Multiple sequence alignment - TraesCS3B01G045200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G045200 chr3B 100.000 4667 0 0 1 4667 22830276 22834942 0.000000e+00 8619.0
1 TraesCS3B01G045200 chr3B 100.000 3495 0 0 4921 8415 22835196 22838690 0.000000e+00 6455.0
2 TraesCS3B01G045200 chr3B 87.174 1918 196 27 1017 2905 22674924 22676820 0.000000e+00 2134.0
3 TraesCS3B01G045200 chr3B 84.499 1658 237 9 6759 8415 22699278 22700916 0.000000e+00 1620.0
4 TraesCS3B01G045200 chr3B 83.147 1608 235 23 6813 8412 22804745 22806324 0.000000e+00 1435.0
5 TraesCS3B01G045200 chr3B 83.860 1456 223 10 6966 8415 22788351 22789800 0.000000e+00 1376.0
6 TraesCS3B01G045200 chr3B 80.000 1875 311 41 993 2824 22802683 22804536 0.000000e+00 1327.0
7 TraesCS3B01G045200 chr3B 81.009 1427 212 25 756 2157 22784490 22785882 0.000000e+00 1079.0
8 TraesCS3B01G045200 chr3B 85.714 434 38 15 349 772 22784056 22784475 3.610000e-118 436.0
9 TraesCS3B01G045200 chr3B 95.758 165 7 0 3028 3192 22672304 22672468 5.010000e-67 267.0
10 TraesCS3B01G045200 chr3B 89.524 105 6 2 579 680 22706290 22706392 2.470000e-25 128.0
11 TraesCS3B01G045200 chr3B 93.182 44 2 1 22 64 22706144 22706187 7.050000e-06 63.9
12 TraesCS3B01G045200 chr3A 94.354 3879 173 19 825 4667 20746075 20742207 0.000000e+00 5908.0
13 TraesCS3B01G045200 chr3A 93.925 2173 84 18 5287 7443 20741349 20739209 0.000000e+00 3238.0
14 TraesCS3B01G045200 chr3A 86.134 1601 196 18 6817 8413 20720209 20718631 0.000000e+00 1703.0
15 TraesCS3B01G045200 chr3A 95.070 994 40 2 7418 8410 20739032 20738047 0.000000e+00 1555.0
16 TraesCS3B01G045200 chr3A 79.123 1528 260 44 1017 2516 20727250 20725754 0.000000e+00 1000.0
17 TraesCS3B01G045200 chr3A 82.582 821 131 12 6751 7566 20735929 20735116 0.000000e+00 713.0
18 TraesCS3B01G045200 chr3A 79.568 925 167 14 998 1906 20966273 20965355 7.120000e-180 641.0
19 TraesCS3B01G045200 chr3A 81.098 820 131 17 7607 8415 20735114 20734308 1.190000e-177 634.0
20 TraesCS3B01G045200 chr3A 83.168 707 93 15 3371 4058 550728287 550728986 2.580000e-174 623.0
21 TraesCS3B01G045200 chr3A 79.383 907 160 20 998 1886 21066161 21065264 1.550000e-171 614.0
22 TraesCS3B01G045200 chr3A 94.751 381 16 4 4924 5302 20742040 20741662 2.620000e-164 590.0
23 TraesCS3B01G045200 chr3A 76.332 1145 223 28 1721 2827 20737255 20736121 3.410000e-158 569.0
24 TraesCS3B01G045200 chr3A 81.471 707 105 14 3373 4058 657319045 657319746 2.650000e-154 556.0
25 TraesCS3B01G045200 chr3A 80.796 427 47 18 349 766 20746477 20746077 1.370000e-77 302.0
26 TraesCS3B01G045200 chr3A 92.638 163 12 0 3119 3281 600921017 600920855 1.410000e-57 235.0
27 TraesCS3B01G045200 chr3A 92.754 69 4 1 122 190 20746569 20746502 1.930000e-16 99.0
28 TraesCS3B01G045200 chr3A 81.538 130 14 5 1091 1215 20961114 20960990 1.930000e-16 99.0
29 TraesCS3B01G045200 chr3D 92.104 1659 121 8 6759 8415 15920778 15922428 0.000000e+00 2329.0
30 TraesCS3B01G045200 chr3D 84.839 1926 224 40 1017 2905 15916601 15918495 0.000000e+00 1877.0
31 TraesCS3B01G045200 chr3D 79.723 937 168 16 998 1920 15331522 15332450 0.000000e+00 658.0
32 TraesCS3B01G045200 chr3D 86.325 351 27 12 5061 5391 15918905 15919254 6.210000e-96 363.0
33 TraesCS3B01G045200 chr3D 88.462 104 6 6 6679 6780 608805117 608805018 4.130000e-23 121.0
34 TraesCS3B01G045200 chr3D 82.727 110 19 0 4117 4226 374968270 374968379 1.930000e-16 99.0
35 TraesCS3B01G045200 chr1D 85.674 705 79 13 3373 4058 124917561 124916860 0.000000e+00 723.0
36 TraesCS3B01G045200 chr1D 83.937 635 79 7 3445 4058 342845794 342846426 3.380000e-163 586.0
37 TraesCS3B01G045200 chr1D 82.174 690 113 9 3373 4057 160532648 160531964 1.220000e-162 584.0
38 TraesCS3B01G045200 chr1D 81.250 688 111 15 3378 4056 1856785 1856107 2.670000e-149 540.0
39 TraesCS3B01G045200 chr1D 90.698 172 13 3 3116 3284 242557548 242557377 8.500000e-55 226.0
40 TraesCS3B01G045200 chr1D 91.954 87 5 2 6675 6760 47644742 47644827 4.130000e-23 121.0
41 TraesCS3B01G045200 chr1D 90.217 92 7 2 6670 6760 124334427 124334337 1.480000e-22 119.0
42 TraesCS3B01G045200 chr5D 80.400 1000 135 27 3379 4340 241956856 241955880 0.000000e+00 704.0
43 TraesCS3B01G045200 chr5D 93.407 91 2 3 6679 6768 382868492 382868405 1.910000e-26 132.0
44 TraesCS3B01G045200 chr5D 91.579 95 6 2 6675 6768 30547826 30547733 6.850000e-26 130.0
45 TraesCS3B01G045200 chr5D 92.391 92 5 2 6671 6761 240428037 240428127 6.850000e-26 130.0
46 TraesCS3B01G045200 chr5D 92.308 91 5 2 6673 6762 509559207 509559296 2.470000e-25 128.0
47 TraesCS3B01G045200 chr5D 92.222 90 5 2 6679 6767 18193791 18193879 8.870000e-25 126.0
48 TraesCS3B01G045200 chr5D 92.308 91 4 3 6672 6760 45483783 45483694 8.870000e-25 126.0
49 TraesCS3B01G045200 chr6D 83.501 697 86 15 3367 4058 26117711 26118383 2.580000e-174 623.0
50 TraesCS3B01G045200 chr6D 92.727 165 12 0 3118 3282 48458136 48457972 1.090000e-58 239.0
51 TraesCS3B01G045200 chr6D 91.765 170 13 1 3120 3289 145462624 145462456 1.410000e-57 235.0
52 TraesCS3B01G045200 chr6D 85.714 189 27 0 4116 4304 166795231 166795043 5.150000e-47 200.0
53 TraesCS3B01G045200 chr6D 92.135 89 5 2 6676 6763 168293755 168293842 3.190000e-24 124.0
54 TraesCS3B01G045200 chr6D 90.625 96 6 3 6676 6769 456406457 456406363 3.190000e-24 124.0
55 TraesCS3B01G045200 chr6D 90.323 93 5 3 6670 6760 85081778 85081868 1.480000e-22 119.0
56 TraesCS3B01G045200 chr6D 88.660 97 7 4 6665 6760 462762731 462762824 1.920000e-21 115.0
57 TraesCS3B01G045200 chr5B 82.419 711 92 19 3374 4055 170614487 170615193 2.620000e-164 590.0
58 TraesCS3B01G045200 chr5B 85.477 482 49 11 3373 3834 332965066 332964586 4.570000e-132 483.0
59 TraesCS3B01G045200 chr5B 96.460 113 4 0 241 353 208257087 208256975 4.010000e-43 187.0
60 TraesCS3B01G045200 chr5B 96.396 111 3 1 244 354 592070512 592070403 1.870000e-41 182.0
61 TraesCS3B01G045200 chr6A 81.178 696 112 16 3373 4056 94209390 94208702 7.430000e-150 542.0
62 TraesCS3B01G045200 chr6A 94.017 117 7 0 234 350 509054286 509054402 2.410000e-40 178.0
63 TraesCS3B01G045200 chr4B 80.435 690 122 12 3368 4051 14837905 14838587 1.620000e-141 514.0
64 TraesCS3B01G045200 chr4B 90.217 92 7 2 6673 6763 491017638 491017728 1.480000e-22 119.0
65 TraesCS3B01G045200 chr4B 88.776 98 8 3 6667 6763 525796151 525796056 5.340000e-22 117.0
66 TraesCS3B01G045200 chr4B 85.593 118 10 6 6672 6787 653488539 653488427 5.340000e-22 117.0
67 TraesCS3B01G045200 chr4B 87.379 103 8 4 6672 6771 507357777 507357677 6.900000e-21 113.0
68 TraesCS3B01G045200 chr7A 93.252 163 11 0 3120 3282 451519972 451519810 3.040000e-59 241.0
69 TraesCS3B01G045200 chr7A 83.803 142 21 1 4120 4261 510930549 510930688 5.300000e-27 134.0
70 TraesCS3B01G045200 chr7D 92.638 163 12 0 3120 3282 397554916 397555078 1.410000e-57 235.0
71 TraesCS3B01G045200 chr7D 90.476 105 5 4 6660 6760 519264527 519264630 5.300000e-27 134.0
72 TraesCS3B01G045200 chr4D 92.593 162 12 0 3120 3281 334164391 334164552 5.080000e-57 233.0
73 TraesCS3B01G045200 chr4D 94.017 117 7 0 234 350 261757894 261758010 2.410000e-40 178.0
74 TraesCS3B01G045200 chr4D 87.162 148 14 5 224 366 147273877 147274024 6.760000e-36 163.0
75 TraesCS3B01G045200 chr4D 92.222 90 5 2 6679 6767 371926895 371926807 8.870000e-25 126.0
76 TraesCS3B01G045200 chr4D 93.827 81 3 2 6679 6758 258897754 258897675 4.130000e-23 121.0
77 TraesCS3B01G045200 chr4D 91.860 86 5 2 6676 6760 479997578 479997662 1.480000e-22 119.0
78 TraesCS3B01G045200 chr4D 90.805 87 5 2 6676 6760 121405467 121405552 6.900000e-21 113.0
79 TraesCS3B01G045200 chr4D 90.000 90 6 3 6679 6767 403409611 403409524 6.900000e-21 113.0
80 TraesCS3B01G045200 chr4D 89.773 88 7 2 6675 6761 224838522 224838608 2.480000e-20 111.0
81 TraesCS3B01G045200 chr4D 89.011 91 7 3 6672 6761 23978733 23978645 8.930000e-20 110.0
82 TraesCS3B01G045200 chr4D 87.129 101 7 5 6663 6760 213708425 213708328 8.930000e-20 110.0
83 TraesCS3B01G045200 chr4D 84.483 116 11 6 6675 6787 501331691 501331802 3.210000e-19 108.0
84 TraesCS3B01G045200 chr2A 91.617 167 14 0 3118 3284 758586575 758586741 1.830000e-56 231.0
85 TraesCS3B01G045200 chr2A 94.262 122 6 1 235 356 762743635 762743755 1.440000e-42 185.0
86 TraesCS3B01G045200 chr5A 82.661 248 42 1 4116 4363 512792064 512791818 1.420000e-52 219.0
87 TraesCS3B01G045200 chr1B 83.913 230 35 2 4117 4346 147708091 147707864 1.420000e-52 219.0
88 TraesCS3B01G045200 chr1B 85.345 116 13 4 6647 6760 26636570 26636683 5.340000e-22 117.0
89 TraesCS3B01G045200 chr4A 95.575 113 5 0 244 356 467233728 467233840 1.870000e-41 182.0
90 TraesCS3B01G045200 chr4A 88.182 110 10 3 6670 6778 83770817 83770924 2.470000e-25 128.0
91 TraesCS3B01G045200 chr2B 93.443 122 5 3 231 350 712827985 712827865 2.410000e-40 178.0
92 TraesCS3B01G045200 chr2D 87.943 141 13 4 232 368 349931225 349931365 6.760000e-36 163.0
93 TraesCS3B01G045200 chr2D 94.118 85 3 2 6679 6762 436111420 436111337 2.470000e-25 128.0
94 TraesCS3B01G045200 chr6B 89.216 102 8 3 6676 6775 8403550 8403650 3.190000e-24 124.0
95 TraesCS3B01G045200 chr6B 84.884 86 10 3 1554 1639 707810797 707810879 5.410000e-12 84.2
96 TraesCS3B01G045200 chr1A 90.110 91 5 3 6679 6767 52458322 52458234 1.920000e-21 115.0
97 TraesCS3B01G045200 chr1A 90.909 88 4 3 6675 6760 571275454 571275539 1.920000e-21 115.0
98 TraesCS3B01G045200 chr1A 87.755 98 8 4 6667 6763 558377541 558377635 2.480000e-20 111.0
99 TraesCS3B01G045200 chrUn 88.000 100 6 4 6674 6771 75308471 75308376 6.900000e-21 113.0
100 TraesCS3B01G045200 chrUn 91.667 84 3 3 6679 6760 100223820 100223739 6.900000e-21 113.0
101 TraesCS3B01G045200 chrUn 88.000 100 6 4 6674 6771 242405209 242405304 6.900000e-21 113.0
102 TraesCS3B01G045200 chrUn 92.308 78 4 2 6689 6765 65138882 65138958 8.930000e-20 110.0
103 TraesCS3B01G045200 chrUn 89.655 87 6 3 6679 6763 197752476 197752391 3.210000e-19 108.0
104 TraesCS3B01G045200 chrUn 88.506 87 6 3 6676 6760 142658582 142658666 1.490000e-17 102.0
105 TraesCS3B01G045200 chrUn 87.640 89 7 4 6674 6760 94846970 94847056 5.370000e-17 100.0
106 TraesCS3B01G045200 chrUn 87.500 88 7 3 6675 6760 293415722 293415807 1.930000e-16 99.0
107 TraesCS3B01G045200 chrUn 87.500 88 7 3 6675 6760 294897370 294897285 1.930000e-16 99.0
108 TraesCS3B01G045200 chrUn 87.059 85 10 1 6676 6760 16761859 16761942 2.500000e-15 95.3
109 TraesCS3B01G045200 chr7B 82.524 103 17 1 4116 4218 663747384 663747485 1.160000e-13 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G045200 chr3B 22830276 22838690 8414 False 7537.000000 8619 100.000000 1 8415 2 chr3B.!!$F6 8414
1 TraesCS3B01G045200 chr3B 22699278 22700916 1638 False 1620.000000 1620 84.499000 6759 8415 1 chr3B.!!$F1 1656
2 TraesCS3B01G045200 chr3B 22802683 22806324 3641 False 1381.000000 1435 81.573500 993 8412 2 chr3B.!!$F5 7419
3 TraesCS3B01G045200 chr3B 22672304 22676820 4516 False 1200.500000 2134 91.466000 1017 3192 2 chr3B.!!$F2 2175
4 TraesCS3B01G045200 chr3B 22784056 22789800 5744 False 963.666667 1376 83.527667 349 8415 3 chr3B.!!$F4 8066
5 TraesCS3B01G045200 chr3A 20718631 20720209 1578 True 1703.000000 1703 86.134000 6817 8413 1 chr3A.!!$R1 1596
6 TraesCS3B01G045200 chr3A 20734308 20746569 12261 True 1512.000000 5908 87.962444 122 8415 9 chr3A.!!$R7 8293
7 TraesCS3B01G045200 chr3A 20725754 20727250 1496 True 1000.000000 1000 79.123000 1017 2516 1 chr3A.!!$R2 1499
8 TraesCS3B01G045200 chr3A 20965355 20966273 918 True 641.000000 641 79.568000 998 1906 1 chr3A.!!$R4 908
9 TraesCS3B01G045200 chr3A 550728287 550728986 699 False 623.000000 623 83.168000 3371 4058 1 chr3A.!!$F1 687
10 TraesCS3B01G045200 chr3A 21065264 21066161 897 True 614.000000 614 79.383000 998 1886 1 chr3A.!!$R5 888
11 TraesCS3B01G045200 chr3A 657319045 657319746 701 False 556.000000 556 81.471000 3373 4058 1 chr3A.!!$F2 685
12 TraesCS3B01G045200 chr3D 15916601 15922428 5827 False 1523.000000 2329 87.756000 1017 8415 3 chr3D.!!$F3 7398
13 TraesCS3B01G045200 chr3D 15331522 15332450 928 False 658.000000 658 79.723000 998 1920 1 chr3D.!!$F1 922
14 TraesCS3B01G045200 chr1D 124916860 124917561 701 True 723.000000 723 85.674000 3373 4058 1 chr1D.!!$R3 685
15 TraesCS3B01G045200 chr1D 342845794 342846426 632 False 586.000000 586 83.937000 3445 4058 1 chr1D.!!$F2 613
16 TraesCS3B01G045200 chr1D 160531964 160532648 684 True 584.000000 584 82.174000 3373 4057 1 chr1D.!!$R4 684
17 TraesCS3B01G045200 chr1D 1856107 1856785 678 True 540.000000 540 81.250000 3378 4056 1 chr1D.!!$R1 678
18 TraesCS3B01G045200 chr5D 241955880 241956856 976 True 704.000000 704 80.400000 3379 4340 1 chr5D.!!$R3 961
19 TraesCS3B01G045200 chr6D 26117711 26118383 672 False 623.000000 623 83.501000 3367 4058 1 chr6D.!!$F1 691
20 TraesCS3B01G045200 chr5B 170614487 170615193 706 False 590.000000 590 82.419000 3374 4055 1 chr5B.!!$F1 681
21 TraesCS3B01G045200 chr6A 94208702 94209390 688 True 542.000000 542 81.178000 3373 4056 1 chr6A.!!$R1 683
22 TraesCS3B01G045200 chr4B 14837905 14838587 682 False 514.000000 514 80.435000 3368 4051 1 chr4B.!!$F1 683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.035439 TCGGAGCCCAATTTGAGGAC 60.035 55.0 0.00 0.00 0.00 3.85 F
605 623 0.037046 TGCTCAGTCATCACGCACAT 60.037 50.0 0.00 0.00 0.00 3.21 F
807 827 0.039618 ATGGCTCCGATTTGTTGGGT 59.960 50.0 0.00 0.00 0.00 4.51 F
808 828 0.893270 TGGCTCCGATTTGTTGGGTG 60.893 55.0 0.00 0.00 0.00 4.61 F
925 945 1.024579 TTTTCTGCTTCGATCGCCCC 61.025 55.0 11.09 0.87 0.00 5.80 F
956 976 1.032014 GCCTTGCAACAAACCTCTCA 58.968 50.0 0.00 0.00 0.00 3.27 F
1171 2975 1.035385 CCGTTACCCCAATGCCCTTC 61.035 60.0 0.00 0.00 0.00 3.46 F
1752 3594 2.022625 TCCATCTCTCTCAACCCTCCAT 60.023 50.0 0.00 0.00 0.00 3.41 F
3432 5754 1.881591 TTAGCAACAACCCGGTACAC 58.118 50.0 0.00 0.00 0.00 2.90 F
3434 5756 0.109723 AGCAACAACCCGGTACACAT 59.890 50.0 0.00 0.00 0.00 3.21 F
4350 6749 0.179062 GCTCCAAGCATCGGATCTGT 60.179 55.0 0.42 0.00 41.89 3.41 F
5434 8181 0.446222 ACGGGATGCGTTTCAAATCG 59.554 50.0 0.00 0.00 0.00 3.34 F
6338 9796 0.392060 GGTGGGGGTGTTACATCGAC 60.392 60.0 0.00 0.00 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1084 2888 0.465705 GGATGGCATCGGAGAGTGAA 59.534 55.000 20.50 0.00 43.63 3.18 R
1522 3340 1.102978 ATAACATCAAGGGCGTTGGC 58.897 50.000 18.76 0.00 36.71 4.52 R
1707 3549 1.929860 TAGGACCCCCGAGTCGACAT 61.930 60.000 19.50 2.45 37.66 3.06 R
2105 3966 4.426416 TCGTAAAGACATGTGAATACCGG 58.574 43.478 1.15 0.00 0.00 5.28 R
2536 4788 5.841957 AGATTGCCAATTGAAGATGGTAC 57.158 39.130 7.12 0.00 39.00 3.34 R
2890 5155 6.684686 TGCAGTGTCGTTTAGTACTAGAAAT 58.315 36.000 2.23 0.00 0.00 2.17 R
3024 5334 2.556144 TACCATCTGGATGCATGCTC 57.444 50.000 20.33 13.33 37.49 4.26 R
3434 5756 0.801872 GTGTATTGTGATGGCGTGCA 59.198 50.000 0.00 0.00 0.00 4.57 R
5416 8163 0.446222 ACGATTTGAAACGCATCCCG 59.554 50.000 0.00 0.00 44.21 5.14 R
5434 8181 1.204941 ACTAGGAGCAACGACATCCAC 59.795 52.381 0.00 0.00 35.45 4.02 R
6265 9723 0.119358 AGTTAAGGGCCTCCACTCCT 59.881 55.000 6.46 0.00 34.83 3.69 R
6886 11047 1.151668 CAGAGAGCTGGTTGAAACGG 58.848 55.000 0.00 0.00 38.51 4.44 R
8249 16422 1.807814 ATAAGCCTCCCAACCGATCT 58.192 50.000 0.00 0.00 0.00 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.360249 GATGATTCGGAGCCCAATTTG 57.640 47.619 0.00 0.00 0.00 2.32
21 22 2.505650 TGATTCGGAGCCCAATTTGA 57.494 45.000 0.00 0.00 0.00 2.69
22 23 2.368439 TGATTCGGAGCCCAATTTGAG 58.632 47.619 0.00 0.00 0.00 3.02
23 24 1.678101 GATTCGGAGCCCAATTTGAGG 59.322 52.381 0.00 0.00 0.00 3.86
24 25 0.695924 TTCGGAGCCCAATTTGAGGA 59.304 50.000 0.00 0.00 0.00 3.71
25 26 0.035439 TCGGAGCCCAATTTGAGGAC 60.035 55.000 0.00 0.00 0.00 3.85
27 28 1.886222 CGGAGCCCAATTTGAGGACAA 60.886 52.381 0.00 0.00 0.00 3.18
28 29 2.460669 GGAGCCCAATTTGAGGACAAT 58.539 47.619 0.00 0.00 35.85 2.71
29 30 2.833943 GGAGCCCAATTTGAGGACAATT 59.166 45.455 0.00 0.00 35.85 2.32
30 31 4.023291 GGAGCCCAATTTGAGGACAATTA 58.977 43.478 0.00 0.00 35.85 1.40
31 32 4.098501 GGAGCCCAATTTGAGGACAATTAG 59.901 45.833 0.00 0.00 35.85 1.73
32 33 3.448660 AGCCCAATTTGAGGACAATTAGC 59.551 43.478 0.00 0.00 35.85 3.09
33 34 3.195396 GCCCAATTTGAGGACAATTAGCA 59.805 43.478 0.00 0.00 35.85 3.49
34 35 4.141869 GCCCAATTTGAGGACAATTAGCAT 60.142 41.667 0.00 0.00 35.85 3.79
35 36 5.627503 GCCCAATTTGAGGACAATTAGCATT 60.628 40.000 0.00 0.00 35.85 3.56
37 38 6.127253 CCCAATTTGAGGACAATTAGCATTCT 60.127 38.462 0.00 0.00 35.85 2.40
38 39 6.976925 CCAATTTGAGGACAATTAGCATTCTC 59.023 38.462 0.00 0.00 35.85 2.87
40 41 6.500684 TTTGAGGACAATTAGCATTCTCAC 57.499 37.500 0.00 0.00 35.85 3.51
43 44 4.521146 AGGACAATTAGCATTCTCACCAG 58.479 43.478 0.00 0.00 0.00 4.00
44 45 4.018960 AGGACAATTAGCATTCTCACCAGT 60.019 41.667 0.00 0.00 0.00 4.00
45 46 4.095483 GGACAATTAGCATTCTCACCAGTG 59.905 45.833 0.00 0.00 0.00 3.66
46 47 3.441572 ACAATTAGCATTCTCACCAGTGC 59.558 43.478 0.00 0.00 37.84 4.40
47 48 2.113860 TTAGCATTCTCACCAGTGCC 57.886 50.000 0.00 0.00 38.31 5.01
48 49 0.108186 TAGCATTCTCACCAGTGCCG 60.108 55.000 0.00 0.00 38.31 5.69
50 51 2.434884 ATTCTCACCAGTGCCGCG 60.435 61.111 0.00 0.00 0.00 6.46
52 53 2.731691 ATTCTCACCAGTGCCGCGTT 62.732 55.000 4.92 0.00 0.00 4.84
53 54 2.048597 CTCACCAGTGCCGCGTTA 60.049 61.111 4.92 0.00 0.00 3.18
54 55 2.356553 TCACCAGTGCCGCGTTAC 60.357 61.111 4.92 3.28 0.00 2.50
55 56 3.419759 CACCAGTGCCGCGTTACC 61.420 66.667 4.92 0.00 0.00 2.85
56 57 3.622826 ACCAGTGCCGCGTTACCT 61.623 61.111 4.92 0.00 0.00 3.08
57 58 3.118454 CCAGTGCCGCGTTACCTG 61.118 66.667 4.92 5.36 0.00 4.00
58 59 2.048597 CAGTGCCGCGTTACCTGA 60.049 61.111 4.92 0.00 0.00 3.86
59 60 1.447838 CAGTGCCGCGTTACCTGAT 60.448 57.895 4.92 0.00 0.00 2.90
60 61 1.019278 CAGTGCCGCGTTACCTGATT 61.019 55.000 4.92 0.00 0.00 2.57
61 62 1.019278 AGTGCCGCGTTACCTGATTG 61.019 55.000 4.92 0.00 0.00 2.67
63 64 2.395360 GCCGCGTTACCTGATTGCA 61.395 57.895 4.92 0.00 0.00 4.08
64 65 1.714899 GCCGCGTTACCTGATTGCAT 61.715 55.000 4.92 0.00 0.00 3.96
65 66 0.732571 CCGCGTTACCTGATTGCATT 59.267 50.000 4.92 0.00 0.00 3.56
66 67 1.531677 CCGCGTTACCTGATTGCATTG 60.532 52.381 4.92 0.00 0.00 2.82
67 68 1.548986 GCGTTACCTGATTGCATTGC 58.451 50.000 0.46 0.46 0.00 3.56
68 69 1.135431 GCGTTACCTGATTGCATTGCA 60.135 47.619 7.38 7.38 36.47 4.08
69 70 2.480073 GCGTTACCTGATTGCATTGCAT 60.480 45.455 12.95 2.72 38.76 3.96
70 71 3.365832 CGTTACCTGATTGCATTGCATC 58.634 45.455 12.95 12.16 38.76 3.91
71 72 3.065786 CGTTACCTGATTGCATTGCATCT 59.934 43.478 12.95 2.91 38.76 2.90
72 73 4.357142 GTTACCTGATTGCATTGCATCTG 58.643 43.478 12.95 14.22 38.76 2.90
73 74 2.453521 ACCTGATTGCATTGCATCTGT 58.546 42.857 12.95 10.31 38.76 3.41
74 75 3.623703 ACCTGATTGCATTGCATCTGTA 58.376 40.909 12.95 0.00 38.76 2.74
78 79 5.334957 CCTGATTGCATTGCATCTGTATCTC 60.335 44.000 12.95 1.12 38.76 2.75
79 80 5.374071 TGATTGCATTGCATCTGTATCTCT 58.626 37.500 12.95 0.00 38.76 3.10
80 81 6.527423 TGATTGCATTGCATCTGTATCTCTA 58.473 36.000 12.95 0.00 38.76 2.43
81 82 7.166167 TGATTGCATTGCATCTGTATCTCTAT 58.834 34.615 12.95 0.00 38.76 1.98
82 83 6.796705 TTGCATTGCATCTGTATCTCTATG 57.203 37.500 12.95 0.00 38.76 2.23
83 84 5.243207 TGCATTGCATCTGTATCTCTATGG 58.757 41.667 7.38 0.00 31.71 2.74
84 85 4.094590 GCATTGCATCTGTATCTCTATGGC 59.905 45.833 3.15 0.00 0.00 4.40
85 86 3.582714 TGCATCTGTATCTCTATGGCG 57.417 47.619 0.00 0.00 0.00 5.69
86 87 2.893489 TGCATCTGTATCTCTATGGCGT 59.107 45.455 0.00 0.00 0.00 5.68
87 88 3.057245 TGCATCTGTATCTCTATGGCGTC 60.057 47.826 0.00 0.00 0.00 5.19
89 90 4.731720 CATCTGTATCTCTATGGCGTCTG 58.268 47.826 0.00 0.00 0.00 3.51
90 91 2.554462 TCTGTATCTCTATGGCGTCTGC 59.446 50.000 0.00 0.00 41.71 4.26
100 101 4.100981 GCGTCTGCCTAGCTGAAG 57.899 61.111 0.00 5.33 38.17 3.02
101 102 1.513158 GCGTCTGCCTAGCTGAAGA 59.487 57.895 12.15 0.00 37.94 2.87
103 104 1.098869 CGTCTGCCTAGCTGAAGAGA 58.901 55.000 0.00 0.00 37.94 3.10
104 105 1.474478 CGTCTGCCTAGCTGAAGAGAA 59.526 52.381 0.00 0.00 37.94 2.87
105 106 2.479389 CGTCTGCCTAGCTGAAGAGAAG 60.479 54.545 0.00 0.00 37.94 2.85
106 107 2.495669 GTCTGCCTAGCTGAAGAGAAGT 59.504 50.000 0.00 0.00 38.17 3.01
107 108 2.495270 TCTGCCTAGCTGAAGAGAAGTG 59.505 50.000 0.00 0.00 33.82 3.16
108 109 2.233431 CTGCCTAGCTGAAGAGAAGTGT 59.767 50.000 0.00 0.00 0.00 3.55
109 110 2.634940 TGCCTAGCTGAAGAGAAGTGTT 59.365 45.455 0.00 0.00 0.00 3.32
110 111 3.258228 GCCTAGCTGAAGAGAAGTGTTC 58.742 50.000 0.00 0.00 0.00 3.18
111 112 3.855858 CCTAGCTGAAGAGAAGTGTTCC 58.144 50.000 0.00 0.00 0.00 3.62
114 115 3.936564 AGCTGAAGAGAAGTGTTCCATC 58.063 45.455 0.00 0.00 0.00 3.51
119 120 6.030548 TGAAGAGAAGTGTTCCATCAGTAG 57.969 41.667 0.00 0.00 0.00 2.57
173 174 3.247442 CTGCACACATAAACAATGCCTG 58.753 45.455 0.00 0.00 39.39 4.85
174 175 2.029200 TGCACACATAAACAATGCCTGG 60.029 45.455 0.00 0.00 39.39 4.45
186 187 1.830587 ATGCCTGGTCTTGCTCGACA 61.831 55.000 7.96 0.00 35.63 4.35
207 208 3.885724 GAGCTTTCCTCTCTTGCTAGT 57.114 47.619 0.00 0.00 37.60 2.57
208 209 4.200838 GAGCTTTCCTCTCTTGCTAGTT 57.799 45.455 0.00 0.00 37.60 2.24
209 210 3.932089 GAGCTTTCCTCTCTTGCTAGTTG 59.068 47.826 0.00 0.00 37.60 3.16
210 211 3.580458 AGCTTTCCTCTCTTGCTAGTTGA 59.420 43.478 0.00 0.00 31.71 3.18
212 213 4.562552 GCTTTCCTCTCTTGCTAGTTGAGT 60.563 45.833 14.90 0.00 0.00 3.41
215 216 2.999355 CCTCTCTTGCTAGTTGAGTTGC 59.001 50.000 14.90 0.00 0.00 4.17
216 217 3.306641 CCTCTCTTGCTAGTTGAGTTGCT 60.307 47.826 14.90 0.00 0.00 3.91
218 219 4.810790 TCTCTTGCTAGTTGAGTTGCTAC 58.189 43.478 0.00 0.00 0.00 3.58
219 220 4.280929 TCTCTTGCTAGTTGAGTTGCTACA 59.719 41.667 0.13 0.00 0.00 2.74
220 221 4.307432 TCTTGCTAGTTGAGTTGCTACAC 58.693 43.478 0.13 0.00 0.00 2.90
221 222 2.672714 TGCTAGTTGAGTTGCTACACG 58.327 47.619 0.13 0.00 0.00 4.49
223 224 3.253921 TGCTAGTTGAGTTGCTACACGTA 59.746 43.478 0.13 0.00 0.00 3.57
236 237 4.757657 TGCTACACGTATCAAACAACCAAT 59.242 37.500 0.00 0.00 0.00 3.16
245 246 6.523201 CGTATCAAACAACCAATCAAAGCTAC 59.477 38.462 0.00 0.00 0.00 3.58
246 247 6.655078 ATCAAACAACCAATCAAAGCTACT 57.345 33.333 0.00 0.00 0.00 2.57
247 248 6.072112 TCAAACAACCAATCAAAGCTACTC 57.928 37.500 0.00 0.00 0.00 2.59
248 249 5.009610 TCAAACAACCAATCAAAGCTACTCC 59.990 40.000 0.00 0.00 0.00 3.85
249 250 3.421844 ACAACCAATCAAAGCTACTCCC 58.578 45.455 0.00 0.00 0.00 4.30
250 251 3.074538 ACAACCAATCAAAGCTACTCCCT 59.925 43.478 0.00 0.00 0.00 4.20
251 252 3.636153 ACCAATCAAAGCTACTCCCTC 57.364 47.619 0.00 0.00 0.00 4.30
252 253 2.239907 ACCAATCAAAGCTACTCCCTCC 59.760 50.000 0.00 0.00 0.00 4.30
253 254 2.555199 CAATCAAAGCTACTCCCTCCG 58.445 52.381 0.00 0.00 0.00 4.63
256 257 1.549170 TCAAAGCTACTCCCTCCGTTC 59.451 52.381 0.00 0.00 0.00 3.95
257 258 0.531200 AAAGCTACTCCCTCCGTTCG 59.469 55.000 0.00 0.00 0.00 3.95
258 259 0.323178 AAGCTACTCCCTCCGTTCGA 60.323 55.000 0.00 0.00 0.00 3.71
259 260 0.323178 AGCTACTCCCTCCGTTCGAA 60.323 55.000 0.00 0.00 0.00 3.71
261 262 1.136500 GCTACTCCCTCCGTTCGAAAT 59.864 52.381 0.00 0.00 0.00 2.17
263 264 3.181483 GCTACTCCCTCCGTTCGAAATTA 60.181 47.826 0.00 0.00 0.00 1.40
264 265 3.242549 ACTCCCTCCGTTCGAAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
267 268 3.592059 TCCCTCCGTTCGAAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
268 269 3.007182 TCCCTCCGTTCGAAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
270 271 3.060363 CCTCCGTTCGAAATTACTTGTCG 59.940 47.826 0.00 0.00 36.12 4.35
271 272 2.409378 TCCGTTCGAAATTACTTGTCGC 59.591 45.455 0.00 0.00 34.80 5.19
273 274 3.395671 CGTTCGAAATTACTTGTCGCAG 58.604 45.455 0.00 0.00 34.80 5.18
274 275 3.120616 CGTTCGAAATTACTTGTCGCAGA 59.879 43.478 0.00 0.00 34.80 4.26
277 278 5.856126 TCGAAATTACTTGTCGCAGAAAT 57.144 34.783 0.00 0.00 39.69 2.17
278 279 5.617609 TCGAAATTACTTGTCGCAGAAATG 58.382 37.500 0.00 0.00 39.69 2.32
279 280 4.788100 CGAAATTACTTGTCGCAGAAATGG 59.212 41.667 0.00 0.00 39.69 3.16
280 281 5.390461 CGAAATTACTTGTCGCAGAAATGGA 60.390 40.000 0.00 0.00 39.69 3.41
282 283 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
285 286 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
286 287 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
287 288 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
288 289 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
289 290 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
290 291 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
291 292 6.183360 TGTCGCAGAAATGGATGTATCTAGAA 60.183 38.462 0.00 0.00 39.69 2.10
292 293 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
293 294 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
294 295 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
296 297 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
320 321 9.490379 AAAATACGTCTAGATACATCCATTTCC 57.510 33.333 0.00 0.00 0.00 3.13
321 322 5.122512 ACGTCTAGATACATCCATTTCCG 57.877 43.478 0.00 0.00 0.00 4.30
322 323 4.825634 ACGTCTAGATACATCCATTTCCGA 59.174 41.667 0.00 0.00 0.00 4.55
323 324 5.048643 ACGTCTAGATACATCCATTTCCGAG 60.049 44.000 0.00 0.00 0.00 4.63
324 325 5.181433 CGTCTAGATACATCCATTTCCGAGA 59.819 44.000 0.00 0.00 0.00 4.04
325 326 6.383415 GTCTAGATACATCCATTTCCGAGAC 58.617 44.000 0.00 0.00 0.00 3.36
326 327 6.016192 GTCTAGATACATCCATTTCCGAGACA 60.016 42.308 0.00 0.00 0.00 3.41
327 328 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
328 329 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
329 330 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
330 331 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
331 332 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
332 333 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
335 336 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
336 337 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
337 338 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
338 339 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
339 340 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
340 341 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
341 342 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
343 344 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
344 345 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
345 346 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
346 347 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
418 419 2.029020 TGCTTGCGAGTCACAATCTAGT 60.029 45.455 2.14 0.00 0.00 2.57
419 420 2.346847 GCTTGCGAGTCACAATCTAGTG 59.653 50.000 2.14 0.00 40.85 2.74
420 421 1.996292 TGCGAGTCACAATCTAGTGC 58.004 50.000 0.00 0.00 39.35 4.40
423 424 1.923204 CGAGTCACAATCTAGTGCTGC 59.077 52.381 0.00 0.00 39.35 5.25
424 425 2.416566 CGAGTCACAATCTAGTGCTGCT 60.417 50.000 0.00 0.00 39.35 4.24
425 426 2.928757 GAGTCACAATCTAGTGCTGCTG 59.071 50.000 0.00 0.00 39.35 4.41
426 427 2.005451 GTCACAATCTAGTGCTGCTGG 58.995 52.381 0.00 0.00 39.35 4.85
443 448 4.847367 GGGCTGGGCTGGGATTGG 62.847 72.222 0.00 0.00 0.00 3.16
477 482 3.123804 CGTCCTCCTCCATACAATTTCG 58.876 50.000 0.00 0.00 0.00 3.46
485 490 5.991606 TCCTCCATACAATTTCGCTAGAATG 59.008 40.000 0.00 0.00 36.09 2.67
516 521 6.484643 GCTACAGAGAAAATTGGCTGATATGA 59.515 38.462 0.00 0.00 32.86 2.15
525 535 5.563876 ATTGGCTGATATGACTGTCTGAT 57.436 39.130 9.51 2.19 0.00 2.90
529 539 4.321899 GGCTGATATGACTGTCTGATCCTC 60.322 50.000 9.51 6.12 0.00 3.71
553 563 4.170449 TGGCATATATGGTCTCTGTCCAT 58.830 43.478 14.51 3.02 46.00 3.41
555 565 5.181748 GGCATATATGGTCTCTGTCCATTC 58.818 45.833 14.51 0.00 42.24 2.67
560 570 3.319137 TGGTCTCTGTCCATTCGAAAG 57.681 47.619 0.00 0.00 0.00 2.62
561 571 2.632996 TGGTCTCTGTCCATTCGAAAGT 59.367 45.455 0.00 0.00 0.00 2.66
562 572 3.830178 TGGTCTCTGTCCATTCGAAAGTA 59.170 43.478 0.00 0.00 0.00 2.24
563 573 4.174762 GGTCTCTGTCCATTCGAAAGTAC 58.825 47.826 0.00 0.00 0.00 2.73
566 576 6.183360 GGTCTCTGTCCATTCGAAAGTACTAT 60.183 42.308 0.00 0.00 0.00 2.12
597 607 2.478134 GTCACAGTTGTGCTCAGTCATC 59.522 50.000 7.38 0.00 45.25 2.92
600 610 1.458445 CAGTTGTGCTCAGTCATCACG 59.542 52.381 0.00 0.00 33.69 4.35
601 611 0.164647 GTTGTGCTCAGTCATCACGC 59.835 55.000 0.00 0.00 33.69 5.34
602 612 0.249826 TTGTGCTCAGTCATCACGCA 60.250 50.000 0.00 0.00 33.69 5.24
605 623 0.037046 TGCTCAGTCATCACGCACAT 60.037 50.000 0.00 0.00 0.00 3.21
610 628 5.048083 TGCTCAGTCATCACGCACATATATA 60.048 40.000 0.00 0.00 0.00 0.86
640 658 0.593128 TGCTTCGCAGGAGCTTTTTC 59.407 50.000 9.68 0.00 39.10 2.29
662 681 5.000591 TCTCTTGAACCGTTGCATTATTGA 58.999 37.500 0.00 0.00 0.00 2.57
670 689 7.335673 TGAACCGTTGCATTATTGAGAAGATTA 59.664 33.333 0.00 0.00 0.00 1.75
684 703 8.415950 TTGAGAAGATTAGAGTCTTGAGTCTT 57.584 34.615 12.51 0.00 38.51 3.01
685 704 7.825681 TGAGAAGATTAGAGTCTTGAGTCTTG 58.174 38.462 12.51 0.00 38.51 3.02
689 708 5.420739 AGATTAGAGTCTTGAGTCTTGACCC 59.579 44.000 12.51 2.27 0.00 4.46
700 719 1.066787 GTCTTGACCCTAGACCAGTGC 60.067 57.143 0.00 0.00 36.79 4.40
713 732 3.129287 AGACCAGTGCAAAACTTCAAGTG 59.871 43.478 0.00 0.00 36.83 3.16
750 770 5.959618 AAAACTATTTCTGAACCCCTTCG 57.040 39.130 0.00 0.00 0.00 3.79
759 779 4.975631 TCTGAACCCCTTCGTTTTATTCA 58.024 39.130 0.00 0.00 0.00 2.57
772 792 8.736751 TTCGTTTTATTCAGCTTTGTTTATCC 57.263 30.769 0.00 0.00 0.00 2.59
774 794 8.234546 TCGTTTTATTCAGCTTTGTTTATCCTC 58.765 33.333 0.00 0.00 0.00 3.71
779 799 7.856145 ATTCAGCTTTGTTTATCCTCTGTAG 57.144 36.000 0.00 0.00 0.00 2.74
782 802 7.450074 TCAGCTTTGTTTATCCTCTGTAGAAA 58.550 34.615 0.00 0.00 0.00 2.52
783 803 7.604164 TCAGCTTTGTTTATCCTCTGTAGAAAG 59.396 37.037 0.00 0.00 0.00 2.62
784 804 6.372937 AGCTTTGTTTATCCTCTGTAGAAAGC 59.627 38.462 0.00 0.00 41.86 3.51
785 805 6.403746 GCTTTGTTTATCCTCTGTAGAAAGCC 60.404 42.308 0.00 0.00 37.75 4.35
787 807 4.120589 GTTTATCCTCTGTAGAAAGCCCG 58.879 47.826 0.00 0.00 0.00 6.13
788 808 2.160721 ATCCTCTGTAGAAAGCCCGA 57.839 50.000 0.00 0.00 0.00 5.14
789 809 2.160721 TCCTCTGTAGAAAGCCCGAT 57.839 50.000 0.00 0.00 0.00 4.18
790 810 1.757118 TCCTCTGTAGAAAGCCCGATG 59.243 52.381 0.00 0.00 0.00 3.84
791 811 1.202580 CCTCTGTAGAAAGCCCGATGG 60.203 57.143 0.00 0.00 0.00 3.51
801 821 3.736483 CCCGATGGCTCCGATTTG 58.264 61.111 0.98 0.00 0.00 2.32
804 824 0.378257 CCGATGGCTCCGATTTGTTG 59.622 55.000 0.98 0.00 0.00 3.33
805 825 0.378257 CGATGGCTCCGATTTGTTGG 59.622 55.000 0.00 0.00 0.00 3.77
806 826 0.740737 GATGGCTCCGATTTGTTGGG 59.259 55.000 0.00 0.00 0.00 4.12
807 827 0.039618 ATGGCTCCGATTTGTTGGGT 59.960 50.000 0.00 0.00 0.00 4.51
808 828 0.893270 TGGCTCCGATTTGTTGGGTG 60.893 55.000 0.00 0.00 0.00 4.61
809 829 1.212751 GCTCCGATTTGTTGGGTGC 59.787 57.895 0.00 0.00 35.90 5.01
810 830 1.244019 GCTCCGATTTGTTGGGTGCT 61.244 55.000 0.00 0.00 39.02 4.40
811 831 1.948611 GCTCCGATTTGTTGGGTGCTA 60.949 52.381 0.00 0.00 39.02 3.49
812 832 1.737793 CTCCGATTTGTTGGGTGCTAC 59.262 52.381 0.00 0.00 0.00 3.58
813 833 1.349688 TCCGATTTGTTGGGTGCTACT 59.650 47.619 0.00 0.00 0.00 2.57
814 834 2.568062 TCCGATTTGTTGGGTGCTACTA 59.432 45.455 0.00 0.00 0.00 1.82
815 835 2.676342 CCGATTTGTTGGGTGCTACTAC 59.324 50.000 0.00 0.00 0.00 2.73
816 836 3.596214 CGATTTGTTGGGTGCTACTACT 58.404 45.455 0.00 0.00 0.00 2.57
817 837 3.617263 CGATTTGTTGGGTGCTACTACTC 59.383 47.826 0.00 0.00 0.00 2.59
818 838 4.620803 CGATTTGTTGGGTGCTACTACTCT 60.621 45.833 0.00 0.00 0.00 3.24
819 839 4.699925 TTTGTTGGGTGCTACTACTCTT 57.300 40.909 0.00 0.00 0.00 2.85
820 840 4.699925 TTGTTGGGTGCTACTACTCTTT 57.300 40.909 0.00 0.00 0.00 2.52
821 841 4.699925 TGTTGGGTGCTACTACTCTTTT 57.300 40.909 0.00 0.00 0.00 2.27
822 842 4.638304 TGTTGGGTGCTACTACTCTTTTC 58.362 43.478 0.00 0.00 0.00 2.29
830 850 6.071503 GGTGCTACTACTCTTTTCTTGGAGTA 60.072 42.308 0.00 0.00 42.06 2.59
839 859 4.286291 TCTTTTCTTGGAGTACTTCCCTCC 59.714 45.833 0.00 0.00 46.19 4.30
847 867 2.765135 GAGTACTTCCCTCCTTACCCAC 59.235 54.545 0.00 0.00 0.00 4.61
848 868 2.113052 AGTACTTCCCTCCTTACCCACA 59.887 50.000 0.00 0.00 0.00 4.17
861 881 2.187946 CCACATCCAGCCGTCCTC 59.812 66.667 0.00 0.00 0.00 3.71
876 896 5.071250 AGCCGTCCTCACCATTACATTATTA 59.929 40.000 0.00 0.00 0.00 0.98
902 922 3.038280 TGAAGAGTTCAGTCTTGACCCA 58.962 45.455 1.43 0.00 36.89 4.51
907 927 4.349342 AGAGTTCAGTCTTGACCCATTCTT 59.651 41.667 0.00 0.00 31.71 2.52
925 945 1.024579 TTTTCTGCTTCGATCGCCCC 61.025 55.000 11.09 0.87 0.00 5.80
949 969 6.454795 CCTCTATAAAAAGCCTTGCAACAAA 58.545 36.000 0.00 0.00 0.00 2.83
953 973 2.602257 AAAGCCTTGCAACAAACCTC 57.398 45.000 0.00 0.00 0.00 3.85
954 974 1.780503 AAGCCTTGCAACAAACCTCT 58.219 45.000 0.00 0.00 0.00 3.69
956 976 1.032014 GCCTTGCAACAAACCTCTCA 58.968 50.000 0.00 0.00 0.00 3.27
959 979 3.709987 CCTTGCAACAAACCTCTCAAAG 58.290 45.455 0.00 0.00 0.00 2.77
960 980 3.381272 CCTTGCAACAAACCTCTCAAAGA 59.619 43.478 0.00 0.00 0.00 2.52
961 981 4.498682 CCTTGCAACAAACCTCTCAAAGAG 60.499 45.833 0.00 0.00 41.96 2.85
965 994 5.360714 TGCAACAAACCTCTCAAAGAGAAAT 59.639 36.000 5.54 0.00 45.07 2.17
978 1007 9.052759 TCTCAAAGAGAAATAAACAAGTACACC 57.947 33.333 0.00 0.00 35.59 4.16
1032 2637 2.756760 CGGTTGGGTGCTACTACTCTTA 59.243 50.000 0.00 0.00 0.00 2.10
1045 2843 4.561105 ACTACTCTTACTTGCAGTGCTTC 58.439 43.478 17.60 0.00 0.00 3.86
1119 2923 1.495579 ATCCAGACCAGGCTGCAACT 61.496 55.000 9.56 4.77 34.56 3.16
1171 2975 1.035385 CCGTTACCCCAATGCCCTTC 61.035 60.000 0.00 0.00 0.00 3.46
1314 3123 2.224597 TGCAATCTTCAAGCTCACCTCA 60.225 45.455 0.00 0.00 0.00 3.86
1522 3340 6.206048 TGATTCTGCTGTTTATGGCTATGATG 59.794 38.462 0.00 0.00 0.00 3.07
1619 3458 3.265737 AGTCTGAGAGAGCTCTACCTTGA 59.734 47.826 18.25 10.02 40.61 3.02
1620 3459 4.013728 GTCTGAGAGAGCTCTACCTTGAA 58.986 47.826 18.25 0.31 40.61 2.69
1621 3460 4.096382 GTCTGAGAGAGCTCTACCTTGAAG 59.904 50.000 18.25 9.68 40.61 3.02
1707 3549 2.233922 CCGAGTTCTTAGCTTGAGGGAA 59.766 50.000 0.00 0.00 0.00 3.97
1752 3594 2.022625 TCCATCTCTCTCAACCCTCCAT 60.023 50.000 0.00 0.00 0.00 3.41
1786 3628 6.826231 TGTGATTAACCTTCAAGACAACTTCA 59.174 34.615 0.00 0.00 33.70 3.02
2028 3880 6.348498 CAATTTCTCCTTTGGAAAAACAGGT 58.652 36.000 0.00 0.00 36.47 4.00
2065 3917 4.101942 CAAGTCTTTGCAAACGTTAAGCA 58.898 39.130 20.37 20.37 36.32 3.91
2079 3931 6.932901 ACGTTAAGCATTGATGTGAATTTG 57.067 33.333 0.00 0.00 32.12 2.32
2105 3966 6.455360 TTTTATGGAGCATCAATCTTCACC 57.545 37.500 0.00 0.00 36.25 4.02
2418 4646 4.637534 TCTGCAATTGGTAATCTCAGAAGC 59.362 41.667 7.72 0.00 30.99 3.86
2536 4788 2.504367 CTCATGGTTTATTAGGGCCGG 58.496 52.381 0.00 0.00 0.00 6.13
3142 5462 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
3244 5564 9.585099 ACGTCCGTATGTAGTTTATATTGAAAA 57.415 29.630 0.00 0.00 0.00 2.29
3432 5754 1.881591 TTAGCAACAACCCGGTACAC 58.118 50.000 0.00 0.00 0.00 2.90
3434 5756 0.109723 AGCAACAACCCGGTACACAT 59.890 50.000 0.00 0.00 0.00 3.21
3705 6077 1.595993 CGAGAAGGGGACGAGCTTCA 61.596 60.000 0.00 0.00 28.75 3.02
3852 6224 3.320879 CTCTGCCCATGAGCACCGT 62.321 63.158 0.00 0.00 38.00 4.83
4004 6380 0.669077 CGAGATCCAACTAGGTCGGG 59.331 60.000 0.00 0.00 39.02 5.14
4083 6463 0.255890 GGCTCACCACCACCATACAT 59.744 55.000 0.00 0.00 35.26 2.29
4179 6578 1.610624 GCACCCGGATGACAAGAAGAA 60.611 52.381 0.00 0.00 0.00 2.52
4190 6589 3.832490 TGACAAGAAGAAGGATCGAAGGA 59.168 43.478 0.00 0.00 0.00 3.36
4222 6621 1.299468 CTACAGACGAGCCGATGCC 60.299 63.158 1.50 0.00 38.69 4.40
4224 6623 4.193334 CAGACGAGCCGATGCCGA 62.193 66.667 1.50 0.00 38.69 5.54
4264 6663 2.743928 CCGACCTGCCAAGCTGTC 60.744 66.667 0.00 0.00 0.00 3.51
4278 6677 1.136984 CTGTCGTCGAGCTACCCAC 59.863 63.158 0.00 0.00 0.00 4.61
4284 6683 3.129502 CGAGCTACCCACGACCGA 61.130 66.667 0.00 0.00 0.00 4.69
4321 6720 2.906897 CACTGCCAAACCCACGCT 60.907 61.111 0.00 0.00 0.00 5.07
4350 6749 0.179062 GCTCCAAGCATCGGATCTGT 60.179 55.000 0.42 0.00 41.89 3.41
4356 6755 2.355126 CATCGGATCTGTCGGGCG 60.355 66.667 0.42 0.00 0.00 6.13
4372 6771 3.893763 CGCGCTCCTCCGTCATCT 61.894 66.667 5.56 0.00 0.00 2.90
4381 6780 3.639094 CTCCTCCGTCATCTAGATTTGGT 59.361 47.826 1.33 0.00 0.00 3.67
4441 6840 1.136828 AGCCCAGTAACCAACAGACA 58.863 50.000 0.00 0.00 0.00 3.41
4484 6883 4.111016 TCGCCACCGACTACTGCG 62.111 66.667 0.00 0.00 46.09 5.18
4580 6979 1.378911 TAGCCGCCGTTGTCTCCTA 60.379 57.895 0.00 0.00 0.00 2.94
4594 6993 1.000771 TCCTAGCCAGACGCACTCT 60.001 57.895 0.00 0.00 41.38 3.24
4953 7352 4.503314 GGTTACCCCCGTCGCTCG 62.503 72.222 0.00 0.00 39.52 5.03
4976 7375 2.754658 GCGAGGGAAGGACGAGGA 60.755 66.667 0.00 0.00 0.00 3.71
5065 7464 7.919690 TCTTCCTCGTATTTTCATGCTATTTG 58.080 34.615 0.00 0.00 0.00 2.32
5158 7557 2.023673 TGGCAGCCGGAGAAAATTATG 58.976 47.619 5.05 0.00 0.00 1.90
5284 7699 6.590234 ATGCGTATGTCAGATCCTACATTA 57.410 37.500 13.92 2.72 37.50 1.90
5285 7700 5.769367 TGCGTATGTCAGATCCTACATTAC 58.231 41.667 13.92 9.90 37.50 1.89
5286 7701 5.535030 TGCGTATGTCAGATCCTACATTACT 59.465 40.000 13.92 0.00 37.50 2.24
5288 7703 7.094762 TGCGTATGTCAGATCCTACATTACTAG 60.095 40.741 13.92 0.00 37.50 2.57
5371 8117 7.124901 ACATGACATGTTTCTACATAGTCTCCT 59.875 37.037 15.48 0.00 43.07 3.69
5416 8163 7.076842 ACAATCTTGTAGCACATATGTCAAC 57.923 36.000 5.07 5.19 40.16 3.18
5434 8181 0.446222 ACGGGATGCGTTTCAAATCG 59.554 50.000 0.00 0.00 0.00 3.34
5524 8271 2.821969 GCAACATGTCCTGAGGTTCAAT 59.178 45.455 0.00 0.00 0.00 2.57
5561 8308 8.752766 TTGTTAATAGTGTCCTAGACTTTTCG 57.247 34.615 0.00 0.00 33.15 3.46
5572 8319 5.186992 TCCTAGACTTTTCGATGACATGGAA 59.813 40.000 8.64 8.64 0.00 3.53
5610 8357 6.074648 AGTGAGAGAATATAGTCTCCCCTTG 58.925 44.000 23.03 0.00 44.43 3.61
5625 8372 1.747355 CCCTTGGTGAAGTGATGATGC 59.253 52.381 0.00 0.00 0.00 3.91
5628 8375 2.885135 TGGTGAAGTGATGATGCCTT 57.115 45.000 0.00 0.00 0.00 4.35
5641 8388 1.830279 ATGCCTTCATATGCATCCCG 58.170 50.000 0.19 0.00 44.58 5.14
5746 8493 3.565902 GGGAGACAAAGAAAAGACAGTGG 59.434 47.826 0.00 0.00 0.00 4.00
5786 8534 3.376546 GGGGGTTTGTGGTCATGC 58.623 61.111 0.00 0.00 0.00 4.06
5788 8536 1.535204 GGGGGTTTGTGGTCATGCTG 61.535 60.000 0.00 0.00 0.00 4.41
5851 8606 5.818678 AAAACCCAGAATAAAAAGGGGAC 57.181 39.130 1.34 0.00 45.83 4.46
5899 8655 7.624360 AAGATGTGTTTTAGTTCACTTGACA 57.376 32.000 0.00 0.00 35.82 3.58
5908 8664 2.874701 AGTTCACTTGACATGCTCACAC 59.125 45.455 0.00 0.00 0.00 3.82
5953 8709 9.474313 TGTCTAATAAATATTGGGCTTGACTTT 57.526 29.630 3.36 0.00 31.15 2.66
5964 8720 3.181480 GGGCTTGACTTTGCAGTTAACAA 60.181 43.478 8.61 0.00 31.22 2.83
5980 8736 6.145696 CAGTTAACAACCTCTACTGCACTTAC 59.854 42.308 8.61 0.00 31.01 2.34
5987 8745 5.306394 ACCTCTACTGCACTTACCTTTTTC 58.694 41.667 0.00 0.00 0.00 2.29
6104 8864 5.431765 AGTAGAAAGATGCAATACAGTGGG 58.568 41.667 0.00 0.00 0.00 4.61
6110 8870 5.587388 AGATGCAATACAGTGGGAAAATG 57.413 39.130 0.00 0.00 0.00 2.32
6126 8886 5.700373 GGGAAAATGCAATGCAGTAGAAAAA 59.300 36.000 14.98 0.00 43.65 1.94
6127 8887 6.347644 GGGAAAATGCAATGCAGTAGAAAAAC 60.348 38.462 14.98 0.00 43.65 2.43
6285 9743 1.365028 AGGAGTGGAGGCCCTTAACTA 59.635 52.381 0.00 0.00 0.00 2.24
6338 9796 0.392060 GGTGGGGGTGTTACATCGAC 60.392 60.000 0.00 0.00 0.00 4.20
6436 10514 4.959839 AGAAGAAGAGGAAACTAGCTAGGG 59.040 45.833 24.35 1.84 44.43 3.53
6463 10541 7.121759 CACTCTTCCATCCAACATTTAACAGAT 59.878 37.037 0.00 0.00 0.00 2.90
6587 10745 6.061022 TCCTATTTGTCATTCAGCCACTTA 57.939 37.500 0.00 0.00 0.00 2.24
6589 10747 7.801104 TCCTATTTGTCATTCAGCCACTTATA 58.199 34.615 0.00 0.00 0.00 0.98
6708 10868 5.737290 CGTCCCATAATAAAGAGCGTTTTTG 59.263 40.000 0.00 0.00 0.00 2.44
6733 10893 5.986004 ACTAGTGTAGTGTCAAAAAGTGC 57.014 39.130 0.00 0.00 37.69 4.40
6746 10906 9.226345 GTGTCAAAAAGTGCTCTTATATTATGC 57.774 33.333 0.66 0.00 33.09 3.14
6747 10907 8.955388 TGTCAAAAAGTGCTCTTATATTATGCA 58.045 29.630 0.66 0.00 33.09 3.96
6751 10911 6.545504 AAGTGCTCTTATATTATGCAACGG 57.454 37.500 0.00 0.00 35.34 4.44
6752 10912 5.853936 AGTGCTCTTATATTATGCAACGGA 58.146 37.500 0.00 0.00 35.34 4.69
6886 11047 5.753438 TCCGACATTGCAACACTTAGATATC 59.247 40.000 0.00 0.00 0.00 1.63
7223 11459 5.045872 GCTGCAATTTAATGAGATTCCCAC 58.954 41.667 0.00 0.00 0.00 4.61
7397 11633 6.595682 ACATCATATGTTCTCCCTTTCGATT 58.404 36.000 1.90 0.00 41.63 3.34
7535 11974 3.840666 ACTTCACTCTCTATCTTGGCCAA 59.159 43.478 19.25 19.25 0.00 4.52
7578 12017 5.734720 ACAAGATTAGTGGACACATACCTG 58.265 41.667 5.14 0.00 0.00 4.00
7595 12034 4.696479 ACCTGAGTCAGTTTGTGATTCT 57.304 40.909 18.74 0.00 41.45 2.40
7699 12138 3.367025 GTGTTGAGTTTACGGGAGAATCG 59.633 47.826 0.00 0.00 34.37 3.34
8111 16281 1.615392 AGTGCTTTCAATGGAACTGGC 59.385 47.619 0.00 0.00 31.35 4.85
8114 16284 2.224018 TGCTTTCAATGGAACTGGCAAC 60.224 45.455 2.86 0.00 33.43 4.17
8129 16302 2.290641 TGGCAACGTTGAACATCCCTAT 60.291 45.455 31.62 0.00 42.51 2.57
8130 16303 2.354821 GGCAACGTTGAACATCCCTATC 59.645 50.000 31.62 8.87 0.00 2.08
8131 16304 3.006940 GCAACGTTGAACATCCCTATCA 58.993 45.455 31.62 0.00 0.00 2.15
8132 16305 3.063997 GCAACGTTGAACATCCCTATCAG 59.936 47.826 31.62 0.00 0.00 2.90
8133 16306 3.543680 ACGTTGAACATCCCTATCAGG 57.456 47.619 0.00 0.00 34.30 3.86
8134 16307 3.104512 ACGTTGAACATCCCTATCAGGA 58.895 45.455 0.00 0.00 37.67 3.86
8135 16308 3.517901 ACGTTGAACATCCCTATCAGGAA 59.482 43.478 0.00 0.00 40.04 3.36
8136 16309 4.164221 ACGTTGAACATCCCTATCAGGAAT 59.836 41.667 0.00 0.00 40.04 3.01
8197 16370 5.624159 AGGACATTCAACAAGATCTTGACA 58.376 37.500 36.15 18.89 42.93 3.58
8249 16422 4.248174 TCATTTGATGGCACCATTCCTA 57.752 40.909 3.16 0.00 36.70 2.94
8255 16428 0.758734 TGGCACCATTCCTAGATCGG 59.241 55.000 0.00 0.00 0.00 4.18
8275 16448 2.163613 GGTTGGGAGGCTTATTTCGTTG 59.836 50.000 0.00 0.00 0.00 4.10
8379 16552 2.173569 ACCTGTCTCAGAACCAGCTTTT 59.826 45.455 0.00 0.00 32.44 2.27
8398 16571 4.314522 TTTTGGTGATATTCCAGAGGCA 57.685 40.909 0.00 0.00 36.28 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.951642 TCAAATTGGGCTCCGAATCATC 59.048 45.455 0.00 0.00 0.00 2.92
5 6 0.695924 TCCTCAAATTGGGCTCCGAA 59.304 50.000 0.00 0.00 0.00 4.30
8 9 1.923356 TTGTCCTCAAATTGGGCTCC 58.077 50.000 0.00 0.00 0.00 4.70
9 10 4.440663 GCTAATTGTCCTCAAATTGGGCTC 60.441 45.833 0.00 0.00 37.11 4.70
10 11 3.448660 GCTAATTGTCCTCAAATTGGGCT 59.551 43.478 0.00 0.00 37.11 5.19
11 12 3.195396 TGCTAATTGTCCTCAAATTGGGC 59.805 43.478 0.00 0.00 37.11 5.36
12 13 5.603170 ATGCTAATTGTCCTCAAATTGGG 57.397 39.130 0.00 0.00 37.11 4.12
13 14 6.870769 AGAATGCTAATTGTCCTCAAATTGG 58.129 36.000 0.00 0.00 37.11 3.16
14 15 7.487189 GTGAGAATGCTAATTGTCCTCAAATTG 59.513 37.037 0.00 0.00 35.66 2.32
15 16 7.363268 GGTGAGAATGCTAATTGTCCTCAAATT 60.363 37.037 0.00 0.00 35.66 1.82
17 18 5.415701 GGTGAGAATGCTAATTGTCCTCAAA 59.584 40.000 0.00 0.00 35.66 2.69
19 20 4.019411 TGGTGAGAATGCTAATTGTCCTCA 60.019 41.667 0.00 0.00 35.66 3.86
20 21 4.517285 TGGTGAGAATGCTAATTGTCCTC 58.483 43.478 0.00 0.00 35.66 3.71
21 22 4.018960 ACTGGTGAGAATGCTAATTGTCCT 60.019 41.667 0.00 0.00 35.66 3.85
22 23 4.095483 CACTGGTGAGAATGCTAATTGTCC 59.905 45.833 0.00 0.00 35.66 4.02
23 24 4.437930 GCACTGGTGAGAATGCTAATTGTC 60.438 45.833 4.79 0.00 36.76 3.18
24 25 3.441572 GCACTGGTGAGAATGCTAATTGT 59.558 43.478 4.79 0.00 35.16 2.71
25 26 3.181493 GGCACTGGTGAGAATGCTAATTG 60.181 47.826 4.79 0.00 38.18 2.32
27 28 2.648059 GGCACTGGTGAGAATGCTAAT 58.352 47.619 4.79 0.00 38.18 1.73
28 29 1.675714 CGGCACTGGTGAGAATGCTAA 60.676 52.381 4.79 0.00 38.18 3.09
29 30 0.108186 CGGCACTGGTGAGAATGCTA 60.108 55.000 4.79 0.00 38.18 3.49
30 31 1.376424 CGGCACTGGTGAGAATGCT 60.376 57.895 4.79 0.00 38.18 3.79
31 32 3.044059 GCGGCACTGGTGAGAATGC 62.044 63.158 4.79 0.00 37.35 3.56
32 33 2.743752 CGCGGCACTGGTGAGAATG 61.744 63.158 0.00 0.00 0.00 2.67
33 34 2.434884 CGCGGCACTGGTGAGAAT 60.435 61.111 0.00 0.00 0.00 2.40
34 35 2.089887 TAACGCGGCACTGGTGAGAA 62.090 55.000 12.47 0.00 0.00 2.87
35 36 2.566570 TAACGCGGCACTGGTGAGA 61.567 57.895 12.47 0.00 0.00 3.27
37 38 2.356553 GTAACGCGGCACTGGTGA 60.357 61.111 12.47 0.00 0.00 4.02
38 39 3.419759 GGTAACGCGGCACTGGTG 61.420 66.667 12.47 0.00 0.00 4.17
40 41 2.852495 ATCAGGTAACGCGGCACTGG 62.852 60.000 12.47 4.44 46.39 4.00
43 44 1.423845 CAATCAGGTAACGCGGCAC 59.576 57.895 12.47 7.52 46.39 5.01
44 45 2.395360 GCAATCAGGTAACGCGGCA 61.395 57.895 12.47 0.00 46.39 5.69
45 46 1.714899 ATGCAATCAGGTAACGCGGC 61.715 55.000 12.47 0.00 46.39 6.53
46 47 0.732571 AATGCAATCAGGTAACGCGG 59.267 50.000 12.47 0.00 46.39 6.46
47 48 1.813896 CAATGCAATCAGGTAACGCG 58.186 50.000 3.53 3.53 46.39 6.01
48 49 1.135431 TGCAATGCAATCAGGTAACGC 60.135 47.619 5.01 0.00 37.34 4.84
50 51 4.142315 ACAGATGCAATGCAATCAGGTAAC 60.142 41.667 13.45 0.00 43.62 2.50
52 53 3.623703 ACAGATGCAATGCAATCAGGTA 58.376 40.909 13.45 0.00 43.62 3.08
53 54 2.453521 ACAGATGCAATGCAATCAGGT 58.546 42.857 13.45 9.85 43.62 4.00
54 55 4.519350 AGATACAGATGCAATGCAATCAGG 59.481 41.667 13.45 9.29 43.62 3.86
55 56 5.470437 AGAGATACAGATGCAATGCAATCAG 59.530 40.000 13.45 9.83 43.62 2.90
56 57 5.374071 AGAGATACAGATGCAATGCAATCA 58.626 37.500 13.45 0.00 43.62 2.57
57 58 5.943706 AGAGATACAGATGCAATGCAATC 57.056 39.130 13.45 10.37 43.62 2.67
58 59 6.374613 CCATAGAGATACAGATGCAATGCAAT 59.625 38.462 13.45 0.00 43.62 3.56
59 60 5.704053 CCATAGAGATACAGATGCAATGCAA 59.296 40.000 13.45 0.00 43.62 4.08
60 61 5.243207 CCATAGAGATACAGATGCAATGCA 58.757 41.667 11.44 11.44 44.86 3.96
61 62 4.094590 GCCATAGAGATACAGATGCAATGC 59.905 45.833 0.00 0.00 0.00 3.56
63 64 4.020751 ACGCCATAGAGATACAGATGCAAT 60.021 41.667 0.00 0.00 0.00 3.56
64 65 3.321968 ACGCCATAGAGATACAGATGCAA 59.678 43.478 0.00 0.00 0.00 4.08
65 66 2.893489 ACGCCATAGAGATACAGATGCA 59.107 45.455 0.00 0.00 0.00 3.96
66 67 3.192422 AGACGCCATAGAGATACAGATGC 59.808 47.826 0.00 0.00 0.00 3.91
67 68 4.731720 CAGACGCCATAGAGATACAGATG 58.268 47.826 0.00 0.00 0.00 2.90
68 69 3.192422 GCAGACGCCATAGAGATACAGAT 59.808 47.826 0.00 0.00 0.00 2.90
69 70 2.554462 GCAGACGCCATAGAGATACAGA 59.446 50.000 0.00 0.00 0.00 3.41
70 71 2.940147 GCAGACGCCATAGAGATACAG 58.060 52.381 0.00 0.00 0.00 2.74
83 84 0.527385 CTCTTCAGCTAGGCAGACGC 60.527 60.000 0.00 0.00 37.44 5.19
84 85 1.098869 TCTCTTCAGCTAGGCAGACG 58.901 55.000 0.00 0.00 0.00 4.18
85 86 2.495669 ACTTCTCTTCAGCTAGGCAGAC 59.504 50.000 0.00 0.00 0.00 3.51
86 87 2.495270 CACTTCTCTTCAGCTAGGCAGA 59.505 50.000 0.00 0.00 0.00 4.26
87 88 2.233431 ACACTTCTCTTCAGCTAGGCAG 59.767 50.000 0.00 0.00 0.00 4.85
89 90 3.258228 GAACACTTCTCTTCAGCTAGGC 58.742 50.000 0.00 0.00 0.00 3.93
90 91 3.259374 TGGAACACTTCTCTTCAGCTAGG 59.741 47.826 0.00 0.00 0.00 3.02
107 108 5.186409 TGTTGGGTACTACTACTGATGGAAC 59.814 44.000 0.00 0.00 0.00 3.62
108 109 5.335261 TGTTGGGTACTACTACTGATGGAA 58.665 41.667 0.00 0.00 0.00 3.53
109 110 4.938028 TGTTGGGTACTACTACTGATGGA 58.062 43.478 0.00 0.00 0.00 3.41
110 111 5.670792 TTGTTGGGTACTACTACTGATGG 57.329 43.478 0.00 0.00 0.00 3.51
111 112 9.832445 ATTAATTGTTGGGTACTACTACTGATG 57.168 33.333 0.00 0.00 0.00 3.07
186 187 3.440127 ACTAGCAAGAGAGGAAAGCTCT 58.560 45.455 0.00 0.00 44.25 4.09
190 191 5.146010 ACTCAACTAGCAAGAGAGGAAAG 57.854 43.478 12.12 0.00 34.72 2.62
191 192 5.300752 CAACTCAACTAGCAAGAGAGGAAA 58.699 41.667 12.12 0.00 34.72 3.13
192 193 4.800914 GCAACTCAACTAGCAAGAGAGGAA 60.801 45.833 12.12 0.00 34.72 3.36
194 195 2.999355 GCAACTCAACTAGCAAGAGAGG 59.001 50.000 12.12 6.07 34.72 3.69
195 196 3.924144 AGCAACTCAACTAGCAAGAGAG 58.076 45.455 12.12 5.21 35.75 3.20
196 197 4.280929 TGTAGCAACTCAACTAGCAAGAGA 59.719 41.667 12.12 0.00 33.69 3.10
197 198 4.387256 GTGTAGCAACTCAACTAGCAAGAG 59.613 45.833 5.43 5.43 35.56 2.85
198 199 4.307432 GTGTAGCAACTCAACTAGCAAGA 58.693 43.478 0.00 0.00 0.00 3.02
199 200 3.121944 CGTGTAGCAACTCAACTAGCAAG 59.878 47.826 0.00 0.00 0.00 4.01
200 201 3.057019 CGTGTAGCAACTCAACTAGCAA 58.943 45.455 0.00 0.00 0.00 3.91
203 204 5.637809 TGATACGTGTAGCAACTCAACTAG 58.362 41.667 0.00 0.00 0.00 2.57
205 206 4.514781 TGATACGTGTAGCAACTCAACT 57.485 40.909 0.00 0.00 0.00 3.16
206 207 5.050634 TGTTTGATACGTGTAGCAACTCAAC 60.051 40.000 9.98 6.85 40.60 3.18
207 208 5.051153 TGTTTGATACGTGTAGCAACTCAA 58.949 37.500 9.98 0.37 40.60 3.02
208 209 4.623002 TGTTTGATACGTGTAGCAACTCA 58.377 39.130 9.98 9.66 40.60 3.41
209 210 5.371629 GTTGTTTGATACGTGTAGCAACTC 58.628 41.667 9.98 7.54 40.60 3.01
210 211 4.212636 GGTTGTTTGATACGTGTAGCAACT 59.787 41.667 9.98 0.00 40.60 3.16
212 213 4.127907 TGGTTGTTTGATACGTGTAGCAA 58.872 39.130 6.61 6.61 39.36 3.91
215 216 6.474819 TGATTGGTTGTTTGATACGTGTAG 57.525 37.500 0.00 0.00 0.00 2.74
216 217 6.862711 TTGATTGGTTGTTTGATACGTGTA 57.137 33.333 0.00 0.00 0.00 2.90
218 219 5.116983 GCTTTGATTGGTTGTTTGATACGTG 59.883 40.000 0.00 0.00 0.00 4.49
219 220 5.009610 AGCTTTGATTGGTTGTTTGATACGT 59.990 36.000 0.00 0.00 0.00 3.57
220 221 5.460646 AGCTTTGATTGGTTGTTTGATACG 58.539 37.500 0.00 0.00 0.00 3.06
221 222 7.593825 AGTAGCTTTGATTGGTTGTTTGATAC 58.406 34.615 0.00 0.00 0.00 2.24
223 224 6.294731 GGAGTAGCTTTGATTGGTTGTTTGAT 60.295 38.462 0.00 0.00 0.00 2.57
236 237 1.549170 GAACGGAGGGAGTAGCTTTGA 59.451 52.381 0.00 0.00 0.00 2.69
245 246 3.521947 AGTAATTTCGAACGGAGGGAG 57.478 47.619 0.00 0.00 0.00 4.30
246 247 3.007182 ACAAGTAATTTCGAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
247 248 3.332034 ACAAGTAATTTCGAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
248 249 3.060363 CGACAAGTAATTTCGAACGGAGG 59.940 47.826 0.00 0.00 34.62 4.30
249 250 3.481467 GCGACAAGTAATTTCGAACGGAG 60.481 47.826 0.00 0.00 34.62 4.63
250 251 2.409378 GCGACAAGTAATTTCGAACGGA 59.591 45.455 0.00 0.00 34.62 4.69
251 252 2.156117 TGCGACAAGTAATTTCGAACGG 59.844 45.455 0.00 0.00 34.62 4.44
252 253 3.120616 TCTGCGACAAGTAATTTCGAACG 59.879 43.478 0.00 0.00 34.62 3.95
253 254 4.640805 TCTGCGACAAGTAATTTCGAAC 57.359 40.909 0.00 0.00 34.62 3.95
256 257 4.788100 CCATTTCTGCGACAAGTAATTTCG 59.212 41.667 0.00 4.05 35.82 3.46
257 258 5.938322 TCCATTTCTGCGACAAGTAATTTC 58.062 37.500 0.00 0.00 0.00 2.17
258 259 5.957842 TCCATTTCTGCGACAAGTAATTT 57.042 34.783 0.00 0.00 0.00 1.82
259 260 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
261 262 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
263 264 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
264 265 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
267 268 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
268 269 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
270 271 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
294 295 9.490379 GGAAATGGATGTATCTAGACGTATTTT 57.510 33.333 0.00 0.00 0.00 1.82
296 297 7.176165 TCGGAAATGGATGTATCTAGACGTATT 59.824 37.037 0.00 0.00 0.00 1.89
297 298 6.657966 TCGGAAATGGATGTATCTAGACGTAT 59.342 38.462 0.00 0.00 0.00 3.06
299 300 4.825634 TCGGAAATGGATGTATCTAGACGT 59.174 41.667 0.00 0.00 0.00 4.34
300 301 5.181433 TCTCGGAAATGGATGTATCTAGACG 59.819 44.000 0.00 0.00 0.00 4.18
301 302 6.016192 TGTCTCGGAAATGGATGTATCTAGAC 60.016 42.308 0.00 0.00 0.00 2.59
303 304 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
304 305 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
305 306 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
306 307 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
307 308 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
310 311 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
311 312 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
312 313 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
313 314 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
314 315 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
315 316 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
316 317 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
317 318 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
318 319 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
319 320 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
320 321 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
321 322 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
322 323 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
323 324 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
324 325 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
325 326 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
326 327 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
327 328 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
328 329 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
329 330 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
330 331 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
331 332 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
332 333 1.308069 CGTACTCCCTCCGTTCGGAA 61.308 60.000 14.79 0.04 33.41 4.30
335 336 1.303309 ATACGTACTCCCTCCGTTCG 58.697 55.000 0.00 0.00 36.12 3.95
336 337 2.223665 CCAATACGTACTCCCTCCGTTC 60.224 54.545 0.00 0.00 36.12 3.95
337 338 1.753073 CCAATACGTACTCCCTCCGTT 59.247 52.381 0.00 0.00 36.12 4.44
338 339 1.341383 ACCAATACGTACTCCCTCCGT 60.341 52.381 0.00 0.00 38.53 4.69
339 340 1.396653 ACCAATACGTACTCCCTCCG 58.603 55.000 0.00 0.00 0.00 4.63
340 341 3.560105 AGTACCAATACGTACTCCCTCC 58.440 50.000 0.00 0.00 44.47 4.30
368 369 3.861341 CCATGTAGTGGTGGAGGTG 57.139 57.895 0.00 0.00 43.44 4.00
425 426 4.847367 CAATCCCAGCCCAGCCCC 62.847 72.222 0.00 0.00 0.00 5.80
426 427 4.847367 CCAATCCCAGCCCAGCCC 62.847 72.222 0.00 0.00 0.00 5.19
443 448 3.723348 GGACGGCGACTTGGTTGC 61.723 66.667 16.62 1.60 41.81 4.17
457 462 2.872858 GCGAAATTGTATGGAGGAGGAC 59.127 50.000 0.00 0.00 0.00 3.85
485 490 4.201861 GCCAATTTTCTCTGTAGCTAGTGC 60.202 45.833 0.00 0.00 40.05 4.40
516 521 1.649321 TGCCAAGAGGATCAGACAGT 58.351 50.000 0.00 0.00 37.82 3.55
525 535 4.529769 CAGAGACCATATATGCCAAGAGGA 59.470 45.833 7.24 0.00 36.89 3.71
529 539 4.040829 TGGACAGAGACCATATATGCCAAG 59.959 45.833 7.24 0.00 32.03 3.61
597 607 7.358435 GCAAGACTTGTACTATATATGTGCGTG 60.358 40.741 16.39 0.00 0.00 5.34
600 610 8.594881 AAGCAAGACTTGTACTATATATGTGC 57.405 34.615 16.39 0.00 37.17 4.57
601 611 8.906693 CGAAGCAAGACTTGTACTATATATGTG 58.093 37.037 16.39 0.00 39.29 3.21
640 658 5.122239 TCTCAATAATGCAACGGTTCAAGAG 59.878 40.000 0.00 0.00 0.00 2.85
662 681 7.093945 GGTCAAGACTCAAGACTCTAATCTTCT 60.094 40.741 0.00 0.00 36.78 2.85
670 689 3.252554 AGGGTCAAGACTCAAGACTCT 57.747 47.619 2.53 0.00 38.24 3.24
680 699 1.066787 GCACTGGTCTAGGGTCAAGAC 60.067 57.143 0.00 0.00 42.19 3.01
681 700 1.267121 GCACTGGTCTAGGGTCAAGA 58.733 55.000 0.00 0.00 30.24 3.02
682 701 0.976641 TGCACTGGTCTAGGGTCAAG 59.023 55.000 0.00 0.00 30.24 3.02
684 703 1.429930 TTTGCACTGGTCTAGGGTCA 58.570 50.000 0.00 0.00 30.24 4.02
685 704 2.152016 GTTTTGCACTGGTCTAGGGTC 58.848 52.381 0.00 0.00 30.24 4.46
689 708 4.576463 ACTTGAAGTTTTGCACTGGTCTAG 59.424 41.667 0.00 0.00 35.12 2.43
700 719 8.019669 CCAGAAGTCATATCACTTGAAGTTTTG 58.980 37.037 0.00 0.00 36.71 2.44
750 770 9.346725 CAGAGGATAAACAAAGCTGAATAAAAC 57.653 33.333 0.00 0.00 0.00 2.43
759 779 6.372937 GCTTTCTACAGAGGATAAACAAAGCT 59.627 38.462 0.00 0.00 39.92 3.74
772 792 2.231215 CCATCGGGCTTTCTACAGAG 57.769 55.000 0.00 0.00 0.00 3.35
784 804 0.748005 AACAAATCGGAGCCATCGGG 60.748 55.000 0.00 0.00 37.18 5.14
785 805 0.378257 CAACAAATCGGAGCCATCGG 59.622 55.000 0.00 0.00 0.00 4.18
787 807 0.740737 CCCAACAAATCGGAGCCATC 59.259 55.000 0.00 0.00 0.00 3.51
788 808 0.039618 ACCCAACAAATCGGAGCCAT 59.960 50.000 0.00 0.00 0.00 4.40
789 809 0.893270 CACCCAACAAATCGGAGCCA 60.893 55.000 0.00 0.00 0.00 4.75
790 810 1.883021 CACCCAACAAATCGGAGCC 59.117 57.895 0.00 0.00 0.00 4.70
791 811 1.212751 GCACCCAACAAATCGGAGC 59.787 57.895 0.00 0.00 0.00 4.70
792 812 1.737793 GTAGCACCCAACAAATCGGAG 59.262 52.381 0.00 0.00 0.00 4.63
793 813 1.349688 AGTAGCACCCAACAAATCGGA 59.650 47.619 0.00 0.00 0.00 4.55
794 814 1.821216 AGTAGCACCCAACAAATCGG 58.179 50.000 0.00 0.00 0.00 4.18
795 815 3.596214 AGTAGTAGCACCCAACAAATCG 58.404 45.455 0.00 0.00 0.00 3.34
797 817 4.910458 AGAGTAGTAGCACCCAACAAAT 57.090 40.909 0.00 0.00 0.00 2.32
798 818 4.699925 AAGAGTAGTAGCACCCAACAAA 57.300 40.909 0.00 0.00 0.00 2.83
799 819 4.699925 AAAGAGTAGTAGCACCCAACAA 57.300 40.909 0.00 0.00 0.00 2.83
800 820 4.347000 AGAAAAGAGTAGTAGCACCCAACA 59.653 41.667 0.00 0.00 0.00 3.33
801 821 4.895961 AGAAAAGAGTAGTAGCACCCAAC 58.104 43.478 0.00 0.00 0.00 3.77
804 824 4.020485 TCCAAGAAAAGAGTAGTAGCACCC 60.020 45.833 0.00 0.00 0.00 4.61
805 825 5.148651 TCCAAGAAAAGAGTAGTAGCACC 57.851 43.478 0.00 0.00 0.00 5.01
806 826 5.785243 ACTCCAAGAAAAGAGTAGTAGCAC 58.215 41.667 0.00 0.00 41.51 4.40
807 827 6.720288 AGTACTCCAAGAAAAGAGTAGTAGCA 59.280 38.462 5.87 0.00 43.95 3.49
808 828 7.160547 AGTACTCCAAGAAAAGAGTAGTAGC 57.839 40.000 5.87 0.00 43.95 3.58
809 829 8.245491 GGAAGTACTCCAAGAAAAGAGTAGTAG 58.755 40.741 0.00 0.00 44.65 2.57
810 830 8.120140 GGAAGTACTCCAAGAAAAGAGTAGTA 57.880 38.462 0.00 0.00 44.65 1.82
811 831 6.995364 GGAAGTACTCCAAGAAAAGAGTAGT 58.005 40.000 0.00 1.43 46.42 2.73
830 850 2.197465 GATGTGGGTAAGGAGGGAAGT 58.803 52.381 0.00 0.00 0.00 3.01
839 859 0.462047 GACGGCTGGATGTGGGTAAG 60.462 60.000 0.00 0.00 0.00 2.34
843 863 3.391665 GAGGACGGCTGGATGTGGG 62.392 68.421 0.00 0.00 0.00 4.61
847 867 1.976132 ATGGTGAGGACGGCTGGATG 61.976 60.000 0.00 0.00 0.00 3.51
848 868 1.274703 AATGGTGAGGACGGCTGGAT 61.275 55.000 0.00 0.00 0.00 3.41
861 881 8.893219 TCTTCAGCTCTAATAATGTAATGGTG 57.107 34.615 0.00 0.00 0.00 4.17
900 920 3.786818 GCGATCGAAGCAGAAAAGAATGG 60.787 47.826 21.57 0.00 34.19 3.16
902 922 2.352960 GGCGATCGAAGCAGAAAAGAAT 59.647 45.455 21.57 0.00 36.08 2.40
907 927 1.449601 GGGGCGATCGAAGCAGAAA 60.450 57.895 21.57 0.00 36.08 2.52
925 945 5.643379 TGTTGCAAGGCTTTTTATAGAGG 57.357 39.130 0.00 0.00 0.00 3.69
949 969 9.274206 GTACTTGTTTATTTCTCTTTGAGAGGT 57.726 33.333 5.22 0.00 42.54 3.85
953 973 9.057089 AGGTGTACTTGTTTATTTCTCTTTGAG 57.943 33.333 0.00 0.00 0.00 3.02
954 974 8.974060 AGGTGTACTTGTTTATTTCTCTTTGA 57.026 30.769 0.00 0.00 0.00 2.69
956 976 7.172703 CGGAGGTGTACTTGTTTATTTCTCTTT 59.827 37.037 0.00 0.00 0.00 2.52
959 979 5.930569 ACGGAGGTGTACTTGTTTATTTCTC 59.069 40.000 0.00 0.00 0.00 2.87
960 980 5.699458 CACGGAGGTGTACTTGTTTATTTCT 59.301 40.000 0.00 0.00 39.38 2.52
961 981 5.923665 CACGGAGGTGTACTTGTTTATTTC 58.076 41.667 0.00 0.00 39.38 2.17
996 1025 1.994779 CAACCGATTGAAGCCATTTGC 59.005 47.619 0.00 0.00 38.15 3.68
1045 2843 4.162690 GGAGGTGGCTAGTGCGGG 62.163 72.222 0.00 0.00 40.82 6.13
1069 2870 3.119919 AGAGTGAAGTTACCGTCATCGTC 60.120 47.826 0.00 0.00 31.70 4.20
1073 2874 2.163815 CGGAGAGTGAAGTTACCGTCAT 59.836 50.000 0.00 0.00 36.38 3.06
1084 2888 0.465705 GGATGGCATCGGAGAGTGAA 59.534 55.000 20.50 0.00 43.63 3.18
1119 2923 4.366267 AGGATTTCTTTAGCTGGAGGAGA 58.634 43.478 0.00 0.00 0.00 3.71
1145 2949 3.447944 GGCATTGGGGTAACGGAAAAATA 59.552 43.478 0.00 0.00 37.60 1.40
1149 2953 0.612453 GGGCATTGGGGTAACGGAAA 60.612 55.000 0.00 0.00 37.60 3.13
1171 2975 1.487976 AGTACCATCCTGCCATGACTG 59.512 52.381 0.00 0.00 0.00 3.51
1314 3123 3.118038 TGCTAAGGTCAAGTTGTTGGAGT 60.118 43.478 2.11 0.00 34.09 3.85
1522 3340 1.102978 ATAACATCAAGGGCGTTGGC 58.897 50.000 18.76 0.00 36.71 4.52
1619 3458 6.737720 TGCTAGACATATCCACTTCATCTT 57.262 37.500 0.00 0.00 0.00 2.40
1620 3459 5.279406 GCTGCTAGACATATCCACTTCATCT 60.279 44.000 0.00 0.00 0.00 2.90
1621 3460 4.928615 GCTGCTAGACATATCCACTTCATC 59.071 45.833 0.00 0.00 0.00 2.92
1707 3549 1.929860 TAGGACCCCCGAGTCGACAT 61.930 60.000 19.50 2.45 37.66 3.06
1752 3594 8.167392 TCTTGAAGGTTAATCACATTTAGGGAA 58.833 33.333 0.00 0.00 29.94 3.97
2028 3880 7.763528 TGCAAAGACTTGAAATTGCTAAAAGAA 59.236 29.630 10.25 0.00 46.27 2.52
2065 3917 7.622713 TCCATAAAAGCCAAATTCACATCAAT 58.377 30.769 0.00 0.00 0.00 2.57
2079 3931 5.068198 TGAAGATTGATGCTCCATAAAAGCC 59.932 40.000 0.00 0.00 39.05 4.35
2105 3966 4.426416 TCGTAAAGACATGTGAATACCGG 58.574 43.478 1.15 0.00 0.00 5.28
2418 4646 8.498358 GGATTAACAAATTCCAAGCTTTTCAAG 58.502 33.333 0.00 0.00 0.00 3.02
2536 4788 5.841957 AGATTGCCAATTGAAGATGGTAC 57.158 39.130 7.12 0.00 39.00 3.34
2778 5030 7.849804 TGAAAGATCTAACTCAATTAGGTGC 57.150 36.000 0.00 0.00 40.78 5.01
2890 5155 6.684686 TGCAGTGTCGTTTAGTACTAGAAAT 58.315 36.000 2.23 0.00 0.00 2.17
2960 5270 5.524284 AGCAACAGCGAATAGTCATAGTAG 58.476 41.667 0.00 0.00 0.00 2.57
3012 5322 8.105197 TCTGGATGCATGCTCATTAGTTATTAT 58.895 33.333 20.33 0.00 0.00 1.28
3024 5334 2.556144 TACCATCTGGATGCATGCTC 57.444 50.000 20.33 13.33 37.49 4.26
3204 5524 7.879070 ACATACGGACGTATATAGACATTGTT 58.121 34.615 15.98 0.00 39.07 2.83
3266 5586 3.767309 AGGACATACTCCCTCTGTTCT 57.233 47.619 0.00 0.00 40.53 3.01
3274 5594 4.762289 ATCTCACAAAGGACATACTCCC 57.238 45.455 0.00 0.00 40.53 4.30
3432 5754 1.401199 TGTATTGTGATGGCGTGCATG 59.599 47.619 0.09 0.09 0.00 4.06
3434 5756 0.801872 GTGTATTGTGATGGCGTGCA 59.198 50.000 0.00 0.00 0.00 4.57
3541 5906 1.921243 TCGTCGTATGTGGCTTCATG 58.079 50.000 6.13 0.00 0.00 3.07
4004 6380 1.666189 GGCGATGGAGACTAGTTTTGC 59.334 52.381 0.00 0.00 0.00 3.68
4190 6589 0.949105 CTGTAGGCGGCTTGTTTCGT 60.949 55.000 19.76 0.00 0.00 3.85
4222 6621 1.133253 CGACAGCTGGCATGTTTCG 59.867 57.895 22.03 13.19 0.00 3.46
4224 6623 2.629656 GGCGACAGCTGGCATGTTT 61.630 57.895 22.03 0.00 44.37 2.83
4264 6663 2.099831 GTCGTGGGTAGCTCGACG 59.900 66.667 20.01 6.41 42.84 5.12
4272 6671 3.066190 CTGCCTCGGTCGTGGGTA 61.066 66.667 12.44 5.11 0.00 3.69
4326 6725 2.587194 CGATGCTTGGAGCTCGGG 60.587 66.667 7.83 1.19 42.97 5.14
4328 6727 0.943359 GATCCGATGCTTGGAGCTCG 60.943 60.000 7.83 11.90 42.97 5.03
4356 6755 1.167155 TCTAGATGACGGAGGAGCGC 61.167 60.000 0.00 0.00 0.00 5.92
4358 6757 3.553922 CCAAATCTAGATGACGGAGGAGC 60.554 52.174 5.86 0.00 0.00 4.70
4366 6765 3.126831 CGGCTCACCAAATCTAGATGAC 58.873 50.000 5.86 0.00 34.57 3.06
4372 6771 1.223487 GCCCGGCTCACCAAATCTA 59.777 57.895 0.71 0.00 34.57 1.98
4422 6821 1.136828 TGTCTGTTGGTTACTGGGCT 58.863 50.000 0.00 0.00 0.00 5.19
4435 6834 2.203015 AGGTGCGCGTTTGTCTGT 60.203 55.556 8.43 0.00 0.00 3.41
4516 6915 3.751246 CGGGCAGCATGGGTTGTG 61.751 66.667 0.00 0.00 35.86 3.33
4562 6961 1.378911 TAGGAGACAACGGCGGCTA 60.379 57.895 13.24 0.00 0.00 3.93
4567 6966 1.153549 CTGGCTAGGAGACAACGGC 60.154 63.158 0.00 0.00 29.23 5.68
4571 6970 0.898326 TGCGTCTGGCTAGGAGACAA 60.898 55.000 0.00 0.00 44.05 3.18
4954 7353 3.787001 GTCCTTCCCTCGCCCCTG 61.787 72.222 0.00 0.00 0.00 4.45
4976 7375 9.674068 AACAGAAAAAGTCTAGAGAAAGTTTCT 57.326 29.630 18.05 18.05 37.52 2.52
5065 7464 1.829222 TGACGATACAACCCCTCTTCC 59.171 52.381 0.00 0.00 0.00 3.46
5146 7545 4.445557 AGCCTCCCTCATAATTTTCTCC 57.554 45.455 0.00 0.00 0.00 3.71
5158 7557 3.855159 TTTTTCGCTAGCCTCCCTC 57.145 52.632 9.66 0.00 0.00 4.30
5416 8163 0.446222 ACGATTTGAAACGCATCCCG 59.554 50.000 0.00 0.00 44.21 5.14
5434 8181 1.204941 ACTAGGAGCAACGACATCCAC 59.795 52.381 0.00 0.00 35.45 4.02
5498 8245 1.407437 CCTCAGGACATGTTGCCTACC 60.407 57.143 5.80 0.00 32.03 3.18
5524 8271 7.334421 GGACACTATTAACAATGAGCAAAGAGA 59.666 37.037 0.00 0.00 0.00 3.10
5561 8308 8.899427 TTTAATCATCTCTCTTCCATGTCATC 57.101 34.615 0.00 0.00 0.00 2.92
5604 8351 2.372264 CATCATCACTTCACCAAGGGG 58.628 52.381 0.00 0.00 33.27 4.79
5610 8357 2.715046 TGAAGGCATCATCACTTCACC 58.285 47.619 0.00 0.00 43.90 4.02
5702 8449 5.939296 CCCAAGAAAATGCACAATGGTAAAT 59.061 36.000 0.00 0.00 0.00 1.40
5720 8467 5.110814 TGTCTTTTCTTTGTCTCCCAAGA 57.889 39.130 0.00 0.00 33.75 3.02
5746 8493 0.452122 AAAATTGTGTCGCGCGCTAC 60.452 50.000 30.48 28.55 0.00 3.58
5802 8550 5.627499 TGTTTAGGCTTATGCAACTCTTG 57.373 39.130 0.00 0.00 41.91 3.02
5832 8587 3.817931 GCTGTCCCCTTTTTATTCTGGGT 60.818 47.826 0.00 0.00 38.03 4.51
5849 8604 5.390567 CCTTCAAAATGTACTAACCGCTGTC 60.391 44.000 0.00 0.00 0.00 3.51
5850 8605 4.454504 CCTTCAAAATGTACTAACCGCTGT 59.545 41.667 0.00 0.00 0.00 4.40
5851 8606 4.693566 TCCTTCAAAATGTACTAACCGCTG 59.306 41.667 0.00 0.00 0.00 5.18
5899 8655 2.165167 CAAAGACATGGGTGTGAGCAT 58.835 47.619 0.00 0.00 39.09 3.79
5964 8720 4.976540 AAAAGGTAAGTGCAGTAGAGGT 57.023 40.909 0.00 0.00 0.00 3.85
5987 8745 8.874816 GCAGTAGAAAGAAGGTAAGTGAAATAG 58.125 37.037 0.00 0.00 0.00 1.73
6104 8864 7.412137 AGTTTTTCTACTGCATTGCATTTTC 57.588 32.000 12.53 0.00 38.13 2.29
6110 8870 9.237846 GGATAAATAGTTTTTCTACTGCATTGC 57.762 33.333 0.46 0.46 0.00 3.56
6265 9723 0.119358 AGTTAAGGGCCTCCACTCCT 59.881 55.000 6.46 0.00 34.83 3.69
6338 9796 4.689812 GCTATCTGAGATGGTGCATGTAAG 59.310 45.833 4.96 0.00 0.00 2.34
6436 10514 5.048083 TGTTAAATGTTGGATGGAAGAGTGC 60.048 40.000 0.00 0.00 0.00 4.40
6463 10541 6.919775 AGAGCTAAGAAAGAAGGACTTGTA 57.080 37.500 0.00 0.00 38.98 2.41
6730 10890 5.120830 CCTCCGTTGCATAATATAAGAGCAC 59.879 44.000 0.00 0.00 34.56 4.40
6731 10891 5.237815 CCTCCGTTGCATAATATAAGAGCA 58.762 41.667 0.00 0.00 0.00 4.26
6733 10893 6.037786 TCCCTCCGTTGCATAATATAAGAG 57.962 41.667 0.00 0.00 0.00 2.85
6746 10906 7.442656 ACTTATATGAAATACTCCCTCCGTTG 58.557 38.462 0.00 0.00 0.00 4.10
6747 10907 7.613551 ACTTATATGAAATACTCCCTCCGTT 57.386 36.000 0.00 0.00 0.00 4.44
6886 11047 1.151668 CAGAGAGCTGGTTGAAACGG 58.848 55.000 0.00 0.00 38.51 4.44
7223 11459 2.351350 GGTTAAGGTGTGCCAATGAACG 60.351 50.000 0.00 0.00 37.19 3.95
7397 11633 6.472887 ACTAAGATCAAGAATTTCCAACCGA 58.527 36.000 0.00 0.00 0.00 4.69
7535 11974 8.980481 TCTTGTTTTTAGAAATCCTGAACTCT 57.020 30.769 0.00 0.00 0.00 3.24
7578 12017 7.755822 ACGAATAGTAGAATCACAAACTGACTC 59.244 37.037 0.00 0.00 0.00 3.36
7595 12034 3.272574 AGGTCGAGGACACGAATAGTA 57.727 47.619 0.00 0.00 43.75 1.82
7699 12138 4.947388 TGGTAGGCAACATACCTTCAAATC 59.053 41.667 9.57 0.00 42.73 2.17
8111 16281 3.623060 CCTGATAGGGATGTTCAACGTTG 59.377 47.826 22.35 22.35 0.00 4.10
8114 16284 3.819564 TCCTGATAGGGATGTTCAACG 57.180 47.619 0.00 0.00 35.59 4.10
8129 16302 8.783660 ATAGTAACAGTATCCTGAATTCCTGA 57.216 34.615 12.34 5.53 41.50 3.86
8185 16358 7.919690 TGACTGTTAAAGTTGTCAAGATCTTG 58.080 34.615 26.56 26.56 40.07 3.02
8197 16370 8.918202 TTGATAGGTCAATGACTGTTAAAGTT 57.082 30.769 13.53 0.00 38.15 2.66
8249 16422 1.807814 ATAAGCCTCCCAACCGATCT 58.192 50.000 0.00 0.00 0.00 2.75
8255 16428 2.415491 GCAACGAAATAAGCCTCCCAAC 60.415 50.000 0.00 0.00 0.00 3.77
8299 16472 2.128035 GGAATATCACTCGTGAAGGCG 58.872 52.381 3.60 0.00 43.58 5.52
8379 16552 2.846206 AGTGCCTCTGGAATATCACCAA 59.154 45.455 3.72 0.00 36.95 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.