 132 402 16043530 16043806 1.920000e-76 296.0
26 TraesCS3B01G046000 chr7B 94.783 115 6 0 402 516 446677160 446677046 2.010000e-41 180.0
27 TraesCS3B01G046000 chr7B 97.115 104 3 0 706 809 446677023 446676920 2.600000e-40 176.0
28 TraesCS3B01G046000 chr3A 94.783 115 6 0 402 516 547228258 547228372 2.010000e-41 180.0
29 TraesCS3B01G046000 chr3A 96.154 104 4 0 706 809 547228395 547228498 1.210000e-38 171.0
30 TraesCS3B01G046000 chr2A 94.783 115 6 0 402 516 5661612 5661726 2.010000e-41 180.0
31 TraesCS3B01G046000 chr2A 93.043 115 8 0 402 516 161278036 161278150 4.360000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G046000 chr3B 23359917 23362462 2545 False 4702.0 4702 100.0000 1 2546 1 chr3B.!!$F1 2545
1 TraesCS3B01G046000 chr5A 632261860 632264334 2474 True 1880.5 3421 97.7440 402 2546 2 chr5A.!!$R1 2144
2 TraesCS3B01G046000 chr6A 2844978 2845670 692 False 1182.0 1182 97.4210 402 1097 1 chr6A.!!$F1 695
3 TraesCS3B01G046000 chr1B 636795788 636796743 955 False 1105.0 1105 88.1030 749 1684 1 chr1B.!!$F1 935
4 TraesCS3B01G046000 chr1A 554018026 554018962 936 False 1085.0 1085 88.0800 749 1663 1 chr1A.!!$F1 914
5 TraesCS3B01G046000 chr1D 462148279 462149212 933 False 1051.0 1051 87.1710 749 1684 1 chr1D.!!$F1 935
6 TraesCS3B01G046000 chr4A 659673680 659675137 1457 False 627.5 966 92.9645 1678 2545 2 chr4A.!!$F5 867
7 TraesCS3B01G046000 chr4A 659627418 659631185 3767 False 376.2 754 91.1070 677 2390 3 chr4A.!!$F4 1713
8 TraesCS3B01G046000 chr2B 51202853 51203936 1083 True 242.5 303 92.4555 402 756 2 chr2B.!!$R1 354

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
378 379 0.036765 CCTGGTGGATCGACGGAAAA 60.037 55.0 1.47 0.00 34.57 2.29 F
386 387 0.108662 ATCGACGGAAAACCGGTACC 60.109 55.0 8.00 11.51 37.53 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1246 3774 1.797211 GCAGTAGTAGCGGCGGATCT 61.797 60.000 9.78 0.0 0.0 2.75 R
2336 5877 2.623416 GGCAAAGAAAGGTACAAGTGCT 59.377 45.455 0.00 0.0 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.889988 CGACGGCCATCGATGCAA 60.890 61.111 17.97 0.00 45.13 4.08
19 20 2.246739 CGACGGCCATCGATGCAAT 61.247 57.895 17.97 4.69 45.13 3.56
20 21 1.571460 GACGGCCATCGATGCAATC 59.429 57.895 20.25 10.14 42.43 2.67
21 22 0.882042 GACGGCCATCGATGCAATCT 60.882 55.000 20.25 0.32 42.58 2.40
22 23 0.392706 ACGGCCATCGATGCAATCTA 59.607 50.000 20.25 0.00 42.58 1.98
23 24 0.792640 CGGCCATCGATGCAATCTAC 59.207 55.000 20.25 3.47 42.58 2.59
24 25 1.160137 GGCCATCGATGCAATCTACC 58.840 55.000 20.25 7.85 42.58 3.18
25 26 1.160137 GCCATCGATGCAATCTACCC 58.840 55.000 20.25 0.00 42.58 3.69
26 27 1.543208 GCCATCGATGCAATCTACCCA 60.543 52.381 20.25 0.00 42.58 4.51
27 28 2.849942 CCATCGATGCAATCTACCCAA 58.150 47.619 20.25 0.00 42.58 4.12
28 29 2.810274 CCATCGATGCAATCTACCCAAG 59.190 50.000 20.25 0.00 42.58 3.61
29 30 3.470709 CATCGATGCAATCTACCCAAGT 58.529 45.455 13.37 0.00 42.58 3.16
30 31 4.503123 CCATCGATGCAATCTACCCAAGTA 60.503 45.833 20.25 0.00 42.58 2.24
31 32 4.054780 TCGATGCAATCTACCCAAGTAC 57.945 45.455 0.00 0.00 42.58 2.73
32 33 3.131396 CGATGCAATCTACCCAAGTACC 58.869 50.000 0.00 0.00 42.58 3.34
33 34 3.477530 GATGCAATCTACCCAAGTACCC 58.522 50.000 0.00 0.00 41.17 3.69
34 35 2.270858 TGCAATCTACCCAAGTACCCA 58.729 47.619 0.00 0.00 0.00 4.51
35 36 2.645297 TGCAATCTACCCAAGTACCCAA 59.355 45.455 0.00 0.00 0.00 4.12
36 37 3.014623 GCAATCTACCCAAGTACCCAAC 58.985 50.000 0.00 0.00 0.00 3.77
37 38 3.617284 CAATCTACCCAAGTACCCAACC 58.383 50.000 0.00 0.00 0.00 3.77
38 39 2.419457 TCTACCCAAGTACCCAACCA 57.581 50.000 0.00 0.00 0.00 3.67
39 40 2.703947 TCTACCCAAGTACCCAACCAA 58.296 47.619 0.00 0.00 0.00 3.67
40 41 3.261962 TCTACCCAAGTACCCAACCAAT 58.738 45.455 0.00 0.00 0.00 3.16
41 42 3.658705 TCTACCCAAGTACCCAACCAATT 59.341 43.478 0.00 0.00 0.00 2.32
42 43 2.884320 ACCCAAGTACCCAACCAATTC 58.116 47.619 0.00 0.00 0.00 2.17
43 44 2.176045 CCCAAGTACCCAACCAATTCC 58.824 52.381 0.00 0.00 0.00 3.01
44 45 1.816224 CCAAGTACCCAACCAATTCCG 59.184 52.381 0.00 0.00 0.00 4.30
45 46 1.201414 CAAGTACCCAACCAATTCCGC 59.799 52.381 0.00 0.00 0.00 5.54
46 47 0.675522 AGTACCCAACCAATTCCGCG 60.676 55.000 0.00 0.00 0.00 6.46
47 48 2.041686 TACCCAACCAATTCCGCGC 61.042 57.895 0.00 0.00 0.00 6.86
48 49 4.128388 CCCAACCAATTCCGCGCC 62.128 66.667 0.00 0.00 0.00 6.53
49 50 4.474846 CCAACCAATTCCGCGCCG 62.475 66.667 0.00 0.00 0.00 6.46
50 51 3.732892 CAACCAATTCCGCGCCGT 61.733 61.111 0.00 0.00 0.00 5.68
51 52 3.428282 AACCAATTCCGCGCCGTC 61.428 61.111 0.00 0.00 0.00 4.79
74 75 2.473378 TCGACGACGACGAAGAGC 59.527 61.111 19.29 0.00 43.81 4.09
75 76 2.573689 CGACGACGACGAAGAGCC 60.574 66.667 15.32 0.00 42.66 4.70
76 77 2.559840 GACGACGACGAAGAGCCA 59.440 61.111 15.32 0.00 42.66 4.75
77 78 1.512310 GACGACGACGAAGAGCCAG 60.512 63.158 15.32 0.00 42.66 4.85
78 79 2.185103 GACGACGACGAAGAGCCAGT 62.185 60.000 15.32 0.00 42.66 4.00
79 80 0.952497 ACGACGACGAAGAGCCAGTA 60.952 55.000 15.32 0.00 42.66 2.74
80 81 0.247735 CGACGACGAAGAGCCAGTAG 60.248 60.000 0.00 0.00 42.66 2.57
81 82 0.523757 GACGACGAAGAGCCAGTAGC 60.524 60.000 0.00 0.00 44.25 3.58
82 83 1.226717 CGACGAAGAGCCAGTAGCC 60.227 63.158 0.00 0.00 45.47 3.93
83 84 1.142097 GACGAAGAGCCAGTAGCCC 59.858 63.158 0.00 0.00 45.47 5.19
84 85 2.299503 GACGAAGAGCCAGTAGCCCC 62.300 65.000 0.00 0.00 45.47 5.80
85 86 2.911928 GAAGAGCCAGTAGCCCCC 59.088 66.667 0.00 0.00 45.47 5.40
86 87 1.690985 GAAGAGCCAGTAGCCCCCT 60.691 63.158 0.00 0.00 45.47 4.79
87 88 0.398664 GAAGAGCCAGTAGCCCCCTA 60.399 60.000 0.00 0.00 45.47 3.53
88 89 0.691413 AAGAGCCAGTAGCCCCCTAC 60.691 60.000 0.00 0.00 45.47 3.18
89 90 2.444140 AGCCAGTAGCCCCCTACG 60.444 66.667 0.00 0.00 46.81 3.51
90 91 2.762875 GCCAGTAGCCCCCTACGT 60.763 66.667 0.00 0.00 46.81 3.57
91 92 1.456331 GCCAGTAGCCCCCTACGTA 60.456 63.158 0.00 0.00 46.81 3.57
92 93 0.830866 GCCAGTAGCCCCCTACGTAT 60.831 60.000 0.00 0.00 46.81 3.06
93 94 0.966920 CCAGTAGCCCCCTACGTATG 59.033 60.000 0.00 0.00 46.81 2.39
94 95 1.479942 CCAGTAGCCCCCTACGTATGA 60.480 57.143 0.00 0.00 46.81 2.15
95 96 2.526432 CAGTAGCCCCCTACGTATGAT 58.474 52.381 0.00 0.00 46.81 2.45
96 97 2.492484 CAGTAGCCCCCTACGTATGATC 59.508 54.545 0.00 0.00 46.81 2.92
97 98 2.379226 AGTAGCCCCCTACGTATGATCT 59.621 50.000 0.00 0.00 46.81 2.75
98 99 3.590630 AGTAGCCCCCTACGTATGATCTA 59.409 47.826 0.00 0.00 46.81 1.98
99 100 2.805194 AGCCCCCTACGTATGATCTAC 58.195 52.381 0.00 0.00 0.00 2.59
100 101 1.471684 GCCCCCTACGTATGATCTACG 59.528 57.143 17.54 17.54 45.44 3.51
108 109 2.299170 CGTATGATCTACGTGTGAGCG 58.701 52.381 0.00 0.00 36.31 5.03
109 110 2.033151 CGTATGATCTACGTGTGAGCGA 60.033 50.000 0.00 0.00 36.31 4.93
110 111 3.364068 CGTATGATCTACGTGTGAGCGAT 60.364 47.826 0.00 0.00 36.31 4.58
111 112 3.717400 ATGATCTACGTGTGAGCGATT 57.283 42.857 0.00 0.00 35.59 3.34
112 113 4.830826 ATGATCTACGTGTGAGCGATTA 57.169 40.909 0.00 0.00 35.59 1.75
113 114 4.625972 TGATCTACGTGTGAGCGATTAA 57.374 40.909 0.00 0.00 35.59 1.40
114 115 4.989044 TGATCTACGTGTGAGCGATTAAA 58.011 39.130 0.00 0.00 35.59 1.52
115 116 5.588240 TGATCTACGTGTGAGCGATTAAAT 58.412 37.500 0.00 0.00 35.59 1.40
116 117 6.040247 TGATCTACGTGTGAGCGATTAAATT 58.960 36.000 0.00 0.00 35.59 1.82
117 118 7.197703 TGATCTACGTGTGAGCGATTAAATTA 58.802 34.615 0.00 0.00 35.59 1.40
118 119 7.703197 TGATCTACGTGTGAGCGATTAAATTAA 59.297 33.333 0.00 0.00 35.59 1.40
119 120 7.815398 TCTACGTGTGAGCGATTAAATTAAA 57.185 32.000 0.00 0.00 35.59 1.52
120 121 8.242085 TCTACGTGTGAGCGATTAAATTAAAA 57.758 30.769 0.00 0.00 35.59 1.52
121 122 8.164153 TCTACGTGTGAGCGATTAAATTAAAAC 58.836 33.333 0.00 0.00 35.59 2.43
122 123 6.894828 ACGTGTGAGCGATTAAATTAAAACT 58.105 32.000 0.00 0.00 35.59 2.66
123 124 7.357303 ACGTGTGAGCGATTAAATTAAAACTT 58.643 30.769 0.00 0.00 35.59 2.66
124 125 7.858879 ACGTGTGAGCGATTAAATTAAAACTTT 59.141 29.630 0.00 0.00 35.59 2.66
125 126 9.320406 CGTGTGAGCGATTAAATTAAAACTTTA 57.680 29.630 0.00 0.00 0.00 1.85
142 143 8.514330 AAAACTTTATCAGTTGTGTCTAACCA 57.486 30.769 0.00 0.00 45.77 3.67
143 144 8.514330 AAACTTTATCAGTTGTGTCTAACCAA 57.486 30.769 0.00 0.00 45.77 3.67
144 145 8.691661 AACTTTATCAGTTGTGTCTAACCAAT 57.308 30.769 0.00 0.00 44.70 3.16
145 146 8.324163 ACTTTATCAGTTGTGTCTAACCAATC 57.676 34.615 0.00 0.00 27.32 2.67
146 147 6.961359 TTATCAGTTGTGTCTAACCAATCG 57.039 37.500 0.00 0.00 0.00 3.34
147 148 4.330944 TCAGTTGTGTCTAACCAATCGT 57.669 40.909 0.00 0.00 0.00 3.73
148 149 4.699637 TCAGTTGTGTCTAACCAATCGTT 58.300 39.130 0.00 0.00 38.57 3.85
149 150 4.509970 TCAGTTGTGTCTAACCAATCGTTG 59.490 41.667 0.00 0.00 35.79 4.10
150 151 3.250040 AGTTGTGTCTAACCAATCGTTGC 59.750 43.478 0.00 0.00 35.79 4.17
151 152 2.839975 TGTGTCTAACCAATCGTTGCA 58.160 42.857 0.00 0.00 35.79 4.08
152 153 3.206964 TGTGTCTAACCAATCGTTGCAA 58.793 40.909 0.00 0.00 35.79 4.08
153 154 3.002862 TGTGTCTAACCAATCGTTGCAAC 59.997 43.478 19.89 19.89 35.79 4.17
154 155 3.250040 GTGTCTAACCAATCGTTGCAACT 59.750 43.478 26.09 6.77 35.79 3.16
155 156 4.449743 GTGTCTAACCAATCGTTGCAACTA 59.550 41.667 26.09 17.00 35.79 2.24
156 157 5.121768 GTGTCTAACCAATCGTTGCAACTAT 59.878 40.000 26.09 18.55 35.79 2.12
157 158 6.311935 GTGTCTAACCAATCGTTGCAACTATA 59.688 38.462 26.09 12.59 35.79 1.31
158 159 6.533723 TGTCTAACCAATCGTTGCAACTATAG 59.466 38.462 26.09 17.32 35.79 1.31
159 160 6.534079 GTCTAACCAATCGTTGCAACTATAGT 59.466 38.462 26.09 17.89 35.79 2.12
160 161 7.703621 GTCTAACCAATCGTTGCAACTATAGTA 59.296 37.037 26.09 10.57 35.79 1.82
161 162 6.903883 AACCAATCGTTGCAACTATAGTAG 57.096 37.500 26.09 9.76 31.79 2.57
162 163 5.974108 ACCAATCGTTGCAACTATAGTAGT 58.026 37.500 26.09 13.27 41.73 2.73
163 164 5.810587 ACCAATCGTTGCAACTATAGTAGTG 59.189 40.000 26.09 14.88 39.39 2.74
164 165 5.276868 CCAATCGTTGCAACTATAGTAGTGC 60.277 44.000 26.09 18.66 39.39 4.40
165 166 4.713824 TCGTTGCAACTATAGTAGTGCT 57.286 40.909 26.09 0.30 39.39 4.40
166 167 5.823209 TCGTTGCAACTATAGTAGTGCTA 57.177 39.130 26.09 16.57 39.39 3.49
167 168 6.387041 TCGTTGCAACTATAGTAGTGCTAT 57.613 37.500 26.09 6.01 42.63 2.97
168 169 6.436261 TCGTTGCAACTATAGTAGTGCTATC 58.564 40.000 26.09 15.02 40.61 2.08
169 170 6.262496 TCGTTGCAACTATAGTAGTGCTATCT 59.738 38.462 26.09 0.00 40.61 1.98
170 171 6.918569 CGTTGCAACTATAGTAGTGCTATCTT 59.081 38.462 26.09 0.00 40.61 2.40
171 172 7.435488 CGTTGCAACTATAGTAGTGCTATCTTT 59.565 37.037 26.09 0.00 40.61 2.52
172 173 8.543774 GTTGCAACTATAGTAGTGCTATCTTTG 58.456 37.037 23.46 9.84 40.61 2.77
173 174 7.210174 TGCAACTATAGTAGTGCTATCTTTGG 58.790 38.462 23.46 4.35 40.61 3.28
174 175 6.647067 GCAACTATAGTAGTGCTATCTTTGGG 59.353 42.308 18.34 3.61 40.61 4.12
175 176 6.347859 ACTATAGTAGTGCTATCTTTGGGC 57.652 41.667 2.75 0.00 40.61 5.36
176 177 6.078664 ACTATAGTAGTGCTATCTTTGGGCT 58.921 40.000 2.75 0.00 40.61 5.19
177 178 5.896073 ATAGTAGTGCTATCTTTGGGCTT 57.104 39.130 0.00 0.00 35.59 4.35
178 179 4.576330 AGTAGTGCTATCTTTGGGCTTT 57.424 40.909 0.00 0.00 0.00 3.51
179 180 4.923415 AGTAGTGCTATCTTTGGGCTTTT 58.077 39.130 0.00 0.00 0.00 2.27
180 181 5.325239 AGTAGTGCTATCTTTGGGCTTTTT 58.675 37.500 0.00 0.00 0.00 1.94
181 182 4.525912 AGTGCTATCTTTGGGCTTTTTG 57.474 40.909 0.00 0.00 0.00 2.44
182 183 3.897505 AGTGCTATCTTTGGGCTTTTTGT 59.102 39.130 0.00 0.00 0.00 2.83
183 184 3.989817 GTGCTATCTTTGGGCTTTTTGTG 59.010 43.478 0.00 0.00 0.00 3.33
184 185 3.006752 TGCTATCTTTGGGCTTTTTGTGG 59.993 43.478 0.00 0.00 0.00 4.17
185 186 3.006859 GCTATCTTTGGGCTTTTTGTGGT 59.993 43.478 0.00 0.00 0.00 4.16
186 187 2.977772 TCTTTGGGCTTTTTGTGGTG 57.022 45.000 0.00 0.00 0.00 4.17
187 188 1.484240 TCTTTGGGCTTTTTGTGGTGG 59.516 47.619 0.00 0.00 0.00 4.61
188 189 0.107459 TTTGGGCTTTTTGTGGTGGC 60.107 50.000 0.00 0.00 0.00 5.01
189 190 2.028925 GGGCTTTTTGTGGTGGCG 59.971 61.111 0.00 0.00 0.00 5.69
190 191 2.661537 GGCTTTTTGTGGTGGCGC 60.662 61.111 0.00 0.00 0.00 6.53
191 192 2.661537 GCTTTTTGTGGTGGCGCC 60.662 61.111 22.73 22.73 37.90 6.53
192 193 3.128375 CTTTTTGTGGTGGCGCCT 58.872 55.556 29.70 0.00 38.35 5.52
193 194 1.007387 CTTTTTGTGGTGGCGCCTC 60.007 57.895 29.70 24.78 38.35 4.70
194 195 2.420466 CTTTTTGTGGTGGCGCCTCC 62.420 60.000 35.31 35.31 38.35 4.30
195 196 2.920076 TTTTTGTGGTGGCGCCTCCT 62.920 55.000 39.01 0.00 38.35 3.69
196 197 2.920076 TTTTGTGGTGGCGCCTCCTT 62.920 55.000 39.01 0.00 38.35 3.36
197 198 2.058125 TTTGTGGTGGCGCCTCCTTA 62.058 55.000 39.01 27.73 38.35 2.69
198 199 2.125106 GTGGTGGCGCCTCCTTAG 60.125 66.667 39.01 0.00 38.35 2.18
199 200 3.399181 TGGTGGCGCCTCCTTAGG 61.399 66.667 39.01 0.00 46.76 2.69
200 201 3.400054 GGTGGCGCCTCCTTAGGT 61.400 66.667 34.81 0.00 45.64 3.08
207 208 1.749033 GCCTCCTTAGGTGATCCCG 59.251 63.158 1.39 0.00 45.64 5.14
208 209 0.759436 GCCTCCTTAGGTGATCCCGA 60.759 60.000 1.39 0.00 45.64 5.14
209 210 1.041437 CCTCCTTAGGTGATCCCGAC 58.959 60.000 1.39 0.00 38.19 4.79
210 211 1.041437 CTCCTTAGGTGATCCCGACC 58.959 60.000 0.00 0.00 38.74 4.79
211 212 0.754217 TCCTTAGGTGATCCCGACCG 60.754 60.000 0.00 0.00 38.64 4.79
212 213 1.740285 CTTAGGTGATCCCGACCGG 59.260 63.158 0.00 0.00 38.64 5.28
213 214 2.365095 CTTAGGTGATCCCGACCGGC 62.365 65.000 0.00 0.00 38.64 6.13
233 234 4.728110 GCCGGCCGGGGTTTAACT 62.728 66.667 43.31 0.00 35.78 2.24
234 235 2.034532 CCGGCCGGGGTTTAACTT 59.965 61.111 37.42 0.00 0.00 2.66
235 236 1.604308 CCGGCCGGGGTTTAACTTT 60.604 57.895 37.42 0.00 0.00 2.66
236 237 1.180456 CCGGCCGGGGTTTAACTTTT 61.180 55.000 37.42 0.00 0.00 2.27
237 238 0.241749 CGGCCGGGGTTTAACTTTTC 59.758 55.000 20.10 0.00 0.00 2.29
238 239 1.330234 GGCCGGGGTTTAACTTTTCA 58.670 50.000 2.18 0.00 0.00 2.69
239 240 1.897133 GGCCGGGGTTTAACTTTTCAT 59.103 47.619 2.18 0.00 0.00 2.57
240 241 3.090790 GGCCGGGGTTTAACTTTTCATA 58.909 45.455 2.18 0.00 0.00 2.15
241 242 3.129813 GGCCGGGGTTTAACTTTTCATAG 59.870 47.826 2.18 0.00 0.00 2.23
242 243 3.129813 GCCGGGGTTTAACTTTTCATAGG 59.870 47.826 2.18 0.00 0.00 2.57
243 244 4.591929 CCGGGGTTTAACTTTTCATAGGA 58.408 43.478 0.00 0.00 0.00 2.94
244 245 5.011586 CCGGGGTTTAACTTTTCATAGGAA 58.988 41.667 0.00 0.00 0.00 3.36
245 246 5.655090 CCGGGGTTTAACTTTTCATAGGAAT 59.345 40.000 0.00 0.00 31.93 3.01
246 247 6.183360 CCGGGGTTTAACTTTTCATAGGAATC 60.183 42.308 0.00 0.00 31.93 2.52
247 248 6.457799 CGGGGTTTAACTTTTCATAGGAATCG 60.458 42.308 0.00 0.00 31.93 3.34
248 249 6.600427 GGGGTTTAACTTTTCATAGGAATCGA 59.400 38.462 0.00 0.00 31.93 3.59
249 250 7.121611 GGGGTTTAACTTTTCATAGGAATCGAA 59.878 37.037 0.00 0.00 31.93 3.71
250 251 8.517056 GGGTTTAACTTTTCATAGGAATCGAAA 58.483 33.333 0.00 0.00 31.93 3.46
256 257 9.626045 AACTTTTCATAGGAATCGAAATCAAAC 57.374 29.630 0.00 0.00 31.93 2.93
257 258 9.014297 ACTTTTCATAGGAATCGAAATCAAACT 57.986 29.630 0.00 0.00 31.93 2.66
258 259 9.846248 CTTTTCATAGGAATCGAAATCAAACTT 57.154 29.630 0.00 0.00 31.93 2.66
259 260 9.624697 TTTTCATAGGAATCGAAATCAAACTTG 57.375 29.630 0.00 0.00 31.93 3.16
260 261 7.320443 TCATAGGAATCGAAATCAAACTTGG 57.680 36.000 0.00 0.00 0.00 3.61
261 262 4.440839 AGGAATCGAAATCAAACTTGGC 57.559 40.909 0.00 0.00 0.00 4.52
262 263 3.826157 AGGAATCGAAATCAAACTTGGCA 59.174 39.130 0.00 0.00 0.00 4.92
263 264 4.082571 AGGAATCGAAATCAAACTTGGCAG 60.083 41.667 0.00 0.00 0.00 4.85
264 265 2.704725 TCGAAATCAAACTTGGCAGC 57.295 45.000 0.00 0.00 0.00 5.25
265 266 1.269448 TCGAAATCAAACTTGGCAGCC 59.731 47.619 3.66 3.66 0.00 4.85
266 267 1.701704 GAAATCAAACTTGGCAGCCG 58.298 50.000 7.03 0.00 0.00 5.52
267 268 1.269448 GAAATCAAACTTGGCAGCCGA 59.731 47.619 7.03 3.46 0.00 5.54
268 269 1.327303 AATCAAACTTGGCAGCCGAA 58.673 45.000 7.03 1.45 0.00 4.30
269 270 0.883833 ATCAAACTTGGCAGCCGAAG 59.116 50.000 17.41 17.41 0.00 3.79
270 271 0.179032 TCAAACTTGGCAGCCGAAGA 60.179 50.000 23.01 8.94 0.00 2.87
271 272 0.667993 CAAACTTGGCAGCCGAAGAA 59.332 50.000 23.01 6.25 0.00 2.52
272 273 1.066908 CAAACTTGGCAGCCGAAGAAA 59.933 47.619 23.01 5.92 0.00 2.52
273 274 1.620822 AACTTGGCAGCCGAAGAAAT 58.379 45.000 23.01 10.82 0.00 2.17
274 275 1.620822 ACTTGGCAGCCGAAGAAATT 58.379 45.000 23.01 5.16 0.00 1.82
275 276 1.270550 ACTTGGCAGCCGAAGAAATTG 59.729 47.619 23.01 5.65 0.00 2.32
276 277 1.541147 CTTGGCAGCCGAAGAAATTGA 59.459 47.619 15.07 0.00 0.00 2.57
277 278 1.838112 TGGCAGCCGAAGAAATTGAT 58.162 45.000 7.03 0.00 0.00 2.57
278 279 1.473677 TGGCAGCCGAAGAAATTGATG 59.526 47.619 7.03 0.00 0.00 3.07
279 280 1.202336 GGCAGCCGAAGAAATTGATGG 60.202 52.381 0.00 0.00 0.00 3.51
280 281 1.745087 GCAGCCGAAGAAATTGATGGA 59.255 47.619 0.00 0.00 0.00 3.41
281 282 2.360165 GCAGCCGAAGAAATTGATGGAT 59.640 45.455 0.00 0.00 0.00 3.41
282 283 3.181483 GCAGCCGAAGAAATTGATGGATT 60.181 43.478 0.00 0.00 0.00 3.01
283 284 4.357142 CAGCCGAAGAAATTGATGGATTG 58.643 43.478 0.00 0.00 0.00 2.67
284 285 4.096833 CAGCCGAAGAAATTGATGGATTGA 59.903 41.667 0.00 0.00 0.00 2.57
285 286 4.706476 AGCCGAAGAAATTGATGGATTGAA 59.294 37.500 0.00 0.00 0.00 2.69
286 287 4.800471 GCCGAAGAAATTGATGGATTGAAC 59.200 41.667 0.00 0.00 0.00 3.18
287 288 5.030295 CCGAAGAAATTGATGGATTGAACG 58.970 41.667 0.00 0.00 0.00 3.95
288 289 5.030295 CGAAGAAATTGATGGATTGAACGG 58.970 41.667 0.00 0.00 0.00 4.44
289 290 5.163764 CGAAGAAATTGATGGATTGAACGGA 60.164 40.000 0.00 0.00 0.00 4.69
290 291 5.824904 AGAAATTGATGGATTGAACGGAG 57.175 39.130 0.00 0.00 0.00 4.63
291 292 5.500234 AGAAATTGATGGATTGAACGGAGA 58.500 37.500 0.00 0.00 0.00 3.71
292 293 6.125029 AGAAATTGATGGATTGAACGGAGAT 58.875 36.000 0.00 0.00 0.00 2.75
293 294 7.282585 AGAAATTGATGGATTGAACGGAGATA 58.717 34.615 0.00 0.00 0.00 1.98
294 295 7.443575 AGAAATTGATGGATTGAACGGAGATAG 59.556 37.037 0.00 0.00 0.00 2.08
295 296 5.614324 TTGATGGATTGAACGGAGATAGT 57.386 39.130 0.00 0.00 0.00 2.12
296 297 4.948847 TGATGGATTGAACGGAGATAGTG 58.051 43.478 0.00 0.00 0.00 2.74
297 298 3.819564 TGGATTGAACGGAGATAGTGG 57.180 47.619 0.00 0.00 0.00 4.00
298 299 3.104512 TGGATTGAACGGAGATAGTGGT 58.895 45.455 0.00 0.00 0.00 4.16
299 300 4.283337 TGGATTGAACGGAGATAGTGGTA 58.717 43.478 0.00 0.00 0.00 3.25
300 301 4.341235 TGGATTGAACGGAGATAGTGGTAG 59.659 45.833 0.00 0.00 0.00 3.18
301 302 4.341520 GGATTGAACGGAGATAGTGGTAGT 59.658 45.833 0.00 0.00 0.00 2.73
302 303 5.533903 GGATTGAACGGAGATAGTGGTAGTA 59.466 44.000 0.00 0.00 0.00 1.82
303 304 5.824904 TTGAACGGAGATAGTGGTAGTAC 57.175 43.478 0.00 0.00 0.00 2.73
304 305 5.108187 TGAACGGAGATAGTGGTAGTACT 57.892 43.478 0.00 0.00 34.71 2.73
305 306 6.239217 TGAACGGAGATAGTGGTAGTACTA 57.761 41.667 0.00 0.00 37.54 1.82
306 307 6.286758 TGAACGGAGATAGTGGTAGTACTAG 58.713 44.000 1.87 0.00 36.66 2.57
307 308 5.885449 ACGGAGATAGTGGTAGTACTAGT 57.115 43.478 1.87 0.00 36.66 2.57
308 309 5.852827 ACGGAGATAGTGGTAGTACTAGTC 58.147 45.833 1.87 0.00 36.66 2.59
309 310 5.365025 ACGGAGATAGTGGTAGTACTAGTCA 59.635 44.000 1.87 2.36 36.66 3.41
310 311 5.695816 CGGAGATAGTGGTAGTACTAGTCAC 59.304 48.000 20.39 20.39 36.66 3.67
311 312 6.590068 GGAGATAGTGGTAGTACTAGTCACA 58.410 44.000 25.63 17.11 36.66 3.58
312 313 7.225725 GGAGATAGTGGTAGTACTAGTCACAT 58.774 42.308 25.63 19.50 36.66 3.21
313 314 7.173562 GGAGATAGTGGTAGTACTAGTCACATG 59.826 44.444 25.63 0.00 36.66 3.21
314 315 7.575505 AGATAGTGGTAGTACTAGTCACATGT 58.424 38.462 25.63 17.07 36.66 3.21
315 316 7.716123 AGATAGTGGTAGTACTAGTCACATGTC 59.284 40.741 25.63 20.80 36.66 3.06
316 317 5.817784 AGTGGTAGTACTAGTCACATGTCT 58.182 41.667 25.63 11.36 0.00 3.41
317 318 6.246919 AGTGGTAGTACTAGTCACATGTCTT 58.753 40.000 25.63 10.87 0.00 3.01
318 319 7.400439 AGTGGTAGTACTAGTCACATGTCTTA 58.600 38.462 25.63 0.00 0.00 2.10
319 320 7.553402 AGTGGTAGTACTAGTCACATGTCTTAG 59.447 40.741 25.63 0.80 0.00 2.18
320 321 7.336427 GTGGTAGTACTAGTCACATGTCTTAGT 59.664 40.741 21.91 14.42 0.00 2.24
321 322 7.551974 TGGTAGTACTAGTCACATGTCTTAGTC 59.448 40.741 13.73 8.39 0.00 2.59
322 323 6.665474 AGTACTAGTCACATGTCTTAGTCG 57.335 41.667 13.73 0.00 0.00 4.18
323 324 6.404708 AGTACTAGTCACATGTCTTAGTCGA 58.595 40.000 13.73 0.00 0.00 4.20
324 325 5.804692 ACTAGTCACATGTCTTAGTCGAG 57.195 43.478 0.00 0.00 0.00 4.04
325 326 4.636648 ACTAGTCACATGTCTTAGTCGAGG 59.363 45.833 0.00 0.00 0.00 4.63
326 327 3.422796 AGTCACATGTCTTAGTCGAGGT 58.577 45.455 0.00 0.00 0.00 3.85
327 328 3.191581 AGTCACATGTCTTAGTCGAGGTG 59.808 47.826 0.00 0.00 0.00 4.00
328 329 3.190744 GTCACATGTCTTAGTCGAGGTGA 59.809 47.826 0.00 0.00 0.00 4.02
329 330 3.440522 TCACATGTCTTAGTCGAGGTGAG 59.559 47.826 0.00 0.00 31.17 3.51
330 331 2.755655 ACATGTCTTAGTCGAGGTGAGG 59.244 50.000 0.00 0.00 0.00 3.86
331 332 1.174783 TGTCTTAGTCGAGGTGAGGC 58.825 55.000 0.00 0.00 0.00 4.70
332 333 0.456628 GTCTTAGTCGAGGTGAGGCC 59.543 60.000 0.00 0.00 37.58 5.19
333 334 1.030488 TCTTAGTCGAGGTGAGGCCG 61.030 60.000 0.00 0.00 43.70 6.13
334 335 1.001764 TTAGTCGAGGTGAGGCCGA 60.002 57.895 0.00 0.00 43.70 5.54
336 337 4.131088 GTCGAGGTGAGGCCGACC 62.131 72.222 17.12 17.12 44.67 4.79
340 341 4.371417 AGGTGAGGCCGACCCGTA 62.371 66.667 20.23 0.00 43.70 4.02
341 342 4.139234 GGTGAGGCCGACCCGTAC 62.139 72.222 14.56 0.28 39.21 3.67
342 343 4.487412 GTGAGGCCGACCCGTACG 62.487 72.222 8.69 8.69 39.21 3.67
360 361 2.174060 CGGTTACGTACGAACTACCC 57.826 55.000 24.41 11.06 34.81 3.69
361 362 1.737793 CGGTTACGTACGAACTACCCT 59.262 52.381 24.41 0.00 34.81 4.34
362 363 2.476185 CGGTTACGTACGAACTACCCTG 60.476 54.545 24.41 7.60 34.81 4.45
363 364 2.159379 GGTTACGTACGAACTACCCTGG 60.159 54.545 24.41 0.00 0.00 4.45
364 365 2.488153 GTTACGTACGAACTACCCTGGT 59.512 50.000 24.41 0.00 0.00 4.00
365 366 0.883833 ACGTACGAACTACCCTGGTG 59.116 55.000 24.41 0.00 0.00 4.17
366 367 0.171903 CGTACGAACTACCCTGGTGG 59.828 60.000 10.44 0.00 41.37 4.61
367 368 1.549203 GTACGAACTACCCTGGTGGA 58.451 55.000 6.70 0.00 38.00 4.02
368 369 2.105766 GTACGAACTACCCTGGTGGAT 58.894 52.381 6.70 0.00 38.00 3.41
369 370 1.192428 ACGAACTACCCTGGTGGATC 58.808 55.000 6.70 3.38 38.00 3.36
370 371 0.102481 CGAACTACCCTGGTGGATCG 59.898 60.000 15.63 15.63 42.70 3.69
371 372 1.481871 GAACTACCCTGGTGGATCGA 58.518 55.000 6.70 0.00 38.00 3.59
372 373 1.136500 GAACTACCCTGGTGGATCGAC 59.864 57.143 6.70 0.00 38.00 4.20
373 374 1.035932 ACTACCCTGGTGGATCGACG 61.036 60.000 6.70 0.00 38.00 5.12
374 375 1.735376 CTACCCTGGTGGATCGACGG 61.735 65.000 1.47 0.59 38.00 4.79
375 376 2.214122 TACCCTGGTGGATCGACGGA 62.214 60.000 7.17 0.00 38.00 4.69
376 377 2.355986 CCCTGGTGGATCGACGGAA 61.356 63.158 1.47 0.00 35.39 4.30
377 378 1.594833 CCTGGTGGATCGACGGAAA 59.405 57.895 1.47 0.00 34.57 3.13
378 379 0.036765 CCTGGTGGATCGACGGAAAA 60.037 55.000 1.47 0.00 34.57 2.29
379 380 1.076332 CTGGTGGATCGACGGAAAAC 58.924 55.000 1.47 0.00 0.00 2.43
380 381 0.320946 TGGTGGATCGACGGAAAACC 60.321 55.000 1.47 0.00 0.00 3.27
381 382 1.356527 GGTGGATCGACGGAAAACCG 61.357 60.000 7.12 7.12 39.31 4.44
382 383 1.079681 TGGATCGACGGAAAACCGG 60.080 57.895 13.05 0.00 37.53 5.28
383 384 1.079612 GGATCGACGGAAAACCGGT 60.080 57.895 0.00 0.00 37.53 5.28
384 385 0.173255 GGATCGACGGAAAACCGGTA 59.827 55.000 8.00 0.00 37.53 4.02
385 386 1.271876 GATCGACGGAAAACCGGTAC 58.728 55.000 8.00 2.18 37.53 3.34
386 387 0.108662 ATCGACGGAAAACCGGTACC 60.109 55.000 8.00 11.51 37.53 3.34
387 388 1.006337 CGACGGAAAACCGGTACCA 60.006 57.895 8.00 0.00 37.53 3.25
388 389 1.010419 CGACGGAAAACCGGTACCAG 61.010 60.000 8.00 2.40 37.53 4.00
389 390 1.293963 GACGGAAAACCGGTACCAGC 61.294 60.000 8.00 3.31 37.53 4.85
390 391 1.301874 CGGAAAACCGGTACCAGCA 60.302 57.895 8.00 0.00 0.00 4.41
391 392 0.675522 CGGAAAACCGGTACCAGCAT 60.676 55.000 8.00 0.00 0.00 3.79
392 393 0.808755 GGAAAACCGGTACCAGCATG 59.191 55.000 8.00 0.00 0.00 4.06
393 394 1.530323 GAAAACCGGTACCAGCATGT 58.470 50.000 8.00 0.00 0.00 3.21
394 395 1.883926 GAAAACCGGTACCAGCATGTT 59.116 47.619 8.00 3.99 0.00 2.71
395 396 1.989706 AAACCGGTACCAGCATGTTT 58.010 45.000 8.00 9.69 0.00 2.83
396 397 1.243902 AACCGGTACCAGCATGTTTG 58.756 50.000 8.00 0.00 0.00 2.93
397 398 0.608035 ACCGGTACCAGCATGTTTGG 60.608 55.000 4.49 14.52 41.60 3.28
398 399 0.322098 CCGGTACCAGCATGTTTGGA 60.322 55.000 20.77 6.10 39.08 3.53
399 400 1.529226 CGGTACCAGCATGTTTGGAA 58.471 50.000 20.77 0.00 39.08 3.53
400 401 1.199097 CGGTACCAGCATGTTTGGAAC 59.801 52.381 20.77 11.24 39.08 3.62
583 1322 5.450550 CCTGTACATTGTCTCGAGAGCATTA 60.451 44.000 17.22 3.85 0.00 1.90
661 1738 0.445829 GCTTCGGCAGCTTTCTCTTC 59.554 55.000 0.00 0.00 46.27 2.87
671 1748 2.371510 AGCTTTCTCTTCTGTTGCCTCT 59.628 45.455 0.00 0.00 0.00 3.69
672 1749 3.145286 GCTTTCTCTTCTGTTGCCTCTT 58.855 45.455 0.00 0.00 0.00 2.85
673 1750 3.567585 GCTTTCTCTTCTGTTGCCTCTTT 59.432 43.478 0.00 0.00 0.00 2.52
674 1751 4.037327 GCTTTCTCTTCTGTTGCCTCTTTT 59.963 41.667 0.00 0.00 0.00 2.27
675 1752 5.505173 TTTCTCTTCTGTTGCCTCTTTTG 57.495 39.130 0.00 0.00 0.00 2.44
969 3032 3.449018 CAGTAGCCACTCTAGTTCCACAT 59.551 47.826 0.00 0.00 30.46 3.21
2336 5877 4.725790 TGAGATCTCGATTGCTTCTTCA 57.274 40.909 17.76 0.00 0.00 3.02
2415 5956 0.037447 AAGCTCTCCTGCCTTGAACC 59.963 55.000 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.162921 GATTGCATCGATGGCCGTCG 62.163 60.000 36.40 36.40 42.74 5.12
2 3 0.882042 AGATTGCATCGATGGCCGTC 60.882 55.000 26.00 15.54 39.75 4.79
3 4 0.392706 TAGATTGCATCGATGGCCGT 59.607 50.000 26.00 0.00 39.75 5.68
4 5 0.792640 GTAGATTGCATCGATGGCCG 59.207 55.000 26.00 1.57 40.25 6.13
5 6 1.160137 GGTAGATTGCATCGATGGCC 58.840 55.000 26.00 11.45 0.00 5.36
6 7 1.160137 GGGTAGATTGCATCGATGGC 58.840 55.000 26.00 18.02 0.00 4.40
7 8 2.549064 TGGGTAGATTGCATCGATGG 57.451 50.000 26.00 8.82 0.00 3.51
8 9 3.470709 ACTTGGGTAGATTGCATCGATG 58.529 45.455 21.27 21.27 0.00 3.84
9 10 3.845781 ACTTGGGTAGATTGCATCGAT 57.154 42.857 0.00 0.00 0.00 3.59
10 11 3.181469 GGTACTTGGGTAGATTGCATCGA 60.181 47.826 0.00 0.00 0.00 3.59
11 12 3.131396 GGTACTTGGGTAGATTGCATCG 58.869 50.000 0.00 0.00 0.00 3.84
12 13 3.118038 TGGGTACTTGGGTAGATTGCATC 60.118 47.826 0.00 0.00 0.00 3.91
13 14 2.849943 TGGGTACTTGGGTAGATTGCAT 59.150 45.455 0.00 0.00 0.00 3.96
14 15 2.270858 TGGGTACTTGGGTAGATTGCA 58.729 47.619 0.00 0.00 0.00 4.08
15 16 3.014623 GTTGGGTACTTGGGTAGATTGC 58.985 50.000 0.00 0.00 0.00 3.56
16 17 3.009695 TGGTTGGGTACTTGGGTAGATTG 59.990 47.826 0.00 0.00 0.00 2.67
17 18 3.261962 TGGTTGGGTACTTGGGTAGATT 58.738 45.455 0.00 0.00 0.00 2.40
18 19 2.923908 TGGTTGGGTACTTGGGTAGAT 58.076 47.619 0.00 0.00 0.00 1.98
19 20 2.419457 TGGTTGGGTACTTGGGTAGA 57.581 50.000 0.00 0.00 0.00 2.59
20 21 3.732048 ATTGGTTGGGTACTTGGGTAG 57.268 47.619 0.00 0.00 0.00 3.18
21 22 3.245336 GGAATTGGTTGGGTACTTGGGTA 60.245 47.826 0.00 0.00 0.00 3.69
22 23 2.492010 GGAATTGGTTGGGTACTTGGGT 60.492 50.000 0.00 0.00 0.00 4.51
23 24 2.176045 GGAATTGGTTGGGTACTTGGG 58.824 52.381 0.00 0.00 0.00 4.12
24 25 1.816224 CGGAATTGGTTGGGTACTTGG 59.184 52.381 0.00 0.00 0.00 3.61
25 26 1.201414 GCGGAATTGGTTGGGTACTTG 59.799 52.381 0.00 0.00 0.00 3.16
26 27 1.541379 GCGGAATTGGTTGGGTACTT 58.459 50.000 0.00 0.00 0.00 2.24
27 28 0.675522 CGCGGAATTGGTTGGGTACT 60.676 55.000 0.00 0.00 0.00 2.73
28 29 1.798087 CGCGGAATTGGTTGGGTAC 59.202 57.895 0.00 0.00 0.00 3.34
29 30 2.041686 GCGCGGAATTGGTTGGGTA 61.042 57.895 8.83 0.00 0.00 3.69
30 31 3.370231 GCGCGGAATTGGTTGGGT 61.370 61.111 8.83 0.00 0.00 4.51
31 32 4.128388 GGCGCGGAATTGGTTGGG 62.128 66.667 8.83 0.00 0.00 4.12
32 33 4.474846 CGGCGCGGAATTGGTTGG 62.475 66.667 9.72 0.00 0.00 3.77
33 34 3.661025 GACGGCGCGGAATTGGTTG 62.661 63.158 22.76 0.00 0.00 3.77
34 35 3.428282 GACGGCGCGGAATTGGTT 61.428 61.111 22.76 0.00 0.00 3.67
57 58 2.473378 GCTCTTCGTCGTCGTCGA 59.527 61.111 10.46 10.46 44.12 4.20
58 59 2.573689 GGCTCTTCGTCGTCGTCG 60.574 66.667 5.50 5.50 38.33 5.12
59 60 1.512310 CTGGCTCTTCGTCGTCGTC 60.512 63.158 1.33 0.00 38.33 4.20
60 61 0.952497 TACTGGCTCTTCGTCGTCGT 60.952 55.000 1.33 0.00 38.33 4.34
61 62 0.247735 CTACTGGCTCTTCGTCGTCG 60.248 60.000 0.00 0.00 38.55 5.12
62 63 0.523757 GCTACTGGCTCTTCGTCGTC 60.524 60.000 0.00 0.00 38.06 4.20
63 64 1.507174 GCTACTGGCTCTTCGTCGT 59.493 57.895 0.00 0.00 38.06 4.34
64 65 1.226717 GGCTACTGGCTCTTCGTCG 60.227 63.158 0.00 0.00 41.46 5.12
65 66 1.142097 GGGCTACTGGCTCTTCGTC 59.858 63.158 0.00 0.00 38.65 4.20
66 67 2.359967 GGGGCTACTGGCTCTTCGT 61.360 63.158 0.00 0.00 42.10 3.85
67 68 2.501610 GGGGCTACTGGCTCTTCG 59.498 66.667 0.00 0.00 42.10 3.79
68 69 0.398664 TAGGGGGCTACTGGCTCTTC 60.399 60.000 0.00 0.00 42.10 2.87
69 70 0.691413 GTAGGGGGCTACTGGCTCTT 60.691 60.000 0.00 0.00 42.10 2.85
70 71 1.075151 GTAGGGGGCTACTGGCTCT 60.075 63.158 0.00 0.00 42.10 4.09
71 72 2.499827 CGTAGGGGGCTACTGGCTC 61.500 68.421 0.00 0.00 41.61 4.70
72 73 1.941403 TACGTAGGGGGCTACTGGCT 61.941 60.000 0.00 0.00 41.46 4.75
73 74 0.830866 ATACGTAGGGGGCTACTGGC 60.831 60.000 0.08 0.00 40.90 4.85
74 75 0.966920 CATACGTAGGGGGCTACTGG 59.033 60.000 0.08 0.00 0.00 4.00
75 76 1.991121 TCATACGTAGGGGGCTACTG 58.009 55.000 7.47 0.00 0.00 2.74
76 77 2.379226 AGATCATACGTAGGGGGCTACT 59.621 50.000 7.47 0.00 0.00 2.57
77 78 2.805194 AGATCATACGTAGGGGGCTAC 58.195 52.381 7.47 0.00 0.00 3.58
78 79 3.620719 CGTAGATCATACGTAGGGGGCTA 60.621 52.174 7.47 4.30 36.31 3.93
79 80 2.805194 GTAGATCATACGTAGGGGGCT 58.195 52.381 7.47 5.22 0.00 5.19
80 81 1.471684 CGTAGATCATACGTAGGGGGC 59.528 57.143 7.47 0.00 36.31 5.80
88 89 2.033151 TCGCTCACACGTAGATCATACG 60.033 50.000 17.54 17.54 45.44 3.06
89 90 3.604065 TCGCTCACACGTAGATCATAC 57.396 47.619 0.00 0.00 0.00 2.39
90 91 4.830826 AATCGCTCACACGTAGATCATA 57.169 40.909 0.00 0.00 0.00 2.15
91 92 3.717400 AATCGCTCACACGTAGATCAT 57.283 42.857 0.00 0.00 0.00 2.45
92 93 4.625972 TTAATCGCTCACACGTAGATCA 57.374 40.909 0.00 0.00 0.00 2.92
93 94 6.512177 AATTTAATCGCTCACACGTAGATC 57.488 37.500 0.00 0.00 0.00 2.75
94 95 7.997107 TTAATTTAATCGCTCACACGTAGAT 57.003 32.000 0.00 0.00 0.00 1.98
95 96 7.815398 TTTAATTTAATCGCTCACACGTAGA 57.185 32.000 0.00 0.00 0.00 2.59
96 97 8.166706 AGTTTTAATTTAATCGCTCACACGTAG 58.833 33.333 0.00 0.00 0.00 3.51
97 98 8.020861 AGTTTTAATTTAATCGCTCACACGTA 57.979 30.769 0.00 0.00 0.00 3.57
98 99 6.894828 AGTTTTAATTTAATCGCTCACACGT 58.105 32.000 0.00 0.00 0.00 4.49
99 100 7.775729 AAGTTTTAATTTAATCGCTCACACG 57.224 32.000 0.00 0.00 0.00 4.49
120 121 7.117812 CGATTGGTTAGACACAACTGATAAAGT 59.882 37.037 0.00 0.00 42.60 2.66
121 122 7.117812 ACGATTGGTTAGACACAACTGATAAAG 59.882 37.037 0.00 0.00 0.00 1.85
122 123 6.932400 ACGATTGGTTAGACACAACTGATAAA 59.068 34.615 0.00 0.00 0.00 1.40
123 124 6.460781 ACGATTGGTTAGACACAACTGATAA 58.539 36.000 0.00 0.00 0.00 1.75
124 125 6.032956 ACGATTGGTTAGACACAACTGATA 57.967 37.500 0.00 0.00 0.00 2.15
125 126 4.894784 ACGATTGGTTAGACACAACTGAT 58.105 39.130 0.00 0.00 0.00 2.90
126 127 4.330944 ACGATTGGTTAGACACAACTGA 57.669 40.909 0.00 0.00 0.00 3.41
127 128 4.772434 CAACGATTGGTTAGACACAACTG 58.228 43.478 0.00 0.00 36.49 3.16
128 129 3.250040 GCAACGATTGGTTAGACACAACT 59.750 43.478 0.00 0.00 36.49 3.16
129 130 3.002862 TGCAACGATTGGTTAGACACAAC 59.997 43.478 0.00 0.00 36.49 3.32
130 131 3.206964 TGCAACGATTGGTTAGACACAA 58.793 40.909 0.00 0.00 36.49 3.33
131 132 2.839975 TGCAACGATTGGTTAGACACA 58.160 42.857 0.00 0.00 36.49 3.72
132 133 3.250040 AGTTGCAACGATTGGTTAGACAC 59.750 43.478 23.21 0.00 36.49 3.67
133 134 3.472652 AGTTGCAACGATTGGTTAGACA 58.527 40.909 23.21 0.00 36.49 3.41
134 135 5.796350 ATAGTTGCAACGATTGGTTAGAC 57.204 39.130 23.21 0.00 36.49 2.59
135 136 6.636705 ACTATAGTTGCAACGATTGGTTAGA 58.363 36.000 26.80 9.20 36.49 2.10
136 137 6.903883 ACTATAGTTGCAACGATTGGTTAG 57.096 37.500 26.80 19.86 36.49 2.34
137 138 7.490079 CACTACTATAGTTGCAACGATTGGTTA 59.510 37.037 26.80 14.42 34.85 2.85
138 139 6.312918 CACTACTATAGTTGCAACGATTGGTT 59.687 38.462 26.80 14.11 36.63 3.67
139 140 5.810587 CACTACTATAGTTGCAACGATTGGT 59.189 40.000 26.80 24.53 36.76 3.67
140 141 5.276868 GCACTACTATAGTTGCAACGATTGG 60.277 44.000 26.80 21.16 36.76 3.16
141 142 5.520288 AGCACTACTATAGTTGCAACGATTG 59.480 40.000 26.80 25.49 36.76 2.67
142 143 5.661458 AGCACTACTATAGTTGCAACGATT 58.339 37.500 26.80 16.50 36.76 3.34
143 144 5.263968 AGCACTACTATAGTTGCAACGAT 57.736 39.130 25.33 25.33 36.76 3.73
144 145 4.713824 AGCACTACTATAGTTGCAACGA 57.286 40.909 24.53 19.19 36.76 3.85
145 146 6.439599 AGATAGCACTACTATAGTTGCAACG 58.560 40.000 24.53 11.89 41.87 4.10
146 147 8.543774 CAAAGATAGCACTACTATAGTTGCAAC 58.456 37.037 24.53 22.17 41.87 4.17
147 148 7.710907 CCAAAGATAGCACTACTATAGTTGCAA 59.289 37.037 24.53 0.00 41.87 4.08
148 149 7.210174 CCAAAGATAGCACTACTATAGTTGCA 58.790 38.462 24.53 14.47 41.87 4.08
149 150 6.647067 CCCAAAGATAGCACTACTATAGTTGC 59.353 42.308 18.07 18.07 41.87 4.17
150 151 6.647067 GCCCAAAGATAGCACTACTATAGTTG 59.353 42.308 11.40 11.79 41.87 3.16
151 152 6.555360 AGCCCAAAGATAGCACTACTATAGTT 59.445 38.462 11.40 0.00 41.87 2.24
152 153 6.078664 AGCCCAAAGATAGCACTACTATAGT 58.921 40.000 10.87 10.87 41.87 2.12
153 154 6.597832 AGCCCAAAGATAGCACTACTATAG 57.402 41.667 0.00 0.00 41.87 1.31
154 155 6.996180 AAGCCCAAAGATAGCACTACTATA 57.004 37.500 0.00 0.00 41.87 1.31
155 156 5.896073 AAGCCCAAAGATAGCACTACTAT 57.104 39.130 0.00 0.00 44.62 2.12
156 157 5.693769 AAAGCCCAAAGATAGCACTACTA 57.306 39.130 0.00 0.00 34.64 1.82
157 158 4.576330 AAAGCCCAAAGATAGCACTACT 57.424 40.909 0.00 0.00 0.00 2.57
158 159 5.048013 ACAAAAAGCCCAAAGATAGCACTAC 60.048 40.000 0.00 0.00 0.00 2.73
159 160 5.048083 CACAAAAAGCCCAAAGATAGCACTA 60.048 40.000 0.00 0.00 0.00 2.74
160 161 3.897505 ACAAAAAGCCCAAAGATAGCACT 59.102 39.130 0.00 0.00 0.00 4.40
161 162 3.989817 CACAAAAAGCCCAAAGATAGCAC 59.010 43.478 0.00 0.00 0.00 4.40
162 163 3.006752 CCACAAAAAGCCCAAAGATAGCA 59.993 43.478 0.00 0.00 0.00 3.49
163 164 3.006859 ACCACAAAAAGCCCAAAGATAGC 59.993 43.478 0.00 0.00 0.00 2.97
164 165 4.559153 CACCACAAAAAGCCCAAAGATAG 58.441 43.478 0.00 0.00 0.00 2.08
165 166 3.323403 CCACCACAAAAAGCCCAAAGATA 59.677 43.478 0.00 0.00 0.00 1.98
166 167 2.104622 CCACCACAAAAAGCCCAAAGAT 59.895 45.455 0.00 0.00 0.00 2.40
167 168 1.484240 CCACCACAAAAAGCCCAAAGA 59.516 47.619 0.00 0.00 0.00 2.52
168 169 1.952193 CCACCACAAAAAGCCCAAAG 58.048 50.000 0.00 0.00 0.00 2.77
169 170 0.107459 GCCACCACAAAAAGCCCAAA 60.107 50.000 0.00 0.00 0.00 3.28
170 171 1.524482 GCCACCACAAAAAGCCCAA 59.476 52.632 0.00 0.00 0.00 4.12
171 172 2.790791 CGCCACCACAAAAAGCCCA 61.791 57.895 0.00 0.00 0.00 5.36
172 173 2.028925 CGCCACCACAAAAAGCCC 59.971 61.111 0.00 0.00 0.00 5.19
173 174 2.661537 GCGCCACCACAAAAAGCC 60.662 61.111 0.00 0.00 0.00 4.35
174 175 2.661537 GGCGCCACCACAAAAAGC 60.662 61.111 24.80 0.00 38.86 3.51
175 176 1.007387 GAGGCGCCACCACAAAAAG 60.007 57.895 31.54 0.00 43.14 2.27
176 177 2.494530 GGAGGCGCCACCACAAAAA 61.495 57.895 34.66 0.00 43.14 1.94
177 178 2.909965 GGAGGCGCCACCACAAAA 60.910 61.111 34.66 0.00 43.14 2.44
178 179 2.058125 TAAGGAGGCGCCACCACAAA 62.058 55.000 39.03 21.06 43.14 2.83
179 180 2.463589 CTAAGGAGGCGCCACCACAA 62.464 60.000 39.03 24.24 43.14 3.33
180 181 2.925706 TAAGGAGGCGCCACCACA 60.926 61.111 39.03 25.51 43.14 4.17
181 182 2.125106 CTAAGGAGGCGCCACCAC 60.125 66.667 39.03 21.40 43.14 4.16
182 183 3.399181 CCTAAGGAGGCGCCACCA 61.399 66.667 39.03 22.17 43.14 4.17
191 192 1.041437 GGTCGGGATCACCTAAGGAG 58.959 60.000 0.00 0.00 36.97 3.69
192 193 0.754217 CGGTCGGGATCACCTAAGGA 60.754 60.000 0.00 0.00 36.97 3.36
193 194 1.740285 CGGTCGGGATCACCTAAGG 59.260 63.158 0.00 0.00 36.97 2.69
194 195 1.740285 CCGGTCGGGATCACCTAAG 59.260 63.158 0.74 0.00 38.47 2.18
195 196 2.428925 GCCGGTCGGGATCACCTAA 61.429 63.158 11.60 0.00 38.47 2.69
196 197 2.836360 GCCGGTCGGGATCACCTA 60.836 66.667 11.60 0.00 38.47 3.08
216 217 4.728110 AGTTAAACCCCGGCCGGC 62.728 66.667 39.46 22.84 0.00 6.13
217 218 1.180456 AAAAGTTAAACCCCGGCCGG 61.180 55.000 37.99 37.99 0.00 6.13
218 219 0.241749 GAAAAGTTAAACCCCGGCCG 59.758 55.000 21.04 21.04 0.00 6.13
219 220 1.330234 TGAAAAGTTAAACCCCGGCC 58.670 50.000 0.00 0.00 0.00 6.13
220 221 3.129813 CCTATGAAAAGTTAAACCCCGGC 59.870 47.826 0.00 0.00 0.00 6.13
221 222 4.591929 TCCTATGAAAAGTTAAACCCCGG 58.408 43.478 0.00 0.00 0.00 5.73
222 223 6.457799 CGATTCCTATGAAAAGTTAAACCCCG 60.458 42.308 0.00 0.00 33.32 5.73
223 224 6.600427 TCGATTCCTATGAAAAGTTAAACCCC 59.400 38.462 0.00 0.00 33.32 4.95
224 225 7.619964 TCGATTCCTATGAAAAGTTAAACCC 57.380 36.000 0.00 0.00 33.32 4.11
230 231 9.626045 GTTTGATTTCGATTCCTATGAAAAGTT 57.374 29.630 0.00 0.00 35.46 2.66
231 232 9.014297 AGTTTGATTTCGATTCCTATGAAAAGT 57.986 29.630 0.00 0.00 35.46 2.66
232 233 9.846248 AAGTTTGATTTCGATTCCTATGAAAAG 57.154 29.630 0.00 0.00 35.46 2.27
233 234 9.624697 CAAGTTTGATTTCGATTCCTATGAAAA 57.375 29.630 0.00 0.00 35.46 2.29
234 235 8.243426 CCAAGTTTGATTTCGATTCCTATGAAA 58.757 33.333 0.00 0.00 36.19 2.69
235 236 7.628366 GCCAAGTTTGATTTCGATTCCTATGAA 60.628 37.037 0.00 0.00 34.33 2.57
236 237 6.183360 GCCAAGTTTGATTTCGATTCCTATGA 60.183 38.462 0.00 0.00 0.00 2.15
237 238 5.973565 GCCAAGTTTGATTTCGATTCCTATG 59.026 40.000 0.00 0.00 0.00 2.23
238 239 5.652014 TGCCAAGTTTGATTTCGATTCCTAT 59.348 36.000 0.00 0.00 0.00 2.57
239 240 5.007034 TGCCAAGTTTGATTTCGATTCCTA 58.993 37.500 0.00 0.00 0.00 2.94
240 241 3.826157 TGCCAAGTTTGATTTCGATTCCT 59.174 39.130 0.00 0.00 0.00 3.36
241 242 4.168760 CTGCCAAGTTTGATTTCGATTCC 58.831 43.478 0.00 0.00 0.00 3.01
242 243 3.609807 GCTGCCAAGTTTGATTTCGATTC 59.390 43.478 0.00 0.00 0.00 2.52
243 244 3.578688 GCTGCCAAGTTTGATTTCGATT 58.421 40.909 0.00 0.00 0.00 3.34
244 245 2.094545 GGCTGCCAAGTTTGATTTCGAT 60.095 45.455 15.17 0.00 0.00 3.59
245 246 1.269448 GGCTGCCAAGTTTGATTTCGA 59.731 47.619 15.17 0.00 0.00 3.71
246 247 1.701704 GGCTGCCAAGTTTGATTTCG 58.298 50.000 15.17 0.00 0.00 3.46
247 248 1.269448 TCGGCTGCCAAGTTTGATTTC 59.731 47.619 20.29 0.00 0.00 2.17
248 249 1.327303 TCGGCTGCCAAGTTTGATTT 58.673 45.000 20.29 0.00 0.00 2.17
249 250 1.270550 CTTCGGCTGCCAAGTTTGATT 59.729 47.619 20.29 0.00 0.00 2.57
250 251 0.883833 CTTCGGCTGCCAAGTTTGAT 59.116 50.000 20.29 0.00 0.00 2.57
251 252 0.179032 TCTTCGGCTGCCAAGTTTGA 60.179 50.000 20.29 3.35 0.00 2.69
252 253 0.667993 TTCTTCGGCTGCCAAGTTTG 59.332 50.000 20.29 0.58 0.00 2.93
253 254 1.398692 TTTCTTCGGCTGCCAAGTTT 58.601 45.000 20.29 0.00 0.00 2.66
254 255 1.620822 ATTTCTTCGGCTGCCAAGTT 58.379 45.000 20.29 8.20 0.00 2.66
255 256 1.270550 CAATTTCTTCGGCTGCCAAGT 59.729 47.619 20.29 0.74 0.00 3.16
256 257 1.541147 TCAATTTCTTCGGCTGCCAAG 59.459 47.619 20.29 19.34 0.00 3.61
257 258 1.614996 TCAATTTCTTCGGCTGCCAA 58.385 45.000 20.29 11.01 0.00 4.52
258 259 1.473677 CATCAATTTCTTCGGCTGCCA 59.526 47.619 20.29 2.90 0.00 4.92
259 260 1.202336 CCATCAATTTCTTCGGCTGCC 60.202 52.381 9.11 9.11 0.00 4.85
260 261 1.745087 TCCATCAATTTCTTCGGCTGC 59.255 47.619 0.00 0.00 0.00 5.25
261 262 4.096833 TCAATCCATCAATTTCTTCGGCTG 59.903 41.667 0.00 0.00 0.00 4.85
262 263 4.272489 TCAATCCATCAATTTCTTCGGCT 58.728 39.130 0.00 0.00 0.00 5.52
263 264 4.637483 TCAATCCATCAATTTCTTCGGC 57.363 40.909 0.00 0.00 0.00 5.54
264 265 5.030295 CGTTCAATCCATCAATTTCTTCGG 58.970 41.667 0.00 0.00 0.00 4.30
265 266 5.030295 CCGTTCAATCCATCAATTTCTTCG 58.970 41.667 0.00 0.00 0.00 3.79
266 267 6.094048 TCTCCGTTCAATCCATCAATTTCTTC 59.906 38.462 0.00 0.00 0.00 2.87
267 268 5.945784 TCTCCGTTCAATCCATCAATTTCTT 59.054 36.000 0.00 0.00 0.00 2.52
268 269 5.500234 TCTCCGTTCAATCCATCAATTTCT 58.500 37.500 0.00 0.00 0.00 2.52
269 270 5.818136 TCTCCGTTCAATCCATCAATTTC 57.182 39.130 0.00 0.00 0.00 2.17
270 271 7.012704 CACTATCTCCGTTCAATCCATCAATTT 59.987 37.037 0.00 0.00 0.00 1.82
271 272 6.484643 CACTATCTCCGTTCAATCCATCAATT 59.515 38.462 0.00 0.00 0.00 2.32
272 273 5.994054 CACTATCTCCGTTCAATCCATCAAT 59.006 40.000 0.00 0.00 0.00 2.57
273 274 5.359756 CACTATCTCCGTTCAATCCATCAA 58.640 41.667 0.00 0.00 0.00 2.57
274 275 4.202253 CCACTATCTCCGTTCAATCCATCA 60.202 45.833 0.00 0.00 0.00 3.07
275 276 4.202264 ACCACTATCTCCGTTCAATCCATC 60.202 45.833 0.00 0.00 0.00 3.51
276 277 3.711704 ACCACTATCTCCGTTCAATCCAT 59.288 43.478 0.00 0.00 0.00 3.41
277 278 3.104512 ACCACTATCTCCGTTCAATCCA 58.895 45.455 0.00 0.00 0.00 3.41
278 279 3.821421 ACCACTATCTCCGTTCAATCC 57.179 47.619 0.00 0.00 0.00 3.01
279 280 5.517322 ACTACCACTATCTCCGTTCAATC 57.483 43.478 0.00 0.00 0.00 2.67
280 281 6.127793 AGTACTACCACTATCTCCGTTCAAT 58.872 40.000 0.00 0.00 0.00 2.57
281 282 5.503927 AGTACTACCACTATCTCCGTTCAA 58.496 41.667 0.00 0.00 0.00 2.69
282 283 5.108187 AGTACTACCACTATCTCCGTTCA 57.892 43.478 0.00 0.00 0.00 3.18
283 284 6.287525 ACTAGTACTACCACTATCTCCGTTC 58.712 44.000 0.00 0.00 30.78 3.95
284 285 6.126940 TGACTAGTACTACCACTATCTCCGTT 60.127 42.308 0.00 0.00 30.78 4.44
285 286 5.365025 TGACTAGTACTACCACTATCTCCGT 59.635 44.000 0.00 0.00 30.78 4.69
286 287 5.695816 GTGACTAGTACTACCACTATCTCCG 59.304 48.000 17.27 1.29 30.78 4.63
287 288 6.590068 TGTGACTAGTACTACCACTATCTCC 58.410 44.000 21.72 4.73 30.78 3.71
288 289 7.716123 ACATGTGACTAGTACTACCACTATCTC 59.284 40.741 21.72 7.73 30.78 2.75
289 290 7.575505 ACATGTGACTAGTACTACCACTATCT 58.424 38.462 21.72 9.19 30.78 1.98
290 291 7.716123 AGACATGTGACTAGTACTACCACTATC 59.284 40.741 21.72 17.43 30.78 2.08
291 292 7.575505 AGACATGTGACTAGTACTACCACTAT 58.424 38.462 21.72 14.67 30.78 2.12
292 293 6.955364 AGACATGTGACTAGTACTACCACTA 58.045 40.000 21.72 13.63 0.00 2.74
293 294 5.817784 AGACATGTGACTAGTACTACCACT 58.182 41.667 21.72 9.69 0.00 4.00
294 295 6.512342 AAGACATGTGACTAGTACTACCAC 57.488 41.667 1.15 17.53 0.00 4.16
295 296 7.400439 ACTAAGACATGTGACTAGTACTACCA 58.600 38.462 1.15 0.00 0.00 3.25
296 297 7.254387 CGACTAAGACATGTGACTAGTACTACC 60.254 44.444 1.15 0.00 0.00 3.18
297 298 7.490725 TCGACTAAGACATGTGACTAGTACTAC 59.509 40.741 1.15 0.00 0.00 2.73
298 299 7.550712 TCGACTAAGACATGTGACTAGTACTA 58.449 38.462 1.15 1.89 0.00 1.82
299 300 6.404708 TCGACTAAGACATGTGACTAGTACT 58.595 40.000 1.15 0.00 0.00 2.73
300 301 6.238157 CCTCGACTAAGACATGTGACTAGTAC 60.238 46.154 1.15 0.00 0.00 2.73
301 302 5.816258 CCTCGACTAAGACATGTGACTAGTA 59.184 44.000 1.15 0.00 0.00 1.82
302 303 4.636648 CCTCGACTAAGACATGTGACTAGT 59.363 45.833 1.15 6.94 0.00 2.57
303 304 4.636648 ACCTCGACTAAGACATGTGACTAG 59.363 45.833 1.15 3.49 0.00 2.57
304 305 4.395231 CACCTCGACTAAGACATGTGACTA 59.605 45.833 1.15 0.00 0.00 2.59
305 306 3.191581 CACCTCGACTAAGACATGTGACT 59.808 47.826 1.15 0.00 0.00 3.41
306 307 3.190744 TCACCTCGACTAAGACATGTGAC 59.809 47.826 1.15 0.00 0.00 3.67
307 308 3.418047 TCACCTCGACTAAGACATGTGA 58.582 45.455 1.15 0.00 0.00 3.58
308 309 3.428180 CCTCACCTCGACTAAGACATGTG 60.428 52.174 1.15 0.00 0.00 3.21
309 310 2.755655 CCTCACCTCGACTAAGACATGT 59.244 50.000 0.00 0.00 0.00 3.21
310 311 2.480416 GCCTCACCTCGACTAAGACATG 60.480 54.545 0.00 0.00 0.00 3.21
311 312 1.751924 GCCTCACCTCGACTAAGACAT 59.248 52.381 0.00 0.00 0.00 3.06
312 313 1.174783 GCCTCACCTCGACTAAGACA 58.825 55.000 0.00 0.00 0.00 3.41
313 314 0.456628 GGCCTCACCTCGACTAAGAC 59.543 60.000 0.00 0.00 34.51 3.01
314 315 1.030488 CGGCCTCACCTCGACTAAGA 61.030 60.000 0.00 0.00 35.61 2.10
315 316 1.030488 TCGGCCTCACCTCGACTAAG 61.030 60.000 0.00 0.00 35.61 2.18
316 317 1.001764 TCGGCCTCACCTCGACTAA 60.002 57.895 0.00 0.00 35.61 2.24
317 318 1.748122 GTCGGCCTCACCTCGACTA 60.748 63.158 0.00 0.00 46.49 2.59
318 319 3.063084 GTCGGCCTCACCTCGACT 61.063 66.667 0.00 0.00 46.49 4.18
323 324 4.371417 TACGGGTCGGCCTCACCT 62.371 66.667 17.89 4.62 35.61 4.00
324 325 4.139234 GTACGGGTCGGCCTCACC 62.139 72.222 5.77 11.59 34.45 4.02
325 326 4.487412 CGTACGGGTCGGCCTCAC 62.487 72.222 5.77 0.02 34.45 3.51
341 342 1.737793 AGGGTAGTTCGTACGTAACCG 59.262 52.381 16.05 0.00 40.83 4.44
342 343 2.159379 CCAGGGTAGTTCGTACGTAACC 60.159 54.545 16.05 12.51 31.59 2.85
343 344 2.488153 ACCAGGGTAGTTCGTACGTAAC 59.512 50.000 16.05 16.85 31.59 2.50
344 345 2.487762 CACCAGGGTAGTTCGTACGTAA 59.512 50.000 16.05 5.63 31.59 3.18
345 346 2.083774 CACCAGGGTAGTTCGTACGTA 58.916 52.381 16.05 1.99 31.59 3.57
346 347 0.883833 CACCAGGGTAGTTCGTACGT 59.116 55.000 16.05 0.00 31.59 3.57
347 348 0.171903 CCACCAGGGTAGTTCGTACG 59.828 60.000 9.53 9.53 31.59 3.67
348 349 1.549203 TCCACCAGGGTAGTTCGTAC 58.451 55.000 0.00 0.00 38.11 3.67
349 350 2.381911 GATCCACCAGGGTAGTTCGTA 58.618 52.381 0.00 0.00 38.11 3.43
350 351 1.192428 GATCCACCAGGGTAGTTCGT 58.808 55.000 0.00 0.00 38.11 3.85
351 352 0.102481 CGATCCACCAGGGTAGTTCG 59.898 60.000 3.63 3.63 38.11 3.95
352 353 1.136500 GTCGATCCACCAGGGTAGTTC 59.864 57.143 0.00 0.00 38.11 3.01
353 354 1.192428 GTCGATCCACCAGGGTAGTT 58.808 55.000 0.00 0.00 38.11 2.24
354 355 1.035932 CGTCGATCCACCAGGGTAGT 61.036 60.000 0.00 0.00 38.11 2.73
355 356 1.734137 CGTCGATCCACCAGGGTAG 59.266 63.158 0.00 0.00 38.11 3.18
356 357 1.755395 CCGTCGATCCACCAGGGTA 60.755 63.158 0.00 0.00 38.11 3.69
357 358 3.075005 CCGTCGATCCACCAGGGT 61.075 66.667 0.00 0.00 38.11 4.34
358 359 1.895020 TTTCCGTCGATCCACCAGGG 61.895 60.000 0.00 0.00 34.83 4.45
359 360 0.036765 TTTTCCGTCGATCCACCAGG 60.037 55.000 0.00 0.00 0.00 4.45
360 361 1.076332 GTTTTCCGTCGATCCACCAG 58.924 55.000 0.00 0.00 0.00 4.00
361 362 0.320946 GGTTTTCCGTCGATCCACCA 60.321 55.000 0.00 0.00 0.00 4.17
362 363 2.463592 GGTTTTCCGTCGATCCACC 58.536 57.895 0.00 0.00 0.00 4.61
373 374 0.808755 CATGCTGGTACCGGTTTTCC 59.191 55.000 21.95 14.23 0.00 3.13
374 375 1.530323 ACATGCTGGTACCGGTTTTC 58.470 50.000 21.95 3.74 0.00 2.29
375 376 1.989706 AACATGCTGGTACCGGTTTT 58.010 45.000 21.95 7.40 0.00 2.43
376 377 1.611491 CAAACATGCTGGTACCGGTTT 59.389 47.619 21.95 15.33 0.00 3.27
377 378 1.243902 CAAACATGCTGGTACCGGTT 58.756 50.000 21.95 10.59 0.00 4.44
378 379 0.608035 CCAAACATGCTGGTACCGGT 60.608 55.000 21.95 13.98 0.00 5.28
379 380 0.322098 TCCAAACATGCTGGTACCGG 60.322 55.000 17.09 17.09 35.30 5.28
380 381 1.199097 GTTCCAAACATGCTGGTACCG 59.801 52.381 7.57 3.32 35.30 4.02
381 382 2.030274 GTGTTCCAAACATGCTGGTACC 60.030 50.000 16.71 4.43 44.35 3.34
382 383 2.884639 AGTGTTCCAAACATGCTGGTAC 59.115 45.455 14.02 14.02 44.35 3.34
383 384 3.222173 AGTGTTCCAAACATGCTGGTA 57.778 42.857 12.85 2.59 44.35 3.25
384 385 2.071778 AGTGTTCCAAACATGCTGGT 57.928 45.000 12.85 0.00 44.35 4.00
385 386 2.095059 GCTAGTGTTCCAAACATGCTGG 60.095 50.000 7.93 7.93 44.35 4.85
386 387 2.413239 CGCTAGTGTTCCAAACATGCTG 60.413 50.000 0.00 0.00 44.35 4.41
387 388 1.806542 CGCTAGTGTTCCAAACATGCT 59.193 47.619 0.00 0.00 44.35 3.79
388 389 1.135689 CCGCTAGTGTTCCAAACATGC 60.136 52.381 1.99 1.68 44.35 4.06
389 390 1.468520 CCCGCTAGTGTTCCAAACATG 59.531 52.381 1.99 0.00 44.35 3.21
390 391 1.073284 ACCCGCTAGTGTTCCAAACAT 59.927 47.619 1.99 0.00 44.35 2.71
391 392 0.470766 ACCCGCTAGTGTTCCAAACA 59.529 50.000 1.99 0.00 39.52 2.83
392 393 2.289257 ACTACCCGCTAGTGTTCCAAAC 60.289 50.000 1.99 0.00 34.08 2.93
393 394 1.972795 ACTACCCGCTAGTGTTCCAAA 59.027 47.619 1.99 0.00 34.08 3.28
394 395 1.274167 CACTACCCGCTAGTGTTCCAA 59.726 52.381 1.99 0.00 45.30 3.53
395 396 0.892755 CACTACCCGCTAGTGTTCCA 59.107 55.000 1.99 0.00 45.30 3.53
396 397 3.735181 CACTACCCGCTAGTGTTCC 57.265 57.895 1.99 0.00 45.30 3.62
583 1322 6.062095 GCCATTAATGACCACAACTACCTAT 58.938 40.000 17.23 0.00 0.00 2.57
661 1738 4.093261 CCAACAAAACAAAAGAGGCAACAG 59.907 41.667 0.00 0.00 41.41 3.16
671 1748 3.685139 TCCAGCACCAACAAAACAAAA 57.315 38.095 0.00 0.00 0.00 2.44
672 1749 3.007398 ACTTCCAGCACCAACAAAACAAA 59.993 39.130 0.00 0.00 0.00 2.83
673 1750 2.564947 ACTTCCAGCACCAACAAAACAA 59.435 40.909 0.00 0.00 0.00 2.83
674 1751 2.165437 GACTTCCAGCACCAACAAAACA 59.835 45.455 0.00 0.00 0.00 2.83
675 1752 2.481276 GGACTTCCAGCACCAACAAAAC 60.481 50.000 0.00 0.00 35.64 2.43
745 1822 4.699522 ACGCGGGGTCAAAGGAGC 62.700 66.667 12.47 0.00 40.81 4.70
1246 3774 1.797211 GCAGTAGTAGCGGCGGATCT 61.797 60.000 9.78 0.00 0.00 2.75
2190 5730 7.394641 TCTCAAGAACTAGCTCTCTTTATGACA 59.605 37.037 0.00 0.00 29.29 3.58
2196 5736 6.350949 GGACATCTCAAGAACTAGCTCTCTTT 60.351 42.308 0.00 0.00 29.29 2.52
2336 5877 2.623416 GGCAAAGAAAGGTACAAGTGCT 59.377 45.455 0.00 0.00 0.00 4.40
2415 5956 2.568623 AGTTACCCACCAGCAAGAAG 57.431 50.000 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.