Multiple sequence alignment - TraesCS3B01G044400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G044400 chr3B 100.000 2618 0 0 1 2618 22526008 22523391 0.000000e+00 4835.0
1 TraesCS3B01G044400 chr3B 92.703 973 56 4 1658 2615 22473799 22474771 0.000000e+00 1389.0
2 TraesCS3B01G044400 chr3B 99.638 552 2 0 1 552 638127955 638128506 0.000000e+00 1009.0
3 TraesCS3B01G044400 chr3B 81.896 823 113 19 1658 2456 22348223 22349033 0.000000e+00 662.0
4 TraesCS3B01G044400 chr3D 93.575 965 55 2 1658 2615 15360078 15361042 0.000000e+00 1432.0
5 TraesCS3B01G044400 chr3D 80.263 836 123 23 1658 2460 15373024 15373850 2.240000e-165 592.0
6 TraesCS3B01G044400 chr3D 95.604 182 6 2 550 730 346313529 346313709 9.170000e-75 291.0
7 TraesCS3B01G044400 chr3A 93.203 971 52 8 1661 2618 20932432 20931463 0.000000e+00 1415.0
8 TraesCS3B01G044400 chr3A 99.457 552 3 0 1 552 683063143 683062592 0.000000e+00 1003.0
9 TraesCS3B01G044400 chr3A 99.275 552 4 0 1 552 743997514 743996963 0.000000e+00 998.0
10 TraesCS3B01G044400 chr3A 81.356 826 108 24 1670 2459 20835289 20834474 4.750000e-177 630.0
11 TraesCS3B01G044400 chr3A 80.473 804 122 24 1661 2439 20896442 20895649 1.350000e-162 582.0
12 TraesCS3B01G044400 chr5B 95.612 866 30 2 805 1662 198416602 198417467 0.000000e+00 1382.0
13 TraesCS3B01G044400 chr5B 98.913 552 6 0 1 552 572902753 572902202 0.000000e+00 987.0
14 TraesCS3B01G044400 chr5B 78.385 768 110 30 1783 2502 704302049 704301290 5.140000e-122 448.0
15 TraesCS3B01G044400 chr5B 90.187 214 18 3 544 755 425087084 425086872 2.570000e-70 276.0
16 TraesCS3B01G044400 chr4A 95.612 866 30 2 805 1662 607178721 607179586 0.000000e+00 1382.0
17 TraesCS3B01G044400 chr4A 99.457 552 3 0 1 552 169787453 169786902 0.000000e+00 1003.0
18 TraesCS3B01G044400 chr4A 99.275 552 4 0 1 552 311082683 311082132 0.000000e+00 998.0
19 TraesCS3B01G044400 chr4A 97.727 44 1 0 713 756 169786903 169786860 2.790000e-10 76.8
20 TraesCS3B01G044400 chr4A 97.674 43 1 0 715 757 125245190 125245148 1.000000e-09 75.0
21 TraesCS3B01G044400 chr4A 97.674 43 1 0 713 755 311082133 311082091 1.000000e-09 75.0
22 TraesCS3B01G044400 chrUn 94.913 865 33 3 805 1661 331324928 331325789 0.000000e+00 1343.0
23 TraesCS3B01G044400 chrUn 94.676 864 35 3 805 1660 331364760 331365620 0.000000e+00 1330.0
24 TraesCS3B01G044400 chr7B 94.676 864 35 3 805 1660 725613595 725612735 0.000000e+00 1330.0
25 TraesCS3B01G044400 chr7B 94.573 866 36 3 805 1662 725648457 725647595 0.000000e+00 1328.0
26 TraesCS3B01G044400 chr7B 95.107 838 30 5 840 1666 253687543 253688380 0.000000e+00 1310.0
27 TraesCS3B01G044400 chr7B 95.349 817 29 3 840 1647 23639557 23638741 0.000000e+00 1290.0
28 TraesCS3B01G044400 chr7B 99.094 552 4 1 1 552 623973860 623974410 0.000000e+00 990.0
29 TraesCS3B01G044400 chr7B 100.000 167 0 0 548 714 104001932 104001766 2.530000e-80 309.0
30 TraesCS3B01G044400 chr7A 99.094 552 5 0 1 552 457690061 457690612 0.000000e+00 992.0
31 TraesCS3B01G044400 chr1A 98.913 552 6 0 1 552 154698018 154698569 0.000000e+00 987.0
32 TraesCS3B01G044400 chr1A 89.088 614 66 1 979 1591 35544856 35545469 0.000000e+00 761.0
33 TraesCS3B01G044400 chr1A 100.000 41 0 0 715 755 39151584 39151544 2.790000e-10 76.8
34 TraesCS3B01G044400 chr1A 97.727 44 0 1 713 755 154698568 154698611 1.000000e-09 75.0
35 TraesCS3B01G044400 chr5D 78.243 740 118 19 1750 2451 558348055 558348789 4.000000e-118 435.0
36 TraesCS3B01G044400 chr5D 98.810 168 2 0 547 714 287828511 287828344 1.520000e-77 300.0
37 TraesCS3B01G044400 chr4B 98.810 168 2 0 547 714 526949012 526948845 1.520000e-77 300.0
38 TraesCS3B01G044400 chr2B 98.246 171 3 0 550 720 186935720 186935550 1.520000e-77 300.0
39 TraesCS3B01G044400 chr2B 99.390 164 1 0 551 714 631723278 631723115 5.480000e-77 298.0
40 TraesCS3B01G044400 chr2B 100.000 42 0 0 713 754 167078859 167078818 7.770000e-11 78.7
41 TraesCS3B01G044400 chr5A 99.390 164 1 0 551 714 382564857 382565020 5.480000e-77 298.0
42 TraesCS3B01G044400 chr6D 96.045 177 5 2 551 727 27398891 27399065 1.190000e-73 287.0
43 TraesCS3B01G044400 chr1D 97.674 43 1 0 715 757 420752719 420752677 1.000000e-09 75.0
44 TraesCS3B01G044400 chr1B 97.674 43 1 0 713 755 252762695 252762737 1.000000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G044400 chr3B 22523391 22526008 2617 True 4835.0 4835 100.0000 1 2618 1 chr3B.!!$R1 2617
1 TraesCS3B01G044400 chr3B 22473799 22474771 972 False 1389.0 1389 92.7030 1658 2615 1 chr3B.!!$F2 957
2 TraesCS3B01G044400 chr3B 638127955 638128506 551 False 1009.0 1009 99.6380 1 552 1 chr3B.!!$F3 551
3 TraesCS3B01G044400 chr3B 22348223 22349033 810 False 662.0 662 81.8960 1658 2456 1 chr3B.!!$F1 798
4 TraesCS3B01G044400 chr3D 15360078 15361042 964 False 1432.0 1432 93.5750 1658 2615 1 chr3D.!!$F1 957
5 TraesCS3B01G044400 chr3D 15373024 15373850 826 False 592.0 592 80.2630 1658 2460 1 chr3D.!!$F2 802
6 TraesCS3B01G044400 chr3A 20931463 20932432 969 True 1415.0 1415 93.2030 1661 2618 1 chr3A.!!$R3 957
7 TraesCS3B01G044400 chr3A 683062592 683063143 551 True 1003.0 1003 99.4570 1 552 1 chr3A.!!$R4 551
8 TraesCS3B01G044400 chr3A 743996963 743997514 551 True 998.0 998 99.2750 1 552 1 chr3A.!!$R5 551
9 TraesCS3B01G044400 chr3A 20834474 20835289 815 True 630.0 630 81.3560 1670 2459 1 chr3A.!!$R1 789
10 TraesCS3B01G044400 chr3A 20895649 20896442 793 True 582.0 582 80.4730 1661 2439 1 chr3A.!!$R2 778
11 TraesCS3B01G044400 chr5B 198416602 198417467 865 False 1382.0 1382 95.6120 805 1662 1 chr5B.!!$F1 857
12 TraesCS3B01G044400 chr5B 572902202 572902753 551 True 987.0 987 98.9130 1 552 1 chr5B.!!$R2 551
13 TraesCS3B01G044400 chr5B 704301290 704302049 759 True 448.0 448 78.3850 1783 2502 1 chr5B.!!$R3 719
14 TraesCS3B01G044400 chr4A 607178721 607179586 865 False 1382.0 1382 95.6120 805 1662 1 chr4A.!!$F1 857
15 TraesCS3B01G044400 chr4A 169786860 169787453 593 True 539.9 1003 98.5920 1 756 2 chr4A.!!$R2 755
16 TraesCS3B01G044400 chr4A 311082091 311082683 592 True 536.5 998 98.4745 1 755 2 chr4A.!!$R3 754
17 TraesCS3B01G044400 chrUn 331324928 331325789 861 False 1343.0 1343 94.9130 805 1661 1 chrUn.!!$F1 856
18 TraesCS3B01G044400 chrUn 331364760 331365620 860 False 1330.0 1330 94.6760 805 1660 1 chrUn.!!$F2 855
19 TraesCS3B01G044400 chr7B 725612735 725613595 860 True 1330.0 1330 94.6760 805 1660 1 chr7B.!!$R3 855
20 TraesCS3B01G044400 chr7B 725647595 725648457 862 True 1328.0 1328 94.5730 805 1662 1 chr7B.!!$R4 857
21 TraesCS3B01G044400 chr7B 253687543 253688380 837 False 1310.0 1310 95.1070 840 1666 1 chr7B.!!$F1 826
22 TraesCS3B01G044400 chr7B 23638741 23639557 816 True 1290.0 1290 95.3490 840 1647 1 chr7B.!!$R1 807
23 TraesCS3B01G044400 chr7B 623973860 623974410 550 False 990.0 990 99.0940 1 552 1 chr7B.!!$F2 551
24 TraesCS3B01G044400 chr7A 457690061 457690612 551 False 992.0 992 99.0940 1 552 1 chr7A.!!$F1 551
25 TraesCS3B01G044400 chr1A 35544856 35545469 613 False 761.0 761 89.0880 979 1591 1 chr1A.!!$F1 612
26 TraesCS3B01G044400 chr1A 154698018 154698611 593 False 531.0 987 98.3200 1 755 2 chr1A.!!$F2 754
27 TraesCS3B01G044400 chr5D 558348055 558348789 734 False 435.0 435 78.2430 1750 2451 1 chr5D.!!$F1 701

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
781 782 0.0414 CACGATCGCACAAAGCAACA 60.041 50.0 16.6 0.0 46.13 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1703 1716 0.744414 CGGGAGCATGTTGTGGGTAG 60.744 60.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
552 553 4.411993 GCACTCTTTGCCTTTCTTCTAC 57.588 45.455 0.00 0.00 46.63 2.59
553 554 4.068599 GCACTCTTTGCCTTTCTTCTACT 58.931 43.478 0.00 0.00 46.63 2.57
554 555 4.153296 GCACTCTTTGCCTTTCTTCTACTC 59.847 45.833 0.00 0.00 46.63 2.59
555 556 4.693095 CACTCTTTGCCTTTCTTCTACTCC 59.307 45.833 0.00 0.00 0.00 3.85
556 557 4.257731 CTCTTTGCCTTTCTTCTACTCCC 58.742 47.826 0.00 0.00 0.00 4.30
557 558 3.910627 TCTTTGCCTTTCTTCTACTCCCT 59.089 43.478 0.00 0.00 0.00 4.20
558 559 3.983044 TTGCCTTTCTTCTACTCCCTC 57.017 47.619 0.00 0.00 0.00 4.30
559 560 2.188817 TGCCTTTCTTCTACTCCCTCC 58.811 52.381 0.00 0.00 0.00 4.30
560 561 1.137282 GCCTTTCTTCTACTCCCTCCG 59.863 57.143 0.00 0.00 0.00 4.63
561 562 2.458620 CCTTTCTTCTACTCCCTCCGT 58.541 52.381 0.00 0.00 0.00 4.69
562 563 2.832733 CCTTTCTTCTACTCCCTCCGTT 59.167 50.000 0.00 0.00 0.00 4.44
563 564 3.119065 CCTTTCTTCTACTCCCTCCGTTC 60.119 52.174 0.00 0.00 0.00 3.95
564 565 2.140839 TCTTCTACTCCCTCCGTTCC 57.859 55.000 0.00 0.00 0.00 3.62
565 566 1.639628 TCTTCTACTCCCTCCGTTCCT 59.360 52.381 0.00 0.00 0.00 3.36
566 567 2.848694 TCTTCTACTCCCTCCGTTCCTA 59.151 50.000 0.00 0.00 0.00 2.94
567 568 3.267812 TCTTCTACTCCCTCCGTTCCTAA 59.732 47.826 0.00 0.00 0.00 2.69
568 569 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
569 570 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
570 571 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
571 572 5.136105 TCTACTCCCTCCGTTCCTAAATAC 58.864 45.833 0.00 0.00 0.00 1.89
572 573 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
573 574 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
574 575 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
575 576 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
576 577 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
577 578 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
578 579 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
579 580 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
580 581 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
581 582 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
582 583 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
583 584 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
584 585 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
585 586 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
586 587 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
587 588 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
588 589 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
589 590 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
594 595 7.817418 ACTTGTCTTTCTAGGCATTTTAACA 57.183 32.000 0.00 0.00 35.56 2.41
595 596 8.232913 ACTTGTCTTTCTAGGCATTTTAACAA 57.767 30.769 0.00 0.00 35.56 2.83
596 597 8.352942 ACTTGTCTTTCTAGGCATTTTAACAAG 58.647 33.333 0.00 0.00 43.26 3.16
597 598 7.817418 TGTCTTTCTAGGCATTTTAACAAGT 57.183 32.000 0.00 0.00 29.10 3.16
598 599 7.648142 TGTCTTTCTAGGCATTTTAACAAGTG 58.352 34.615 0.00 0.00 29.10 3.16
599 600 7.500892 TGTCTTTCTAGGCATTTTAACAAGTGA 59.499 33.333 0.00 0.00 29.10 3.41
600 601 7.803659 GTCTTTCTAGGCATTTTAACAAGTGAC 59.196 37.037 0.00 0.00 0.00 3.67
601 602 7.719633 TCTTTCTAGGCATTTTAACAAGTGACT 59.280 33.333 0.00 0.00 40.91 3.41
602 603 8.911918 TTTCTAGGCATTTTAACAAGTGACTA 57.088 30.769 0.00 0.00 38.82 2.59
603 604 7.900782 TCTAGGCATTTTAACAAGTGACTAC 57.099 36.000 0.00 0.00 38.82 2.73
604 605 7.446769 TCTAGGCATTTTAACAAGTGACTACA 58.553 34.615 0.00 0.00 38.82 2.74
605 606 8.100791 TCTAGGCATTTTAACAAGTGACTACAT 58.899 33.333 0.00 0.00 38.82 2.29
606 607 9.378551 CTAGGCATTTTAACAAGTGACTACATA 57.621 33.333 0.00 0.00 38.82 2.29
607 608 8.040716 AGGCATTTTAACAAGTGACTACATAC 57.959 34.615 0.00 0.00 36.22 2.39
608 609 6.959311 GGCATTTTAACAAGTGACTACATACG 59.041 38.462 0.00 0.00 0.00 3.06
609 610 6.959311 GCATTTTAACAAGTGACTACATACGG 59.041 38.462 0.00 0.00 0.00 4.02
610 611 7.148540 GCATTTTAACAAGTGACTACATACGGA 60.149 37.037 0.00 0.00 0.00 4.69
611 612 7.878477 TTTTAACAAGTGACTACATACGGAG 57.122 36.000 0.00 0.00 0.00 4.63
630 631 6.931838 ACGGAGTAAAATGAGTGAATCTACA 58.068 36.000 0.00 0.00 41.94 2.74
631 632 6.812160 ACGGAGTAAAATGAGTGAATCTACAC 59.188 38.462 0.00 0.00 41.94 2.90
671 672 7.946655 CATACATCCGTATGTGTTAGTCATT 57.053 36.000 3.56 0.00 46.70 2.57
672 673 8.365399 CATACATCCGTATGTGTTAGTCATTT 57.635 34.615 3.56 0.00 46.70 2.32
673 674 6.662414 ACATCCGTATGTGTTAGTCATTTG 57.338 37.500 0.00 0.00 44.79 2.32
674 675 6.403049 ACATCCGTATGTGTTAGTCATTTGA 58.597 36.000 0.00 0.00 44.79 2.69
675 676 6.876789 ACATCCGTATGTGTTAGTCATTTGAA 59.123 34.615 0.00 0.00 44.79 2.69
676 677 7.389330 ACATCCGTATGTGTTAGTCATTTGAAA 59.611 33.333 0.00 0.00 44.79 2.69
677 678 7.915293 TCCGTATGTGTTAGTCATTTGAAAT 57.085 32.000 0.00 0.00 0.00 2.17
678 679 7.747888 TCCGTATGTGTTAGTCATTTGAAATG 58.252 34.615 11.54 11.54 0.00 2.32
679 680 7.389330 TCCGTATGTGTTAGTCATTTGAAATGT 59.611 33.333 16.62 2.38 0.00 2.71
680 681 7.692291 CCGTATGTGTTAGTCATTTGAAATGTC 59.308 37.037 16.62 11.74 0.00 3.06
681 682 8.443160 CGTATGTGTTAGTCATTTGAAATGTCT 58.557 33.333 18.62 18.62 0.00 3.41
684 685 9.725019 ATGTGTTAGTCATTTGAAATGTCTAGA 57.275 29.630 18.95 11.07 0.00 2.43
685 686 9.554395 TGTGTTAGTCATTTGAAATGTCTAGAA 57.446 29.630 18.95 11.97 0.00 2.10
705 706 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
706 707 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
707 708 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
708 709 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
709 710 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
710 711 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
711 712 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
712 713 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
713 714 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
770 771 1.014352 AAAATGGTAGGCACGATCGC 58.986 50.000 16.60 0.00 0.00 4.58
771 772 0.107897 AAATGGTAGGCACGATCGCA 60.108 50.000 16.60 3.15 0.00 5.10
772 773 0.810031 AATGGTAGGCACGATCGCAC 60.810 55.000 16.60 7.27 0.00 5.34
773 774 1.955495 ATGGTAGGCACGATCGCACA 61.955 55.000 16.60 4.30 0.00 4.57
774 775 1.447140 GGTAGGCACGATCGCACAA 60.447 57.895 16.60 0.00 0.00 3.33
775 776 1.017177 GGTAGGCACGATCGCACAAA 61.017 55.000 16.60 0.00 0.00 2.83
776 777 0.370273 GTAGGCACGATCGCACAAAG 59.630 55.000 16.60 0.00 0.00 2.77
777 778 1.358725 TAGGCACGATCGCACAAAGC 61.359 55.000 16.60 9.62 40.87 3.51
778 779 2.555782 GCACGATCGCACAAAGCA 59.444 55.556 16.60 0.00 46.13 3.91
779 780 1.082169 GCACGATCGCACAAAGCAA 60.082 52.632 16.60 0.00 46.13 3.91
780 781 1.330080 GCACGATCGCACAAAGCAAC 61.330 55.000 16.60 0.00 46.13 4.17
781 782 0.041400 CACGATCGCACAAAGCAACA 60.041 50.000 16.60 0.00 46.13 3.33
782 783 0.660488 ACGATCGCACAAAGCAACAA 59.340 45.000 16.60 0.00 46.13 2.83
783 784 1.044725 CGATCGCACAAAGCAACAAC 58.955 50.000 0.26 0.00 46.13 3.32
784 785 1.596709 CGATCGCACAAAGCAACAACA 60.597 47.619 0.26 0.00 46.13 3.33
785 786 1.780860 GATCGCACAAAGCAACAACAC 59.219 47.619 0.00 0.00 46.13 3.32
786 787 0.808125 TCGCACAAAGCAACAACACT 59.192 45.000 0.00 0.00 46.13 3.55
787 788 1.191096 CGCACAAAGCAACAACACTC 58.809 50.000 0.00 0.00 46.13 3.51
788 789 1.202177 CGCACAAAGCAACAACACTCT 60.202 47.619 0.00 0.00 46.13 3.24
789 790 2.187707 GCACAAAGCAACAACACTCTG 58.812 47.619 0.00 0.00 44.79 3.35
790 791 2.187707 CACAAAGCAACAACACTCTGC 58.812 47.619 0.00 0.00 36.29 4.26
792 793 2.098117 ACAAAGCAACAACACTCTGCTC 59.902 45.455 0.00 0.00 45.50 4.26
793 794 2.338577 AAGCAACAACACTCTGCTCT 57.661 45.000 0.00 0.00 45.50 4.09
794 795 1.590932 AGCAACAACACTCTGCTCTG 58.409 50.000 0.00 0.00 42.73 3.35
795 796 0.590195 GCAACAACACTCTGCTCTGG 59.410 55.000 0.00 0.00 33.20 3.86
796 797 1.811558 GCAACAACACTCTGCTCTGGA 60.812 52.381 0.00 0.00 33.20 3.86
797 798 1.869767 CAACAACACTCTGCTCTGGAC 59.130 52.381 0.00 0.00 0.00 4.02
798 799 0.394565 ACAACACTCTGCTCTGGACC 59.605 55.000 0.00 0.00 0.00 4.46
799 800 0.321122 CAACACTCTGCTCTGGACCC 60.321 60.000 0.00 0.00 0.00 4.46
800 801 1.484444 AACACTCTGCTCTGGACCCC 61.484 60.000 0.00 0.00 0.00 4.95
801 802 1.915266 CACTCTGCTCTGGACCCCA 60.915 63.158 0.00 0.00 0.00 4.96
802 803 1.915769 ACTCTGCTCTGGACCCCAC 60.916 63.158 0.00 0.00 0.00 4.61
803 804 1.611851 CTCTGCTCTGGACCCCACT 60.612 63.158 0.00 0.00 0.00 4.00
830 831 2.025636 TCCTTCTCCTTTCCTCGGTT 57.974 50.000 0.00 0.00 0.00 4.44
866 867 2.082629 AAAACAAAAGCGGCTCGGGG 62.083 55.000 1.45 0.00 0.00 5.73
926 927 2.367512 AGAGGTGATGGGGGAGGC 60.368 66.667 0.00 0.00 0.00 4.70
944 953 6.333435 GGGGAGGCCTCTATAGTATCTAGTAT 59.667 46.154 31.36 0.00 0.00 2.12
948 957 7.057894 AGGCCTCTATAGTATCTAGTATGTGC 58.942 42.308 0.00 0.00 0.00 4.57
986 995 0.615850 GAGGAGTTTGGCCTAGTGCT 59.384 55.000 3.32 5.60 40.92 4.40
1004 1013 0.463295 CTGGAGATTGGCGTCATGCT 60.463 55.000 0.00 0.00 45.43 3.79
1110 1119 2.805546 CTGGAAGTAGGCGCGCTA 59.194 61.111 32.29 18.02 0.00 4.26
1226 1235 2.040178 GACGGGGACTGGTATGAAGAT 58.960 52.381 0.00 0.00 40.47 2.40
1281 1291 3.673484 TGCTTGAGCTTTGGCGCC 61.673 61.111 22.73 22.73 44.37 6.53
1327 1337 2.819595 CCGTGCCACCGAATCCTG 60.820 66.667 0.00 0.00 0.00 3.86
1357 1367 1.741770 CGGCCAAACCTCTTCCTCG 60.742 63.158 2.24 0.00 35.61 4.63
1456 1466 4.028490 GTGGTGATGTCCCCGGCA 62.028 66.667 0.00 0.00 0.00 5.69
1474 1484 3.423154 CCGGCGAGTTTGCAGTCC 61.423 66.667 9.30 0.00 36.28 3.85
1586 1596 1.599542 GTTGTGTGTCCTGTTGCTCTC 59.400 52.381 0.00 0.00 0.00 3.20
1703 1716 2.477754 GTGGAACTACAACTACCGCAAC 59.522 50.000 0.00 0.00 0.00 4.17
1721 1734 0.328258 ACTACCCACAACATGCTCCC 59.672 55.000 0.00 0.00 0.00 4.30
1724 1737 2.360350 CCACAACATGCTCCCGCT 60.360 61.111 0.00 0.00 36.97 5.52
1789 1811 4.424566 GCCGGGCGTCGTAGAACA 62.425 66.667 1.81 0.00 39.69 3.18
1819 1841 2.166050 TCGTACCTAAAATAGCACCGCA 59.834 45.455 0.00 0.00 0.00 5.69
1836 1858 2.184830 CATGACAGCCATCTGCCCG 61.185 63.158 0.00 0.00 44.10 6.13
2037 2059 1.118965 TCTCCGCAGTTTCCACCAGA 61.119 55.000 0.00 0.00 0.00 3.86
2320 2375 3.110178 CGAAGACGACGTTGGGGC 61.110 66.667 7.90 0.00 42.66 5.80
2409 2464 2.539338 GGCCTTGACGTTGTCGCAA 61.539 57.895 0.00 0.00 41.18 4.85
2544 2624 2.369203 CTGCCAGATGAGATGATCCACT 59.631 50.000 0.00 0.00 0.00 4.00
2580 2660 2.672874 CGTGTCATCAAATCACCATCGT 59.327 45.455 0.00 0.00 0.00 3.73
2583 2663 3.370672 TGTCATCAAATCACCATCGTTCG 59.629 43.478 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
397 398 1.978580 ACCACATTCTTCCTTCCGACT 59.021 47.619 0.00 0.00 0.00 4.18
552 553 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
553 554 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
554 555 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
555 556 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
556 557 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
557 558 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
558 559 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
559 560 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
560 561 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
561 562 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
562 563 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
563 564 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
568 569 9.515226 TGTTAAAATGCCTAGAAAGACAAGTAT 57.485 29.630 0.00 0.00 0.00 2.12
569 570 8.911918 TGTTAAAATGCCTAGAAAGACAAGTA 57.088 30.769 0.00 0.00 0.00 2.24
570 571 7.817418 TGTTAAAATGCCTAGAAAGACAAGT 57.183 32.000 0.00 0.00 0.00 3.16
571 572 8.352942 ACTTGTTAAAATGCCTAGAAAGACAAG 58.647 33.333 0.00 0.00 43.36 3.16
572 573 8.134895 CACTTGTTAAAATGCCTAGAAAGACAA 58.865 33.333 0.00 0.00 0.00 3.18
573 574 7.500892 TCACTTGTTAAAATGCCTAGAAAGACA 59.499 33.333 0.00 0.00 0.00 3.41
574 575 7.803659 GTCACTTGTTAAAATGCCTAGAAAGAC 59.196 37.037 0.00 0.00 0.00 3.01
575 576 7.719633 AGTCACTTGTTAAAATGCCTAGAAAGA 59.280 33.333 0.00 0.00 0.00 2.52
576 577 7.875971 AGTCACTTGTTAAAATGCCTAGAAAG 58.124 34.615 0.00 0.00 0.00 2.62
577 578 7.817418 AGTCACTTGTTAAAATGCCTAGAAA 57.183 32.000 0.00 0.00 0.00 2.52
578 579 7.934665 TGTAGTCACTTGTTAAAATGCCTAGAA 59.065 33.333 0.00 0.00 0.00 2.10
579 580 7.446769 TGTAGTCACTTGTTAAAATGCCTAGA 58.553 34.615 0.00 0.00 0.00 2.43
580 581 7.667043 TGTAGTCACTTGTTAAAATGCCTAG 57.333 36.000 0.00 0.00 0.00 3.02
581 582 9.158233 GTATGTAGTCACTTGTTAAAATGCCTA 57.842 33.333 0.00 0.00 0.00 3.93
582 583 7.148474 CGTATGTAGTCACTTGTTAAAATGCCT 60.148 37.037 0.00 0.00 0.00 4.75
583 584 6.959311 CGTATGTAGTCACTTGTTAAAATGCC 59.041 38.462 0.00 0.00 0.00 4.40
584 585 6.959311 CCGTATGTAGTCACTTGTTAAAATGC 59.041 38.462 0.00 0.00 0.00 3.56
585 586 8.246908 TCCGTATGTAGTCACTTGTTAAAATG 57.753 34.615 0.00 0.00 0.00 2.32
586 587 8.092687 ACTCCGTATGTAGTCACTTGTTAAAAT 58.907 33.333 0.00 0.00 0.00 1.82
587 588 7.436118 ACTCCGTATGTAGTCACTTGTTAAAA 58.564 34.615 0.00 0.00 0.00 1.52
588 589 6.985117 ACTCCGTATGTAGTCACTTGTTAAA 58.015 36.000 0.00 0.00 0.00 1.52
589 590 6.579666 ACTCCGTATGTAGTCACTTGTTAA 57.420 37.500 0.00 0.00 0.00 2.01
590 591 7.686438 TTACTCCGTATGTAGTCACTTGTTA 57.314 36.000 0.00 0.00 0.00 2.41
591 592 6.579666 TTACTCCGTATGTAGTCACTTGTT 57.420 37.500 0.00 0.00 0.00 2.83
592 593 6.579666 TTTACTCCGTATGTAGTCACTTGT 57.420 37.500 0.00 0.00 0.00 3.16
593 594 7.758076 TCATTTTACTCCGTATGTAGTCACTTG 59.242 37.037 0.00 0.00 0.00 3.16
594 595 7.833786 TCATTTTACTCCGTATGTAGTCACTT 58.166 34.615 0.00 0.00 0.00 3.16
595 596 7.122353 ACTCATTTTACTCCGTATGTAGTCACT 59.878 37.037 0.00 0.00 0.00 3.41
596 597 7.220300 CACTCATTTTACTCCGTATGTAGTCAC 59.780 40.741 0.00 0.00 0.00 3.67
597 598 7.121611 TCACTCATTTTACTCCGTATGTAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
598 599 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
599 600 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
600 601 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
601 602 8.692710 AGATTCACTCATTTTACTCCGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
602 603 7.556844 AGATTCACTCATTTTACTCCGTATGT 58.443 34.615 0.00 0.00 0.00 2.29
603 604 8.969267 GTAGATTCACTCATTTTACTCCGTATG 58.031 37.037 0.00 0.00 0.00 2.39
604 605 8.692710 TGTAGATTCACTCATTTTACTCCGTAT 58.307 33.333 0.00 0.00 0.00 3.06
605 606 7.972277 GTGTAGATTCACTCATTTTACTCCGTA 59.028 37.037 0.00 0.00 35.68 4.02
606 607 6.812160 GTGTAGATTCACTCATTTTACTCCGT 59.188 38.462 0.00 0.00 35.68 4.69
607 608 7.036220 AGTGTAGATTCACTCATTTTACTCCG 58.964 38.462 0.00 0.00 44.07 4.63
648 649 8.201464 TCAAATGACTAACACATACGGATGTAT 58.799 33.333 14.23 8.21 44.82 2.29
649 650 7.548967 TCAAATGACTAACACATACGGATGTA 58.451 34.615 14.23 0.00 44.82 2.29
651 652 6.902224 TCAAATGACTAACACATACGGATG 57.098 37.500 5.94 5.94 39.16 3.51
652 653 7.915293 TTTCAAATGACTAACACATACGGAT 57.085 32.000 0.00 0.00 0.00 4.18
653 654 7.389330 ACATTTCAAATGACTAACACATACGGA 59.611 33.333 17.30 0.00 0.00 4.69
654 655 7.526608 ACATTTCAAATGACTAACACATACGG 58.473 34.615 17.30 0.00 0.00 4.02
655 656 8.443160 AGACATTTCAAATGACTAACACATACG 58.557 33.333 17.30 0.00 0.00 3.06
658 659 9.725019 TCTAGACATTTCAAATGACTAACACAT 57.275 29.630 17.30 0.00 0.00 3.21
659 660 9.554395 TTCTAGACATTTCAAATGACTAACACA 57.446 29.630 17.30 0.05 0.00 3.72
679 680 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
680 681 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
681 682 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
682 683 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
683 684 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
684 685 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
685 686 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
686 687 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
687 688 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
688 689 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
689 690 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
690 691 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
691 692 8.731591 TTATACTCCCTCCGTTCCTAAATATT 57.268 34.615 0.00 0.00 0.00 1.28
692 693 8.912614 ATTATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
694 695 8.912614 ATATTATACTCCCTCCGTTCCTAAAT 57.087 34.615 0.00 0.00 0.00 1.40
756 757 1.017177 TTTGTGCGATCGTGCCTACC 61.017 55.000 17.81 0.00 0.00 3.18
757 758 0.370273 CTTTGTGCGATCGTGCCTAC 59.630 55.000 17.81 8.94 0.00 3.18
758 759 1.358725 GCTTTGTGCGATCGTGCCTA 61.359 55.000 17.81 0.00 0.00 3.93
759 760 2.680913 GCTTTGTGCGATCGTGCCT 61.681 57.895 17.81 0.00 0.00 4.75
760 761 2.202349 GCTTTGTGCGATCGTGCC 60.202 61.111 17.81 5.46 0.00 5.01
761 762 1.082169 TTGCTTTGTGCGATCGTGC 60.082 52.632 17.81 10.33 46.63 5.34
762 763 0.041400 TGTTGCTTTGTGCGATCGTG 60.041 50.000 17.81 1.94 46.63 4.35
763 764 0.660488 TTGTTGCTTTGTGCGATCGT 59.340 45.000 17.81 0.00 46.63 3.73
764 765 1.044725 GTTGTTGCTTTGTGCGATCG 58.955 50.000 11.69 11.69 46.63 3.69
765 766 1.780860 GTGTTGTTGCTTTGTGCGATC 59.219 47.619 0.00 0.00 46.63 3.69
766 767 1.405105 AGTGTTGTTGCTTTGTGCGAT 59.595 42.857 0.00 0.00 46.63 4.58
767 768 0.808125 AGTGTTGTTGCTTTGTGCGA 59.192 45.000 0.00 0.00 46.63 5.10
768 769 1.191096 GAGTGTTGTTGCTTTGTGCG 58.809 50.000 0.00 0.00 46.63 5.34
769 770 2.187707 CAGAGTGTTGTTGCTTTGTGC 58.812 47.619 0.00 0.00 43.25 4.57
770 771 2.159338 AGCAGAGTGTTGTTGCTTTGTG 60.159 45.455 0.00 0.00 45.28 3.33
771 772 2.094675 AGCAGAGTGTTGTTGCTTTGT 58.905 42.857 0.00 0.00 45.28 2.83
772 773 2.857592 AGCAGAGTGTTGTTGCTTTG 57.142 45.000 0.00 0.00 45.28 2.77
776 777 0.590195 CCAGAGCAGAGTGTTGTTGC 59.410 55.000 0.00 0.00 38.09 4.17
777 778 1.869767 GTCCAGAGCAGAGTGTTGTTG 59.130 52.381 0.00 0.00 0.00 3.33
778 779 1.202698 GGTCCAGAGCAGAGTGTTGTT 60.203 52.381 0.00 0.00 0.00 2.83
779 780 0.394565 GGTCCAGAGCAGAGTGTTGT 59.605 55.000 0.00 0.00 0.00 3.32
780 781 0.321122 GGGTCCAGAGCAGAGTGTTG 60.321 60.000 0.00 0.00 0.00 3.33
781 782 1.484444 GGGGTCCAGAGCAGAGTGTT 61.484 60.000 0.00 0.00 0.00 3.32
782 783 1.915769 GGGGTCCAGAGCAGAGTGT 60.916 63.158 0.00 0.00 0.00 3.55
783 784 1.915266 TGGGGTCCAGAGCAGAGTG 60.915 63.158 0.00 0.00 0.00 3.51
784 785 1.915769 GTGGGGTCCAGAGCAGAGT 60.916 63.158 0.00 0.00 32.34 3.24
785 786 1.197430 AAGTGGGGTCCAGAGCAGAG 61.197 60.000 0.00 0.00 32.34 3.35
786 787 0.768221 AAAGTGGGGTCCAGAGCAGA 60.768 55.000 0.00 0.00 32.34 4.26
787 788 0.322008 GAAAGTGGGGTCCAGAGCAG 60.322 60.000 0.00 0.00 32.34 4.24
788 789 0.768221 AGAAAGTGGGGTCCAGAGCA 60.768 55.000 0.00 0.00 32.34 4.26
789 790 0.035915 GAGAAAGTGGGGTCCAGAGC 60.036 60.000 0.00 0.00 32.34 4.09
790 791 0.247736 CGAGAAAGTGGGGTCCAGAG 59.752 60.000 0.00 0.00 32.34 3.35
791 792 0.471211 ACGAGAAAGTGGGGTCCAGA 60.471 55.000 0.00 0.00 32.34 3.86
792 793 0.396811 AACGAGAAAGTGGGGTCCAG 59.603 55.000 0.00 0.00 32.34 3.86
793 794 0.395312 GAACGAGAAAGTGGGGTCCA 59.605 55.000 0.00 0.00 0.00 4.02
794 795 0.321387 GGAACGAGAAAGTGGGGTCC 60.321 60.000 0.00 0.00 0.00 4.46
795 796 0.685660 AGGAACGAGAAAGTGGGGTC 59.314 55.000 0.00 0.00 0.00 4.46
796 797 1.071857 GAAGGAACGAGAAAGTGGGGT 59.928 52.381 0.00 0.00 0.00 4.95
797 798 1.348036 AGAAGGAACGAGAAAGTGGGG 59.652 52.381 0.00 0.00 0.00 4.96
798 799 2.613223 GGAGAAGGAACGAGAAAGTGGG 60.613 54.545 0.00 0.00 0.00 4.61
799 800 2.300437 AGGAGAAGGAACGAGAAAGTGG 59.700 50.000 0.00 0.00 0.00 4.00
800 801 3.669251 AGGAGAAGGAACGAGAAAGTG 57.331 47.619 0.00 0.00 0.00 3.16
801 802 4.503469 GGAAAGGAGAAGGAACGAGAAAGT 60.503 45.833 0.00 0.00 0.00 2.66
802 803 3.997681 GGAAAGGAGAAGGAACGAGAAAG 59.002 47.826 0.00 0.00 0.00 2.62
803 804 3.646637 AGGAAAGGAGAAGGAACGAGAAA 59.353 43.478 0.00 0.00 0.00 2.52
830 831 0.762418 TTTCGCCTCTCCCAAACAGA 59.238 50.000 0.00 0.00 0.00 3.41
899 900 1.918293 ATCACCTCTCCAACCGGCA 60.918 57.895 0.00 0.00 0.00 5.69
926 927 9.456147 AACTGCACATACTAGATACTATAGAGG 57.544 37.037 6.78 0.00 0.00 3.69
944 953 6.588204 TCTAAGGAAAAACTAGAACTGCACA 58.412 36.000 0.00 0.00 0.00 4.57
948 957 7.672240 ACTCCTCTAAGGAAAAACTAGAACTG 58.328 38.462 0.00 0.00 45.28 3.16
986 995 0.745486 CAGCATGACGCCAATCTCCA 60.745 55.000 0.00 0.00 44.04 3.86
1004 1013 1.097232 CGGCAGCAAAATCCTCATCA 58.903 50.000 0.00 0.00 0.00 3.07
1110 1119 3.637229 TCGAGCTTATTTCCGAGGATTCT 59.363 43.478 0.00 0.00 0.00 2.40
1357 1367 4.323104 CCTCCCATATAGCTTCAAGGCTAC 60.323 50.000 0.00 0.00 45.82 3.58
1456 1466 2.665185 GACTGCAAACTCGCCGGT 60.665 61.111 1.90 0.00 0.00 5.28
1469 1479 1.903877 AAGCCACTCCCGATGGACTG 61.904 60.000 0.00 0.00 39.87 3.51
1474 1484 1.450312 GTCCAAGCCACTCCCGATG 60.450 63.158 0.00 0.00 0.00 3.84
1586 1596 7.804600 TGATATTACAATACCGTAGTACAAGCG 59.195 37.037 0.38 0.00 0.00 4.68
1703 1716 0.744414 CGGGAGCATGTTGTGGGTAG 60.744 60.000 0.00 0.00 0.00 3.18
1721 1734 1.615107 GACGACTCCGACCAAAAGCG 61.615 60.000 0.00 0.00 39.50 4.68
1724 1737 1.007038 CCGACGACTCCGACCAAAA 60.007 57.895 0.00 0.00 39.50 2.44
1836 1858 3.142838 ATGTCCCTGCGCATTGGC 61.143 61.111 12.24 7.34 0.00 4.52
2320 2375 3.737172 CAAGACCTTTGGCGGCGG 61.737 66.667 9.78 1.54 0.00 6.13
2544 2624 1.392168 GACACGCAAGCGCACTTATTA 59.608 47.619 15.09 0.00 44.19 0.98
2559 2639 2.672874 ACGATGGTGATTTGATGACACG 59.327 45.455 0.00 0.00 35.68 4.49
2580 2660 3.367607 CGTGTTCATTTTTCCAAGCGAA 58.632 40.909 0.00 0.00 0.00 4.70
2583 2663 3.363341 TCCGTGTTCATTTTTCCAAGC 57.637 42.857 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.