Multiple sequence alignment - TraesCS3B01G044700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G044700 chr3B 100.000 3856 0 0 1 3856 22673908 22677763 0.000000e+00 7121.0
1 TraesCS3B01G044700 chr3B 87.174 1918 196 27 1017 2913 22831292 22833180 0.000000e+00 2134.0
2 TraesCS3B01G044700 chr3B 92.105 646 47 4 846 1490 22802539 22803181 0.000000e+00 907.0
3 TraesCS3B01G044700 chr3B 79.589 1313 217 28 1577 2844 22803253 22804559 0.000000e+00 893.0
4 TraesCS3B01G044700 chr3B 87.184 593 66 6 1577 2159 22785290 22785882 0.000000e+00 665.0
5 TraesCS3B01G044700 chr3B 93.277 357 16 3 1 354 22793661 22794012 1.590000e-143 520.0
6 TraesCS3B01G044700 chr3B 89.145 304 6 7 579 855 22794041 22794344 1.700000e-93 353.0
7 TraesCS3B01G044700 chr3B 100.000 42 0 0 3783 3824 22677571 22677612 1.150000e-10 78.7
8 TraesCS3B01G044700 chr3B 100.000 42 0 0 3664 3705 22677690 22677731 1.150000e-10 78.7
9 TraesCS3B01G044700 chr3D 87.934 2420 242 27 940 3338 15916524 15918914 0.000000e+00 2806.0
10 TraesCS3B01G044700 chr3D 78.168 939 190 10 997 1925 15331520 15332453 5.550000e-163 584.0
11 TraesCS3B01G044700 chr3D 91.749 303 21 4 3365 3664 15918903 15919204 5.960000e-113 418.0
12 TraesCS3B01G044700 chr3D 74.919 614 91 36 208 781 15915741 15916331 5.010000e-54 222.0
13 TraesCS3B01G044700 chr3A 86.272 2025 217 39 922 2919 20745973 20743983 0.000000e+00 2143.0
14 TraesCS3B01G044700 chr3A 80.507 2052 338 43 500 2515 20727779 20725754 0.000000e+00 1517.0
15 TraesCS3B01G044700 chr3A 77.312 1168 208 35 1707 2828 20737275 20736119 1.510000e-178 636.0
16 TraesCS3B01G044700 chr3A 78.486 832 164 11 1062 1881 21066100 21065272 7.340000e-147 531.0
17 TraesCS3B01G044700 chr3A 83.019 318 33 12 3309 3622 20741962 20741662 6.350000e-68 268.0
18 TraesCS3B01G044700 chr3A 75.578 606 88 33 208 781 20728396 20727819 1.070000e-60 244.0
19 TraesCS3B01G044700 chr6B 86.957 69 9 0 1577 1645 707810811 707810879 1.150000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G044700 chr3B 22673908 22677763 3855 False 2426.133333 7121 100.000000 1 3856 3 chr3B.!!$F3 3855
1 TraesCS3B01G044700 chr3B 22831292 22833180 1888 False 2134.000000 2134 87.174000 1017 2913 1 chr3B.!!$F2 1896
2 TraesCS3B01G044700 chr3B 22802539 22804559 2020 False 900.000000 907 85.847000 846 2844 2 chr3B.!!$F5 1998
3 TraesCS3B01G044700 chr3B 22785290 22785882 592 False 665.000000 665 87.184000 1577 2159 1 chr3B.!!$F1 582
4 TraesCS3B01G044700 chr3B 22793661 22794344 683 False 436.500000 520 91.211000 1 855 2 chr3B.!!$F4 854
5 TraesCS3B01G044700 chr3D 15915741 15919204 3463 False 1148.666667 2806 84.867333 208 3664 3 chr3D.!!$F2 3456
6 TraesCS3B01G044700 chr3D 15331520 15332453 933 False 584.000000 584 78.168000 997 1925 1 chr3D.!!$F1 928
7 TraesCS3B01G044700 chr3A 20741662 20745973 4311 True 1205.500000 2143 84.645500 922 3622 2 chr3A.!!$R4 2700
8 TraesCS3B01G044700 chr3A 20725754 20728396 2642 True 880.500000 1517 78.042500 208 2515 2 chr3A.!!$R3 2307
9 TraesCS3B01G044700 chr3A 20736119 20737275 1156 True 636.000000 636 77.312000 1707 2828 1 chr3A.!!$R1 1121
10 TraesCS3B01G044700 chr3A 21065272 21066100 828 True 531.000000 531 78.486000 1062 1881 1 chr3A.!!$R2 819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
551 584 0.038709 TGCGGCAATTAACCTGCAAC 60.039 50.0 0.00 5.27 41.78 4.17 F
1028 1429 0.107361 ATTTGCCGGGTACTACCAGC 60.107 55.0 2.18 9.56 41.02 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1559 1968 0.173708 GTTCAGTACCTCCAGCTCGG 59.826 60.0 0.0 0.0 0.00 4.63 R
2938 3419 0.040514 TTGTGGTTGCGAATCTTGCG 60.041 50.0 0.0 0.0 34.24 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.007644 CTGACGGAGGTGCCTGCA 62.008 66.667 10.28 0.00 33.84 4.41
72 73 4.767255 CAGTCAGGCCGCCCAGTC 62.767 72.222 5.55 0.00 0.00 3.51
116 117 1.202099 TATCTGCCCCCGTGGTTTCA 61.202 55.000 0.00 0.00 36.04 2.69
149 150 1.269723 TCTTGTGCTCAGGTCAGTACG 59.730 52.381 0.00 0.00 31.98 3.67
150 151 1.000163 CTTGTGCTCAGGTCAGTACGT 60.000 52.381 0.00 0.00 31.98 3.57
151 152 1.900245 TGTGCTCAGGTCAGTACGTA 58.100 50.000 0.00 0.00 31.98 3.57
152 153 1.538512 TGTGCTCAGGTCAGTACGTAC 59.461 52.381 18.10 18.10 31.98 3.67
153 154 1.811359 GTGCTCAGGTCAGTACGTACT 59.189 52.381 22.45 22.45 36.90 2.73
181 182 4.227300 ACCTTATAAATGTGTGCTCCCTCA 59.773 41.667 0.00 0.00 0.00 3.86
186 187 0.994247 ATGTGTGCTCCCTCATTCCA 59.006 50.000 0.00 0.00 0.00 3.53
244 245 3.424962 GGTCGCTTATCTGTTCTGTTTGC 60.425 47.826 0.00 0.00 0.00 3.68
250 251 5.706916 CTTATCTGTTCTGTTTGCTGCATT 58.293 37.500 1.84 0.00 0.00 3.56
327 338 8.853077 TTTATCTGAATGACTGAATGTGTCTT 57.147 30.769 0.00 0.00 35.63 3.01
328 339 8.853077 TTATCTGAATGACTGAATGTGTCTTT 57.147 30.769 0.00 0.00 35.47 2.52
329 340 6.791887 TCTGAATGACTGAATGTGTCTTTC 57.208 37.500 12.49 12.49 43.15 2.62
355 366 5.825679 ACATAGCGTCTCAAGAGAAGTCTAT 59.174 40.000 13.19 14.94 39.48 1.98
357 368 7.499563 ACATAGCGTCTCAAGAGAAGTCTATAA 59.500 37.037 18.81 5.82 39.48 0.98
358 369 6.952773 AGCGTCTCAAGAGAAGTCTATAAT 57.047 37.500 13.19 0.00 39.48 1.28
359 370 7.341445 AGCGTCTCAAGAGAAGTCTATAATT 57.659 36.000 13.19 0.00 39.48 1.40
361 372 9.073475 AGCGTCTCAAGAGAAGTCTATAATTAT 57.927 33.333 13.19 2.97 39.48 1.28
362 373 9.123709 GCGTCTCAAGAGAAGTCTATAATTATG 57.876 37.037 8.28 0.00 39.48 1.90
384 395 4.348461 TGTGTACTGTAGAACCCATCCAAA 59.652 41.667 0.00 0.00 0.00 3.28
385 396 4.935808 GTGTACTGTAGAACCCATCCAAAG 59.064 45.833 0.00 0.00 0.00 2.77
392 403 1.000274 GAACCCATCCAAAGCACACAC 60.000 52.381 0.00 0.00 0.00 3.82
396 407 1.408340 CCATCCAAAGCACACACACAA 59.592 47.619 0.00 0.00 0.00 3.33
397 408 2.036217 CCATCCAAAGCACACACACAAT 59.964 45.455 0.00 0.00 0.00 2.71
398 409 3.493002 CCATCCAAAGCACACACACAATT 60.493 43.478 0.00 0.00 0.00 2.32
399 410 3.883830 TCCAAAGCACACACACAATTT 57.116 38.095 0.00 0.00 0.00 1.82
400 411 4.199432 TCCAAAGCACACACACAATTTT 57.801 36.364 0.00 0.00 0.00 1.82
401 412 3.931468 TCCAAAGCACACACACAATTTTG 59.069 39.130 0.00 0.00 0.00 2.44
402 413 3.931468 CCAAAGCACACACACAATTTTGA 59.069 39.130 0.00 0.00 0.00 2.69
403 414 4.571580 CCAAAGCACACACACAATTTTGAT 59.428 37.500 0.00 0.00 0.00 2.57
404 415 5.276963 CCAAAGCACACACACAATTTTGATC 60.277 40.000 0.00 0.00 0.00 2.92
406 417 2.725723 GCACACACACAATTTTGATCGG 59.274 45.455 0.00 0.00 0.00 4.18
407 418 3.549827 GCACACACACAATTTTGATCGGA 60.550 43.478 0.00 0.00 0.00 4.55
414 433 4.158394 ACACAATTTTGATCGGATCCCAAG 59.842 41.667 15.06 3.69 0.00 3.61
425 450 2.172717 CGGATCCCAAGGGTGACTATTT 59.827 50.000 6.06 0.00 36.47 1.40
426 451 3.555966 GGATCCCAAGGGTGACTATTTG 58.444 50.000 0.00 0.00 36.47 2.32
434 459 5.221303 CCAAGGGTGACTATTTGGCATAATG 60.221 44.000 0.00 0.00 35.31 1.90
446 471 0.311790 GCATAATGTGATGCCCGTGG 59.688 55.000 0.00 0.00 45.41 4.94
465 491 1.922545 GGCACACGTCGTAAATAGGAC 59.077 52.381 0.00 3.74 37.64 3.85
471 498 4.082625 ACACGTCGTAAATAGGACATGACA 60.083 41.667 14.02 0.00 36.69 3.58
475 502 6.127925 ACGTCGTAAATAGGACATGACAAGTA 60.128 38.462 0.00 0.00 40.15 2.24
476 503 6.414109 CGTCGTAAATAGGACATGACAAGTAG 59.586 42.308 0.00 0.00 40.15 2.57
478 505 6.040247 CGTAAATAGGACATGACAAGTAGCA 58.960 40.000 0.00 0.00 0.00 3.49
479 506 6.019801 CGTAAATAGGACATGACAAGTAGCAC 60.020 42.308 0.00 0.00 0.00 4.40
480 507 2.370281 AGGACATGACAAGTAGCACG 57.630 50.000 0.00 0.00 0.00 5.34
483 510 2.404215 GACATGACAAGTAGCACGTGT 58.596 47.619 18.38 6.65 43.23 4.49
484 511 3.571571 GACATGACAAGTAGCACGTGTA 58.428 45.455 18.38 5.61 40.74 2.90
485 512 3.314553 ACATGACAAGTAGCACGTGTAC 58.685 45.455 18.38 16.86 40.74 2.90
486 513 3.005472 ACATGACAAGTAGCACGTGTACT 59.995 43.478 18.38 18.68 40.74 2.73
498 531 4.630069 AGCACGTGTACTTATCAATCAACC 59.370 41.667 18.38 0.00 0.00 3.77
523 556 3.469008 TTATAGCTACGGCAACATGCT 57.531 42.857 0.00 0.00 44.28 3.79
533 566 0.802222 GCAACATGCTGCTGATGCTG 60.802 55.000 13.83 11.09 40.57 4.41
551 584 0.038709 TGCGGCAATTAACCTGCAAC 60.039 50.000 0.00 5.27 41.78 4.17
555 588 2.668279 CGGCAATTAACCTGCAACACTC 60.668 50.000 12.18 0.00 41.78 3.51
560 593 2.831685 TAACCTGCAACACTCGATGT 57.168 45.000 0.00 0.00 46.42 3.06
654 1006 5.478233 TCGCACAATTTCGCTACAATAAT 57.522 34.783 0.00 0.00 0.00 1.28
667 1019 8.401046 TCGCTACAATAATTTTTGCAATAACC 57.599 30.769 0.00 0.00 0.00 2.85
669 1021 8.816144 CGCTACAATAATTTTTGCAATAACCAT 58.184 29.630 0.00 0.00 0.00 3.55
695 1057 4.688879 CGAAAATTCACTAGCTGGTGTGTA 59.311 41.667 27.01 15.39 38.28 2.90
980 1376 9.801873 CCTCTAAGAAAGAAAACAAACAATTGA 57.198 29.630 13.59 0.00 35.36 2.57
1028 1429 0.107361 ATTTGCCGGGTACTACCAGC 60.107 55.000 2.18 9.56 41.02 4.85
1097 1501 1.891150 TGACGGTAAACTCACTCTCCC 59.109 52.381 0.00 0.00 0.00 4.30
1241 1645 3.204827 CAGCAATTCCTCGGGCCG 61.205 66.667 22.51 22.51 0.00 6.13
1277 1686 3.286751 CGGTGGGTGTGGCTTGTG 61.287 66.667 0.00 0.00 0.00 3.33
1306 1715 1.089920 CCTTGACCCTGCAATCTTCG 58.910 55.000 0.00 0.00 0.00 3.79
1324 1733 1.216710 GACCTCACCTCGCTCCAAG 59.783 63.158 0.00 0.00 0.00 3.61
1390 1799 1.470098 CAAATGGGTTTGAGAGGCTCG 59.530 52.381 9.22 0.00 46.03 5.03
1392 1801 1.557269 ATGGGTTTGAGAGGCTCGCT 61.557 55.000 19.04 0.00 32.35 4.93
1429 1838 2.035632 ACCTCTCCTATTCAGGCTTCG 58.964 52.381 0.00 0.00 42.30 3.79
1430 1839 2.035632 CCTCTCCTATTCAGGCTTCGT 58.964 52.381 0.00 0.00 42.30 3.85
1490 1899 7.996758 ACCTTATCTCCTTGGATCTTTCTAA 57.003 36.000 0.00 0.00 0.00 2.10
1501 1910 9.853177 CCTTGGATCTTTCTAATAACTATGGTT 57.147 33.333 0.00 0.00 39.26 3.67
1505 1914 7.603024 GGATCTTTCTAATAACTATGGTTCCGG 59.397 40.741 0.00 0.00 36.92 5.14
1509 1918 6.165700 TCTAATAACTATGGTTCCGGTTCC 57.834 41.667 0.00 6.00 36.92 3.62
1512 1921 0.822164 ACTATGGTTCCGGTTCCGAG 59.178 55.000 13.08 9.18 0.00 4.63
1519 1928 1.066358 GTTCCGGTTCCGAGGATTCTT 60.066 52.381 13.08 0.00 36.28 2.52
1525 1934 3.998341 CGGTTCCGAGGATTCTTTTTGTA 59.002 43.478 5.19 0.00 0.00 2.41
1532 1941 4.396166 CGAGGATTCTTTTTGTAGCCATGT 59.604 41.667 0.00 0.00 0.00 3.21
1536 1945 6.719370 AGGATTCTTTTTGTAGCCATGTTACA 59.281 34.615 3.84 3.84 0.00 2.41
1544 1953 4.215908 TGTAGCCATGTTACAAAAACCCA 58.784 39.130 5.18 0.00 0.00 4.51
1571 1985 0.832135 TTTCAGACCGAGCTGGAGGT 60.832 55.000 8.91 6.98 44.64 3.85
1574 1988 3.076940 TCAGACCGAGCTGGAGGTACT 62.077 57.143 8.91 4.63 41.51 2.73
1596 2010 5.012561 ACTGAACTTTGAGATCTTAGTGGCT 59.987 40.000 0.00 0.00 0.00 4.75
1712 2135 4.281182 TCTCCGAGTTCTTAGCTTGAGTTT 59.719 41.667 0.00 0.00 0.00 2.66
1719 2142 4.568152 TCTTAGCTTGAGTTTTTGTGGC 57.432 40.909 0.00 0.00 0.00 5.01
1750 2173 3.164268 CCTATCTGTCCATCCCTCTCAG 58.836 54.545 0.00 0.00 0.00 3.35
1767 2190 0.827368 CAGCCCTCCACTCTCTAACC 59.173 60.000 0.00 0.00 0.00 2.85
1785 2208 6.359804 TCTAACCATGATCAATCTTGAAGGG 58.640 40.000 0.00 0.00 41.13 3.95
1814 2246 4.721776 TGATATACCTGCTCCTTTTCCAGT 59.278 41.667 0.00 0.00 0.00 4.00
1846 2278 8.859090 TCATGGATTTTCTCAATTTAAGTGTGT 58.141 29.630 0.00 0.00 0.00 3.72
1904 2336 3.489398 CCTCGTAGAACCTTCCAATCGAG 60.489 52.174 0.00 0.00 41.68 4.04
1931 2364 7.166167 ACACTACGGTTCTTGATTTATCCTTT 58.834 34.615 0.00 0.00 0.00 3.11
1935 2368 7.068692 ACGGTTCTTGATTTATCCTTTAACG 57.931 36.000 0.00 0.00 0.00 3.18
2012 2445 4.209538 TGATGCTAGATGGGACCAATTTG 58.790 43.478 0.00 0.00 0.00 2.32
2119 2561 5.789521 TCAATCTTCACTCGGTATTCACAA 58.210 37.500 0.00 0.00 0.00 3.33
2150 2592 1.625315 CATCTGGAACTCACCCTGACA 59.375 52.381 0.00 0.00 35.04 3.58
2222 2664 3.817647 AGAACTTGGCAAGCTTAGAACTG 59.182 43.478 26.45 0.55 0.00 3.16
2223 2665 3.492102 ACTTGGCAAGCTTAGAACTGA 57.508 42.857 26.45 0.00 0.00 3.41
2224 2666 3.406764 ACTTGGCAAGCTTAGAACTGAG 58.593 45.455 26.45 0.00 0.00 3.35
2245 2693 4.171234 AGAGGATGGAACTTCTCTTGGAA 58.829 43.478 0.00 0.00 33.28 3.53
2261 2709 9.627123 TTCTCTTGGAAATCTTTTTCTTCAGTA 57.373 29.630 0.00 0.00 40.91 2.74
2306 2754 3.941483 GCCTGTCAATGTATTACTGCAGT 59.059 43.478 25.12 25.12 0.00 4.40
2367 2815 7.597386 AGTAAATTTGAGAAGCTTGGTGATTC 58.403 34.615 2.10 0.00 41.04 2.52
2573 3048 5.045869 TGGCAACCTTAGTAGCTTGATAAGT 60.046 40.000 0.00 0.00 0.00 2.24
2940 3421 6.818644 ACACACCATCTTTCCATATATATCGC 59.181 38.462 0.00 0.00 0.00 4.58
2941 3422 6.818142 CACACCATCTTTCCATATATATCGCA 59.182 38.462 0.00 0.00 0.00 5.10
2942 3423 7.334171 CACACCATCTTTCCATATATATCGCAA 59.666 37.037 0.00 0.00 0.00 4.85
2943 3424 7.550551 ACACCATCTTTCCATATATATCGCAAG 59.449 37.037 0.00 0.00 0.00 4.01
2954 3435 4.370182 TCGCAAGATTCGCAACCA 57.630 50.000 0.00 0.00 45.01 3.67
3075 3558 7.231317 AGGAGACAAATAAATTTGACTGAGCAA 59.769 33.333 19.97 0.00 46.89 3.91
3085 3575 8.922058 AAATTTGACTGAGCAATAATAAGCAG 57.078 30.769 0.00 0.00 0.00 4.24
3093 3583 3.825014 AGCAATAATAAGCAGGCATCCAG 59.175 43.478 0.00 0.00 0.00 3.86
3124 3614 7.607991 GGTATGATGGTAATCTTCCGATCAATT 59.392 37.037 0.00 0.00 33.61 2.32
3139 3629 9.830975 TTCCGATCAATTATACAGAATCAAGAA 57.169 29.630 0.00 0.00 0.00 2.52
3155 3645 4.487804 TCAAGAATAGCTAGAGGAGGCAT 58.512 43.478 0.00 0.00 0.00 4.40
3192 3842 9.605275 CTTCTGATAAGATAATTTCTGTGTCCA 57.395 33.333 0.00 0.00 33.93 4.02
3214 3864 2.826428 TGTGAGATAGGAATTCAGCGC 58.174 47.619 7.93 0.00 0.00 5.92
3237 3888 4.046462 GGAAACGCCACTCTTTAAAAACC 58.954 43.478 0.00 0.00 36.34 3.27
3307 5486 5.649831 ACCTGAAATTCAATTAGACTCCTGC 59.350 40.000 0.00 0.00 0.00 4.85
3328 5507 4.830046 TGCTGTTTGCCCTTAGTTTCATTA 59.170 37.500 0.00 0.00 42.00 1.90
3334 5513 7.172361 TGTTTGCCCTTAGTTTCATTATTTTGC 59.828 33.333 0.00 0.00 0.00 3.68
3360 5539 5.875359 AGGAACTTGTTCTCCATCGTATTTC 59.125 40.000 12.44 0.00 27.25 2.17
3387 5566 9.184523 CATGTTATTTTGAAGAGGGGTTGTATA 57.815 33.333 0.00 0.00 0.00 1.47
3396 5575 8.331931 TGAAGAGGGGTTGTATAGTCATTTAT 57.668 34.615 0.00 0.00 0.00 1.40
3433 5615 7.731054 TGGTTTTGCAACTTAATTCCTATGTT 58.269 30.769 0.00 0.00 32.90 2.71
3434 5616 8.861086 TGGTTTTGCAACTTAATTCCTATGTTA 58.139 29.630 0.00 0.00 32.90 2.41
3436 5618 9.908152 GTTTTGCAACTTAATTCCTATGTTAGT 57.092 29.630 0.00 0.00 0.00 2.24
3445 5627 3.520290 TCCTATGTTAGTCAAGTGGCG 57.480 47.619 0.00 0.00 0.00 5.69
3448 5630 0.324943 ATGTTAGTCAAGTGGCGGCT 59.675 50.000 11.43 0.00 0.00 5.52
3530 5713 6.463995 TTGGAAAATGCACTCAAGTAAGTT 57.536 33.333 0.00 0.00 0.00 2.66
3531 5714 6.463995 TGGAAAATGCACTCAAGTAAGTTT 57.536 33.333 0.00 0.00 0.00 2.66
3551 5734 4.607293 TTTGAGTGCACAGACTATGTCT 57.393 40.909 21.04 0.00 44.44 3.41
3667 5850 9.838339 ATTAAATCCTCTCAGGTTGTTATAGTG 57.162 33.333 0.00 0.00 36.53 2.74
3668 5851 6.875972 AATCCTCTCAGGTTGTTATAGTGT 57.124 37.500 0.00 0.00 36.53 3.55
3669 5852 7.973048 AATCCTCTCAGGTTGTTATAGTGTA 57.027 36.000 0.00 0.00 36.53 2.90
3670 5853 7.589958 ATCCTCTCAGGTTGTTATAGTGTAG 57.410 40.000 0.00 0.00 36.53 2.74
3671 5854 5.892119 TCCTCTCAGGTTGTTATAGTGTAGG 59.108 44.000 0.00 0.00 36.53 3.18
3672 5855 5.452077 CCTCTCAGGTTGTTATAGTGTAGGC 60.452 48.000 0.00 0.00 0.00 3.93
3673 5856 5.020795 TCTCAGGTTGTTATAGTGTAGGCA 58.979 41.667 0.00 0.00 0.00 4.75
3674 5857 5.127194 TCTCAGGTTGTTATAGTGTAGGCAG 59.873 44.000 0.00 0.00 0.00 4.85
3675 5858 3.871594 CAGGTTGTTATAGTGTAGGCAGC 59.128 47.826 0.00 0.00 0.00 5.25
3676 5859 3.517901 AGGTTGTTATAGTGTAGGCAGCA 59.482 43.478 0.00 0.00 0.00 4.41
3677 5860 4.164221 AGGTTGTTATAGTGTAGGCAGCAT 59.836 41.667 0.00 0.00 0.00 3.79
3678 5861 4.273480 GGTTGTTATAGTGTAGGCAGCATG 59.727 45.833 0.00 0.00 40.87 4.06
3679 5862 4.753516 TGTTATAGTGTAGGCAGCATGT 57.246 40.909 0.00 0.00 39.31 3.21
3680 5863 4.693283 TGTTATAGTGTAGGCAGCATGTC 58.307 43.478 0.00 0.00 44.67 3.06
3681 5864 2.918712 ATAGTGTAGGCAGCATGTCC 57.081 50.000 0.00 0.00 46.31 4.02
3682 5865 0.830648 TAGTGTAGGCAGCATGTCCC 59.169 55.000 0.00 0.00 46.31 4.46
3683 5866 1.815421 GTGTAGGCAGCATGTCCCG 60.815 63.158 0.00 0.00 46.31 5.14
3684 5867 1.987306 TGTAGGCAGCATGTCCCGA 60.987 57.895 0.00 0.00 46.31 5.14
3685 5868 1.227380 GTAGGCAGCATGTCCCGAG 60.227 63.158 0.00 0.00 46.31 4.63
3686 5869 2.434843 TAGGCAGCATGTCCCGAGG 61.435 63.158 0.00 0.00 46.31 4.63
3687 5870 4.101448 GGCAGCATGTCCCGAGGT 62.101 66.667 0.00 0.00 39.31 3.85
3688 5871 2.045926 GCAGCATGTCCCGAGGTT 60.046 61.111 0.00 0.00 39.31 3.50
3689 5872 2.109126 GCAGCATGTCCCGAGGTTC 61.109 63.158 0.00 0.00 39.31 3.62
3690 5873 1.296392 CAGCATGTCCCGAGGTTCA 59.704 57.895 0.00 0.00 0.00 3.18
3691 5874 0.321564 CAGCATGTCCCGAGGTTCAA 60.322 55.000 0.00 0.00 0.00 2.69
3692 5875 0.620556 AGCATGTCCCGAGGTTCAAT 59.379 50.000 0.00 0.00 0.00 2.57
3693 5876 1.017387 GCATGTCCCGAGGTTCAATC 58.983 55.000 0.00 0.00 0.00 2.67
3694 5877 1.407437 GCATGTCCCGAGGTTCAATCT 60.407 52.381 0.00 0.00 0.00 2.40
3695 5878 2.555199 CATGTCCCGAGGTTCAATCTC 58.445 52.381 0.00 0.00 0.00 2.75
3696 5879 1.938585 TGTCCCGAGGTTCAATCTCT 58.061 50.000 0.00 0.00 0.00 3.10
3697 5880 2.257207 TGTCCCGAGGTTCAATCTCTT 58.743 47.619 0.00 0.00 0.00 2.85
3698 5881 2.637872 TGTCCCGAGGTTCAATCTCTTT 59.362 45.455 0.00 0.00 0.00 2.52
3699 5882 3.003480 GTCCCGAGGTTCAATCTCTTTG 58.997 50.000 0.00 0.00 36.61 2.77
3700 5883 1.740025 CCCGAGGTTCAATCTCTTTGC 59.260 52.381 0.00 0.00 35.16 3.68
3701 5884 2.616510 CCCGAGGTTCAATCTCTTTGCT 60.617 50.000 0.00 0.00 35.16 3.91
3702 5885 2.675348 CCGAGGTTCAATCTCTTTGCTC 59.325 50.000 0.00 0.00 35.16 4.26
3703 5886 3.329386 CGAGGTTCAATCTCTTTGCTCA 58.671 45.455 0.00 0.00 35.16 4.26
3704 5887 3.937706 CGAGGTTCAATCTCTTTGCTCAT 59.062 43.478 0.00 0.00 35.16 2.90
3705 5888 4.201792 CGAGGTTCAATCTCTTTGCTCATG 60.202 45.833 0.00 0.00 35.16 3.07
3706 5889 4.015084 AGGTTCAATCTCTTTGCTCATGG 58.985 43.478 0.00 0.00 35.16 3.66
3707 5890 3.129988 GGTTCAATCTCTTTGCTCATGGG 59.870 47.826 0.00 0.00 35.16 4.00
3708 5891 4.012374 GTTCAATCTCTTTGCTCATGGGA 58.988 43.478 0.00 0.00 35.16 4.37
3709 5892 4.515028 TCAATCTCTTTGCTCATGGGAT 57.485 40.909 0.00 0.00 35.16 3.85
3710 5893 4.204799 TCAATCTCTTTGCTCATGGGATG 58.795 43.478 0.00 0.00 35.16 3.51
3711 5894 3.947612 ATCTCTTTGCTCATGGGATGT 57.052 42.857 0.00 0.00 0.00 3.06
3712 5895 2.995283 TCTCTTTGCTCATGGGATGTG 58.005 47.619 0.00 0.00 0.00 3.21
3713 5896 2.306805 TCTCTTTGCTCATGGGATGTGT 59.693 45.455 0.00 0.00 0.00 3.72
3714 5897 3.087031 CTCTTTGCTCATGGGATGTGTT 58.913 45.455 0.00 0.00 0.00 3.32
3715 5898 3.499338 TCTTTGCTCATGGGATGTGTTT 58.501 40.909 0.00 0.00 0.00 2.83
3716 5899 3.507233 TCTTTGCTCATGGGATGTGTTTC 59.493 43.478 0.00 0.00 0.00 2.78
3717 5900 1.452110 TGCTCATGGGATGTGTTTCG 58.548 50.000 0.00 0.00 0.00 3.46
3718 5901 1.003003 TGCTCATGGGATGTGTTTCGA 59.997 47.619 0.00 0.00 0.00 3.71
3719 5902 2.083774 GCTCATGGGATGTGTTTCGAA 58.916 47.619 0.00 0.00 0.00 3.71
3720 5903 2.684881 GCTCATGGGATGTGTTTCGAAT 59.315 45.455 0.00 0.00 0.00 3.34
3721 5904 3.242870 GCTCATGGGATGTGTTTCGAATC 60.243 47.826 0.00 0.00 0.00 2.52
3722 5905 4.194640 CTCATGGGATGTGTTTCGAATCT 58.805 43.478 0.00 0.00 0.00 2.40
3723 5906 4.588899 TCATGGGATGTGTTTCGAATCTT 58.411 39.130 0.00 0.00 0.00 2.40
3724 5907 4.395854 TCATGGGATGTGTTTCGAATCTTG 59.604 41.667 0.00 0.00 0.00 3.02
3725 5908 3.081061 TGGGATGTGTTTCGAATCTTGG 58.919 45.455 0.00 0.00 0.00 3.61
3726 5909 3.244735 TGGGATGTGTTTCGAATCTTGGA 60.245 43.478 0.00 0.00 0.00 3.53
3727 5910 3.947834 GGGATGTGTTTCGAATCTTGGAT 59.052 43.478 0.00 0.00 0.00 3.41
3728 5911 4.201950 GGGATGTGTTTCGAATCTTGGATG 60.202 45.833 0.00 0.00 0.00 3.51
3729 5912 3.829886 TGTGTTTCGAATCTTGGATGC 57.170 42.857 0.00 0.00 0.00 3.91
3730 5913 2.487762 TGTGTTTCGAATCTTGGATGCC 59.512 45.455 0.00 0.00 0.00 4.40
3731 5914 1.737236 TGTTTCGAATCTTGGATGCCG 59.263 47.619 0.00 0.00 0.00 5.69
3732 5915 1.737793 GTTTCGAATCTTGGATGCCGT 59.262 47.619 0.00 0.00 0.00 5.68
3733 5916 2.107950 TTCGAATCTTGGATGCCGTT 57.892 45.000 0.00 0.00 0.00 4.44
3734 5917 1.368641 TCGAATCTTGGATGCCGTTG 58.631 50.000 0.00 0.00 0.00 4.10
3735 5918 0.248215 CGAATCTTGGATGCCGTTGC 60.248 55.000 0.00 0.00 38.26 4.17
3736 5919 1.098050 GAATCTTGGATGCCGTTGCT 58.902 50.000 0.00 0.00 38.71 3.91
3737 5920 1.064654 GAATCTTGGATGCCGTTGCTC 59.935 52.381 0.00 0.00 38.71 4.26
3738 5921 0.749454 ATCTTGGATGCCGTTGCTCC 60.749 55.000 0.00 0.00 38.71 4.70
3739 5922 1.377725 CTTGGATGCCGTTGCTCCT 60.378 57.895 0.00 0.00 36.40 3.69
3740 5923 1.651240 CTTGGATGCCGTTGCTCCTG 61.651 60.000 0.00 0.00 36.40 3.86
3741 5924 2.123248 TTGGATGCCGTTGCTCCTGA 62.123 55.000 0.00 0.00 36.40 3.86
3742 5925 1.153086 GGATGCCGTTGCTCCTGAT 60.153 57.895 0.00 0.00 38.71 2.90
3743 5926 0.749454 GGATGCCGTTGCTCCTGATT 60.749 55.000 0.00 0.00 38.71 2.57
3744 5927 0.379669 GATGCCGTTGCTCCTGATTG 59.620 55.000 0.00 0.00 38.71 2.67
3745 5928 0.035152 ATGCCGTTGCTCCTGATTGA 60.035 50.000 0.00 0.00 38.71 2.57
3746 5929 0.035152 TGCCGTTGCTCCTGATTGAT 60.035 50.000 0.00 0.00 38.71 2.57
3747 5930 1.209261 TGCCGTTGCTCCTGATTGATA 59.791 47.619 0.00 0.00 38.71 2.15
3748 5931 2.288666 GCCGTTGCTCCTGATTGATAA 58.711 47.619 0.00 0.00 33.53 1.75
3749 5932 2.289002 GCCGTTGCTCCTGATTGATAAG 59.711 50.000 0.00 0.00 33.53 1.73
3750 5933 2.874701 CCGTTGCTCCTGATTGATAAGG 59.125 50.000 0.00 0.00 34.65 2.69
3751 5934 2.874701 CGTTGCTCCTGATTGATAAGGG 59.125 50.000 0.00 0.00 34.08 3.95
3752 5935 2.620585 GTTGCTCCTGATTGATAAGGGC 59.379 50.000 0.00 0.00 34.08 5.19
3753 5936 1.143684 TGCTCCTGATTGATAAGGGCC 59.856 52.381 0.00 0.00 34.08 5.80
3754 5937 1.143684 GCTCCTGATTGATAAGGGCCA 59.856 52.381 6.18 0.00 34.08 5.36
3755 5938 2.856222 CTCCTGATTGATAAGGGCCAC 58.144 52.381 6.18 0.00 34.08 5.01
3756 5939 1.494721 TCCTGATTGATAAGGGCCACC 59.505 52.381 6.18 0.00 34.08 4.61
3769 5952 1.070914 GGGCCACCTTCTCATACTAGC 59.929 57.143 4.39 0.00 0.00 3.42
3770 5953 1.269831 GGCCACCTTCTCATACTAGCG 60.270 57.143 0.00 0.00 0.00 4.26
3771 5954 1.870167 GCCACCTTCTCATACTAGCGC 60.870 57.143 0.00 0.00 0.00 5.92
3772 5955 1.269831 CCACCTTCTCATACTAGCGCC 60.270 57.143 2.29 0.00 0.00 6.53
3773 5956 1.041437 ACCTTCTCATACTAGCGCCC 58.959 55.000 2.29 0.00 0.00 6.13
3774 5957 1.333177 CCTTCTCATACTAGCGCCCT 58.667 55.000 2.29 0.00 0.00 5.19
3775 5958 2.158505 ACCTTCTCATACTAGCGCCCTA 60.159 50.000 2.29 0.00 0.00 3.53
3776 5959 2.229302 CCTTCTCATACTAGCGCCCTAC 59.771 54.545 2.29 0.00 0.00 3.18
3777 5960 2.953284 TCTCATACTAGCGCCCTACT 57.047 50.000 2.29 0.00 0.00 2.57
3778 5961 3.225177 TCTCATACTAGCGCCCTACTT 57.775 47.619 2.29 0.00 0.00 2.24
3779 5962 3.147629 TCTCATACTAGCGCCCTACTTC 58.852 50.000 2.29 0.00 0.00 3.01
3780 5963 1.878088 TCATACTAGCGCCCTACTTCG 59.122 52.381 2.29 0.00 0.00 3.79
3781 5964 1.607628 CATACTAGCGCCCTACTTCGT 59.392 52.381 2.29 0.00 0.00 3.85
3782 5965 1.755179 TACTAGCGCCCTACTTCGTT 58.245 50.000 2.29 0.00 0.00 3.85
3783 5966 1.755179 ACTAGCGCCCTACTTCGTTA 58.245 50.000 2.29 0.00 0.00 3.18
3784 5967 1.674962 ACTAGCGCCCTACTTCGTTAG 59.325 52.381 2.29 0.00 42.50 2.34
3785 5968 1.674962 CTAGCGCCCTACTTCGTTAGT 59.325 52.381 2.29 0.00 41.04 2.24
3786 5969 0.172803 AGCGCCCTACTTCGTTAGTG 59.827 55.000 2.29 0.00 37.73 2.74
3787 5970 0.108945 GCGCCCTACTTCGTTAGTGT 60.109 55.000 0.00 0.00 37.73 3.55
3788 5971 1.133025 GCGCCCTACTTCGTTAGTGTA 59.867 52.381 0.00 0.00 37.73 2.90
3789 5972 2.793933 GCGCCCTACTTCGTTAGTGTAG 60.794 54.545 0.00 0.00 37.73 2.74
3793 5976 4.030134 CCTACTTCGTTAGTGTAGGCAG 57.970 50.000 5.62 0.00 44.29 4.85
3794 5977 2.365408 ACTTCGTTAGTGTAGGCAGC 57.635 50.000 0.00 0.00 35.19 5.25
3795 5978 1.616865 ACTTCGTTAGTGTAGGCAGCA 59.383 47.619 0.00 0.00 35.19 4.41
3796 5979 2.233922 ACTTCGTTAGTGTAGGCAGCAT 59.766 45.455 0.00 0.00 35.19 3.79
3797 5980 2.293677 TCGTTAGTGTAGGCAGCATG 57.706 50.000 0.00 0.00 40.87 4.06
3798 5981 1.548719 TCGTTAGTGTAGGCAGCATGT 59.451 47.619 0.00 0.00 39.31 3.21
3799 5982 1.927174 CGTTAGTGTAGGCAGCATGTC 59.073 52.381 0.00 0.00 44.67 3.06
3800 5983 2.280628 GTTAGTGTAGGCAGCATGTCC 58.719 52.381 0.00 0.00 46.31 4.02
3801 5984 0.830648 TAGTGTAGGCAGCATGTCCC 59.169 55.000 0.00 0.00 46.31 4.46
3802 5985 1.815421 GTGTAGGCAGCATGTCCCG 60.815 63.158 0.00 0.00 46.31 5.14
3803 5986 1.987306 TGTAGGCAGCATGTCCCGA 60.987 57.895 0.00 0.00 46.31 5.14
3804 5987 1.227380 GTAGGCAGCATGTCCCGAG 60.227 63.158 0.00 0.00 46.31 4.63
3805 5988 2.434843 TAGGCAGCATGTCCCGAGG 61.435 63.158 0.00 0.00 46.31 4.63
3806 5989 4.101448 GGCAGCATGTCCCGAGGT 62.101 66.667 0.00 0.00 39.31 3.85
3807 5990 2.045926 GCAGCATGTCCCGAGGTT 60.046 61.111 0.00 0.00 39.31 3.50
3808 5991 2.109126 GCAGCATGTCCCGAGGTTC 61.109 63.158 0.00 0.00 39.31 3.62
3809 5992 1.296392 CAGCATGTCCCGAGGTTCA 59.704 57.895 0.00 0.00 0.00 3.18
3810 5993 0.321564 CAGCATGTCCCGAGGTTCAA 60.322 55.000 0.00 0.00 0.00 2.69
3811 5994 0.620556 AGCATGTCCCGAGGTTCAAT 59.379 50.000 0.00 0.00 0.00 2.57
3812 5995 1.017387 GCATGTCCCGAGGTTCAATC 58.983 55.000 0.00 0.00 0.00 2.67
3813 5996 1.407437 GCATGTCCCGAGGTTCAATCT 60.407 52.381 0.00 0.00 0.00 2.40
3814 5997 2.555199 CATGTCCCGAGGTTCAATCTC 58.445 52.381 0.00 0.00 0.00 2.75
3815 5998 1.938585 TGTCCCGAGGTTCAATCTCT 58.061 50.000 0.00 0.00 0.00 3.10
3816 5999 2.257207 TGTCCCGAGGTTCAATCTCTT 58.743 47.619 0.00 0.00 0.00 2.85
3817 6000 2.637872 TGTCCCGAGGTTCAATCTCTTT 59.362 45.455 0.00 0.00 0.00 2.52
3818 6001 3.003480 GTCCCGAGGTTCAATCTCTTTG 58.997 50.000 0.00 0.00 36.61 2.77
3819 6002 1.740025 CCCGAGGTTCAATCTCTTTGC 59.260 52.381 0.00 0.00 35.16 3.68
3820 6003 2.616510 CCCGAGGTTCAATCTCTTTGCT 60.617 50.000 0.00 0.00 35.16 3.91
3821 6004 2.675348 CCGAGGTTCAATCTCTTTGCTC 59.325 50.000 0.00 0.00 35.16 4.26
3822 6005 3.329386 CGAGGTTCAATCTCTTTGCTCA 58.671 45.455 0.00 0.00 35.16 4.26
3823 6006 3.937706 CGAGGTTCAATCTCTTTGCTCAT 59.062 43.478 0.00 0.00 35.16 2.90
3824 6007 4.394300 CGAGGTTCAATCTCTTTGCTCATT 59.606 41.667 0.00 0.00 35.16 2.57
3825 6008 5.106396 CGAGGTTCAATCTCTTTGCTCATTT 60.106 40.000 0.00 0.00 35.16 2.32
3826 6009 6.022163 AGGTTCAATCTCTTTGCTCATTTG 57.978 37.500 0.00 0.00 35.16 2.32
3827 6010 5.047519 AGGTTCAATCTCTTTGCTCATTTGG 60.048 40.000 0.00 0.00 35.16 3.28
3828 6011 5.279156 GGTTCAATCTCTTTGCTCATTTGGT 60.279 40.000 0.00 0.00 35.16 3.67
3829 6012 5.381174 TCAATCTCTTTGCTCATTTGGTG 57.619 39.130 0.00 0.00 35.16 4.17
3830 6013 4.828939 TCAATCTCTTTGCTCATTTGGTGT 59.171 37.500 0.00 0.00 35.16 4.16
3831 6014 6.003326 TCAATCTCTTTGCTCATTTGGTGTA 58.997 36.000 0.00 0.00 35.16 2.90
3832 6015 6.149973 TCAATCTCTTTGCTCATTTGGTGTAG 59.850 38.462 0.00 0.00 35.16 2.74
3833 6016 4.973168 TCTCTTTGCTCATTTGGTGTAGT 58.027 39.130 0.00 0.00 0.00 2.73
3834 6017 4.756642 TCTCTTTGCTCATTTGGTGTAGTG 59.243 41.667 0.00 0.00 0.00 2.74
3835 6018 4.460263 TCTTTGCTCATTTGGTGTAGTGT 58.540 39.130 0.00 0.00 0.00 3.55
3836 6019 4.887071 TCTTTGCTCATTTGGTGTAGTGTT 59.113 37.500 0.00 0.00 0.00 3.32
3837 6020 4.829064 TTGCTCATTTGGTGTAGTGTTC 57.171 40.909 0.00 0.00 0.00 3.18
3838 6021 4.085357 TGCTCATTTGGTGTAGTGTTCT 57.915 40.909 0.00 0.00 0.00 3.01
3839 6022 5.222079 TGCTCATTTGGTGTAGTGTTCTA 57.778 39.130 0.00 0.00 0.00 2.10
3840 6023 5.237815 TGCTCATTTGGTGTAGTGTTCTAG 58.762 41.667 0.00 0.00 0.00 2.43
3841 6024 5.011635 TGCTCATTTGGTGTAGTGTTCTAGA 59.988 40.000 0.00 0.00 0.00 2.43
3842 6025 5.348997 GCTCATTTGGTGTAGTGTTCTAGAC 59.651 44.000 0.00 0.00 38.98 2.59
3843 6026 6.665992 TCATTTGGTGTAGTGTTCTAGACT 57.334 37.500 0.00 0.00 39.44 3.24
3844 6027 7.062749 TCATTTGGTGTAGTGTTCTAGACTT 57.937 36.000 0.00 0.00 39.44 3.01
3845 6028 7.506114 TCATTTGGTGTAGTGTTCTAGACTTT 58.494 34.615 0.00 0.00 39.44 2.66
3846 6029 7.990886 TCATTTGGTGTAGTGTTCTAGACTTTT 59.009 33.333 0.00 0.00 39.44 2.27
3847 6030 8.621286 CATTTGGTGTAGTGTTCTAGACTTTTT 58.379 33.333 0.00 0.00 39.44 1.94
3848 6031 7.548196 TTGGTGTAGTGTTCTAGACTTTTTG 57.452 36.000 0.00 0.00 39.44 2.44
3849 6032 6.880484 TGGTGTAGTGTTCTAGACTTTTTGA 58.120 36.000 0.00 0.00 39.44 2.69
3850 6033 7.506114 TGGTGTAGTGTTCTAGACTTTTTGAT 58.494 34.615 0.00 0.00 39.44 2.57
3851 6034 7.441157 TGGTGTAGTGTTCTAGACTTTTTGATG 59.559 37.037 0.00 0.00 39.44 3.07
3852 6035 7.656137 GGTGTAGTGTTCTAGACTTTTTGATGA 59.344 37.037 0.00 0.00 39.44 2.92
3853 6036 8.488764 GTGTAGTGTTCTAGACTTTTTGATGAC 58.511 37.037 0.00 0.00 37.43 3.06
3854 6037 8.201464 TGTAGTGTTCTAGACTTTTTGATGACA 58.799 33.333 0.00 0.00 0.00 3.58
3855 6038 9.209175 GTAGTGTTCTAGACTTTTTGATGACAT 57.791 33.333 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.710902 CGAGTCGGTCCATGGCTCA 61.711 63.158 6.96 0.00 0.00 4.26
69 70 0.463116 AAACAAACCAGTCGGCGACT 60.463 50.000 34.91 34.91 44.44 4.18
72 73 0.591236 CACAAACAAACCAGTCGGCG 60.591 55.000 0.00 0.00 34.57 6.46
78 79 6.636850 GCAGATAAGTAACACAAACAAACCAG 59.363 38.462 0.00 0.00 0.00 4.00
116 117 4.061596 GAGCACAAGAAGCTAGAAACTGT 58.938 43.478 0.00 0.00 43.58 3.55
149 150 7.119262 AGCACACATTTATAAGGTGAACAGTAC 59.881 37.037 20.00 0.00 45.40 2.73
150 151 7.165485 AGCACACATTTATAAGGTGAACAGTA 58.835 34.615 20.00 0.00 45.40 2.74
151 152 6.003950 AGCACACATTTATAAGGTGAACAGT 58.996 36.000 20.00 6.42 45.40 3.55
152 153 6.403636 GGAGCACACATTTATAAGGTGAACAG 60.404 42.308 20.00 11.03 45.40 3.16
153 154 5.414454 GGAGCACACATTTATAAGGTGAACA 59.586 40.000 20.00 0.00 45.40 3.18
155 156 4.947388 GGGAGCACACATTTATAAGGTGAA 59.053 41.667 20.00 0.00 45.40 3.18
156 157 4.227300 AGGGAGCACACATTTATAAGGTGA 59.773 41.667 20.00 0.00 45.40 4.02
158 159 4.227300 TGAGGGAGCACACATTTATAAGGT 59.773 41.667 0.00 0.00 0.00 3.50
159 160 4.780815 TGAGGGAGCACACATTTATAAGG 58.219 43.478 0.00 0.00 0.00 2.69
160 161 6.016777 GGAATGAGGGAGCACACATTTATAAG 60.017 42.308 0.00 0.00 33.92 1.73
161 162 5.827797 GGAATGAGGGAGCACACATTTATAA 59.172 40.000 0.00 0.00 33.92 0.98
244 245 3.369147 CGTCTACCAGTCAAAGAATGCAG 59.631 47.826 0.00 0.00 0.00 4.41
250 251 5.462530 TCAATTCGTCTACCAGTCAAAGA 57.537 39.130 0.00 0.00 0.00 2.52
327 338 5.648526 ACTTCTCTTGAGACGCTATGTAGAA 59.351 40.000 0.00 0.00 0.00 2.10
328 339 5.186942 ACTTCTCTTGAGACGCTATGTAGA 58.813 41.667 0.00 0.00 0.00 2.59
329 340 5.295787 AGACTTCTCTTGAGACGCTATGTAG 59.704 44.000 0.00 0.00 0.00 2.74
355 366 8.426489 GGATGGGTTCTACAGTACACATAATTA 58.574 37.037 3.99 0.00 39.14 1.40
357 368 6.385759 TGGATGGGTTCTACAGTACACATAAT 59.614 38.462 3.99 0.00 39.14 1.28
358 369 5.722441 TGGATGGGTTCTACAGTACACATAA 59.278 40.000 3.99 0.00 39.14 1.90
359 370 5.274015 TGGATGGGTTCTACAGTACACATA 58.726 41.667 3.99 0.00 39.14 2.29
361 372 3.512496 TGGATGGGTTCTACAGTACACA 58.488 45.455 0.00 0.00 33.35 3.72
362 373 4.546829 TTGGATGGGTTCTACAGTACAC 57.453 45.455 0.00 0.00 0.00 2.90
363 374 4.564821 GCTTTGGATGGGTTCTACAGTACA 60.565 45.833 0.00 0.00 0.00 2.90
364 375 3.939592 GCTTTGGATGGGTTCTACAGTAC 59.060 47.826 0.00 0.00 0.00 2.73
365 376 3.585289 TGCTTTGGATGGGTTCTACAGTA 59.415 43.478 0.00 0.00 0.00 2.74
366 377 2.375174 TGCTTTGGATGGGTTCTACAGT 59.625 45.455 0.00 0.00 0.00 3.55
370 381 2.107378 TGTGTGCTTTGGATGGGTTCTA 59.893 45.455 0.00 0.00 0.00 2.10
384 395 3.550639 CCGATCAAAATTGTGTGTGTGCT 60.551 43.478 0.00 0.00 0.00 4.40
385 396 2.725723 CCGATCAAAATTGTGTGTGTGC 59.274 45.455 0.00 0.00 0.00 4.57
392 403 4.440525 CCTTGGGATCCGATCAAAATTGTG 60.441 45.833 5.45 0.00 0.00 3.33
396 407 2.244769 ACCCTTGGGATCCGATCAAAAT 59.755 45.455 13.39 0.00 0.00 1.82
397 408 1.638589 ACCCTTGGGATCCGATCAAAA 59.361 47.619 13.39 3.30 0.00 2.44
398 409 1.064758 CACCCTTGGGATCCGATCAAA 60.065 52.381 13.39 3.62 0.00 2.69
399 410 0.546122 CACCCTTGGGATCCGATCAA 59.454 55.000 13.39 3.68 0.00 2.57
400 411 0.326143 TCACCCTTGGGATCCGATCA 60.326 55.000 13.39 0.00 0.00 2.92
401 412 0.106894 GTCACCCTTGGGATCCGATC 59.893 60.000 13.39 0.00 0.00 3.69
402 413 0.326618 AGTCACCCTTGGGATCCGAT 60.327 55.000 13.39 0.00 0.00 4.18
403 414 0.337082 TAGTCACCCTTGGGATCCGA 59.663 55.000 13.39 0.00 0.00 4.55
404 415 1.424638 ATAGTCACCCTTGGGATCCG 58.575 55.000 13.39 0.00 0.00 4.18
406 417 3.555966 CCAAATAGTCACCCTTGGGATC 58.444 50.000 13.39 2.47 35.65 3.36
407 418 2.358195 GCCAAATAGTCACCCTTGGGAT 60.358 50.000 13.39 0.00 39.01 3.85
414 433 4.887071 TCACATTATGCCAAATAGTCACCC 59.113 41.667 0.00 0.00 0.00 4.61
446 471 2.598589 TGTCCTATTTACGACGTGTGC 58.401 47.619 11.56 0.00 0.00 4.57
454 479 6.019801 GTGCTACTTGTCATGTCCTATTTACG 60.020 42.308 0.00 0.00 0.00 3.18
455 480 6.019801 CGTGCTACTTGTCATGTCCTATTTAC 60.020 42.308 0.00 0.00 0.00 2.01
457 482 4.870426 CGTGCTACTTGTCATGTCCTATTT 59.130 41.667 0.00 0.00 0.00 1.40
465 491 3.575630 AGTACACGTGCTACTTGTCATG 58.424 45.455 17.22 0.00 32.59 3.07
471 498 6.627243 TGATTGATAAGTACACGTGCTACTT 58.373 36.000 29.24 29.24 37.96 2.24
475 502 4.630069 GGTTGATTGATAAGTACACGTGCT 59.370 41.667 17.22 2.06 0.00 4.40
476 503 4.390603 TGGTTGATTGATAAGTACACGTGC 59.609 41.667 17.22 0.00 0.00 5.34
478 505 8.958119 AATATGGTTGATTGATAAGTACACGT 57.042 30.769 0.00 0.00 0.00 4.49
498 531 6.092670 AGCATGTTGCCGTAGCTATAAATATG 59.907 38.462 0.00 5.15 46.52 1.78
533 566 0.038709 TGTTGCAGGTTAATTGCCGC 60.039 50.000 11.08 0.24 40.81 6.53
535 568 2.668279 CGAGTGTTGCAGGTTAATTGCC 60.668 50.000 11.08 0.00 40.81 4.52
551 584 1.079819 AGTCGGCCAACATCGAGTG 60.080 57.895 2.24 0.00 37.62 3.51
555 588 2.047274 ACCAGTCGGCCAACATCG 60.047 61.111 2.24 0.00 34.57 3.84
577 929 3.254166 GCACTGGATTGTGATTTGTGAGT 59.746 43.478 0.00 0.00 40.12 3.41
667 1019 6.128282 ACACCAGCTAGTGAATTTTCGTAATG 60.128 38.462 19.53 0.00 40.34 1.90
669 1021 5.178623 CACACCAGCTAGTGAATTTTCGTAA 59.821 40.000 19.53 0.00 40.34 3.18
695 1057 0.107703 CCATACGTGCCACCAGACAT 60.108 55.000 0.00 0.00 0.00 3.06
717 1079 4.385825 TGTAGATTTTTCGCTTGGACAGT 58.614 39.130 0.00 0.00 0.00 3.55
901 1281 3.766051 GAGGGATTGTTCAGAGCCAAAAT 59.234 43.478 0.00 0.00 0.00 1.82
954 1350 9.801873 TCAATTGTTTGTTTTCTTTCTTAGAGG 57.198 29.630 5.13 0.00 32.62 3.69
977 1373 3.198635 TGGTCCCAAACAAAGCAAATCAA 59.801 39.130 0.00 0.00 0.00 2.57
980 1376 3.922171 TTGGTCCCAAACAAAGCAAAT 57.078 38.095 0.00 0.00 32.44 2.32
1028 1429 1.165907 TGCGAGCACCACAAGAAAGG 61.166 55.000 0.00 0.00 0.00 3.11
1060 1461 2.928396 ACCGTGGGAGTTGGAGGG 60.928 66.667 0.00 0.00 0.00 4.30
1097 1501 1.826921 GCCTGGTCTGGATGGCATG 60.827 63.158 3.81 0.00 44.34 4.06
1241 1645 1.261619 CGAGTTCCAAAGCAGTGACAC 59.738 52.381 0.00 0.00 0.00 3.67
1277 1686 1.602771 GGGTCAAGGCCCTGACTAC 59.397 63.158 29.13 20.10 44.33 2.73
1306 1715 1.216710 CTTGGAGCGAGGTGAGGTC 59.783 63.158 0.00 0.00 35.57 3.85
1324 1733 6.743575 ATTGTTCATGCTAAGGTCAAGTAC 57.256 37.500 0.00 0.00 0.00 2.73
1392 1801 1.070786 GTTGAGGTGGGTGAGCGAA 59.929 57.895 0.00 0.00 0.00 4.70
1437 1846 1.128200 TGCCGATGCCAGTAGGTATT 58.872 50.000 0.00 0.00 40.65 1.89
1490 1899 3.033184 TCGGAACCGGAACCATAGTTAT 58.967 45.455 9.46 0.00 40.25 1.89
1501 1910 1.272807 AAAGAATCCTCGGAACCGGA 58.727 50.000 9.46 4.20 40.25 5.14
1505 1914 4.142665 GGCTACAAAAAGAATCCTCGGAAC 60.143 45.833 0.00 0.00 0.00 3.62
1509 1918 4.396166 ACATGGCTACAAAAAGAATCCTCG 59.604 41.667 0.00 0.00 0.00 4.63
1512 1921 6.919721 TGTAACATGGCTACAAAAAGAATCC 58.080 36.000 7.30 0.00 0.00 3.01
1525 1934 3.900601 TCATGGGTTTTTGTAACATGGCT 59.099 39.130 0.00 0.00 39.39 4.75
1555 1964 0.681564 AGTACCTCCAGCTCGGTCTG 60.682 60.000 2.32 0.00 34.76 3.51
1557 1966 0.680280 TCAGTACCTCCAGCTCGGTC 60.680 60.000 2.32 0.00 34.76 4.79
1559 1968 0.173708 GTTCAGTACCTCCAGCTCGG 59.826 60.000 0.00 0.00 0.00 4.63
1561 1970 3.006967 TCAAAGTTCAGTACCTCCAGCTC 59.993 47.826 0.00 0.00 0.00 4.09
1562 1971 2.972713 TCAAAGTTCAGTACCTCCAGCT 59.027 45.455 0.00 0.00 0.00 4.24
1571 1985 6.211584 AGCCACTAAGATCTCAAAGTTCAGTA 59.788 38.462 0.00 0.00 0.00 2.74
1574 1988 5.489792 AGCCACTAAGATCTCAAAGTTCA 57.510 39.130 0.00 0.00 0.00 3.18
1719 2142 2.093537 GACAGATAGGGCCGCTGAGG 62.094 65.000 24.18 6.81 44.97 3.86
1728 2151 2.158249 TGAGAGGGATGGACAGATAGGG 60.158 54.545 0.00 0.00 0.00 3.53
1750 2173 1.139853 CATGGTTAGAGAGTGGAGGGC 59.860 57.143 0.00 0.00 0.00 5.19
1767 2190 6.770746 AAGTTCCCTTCAAGATTGATCATG 57.229 37.500 0.00 0.00 37.00 3.07
1785 2208 7.201741 GGAAAAGGAGCAGGTATATCAAAGTTC 60.202 40.741 0.00 0.00 0.00 3.01
1846 2278 2.151502 TTTGTCCCAGCAAGTTGGAA 57.848 45.000 4.75 0.00 40.87 3.53
1904 2336 6.817140 AGGATAAATCAAGAACCGTAGTGTTC 59.183 38.462 0.00 0.00 43.95 3.18
1931 2364 2.427453 GTGCCCTGAGAGATTCTCGTTA 59.573 50.000 8.01 0.00 46.25 3.18
1935 2368 2.836262 CATGTGCCCTGAGAGATTCTC 58.164 52.381 5.49 5.49 43.65 2.87
2012 2445 2.959030 AGAGCCTGTTTTTCCAAAGGAC 59.041 45.455 0.00 0.00 30.92 3.85
2150 2592 3.412386 CCCCAAATCTTTTGTCGAGTCT 58.588 45.455 0.00 0.00 0.00 3.24
2222 2664 3.772025 TCCAAGAGAAGTTCCATCCTCTC 59.228 47.826 0.00 0.00 35.16 3.20
2223 2665 3.796111 TCCAAGAGAAGTTCCATCCTCT 58.204 45.455 0.00 0.00 37.58 3.69
2224 2666 4.559862 TTCCAAGAGAAGTTCCATCCTC 57.440 45.455 0.00 0.00 0.00 3.71
2245 2693 7.285401 TGAGTTTGGCTACTGAAGAAAAAGATT 59.715 33.333 0.00 0.00 0.00 2.40
2261 2709 4.156455 TCTCAAGTTCTTGAGTTTGGCT 57.844 40.909 29.52 0.00 46.37 4.75
2306 2754 0.961019 GCAGTGATGGCTTGGTGAAA 59.039 50.000 0.00 0.00 0.00 2.69
2367 2815 3.488047 GGACCATTCAATTCGCACTGATG 60.488 47.826 0.00 0.00 0.00 3.07
2440 2888 7.771927 ATTGGCCCTAAGAAATCATAATCAG 57.228 36.000 0.00 0.00 0.00 2.90
2573 3048 6.959639 AACTCAGAAGTAGAAATTGCCAAA 57.040 33.333 0.00 0.00 33.48 3.28
2934 3415 2.287915 GTGGTTGCGAATCTTGCGATAT 59.712 45.455 0.00 0.00 34.24 1.63
2936 3417 0.447801 GTGGTTGCGAATCTTGCGAT 59.552 50.000 0.00 0.00 34.24 4.58
2937 3418 0.882484 TGTGGTTGCGAATCTTGCGA 60.882 50.000 0.00 0.00 34.24 5.10
2938 3419 0.040514 TTGTGGTTGCGAATCTTGCG 60.041 50.000 0.00 0.00 34.24 4.85
2939 3420 2.352503 ATTGTGGTTGCGAATCTTGC 57.647 45.000 0.00 0.00 0.00 4.01
2940 3421 4.685169 AGTATTGTGGTTGCGAATCTTG 57.315 40.909 0.00 0.00 0.00 3.02
2941 3422 6.811253 TTAAGTATTGTGGTTGCGAATCTT 57.189 33.333 0.00 0.00 0.00 2.40
2942 3423 6.597672 TCATTAAGTATTGTGGTTGCGAATCT 59.402 34.615 0.00 0.00 0.00 2.40
2943 3424 6.687105 GTCATTAAGTATTGTGGTTGCGAATC 59.313 38.462 0.00 0.00 0.00 2.52
2944 3425 6.150307 TGTCATTAAGTATTGTGGTTGCGAAT 59.850 34.615 0.00 0.00 0.00 3.34
2945 3426 5.470437 TGTCATTAAGTATTGTGGTTGCGAA 59.530 36.000 0.00 0.00 0.00 4.70
2946 3427 4.998033 TGTCATTAAGTATTGTGGTTGCGA 59.002 37.500 0.00 0.00 0.00 5.10
2947 3428 5.086058 GTGTCATTAAGTATTGTGGTTGCG 58.914 41.667 0.00 0.00 0.00 4.85
2948 3429 6.086222 CAGTGTCATTAAGTATTGTGGTTGC 58.914 40.000 0.00 0.00 0.00 4.17
2954 3435 8.840321 GGAATATGCAGTGTCATTAAGTATTGT 58.160 33.333 5.55 0.00 0.00 2.71
3004 3485 7.141100 AGTAACCAATGAACATTAAACTCGG 57.859 36.000 0.00 0.00 0.00 4.63
3066 3549 3.879295 TGCCTGCTTATTATTGCTCAGTC 59.121 43.478 0.00 0.00 0.00 3.51
3069 3552 3.822735 GGATGCCTGCTTATTATTGCTCA 59.177 43.478 0.00 0.00 0.00 4.26
3072 3555 3.571401 ACTGGATGCCTGCTTATTATTGC 59.429 43.478 0.00 0.00 0.00 3.56
3075 3558 6.006449 CCTTTACTGGATGCCTGCTTATTAT 58.994 40.000 0.00 0.00 0.00 1.28
3085 3575 4.074970 CCATCATACCTTTACTGGATGCC 58.925 47.826 0.00 0.00 32.78 4.40
3093 3583 7.439381 TCGGAAGATTACCATCATACCTTTAC 58.561 38.462 0.00 0.00 33.31 2.01
3139 3629 2.113414 AGGGAATGCCTCCTCTAGCTAT 59.887 50.000 0.00 0.00 44.68 2.97
3142 3632 1.135960 AAGGGAATGCCTCCTCTAGC 58.864 55.000 0.00 0.00 44.68 3.42
3155 3645 5.241403 TCTTATCAGAAGTGCAAAGGGAA 57.759 39.130 0.00 0.00 0.00 3.97
3192 3842 3.812053 GCGCTGAATTCCTATCTCACAAT 59.188 43.478 0.00 0.00 0.00 2.71
3214 3864 3.612472 TTTTAAAGAGTGGCGTTTCCG 57.388 42.857 0.00 0.00 37.80 4.30
3307 5486 8.711457 CAAAATAATGAAACTAAGGGCAAACAG 58.289 33.333 0.00 0.00 0.00 3.16
3328 5507 4.405358 TGGAGAACAAGTTCCTTGCAAAAT 59.595 37.500 9.20 0.00 44.43 1.82
3334 5513 3.403038 ACGATGGAGAACAAGTTCCTTG 58.597 45.455 9.20 2.54 45.85 3.61
3349 5528 9.236691 CTTCAAAATAACATGGAAATACGATGG 57.763 33.333 0.00 0.00 38.68 3.51
3360 5539 5.245977 ACAACCCCTCTTCAAAATAACATGG 59.754 40.000 0.00 0.00 0.00 3.66
3387 5566 7.823745 ACCAAGAGAACACAAATAAATGACT 57.176 32.000 0.00 0.00 0.00 3.41
3396 5575 4.527509 TGCAAAACCAAGAGAACACAAA 57.472 36.364 0.00 0.00 0.00 2.83
3445 5627 5.010112 GCCTCCCTTATAATTTTCTCAAGCC 59.990 44.000 0.00 0.00 0.00 4.35
3448 5630 6.998673 GCTAGCCTCCCTTATAATTTTCTCAA 59.001 38.462 2.29 0.00 0.00 3.02
3530 5713 4.607293 AGACATAGTCTGTGCACTCAAA 57.393 40.909 19.41 0.00 41.76 2.69
3531 5714 5.418840 TGATAGACATAGTCTGTGCACTCAA 59.581 40.000 19.41 0.00 43.30 3.02
3643 5826 8.375493 ACACTATAACAACCTGAGAGGATTTA 57.625 34.615 0.00 0.00 37.67 1.40
3644 5827 7.259088 ACACTATAACAACCTGAGAGGATTT 57.741 36.000 0.00 0.00 37.67 2.17
3653 5836 3.871594 GCTGCCTACACTATAACAACCTG 59.128 47.826 0.00 0.00 0.00 4.00
3654 5837 3.517901 TGCTGCCTACACTATAACAACCT 59.482 43.478 0.00 0.00 0.00 3.50
3664 5847 1.604378 GGGACATGCTGCCTACACT 59.396 57.895 0.00 0.00 0.00 3.55
3665 5848 1.815421 CGGGACATGCTGCCTACAC 60.815 63.158 0.00 0.00 0.00 2.90
3666 5849 1.960040 CTCGGGACATGCTGCCTACA 61.960 60.000 0.00 0.00 0.00 2.74
3667 5850 1.227380 CTCGGGACATGCTGCCTAC 60.227 63.158 0.00 0.00 0.00 3.18
3668 5851 2.434843 CCTCGGGACATGCTGCCTA 61.435 63.158 0.00 0.00 0.00 3.93
3669 5852 3.790437 CCTCGGGACATGCTGCCT 61.790 66.667 0.00 0.00 0.00 4.75
3670 5853 3.628646 AACCTCGGGACATGCTGCC 62.629 63.158 0.00 0.00 0.00 4.85
3671 5854 2.045926 AACCTCGGGACATGCTGC 60.046 61.111 0.00 0.00 0.00 5.25
3672 5855 0.321564 TTGAACCTCGGGACATGCTG 60.322 55.000 0.00 0.00 0.00 4.41
3673 5856 0.620556 ATTGAACCTCGGGACATGCT 59.379 50.000 0.00 0.00 0.00 3.79
3674 5857 1.017387 GATTGAACCTCGGGACATGC 58.983 55.000 0.00 0.00 0.00 4.06
3675 5858 2.169352 AGAGATTGAACCTCGGGACATG 59.831 50.000 0.00 0.00 35.88 3.21
3676 5859 2.472029 AGAGATTGAACCTCGGGACAT 58.528 47.619 0.00 0.00 35.88 3.06
3677 5860 1.938585 AGAGATTGAACCTCGGGACA 58.061 50.000 0.00 0.00 35.88 4.02
3678 5861 3.003480 CAAAGAGATTGAACCTCGGGAC 58.997 50.000 0.00 0.00 41.85 4.46
3679 5862 2.615493 GCAAAGAGATTGAACCTCGGGA 60.615 50.000 0.00 0.00 41.85 5.14
3680 5863 1.740025 GCAAAGAGATTGAACCTCGGG 59.260 52.381 0.00 0.00 41.85 5.14
3681 5864 2.675348 GAGCAAAGAGATTGAACCTCGG 59.325 50.000 0.00 0.00 41.85 4.63
3682 5865 3.329386 TGAGCAAAGAGATTGAACCTCG 58.671 45.455 0.00 0.00 41.85 4.63
3683 5866 4.096081 CCATGAGCAAAGAGATTGAACCTC 59.904 45.833 0.00 0.00 41.85 3.85
3684 5867 4.015084 CCATGAGCAAAGAGATTGAACCT 58.985 43.478 0.00 0.00 41.85 3.50
3685 5868 3.129988 CCCATGAGCAAAGAGATTGAACC 59.870 47.826 0.00 0.00 41.85 3.62
3686 5869 4.012374 TCCCATGAGCAAAGAGATTGAAC 58.988 43.478 0.00 0.00 41.85 3.18
3687 5870 4.305539 TCCCATGAGCAAAGAGATTGAA 57.694 40.909 0.00 0.00 41.85 2.69
3688 5871 4.204799 CATCCCATGAGCAAAGAGATTGA 58.795 43.478 0.00 0.00 41.85 2.57
3689 5872 3.952323 ACATCCCATGAGCAAAGAGATTG 59.048 43.478 0.00 0.00 42.21 2.67
3690 5873 3.952323 CACATCCCATGAGCAAAGAGATT 59.048 43.478 0.00 0.00 0.00 2.40
3691 5874 3.053842 ACACATCCCATGAGCAAAGAGAT 60.054 43.478 0.00 0.00 0.00 2.75
3692 5875 2.306805 ACACATCCCATGAGCAAAGAGA 59.693 45.455 0.00 0.00 0.00 3.10
3693 5876 2.719739 ACACATCCCATGAGCAAAGAG 58.280 47.619 0.00 0.00 0.00 2.85
3694 5877 2.885135 ACACATCCCATGAGCAAAGA 57.115 45.000 0.00 0.00 0.00 2.52
3695 5878 3.671433 CGAAACACATCCCATGAGCAAAG 60.671 47.826 0.00 0.00 0.00 2.77
3696 5879 2.228582 CGAAACACATCCCATGAGCAAA 59.771 45.455 0.00 0.00 0.00 3.68
3697 5880 1.811965 CGAAACACATCCCATGAGCAA 59.188 47.619 0.00 0.00 0.00 3.91
3698 5881 1.003003 TCGAAACACATCCCATGAGCA 59.997 47.619 0.00 0.00 0.00 4.26
3699 5882 1.737838 TCGAAACACATCCCATGAGC 58.262 50.000 0.00 0.00 0.00 4.26
3700 5883 4.194640 AGATTCGAAACACATCCCATGAG 58.805 43.478 0.00 0.00 0.00 2.90
3701 5884 4.220693 AGATTCGAAACACATCCCATGA 57.779 40.909 0.00 0.00 0.00 3.07
3702 5885 4.439153 CCAAGATTCGAAACACATCCCATG 60.439 45.833 0.00 0.00 0.00 3.66
3703 5886 3.696051 CCAAGATTCGAAACACATCCCAT 59.304 43.478 0.00 0.00 0.00 4.00
3704 5887 3.081061 CCAAGATTCGAAACACATCCCA 58.919 45.455 0.00 0.00 0.00 4.37
3705 5888 3.343617 TCCAAGATTCGAAACACATCCC 58.656 45.455 0.00 0.00 0.00 3.85
3706 5889 4.731773 GCATCCAAGATTCGAAACACATCC 60.732 45.833 0.00 0.00 0.00 3.51
3707 5890 4.346129 GCATCCAAGATTCGAAACACATC 58.654 43.478 0.00 0.00 0.00 3.06
3708 5891 3.129287 GGCATCCAAGATTCGAAACACAT 59.871 43.478 0.00 0.00 0.00 3.21
3709 5892 2.487762 GGCATCCAAGATTCGAAACACA 59.512 45.455 0.00 0.00 0.00 3.72
3710 5893 2.476185 CGGCATCCAAGATTCGAAACAC 60.476 50.000 0.00 0.00 0.00 3.32
3711 5894 1.737236 CGGCATCCAAGATTCGAAACA 59.263 47.619 0.00 0.00 0.00 2.83
3712 5895 1.737793 ACGGCATCCAAGATTCGAAAC 59.262 47.619 0.00 0.00 0.00 2.78
3713 5896 2.107950 ACGGCATCCAAGATTCGAAA 57.892 45.000 0.00 0.00 0.00 3.46
3714 5897 1.737236 CAACGGCATCCAAGATTCGAA 59.263 47.619 0.00 0.00 0.00 3.71
3715 5898 1.368641 CAACGGCATCCAAGATTCGA 58.631 50.000 0.00 0.00 0.00 3.71
3716 5899 0.248215 GCAACGGCATCCAAGATTCG 60.248 55.000 0.00 0.00 40.72 3.34
3717 5900 1.064654 GAGCAACGGCATCCAAGATTC 59.935 52.381 0.00 0.00 44.61 2.52
3718 5901 1.098050 GAGCAACGGCATCCAAGATT 58.902 50.000 0.00 0.00 44.61 2.40
3719 5902 0.749454 GGAGCAACGGCATCCAAGAT 60.749 55.000 0.00 0.00 44.61 2.40
3720 5903 1.377202 GGAGCAACGGCATCCAAGA 60.377 57.895 0.00 0.00 44.61 3.02
3721 5904 1.377725 AGGAGCAACGGCATCCAAG 60.378 57.895 0.00 0.00 44.61 3.61
3722 5905 1.675310 CAGGAGCAACGGCATCCAA 60.675 57.895 0.00 0.00 44.61 3.53
3723 5906 1.913951 ATCAGGAGCAACGGCATCCA 61.914 55.000 0.00 0.00 44.61 3.41
3724 5907 0.749454 AATCAGGAGCAACGGCATCC 60.749 55.000 0.00 0.00 44.61 3.51
3725 5908 0.379669 CAATCAGGAGCAACGGCATC 59.620 55.000 0.00 0.00 44.61 3.91
3726 5909 0.035152 TCAATCAGGAGCAACGGCAT 60.035 50.000 0.00 0.00 44.61 4.40
3727 5910 0.035152 ATCAATCAGGAGCAACGGCA 60.035 50.000 0.00 0.00 44.61 5.69
3728 5911 1.953559 TATCAATCAGGAGCAACGGC 58.046 50.000 0.00 0.00 41.61 5.68
3729 5912 2.874701 CCTTATCAATCAGGAGCAACGG 59.125 50.000 0.00 0.00 30.81 4.44
3730 5913 2.874701 CCCTTATCAATCAGGAGCAACG 59.125 50.000 0.00 0.00 30.81 4.10
3731 5914 2.620585 GCCCTTATCAATCAGGAGCAAC 59.379 50.000 0.00 0.00 30.81 4.17
3732 5915 2.423373 GGCCCTTATCAATCAGGAGCAA 60.423 50.000 0.00 0.00 31.44 3.91
3733 5916 1.143684 GGCCCTTATCAATCAGGAGCA 59.856 52.381 0.00 0.00 31.44 4.26
3734 5917 1.143684 TGGCCCTTATCAATCAGGAGC 59.856 52.381 0.00 0.00 30.81 4.70
3735 5918 2.487986 GGTGGCCCTTATCAATCAGGAG 60.488 54.545 0.00 0.00 30.81 3.69
3736 5919 1.494721 GGTGGCCCTTATCAATCAGGA 59.505 52.381 0.00 0.00 30.81 3.86
3737 5920 1.496429 AGGTGGCCCTTATCAATCAGG 59.504 52.381 0.00 0.00 38.13 3.86
3748 5931 2.683768 CTAGTATGAGAAGGTGGCCCT 58.316 52.381 0.00 0.00 45.63 5.19
3749 5932 1.070914 GCTAGTATGAGAAGGTGGCCC 59.929 57.143 0.00 0.00 0.00 5.80
3750 5933 1.269831 CGCTAGTATGAGAAGGTGGCC 60.270 57.143 0.00 0.00 0.00 5.36
3751 5934 1.870167 GCGCTAGTATGAGAAGGTGGC 60.870 57.143 0.00 0.00 0.00 5.01
3752 5935 1.269831 GGCGCTAGTATGAGAAGGTGG 60.270 57.143 7.64 0.00 0.00 4.61
3753 5936 1.269831 GGGCGCTAGTATGAGAAGGTG 60.270 57.143 7.64 0.00 0.00 4.00
3754 5937 1.041437 GGGCGCTAGTATGAGAAGGT 58.959 55.000 7.64 0.00 0.00 3.50
3755 5938 1.333177 AGGGCGCTAGTATGAGAAGG 58.667 55.000 7.64 0.00 0.00 3.46
3756 5939 3.150767 AGTAGGGCGCTAGTATGAGAAG 58.849 50.000 16.00 0.00 0.00 2.85
3757 5940 3.225177 AGTAGGGCGCTAGTATGAGAA 57.775 47.619 16.00 0.00 0.00 2.87
3758 5941 2.953284 AGTAGGGCGCTAGTATGAGA 57.047 50.000 16.00 0.00 0.00 3.27
3759 5942 2.095668 CGAAGTAGGGCGCTAGTATGAG 60.096 54.545 17.64 6.82 0.00 2.90
3760 5943 1.878088 CGAAGTAGGGCGCTAGTATGA 59.122 52.381 17.64 0.00 0.00 2.15
3761 5944 1.607628 ACGAAGTAGGGCGCTAGTATG 59.392 52.381 17.64 14.78 41.94 2.39
3762 5945 1.978454 ACGAAGTAGGGCGCTAGTAT 58.022 50.000 17.64 8.82 41.94 2.12
3763 5946 1.755179 AACGAAGTAGGGCGCTAGTA 58.245 50.000 17.64 0.00 45.00 1.82
3764 5947 1.674962 CTAACGAAGTAGGGCGCTAGT 59.325 52.381 11.30 11.76 45.00 2.57
3765 5948 1.674962 ACTAACGAAGTAGGGCGCTAG 59.325 52.381 11.30 1.95 45.00 3.42
3766 5949 1.402968 CACTAACGAAGTAGGGCGCTA 59.597 52.381 7.64 6.37 45.00 4.26
3767 5950 0.172803 CACTAACGAAGTAGGGCGCT 59.827 55.000 7.64 8.86 45.00 5.92
3768 5951 0.108945 ACACTAACGAAGTAGGGCGC 60.109 55.000 0.00 0.00 45.00 6.53
3769 5952 3.062323 CTACACTAACGAAGTAGGGCG 57.938 52.381 0.00 0.00 45.00 6.13
3773 5956 3.119602 TGCTGCCTACACTAACGAAGTAG 60.120 47.826 0.00 0.00 45.00 2.57
3774 5957 2.821378 TGCTGCCTACACTAACGAAGTA 59.179 45.455 0.00 0.00 45.00 2.24
3776 5959 2.363788 TGCTGCCTACACTAACGAAG 57.636 50.000 0.00 0.00 0.00 3.79
3777 5960 2.028476 ACATGCTGCCTACACTAACGAA 60.028 45.455 0.00 0.00 0.00 3.85
3778 5961 1.548719 ACATGCTGCCTACACTAACGA 59.451 47.619 0.00 0.00 0.00 3.85
3779 5962 1.927174 GACATGCTGCCTACACTAACG 59.073 52.381 0.00 0.00 0.00 3.18
3780 5963 2.280628 GGACATGCTGCCTACACTAAC 58.719 52.381 0.00 0.00 0.00 2.34
3781 5964 1.209504 GGGACATGCTGCCTACACTAA 59.790 52.381 0.00 0.00 0.00 2.24
3782 5965 0.830648 GGGACATGCTGCCTACACTA 59.169 55.000 0.00 0.00 0.00 2.74
3783 5966 1.604378 GGGACATGCTGCCTACACT 59.396 57.895 0.00 0.00 0.00 3.55
3784 5967 1.815421 CGGGACATGCTGCCTACAC 60.815 63.158 0.00 0.00 0.00 2.90
3785 5968 1.960040 CTCGGGACATGCTGCCTACA 61.960 60.000 0.00 0.00 0.00 2.74
3786 5969 1.227380 CTCGGGACATGCTGCCTAC 60.227 63.158 0.00 0.00 0.00 3.18
3787 5970 2.434843 CCTCGGGACATGCTGCCTA 61.435 63.158 0.00 0.00 0.00 3.93
3788 5971 3.790437 CCTCGGGACATGCTGCCT 61.790 66.667 0.00 0.00 0.00 4.75
3789 5972 3.628646 AACCTCGGGACATGCTGCC 62.629 63.158 0.00 0.00 0.00 4.85
3790 5973 2.045926 AACCTCGGGACATGCTGC 60.046 61.111 0.00 0.00 0.00 5.25
3791 5974 0.321564 TTGAACCTCGGGACATGCTG 60.322 55.000 0.00 0.00 0.00 4.41
3792 5975 0.620556 ATTGAACCTCGGGACATGCT 59.379 50.000 0.00 0.00 0.00 3.79
3793 5976 1.017387 GATTGAACCTCGGGACATGC 58.983 55.000 0.00 0.00 0.00 4.06
3794 5977 2.169352 AGAGATTGAACCTCGGGACATG 59.831 50.000 0.00 0.00 35.88 3.21
3795 5978 2.472029 AGAGATTGAACCTCGGGACAT 58.528 47.619 0.00 0.00 35.88 3.06
3796 5979 1.938585 AGAGATTGAACCTCGGGACA 58.061 50.000 0.00 0.00 35.88 4.02
3797 5980 3.003480 CAAAGAGATTGAACCTCGGGAC 58.997 50.000 0.00 0.00 41.85 4.46
3798 5981 2.615493 GCAAAGAGATTGAACCTCGGGA 60.615 50.000 0.00 0.00 41.85 5.14
3799 5982 1.740025 GCAAAGAGATTGAACCTCGGG 59.260 52.381 0.00 0.00 41.85 5.14
3800 5983 2.675348 GAGCAAAGAGATTGAACCTCGG 59.325 50.000 0.00 0.00 41.85 4.63
3801 5984 3.329386 TGAGCAAAGAGATTGAACCTCG 58.671 45.455 0.00 0.00 41.85 4.63
3802 5985 5.893897 AATGAGCAAAGAGATTGAACCTC 57.106 39.130 0.00 0.00 41.85 3.85
3803 5986 5.047519 CCAAATGAGCAAAGAGATTGAACCT 60.048 40.000 0.00 0.00 41.85 3.50
3804 5987 5.166398 CCAAATGAGCAAAGAGATTGAACC 58.834 41.667 0.00 0.00 41.85 3.62
3805 5988 5.632347 CACCAAATGAGCAAAGAGATTGAAC 59.368 40.000 0.00 0.00 41.85 3.18
3806 5989 5.302568 ACACCAAATGAGCAAAGAGATTGAA 59.697 36.000 0.00 0.00 41.85 2.69
3807 5990 4.828939 ACACCAAATGAGCAAAGAGATTGA 59.171 37.500 0.00 0.00 41.85 2.57
3808 5991 5.130292 ACACCAAATGAGCAAAGAGATTG 57.870 39.130 0.00 0.00 42.21 2.67
3809 5992 6.006449 ACTACACCAAATGAGCAAAGAGATT 58.994 36.000 0.00 0.00 0.00 2.40
3810 5993 5.413833 CACTACACCAAATGAGCAAAGAGAT 59.586 40.000 0.00 0.00 0.00 2.75
3811 5994 4.756642 CACTACACCAAATGAGCAAAGAGA 59.243 41.667 0.00 0.00 0.00 3.10
3812 5995 4.516698 ACACTACACCAAATGAGCAAAGAG 59.483 41.667 0.00 0.00 0.00 2.85
3813 5996 4.460263 ACACTACACCAAATGAGCAAAGA 58.540 39.130 0.00 0.00 0.00 2.52
3814 5997 4.836125 ACACTACACCAAATGAGCAAAG 57.164 40.909 0.00 0.00 0.00 2.77
3815 5998 4.887071 AGAACACTACACCAAATGAGCAAA 59.113 37.500 0.00 0.00 0.00 3.68
3816 5999 4.460263 AGAACACTACACCAAATGAGCAA 58.540 39.130 0.00 0.00 0.00 3.91
3817 6000 4.085357 AGAACACTACACCAAATGAGCA 57.915 40.909 0.00 0.00 0.00 4.26
3818 6001 5.348997 GTCTAGAACACTACACCAAATGAGC 59.651 44.000 0.00 0.00 0.00 4.26
3819 6002 6.692486 AGTCTAGAACACTACACCAAATGAG 58.308 40.000 0.00 0.00 0.00 2.90
3820 6003 6.665992 AGTCTAGAACACTACACCAAATGA 57.334 37.500 0.00 0.00 0.00 2.57
3821 6004 7.730364 AAAGTCTAGAACACTACACCAAATG 57.270 36.000 0.00 0.00 0.00 2.32
3822 6005 8.621286 CAAAAAGTCTAGAACACTACACCAAAT 58.379 33.333 0.00 0.00 0.00 2.32
3823 6006 7.825270 TCAAAAAGTCTAGAACACTACACCAAA 59.175 33.333 0.00 0.00 0.00 3.28
3824 6007 7.332557 TCAAAAAGTCTAGAACACTACACCAA 58.667 34.615 0.00 0.00 0.00 3.67
3825 6008 6.880484 TCAAAAAGTCTAGAACACTACACCA 58.120 36.000 0.00 0.00 0.00 4.17
3826 6009 7.656137 TCATCAAAAAGTCTAGAACACTACACC 59.344 37.037 0.00 0.00 0.00 4.16
3827 6010 8.488764 GTCATCAAAAAGTCTAGAACACTACAC 58.511 37.037 0.00 0.00 0.00 2.90
3828 6011 8.201464 TGTCATCAAAAAGTCTAGAACACTACA 58.799 33.333 0.00 0.00 0.00 2.74
3829 6012 8.589335 TGTCATCAAAAAGTCTAGAACACTAC 57.411 34.615 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.