Multiple sequence alignment - TraesCS3B01G043500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G043500 chr3B 100.000 5817 0 0 1 5817 22210448 22216264 0.000000e+00 10743.0
1 TraesCS3B01G043500 chr3B 91.933 595 38 4 1 592 22438554 22439141 0.000000e+00 824.0
2 TraesCS3B01G043500 chr3B 88.563 682 67 6 1 679 22384012 22384685 0.000000e+00 817.0
3 TraesCS3B01G043500 chr3B 96.596 235 6 1 819 1051 22218522 22218288 7.070000e-104 388.0
4 TraesCS3B01G043500 chr3B 94.043 235 11 3 1709 1942 22212212 22212444 2.580000e-93 353.0
5 TraesCS3B01G043500 chr3B 92.063 189 12 3 1820 2006 22212155 22212342 4.470000e-66 263.0
6 TraesCS3B01G043500 chr4B 97.920 4039 79 5 1781 5817 522489811 522493846 0.000000e+00 6988.0
7 TraesCS3B01G043500 chr4B 93.243 1110 39 20 820 1895 522488930 522490037 0.000000e+00 1602.0
8 TraesCS3B01G043500 chr3D 96.696 4025 79 16 1820 5817 179452917 179448920 0.000000e+00 6647.0
9 TraesCS3B01G043500 chr3D 95.450 1077 42 4 820 1895 179453799 179452729 0.000000e+00 1711.0
10 TraesCS3B01G043500 chr3D 96.983 232 6 1 820 1051 179446688 179446918 7.070000e-104 388.0
11 TraesCS3B01G043500 chr3D 93.137 102 6 1 674 774 325274190 325274089 1.310000e-31 148.0
12 TraesCS3B01G043500 chr1D 95.596 4019 107 21 1820 5817 447268675 447264706 0.000000e+00 6377.0
13 TraesCS3B01G043500 chr1D 94.480 942 44 5 955 1895 447269421 447268487 0.000000e+00 1445.0
14 TraesCS3B01G043500 chr4D 96.431 3867 86 15 1820 5665 340759397 340755562 0.000000e+00 6329.0
15 TraesCS3B01G043500 chr4D 95.822 1077 41 4 820 1895 340760282 340759209 0.000000e+00 1736.0
16 TraesCS3B01G043500 chr2D 95.526 2101 60 11 3588 5683 14984475 14982404 0.000000e+00 3328.0
17 TraesCS3B01G043500 chr2D 96.501 1829 59 3 1876 3699 15008756 15006928 0.000000e+00 3018.0
18 TraesCS3B01G043500 chr2D 95.398 1369 45 9 4323 5683 14997938 14996580 0.000000e+00 2163.0
19 TraesCS3B01G043500 chr2D 94.583 1366 58 8 4323 5683 14993191 14991837 0.000000e+00 2098.0
20 TraesCS3B01G043500 chr2D 94.718 1363 51 12 4323 5683 15002562 15001219 0.000000e+00 2098.0
21 TraesCS3B01G043500 chr2D 95.038 1048 48 3 1966 3013 87997865 87996822 0.000000e+00 1644.0
22 TraesCS3B01G043500 chr2D 92.138 1043 46 13 820 1840 15009651 15008623 0.000000e+00 1439.0
23 TraesCS3B01G043500 chr2D 92.118 850 52 6 824 1661 87998733 87997887 0.000000e+00 1184.0
24 TraesCS3B01G043500 chr2D 92.222 630 22 13 820 1423 18280472 18279844 0.000000e+00 867.0
25 TraesCS3B01G043500 chr2D 92.172 396 17 6 5292 5683 14990933 14990548 1.100000e-151 547.0
26 TraesCS3B01G043500 chr2D 96.117 103 4 0 5715 5817 14980903 14980801 1.000000e-37 169.0
27 TraesCS3B01G043500 chr2D 88.000 125 12 3 674 797 492391972 492392094 1.690000e-30 145.0
28 TraesCS3B01G043500 chr2D 100.000 32 0 0 5686 5717 14991819 14991788 6.290000e-05 60.2
29 TraesCS3B01G043500 chr2D 97.059 34 1 0 1536 1569 87997969 87997936 2.260000e-04 58.4
30 TraesCS3B01G043500 chr1A 95.941 1971 76 3 1957 3926 307690527 307692494 0.000000e+00 3193.0
31 TraesCS3B01G043500 chr1A 90.126 871 62 13 810 1661 307689620 307690485 0.000000e+00 1110.0
32 TraesCS3B01G043500 chr1A 84.861 753 45 24 5040 5771 307692487 307693191 0.000000e+00 695.0
33 TraesCS3B01G043500 chr1A 95.876 97 4 0 669 765 373317575 373317671 2.170000e-34 158.0
34 TraesCS3B01G043500 chr1A 94.118 102 4 2 674 774 265586499 265586599 2.810000e-33 154.0
35 TraesCS3B01G043500 chr2A 94.458 2075 90 12 1854 3928 158248869 158250918 0.000000e+00 3171.0
36 TraesCS3B01G043500 chr2A 91.549 1846 87 25 3993 5817 158250919 158252716 0.000000e+00 2481.0
37 TraesCS3B01G043500 chr2A 91.274 722 60 2 820 1541 158248080 158248798 0.000000e+00 981.0
38 TraesCS3B01G043500 chr2A 94.175 103 5 1 672 774 708034589 708034488 7.800000e-34 156.0
39 TraesCS3B01G043500 chr2A 100.000 54 0 0 1536 1589 158248819 158248872 3.710000e-17 100.0
40 TraesCS3B01G043500 chr2A 98.182 55 1 0 1556 1610 158248787 158248841 4.800000e-16 97.1
41 TraesCS3B01G043500 chr7D 85.605 3126 312 67 2458 5527 36849603 36846560 0.000000e+00 3153.0
42 TraesCS3B01G043500 chr5A 87.992 1524 150 18 2452 3945 555525402 555526922 0.000000e+00 1770.0
43 TraesCS3B01G043500 chr5A 91.071 112 6 4 668 776 533964314 533964204 1.310000e-31 148.0
44 TraesCS3B01G043500 chr6D 86.074 675 66 15 5 678 291797037 291797684 0.000000e+00 701.0
45 TraesCS3B01G043500 chr6D 85.588 680 71 15 1 679 291785923 291786576 0.000000e+00 688.0
46 TraesCS3B01G043500 chr6B 85.022 681 72 15 1 679 453265376 453266028 0.000000e+00 665.0
47 TraesCS3B01G043500 chr6B 85.022 681 72 15 1 679 537304566 537305218 0.000000e+00 665.0
48 TraesCS3B01G043500 chr6B 83.041 684 83 16 1 679 453158302 453158957 1.810000e-164 590.0
49 TraesCS3B01G043500 chr6B 80.832 673 115 13 11 679 11609262 11608600 3.110000e-142 516.0
50 TraesCS3B01G043500 chr1B 87.349 498 56 6 1967 2461 587596864 587597357 1.090000e-156 564.0
51 TraesCS3B01G043500 chr1B 97.872 94 1 1 674 766 371456427 371456334 1.680000e-35 161.0
52 TraesCS3B01G043500 chr6A 86.098 410 57 0 4 413 431271399 431270990 5.350000e-120 442.0
53 TraesCS3B01G043500 chr3A 92.169 166 13 0 514 679 21009349 21009184 9.740000e-58 235.0
54 TraesCS3B01G043500 chr3A 95.161 62 3 0 760 821 21009186 21009125 1.330000e-16 99.0
55 TraesCS3B01G043500 chr5D 95.000 100 3 2 668 767 495161381 495161478 7.800000e-34 156.0
56 TraesCS3B01G043500 chr5B 92.381 105 4 4 666 768 146805800 146805698 4.700000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G043500 chr3B 22210448 22216264 5816 False 10743.000000 10743 100.000000 1 5817 1 chr3B.!!$F1 5816
1 TraesCS3B01G043500 chr3B 22438554 22439141 587 False 824.000000 824 91.933000 1 592 1 chr3B.!!$F3 591
2 TraesCS3B01G043500 chr3B 22384012 22384685 673 False 817.000000 817 88.563000 1 679 1 chr3B.!!$F2 678
3 TraesCS3B01G043500 chr4B 522488930 522493846 4916 False 4295.000000 6988 95.581500 820 5817 2 chr4B.!!$F1 4997
4 TraesCS3B01G043500 chr3D 179448920 179453799 4879 True 4179.000000 6647 96.073000 820 5817 2 chr3D.!!$R2 4997
5 TraesCS3B01G043500 chr1D 447264706 447269421 4715 True 3911.000000 6377 95.038000 955 5817 2 chr1D.!!$R1 4862
6 TraesCS3B01G043500 chr4D 340755562 340760282 4720 True 4032.500000 6329 96.126500 820 5665 2 chr4D.!!$R1 4845
7 TraesCS3B01G043500 chr2D 15006928 15009651 2723 True 2228.500000 3018 94.319500 820 3699 2 chr2D.!!$R4 2879
8 TraesCS3B01G043500 chr2D 14980801 14984475 3674 True 1748.500000 3328 95.821500 3588 5817 2 chr2D.!!$R2 2229
9 TraesCS3B01G043500 chr2D 14990548 15002562 12014 True 1393.240000 2163 95.374200 4323 5717 5 chr2D.!!$R3 1394
10 TraesCS3B01G043500 chr2D 87996822 87998733 1911 True 962.133333 1644 94.738333 824 3013 3 chr2D.!!$R5 2189
11 TraesCS3B01G043500 chr2D 18279844 18280472 628 True 867.000000 867 92.222000 820 1423 1 chr2D.!!$R1 603
12 TraesCS3B01G043500 chr1A 307689620 307693191 3571 False 1666.000000 3193 90.309333 810 5771 3 chr1A.!!$F3 4961
13 TraesCS3B01G043500 chr2A 158248080 158252716 4636 False 1366.020000 3171 95.092600 820 5817 5 chr2A.!!$F1 4997
14 TraesCS3B01G043500 chr7D 36846560 36849603 3043 True 3153.000000 3153 85.605000 2458 5527 1 chr7D.!!$R1 3069
15 TraesCS3B01G043500 chr5A 555525402 555526922 1520 False 1770.000000 1770 87.992000 2452 3945 1 chr5A.!!$F1 1493
16 TraesCS3B01G043500 chr6D 291797037 291797684 647 False 701.000000 701 86.074000 5 678 1 chr6D.!!$F2 673
17 TraesCS3B01G043500 chr6D 291785923 291786576 653 False 688.000000 688 85.588000 1 679 1 chr6D.!!$F1 678
18 TraesCS3B01G043500 chr6B 453265376 453266028 652 False 665.000000 665 85.022000 1 679 1 chr6B.!!$F2 678
19 TraesCS3B01G043500 chr6B 537304566 537305218 652 False 665.000000 665 85.022000 1 679 1 chr6B.!!$F3 678
20 TraesCS3B01G043500 chr6B 453158302 453158957 655 False 590.000000 590 83.041000 1 679 1 chr6B.!!$F1 678
21 TraesCS3B01G043500 chr6B 11608600 11609262 662 True 516.000000 516 80.832000 11 679 1 chr6B.!!$R1 668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
549 556 0.099968 CGGCAAGGCATCAATCTGTG 59.900 55.000 0.00 0.00 0.00 3.66 F
801 808 0.106066 CATGGGGAATGCAAGGGCTA 60.106 55.000 0.00 0.00 41.91 3.93 F
1247 1301 0.744414 CCTGTTCGATCCGCCATTGT 60.744 55.000 0.00 0.00 0.00 2.71 F
1506 1562 2.869233 TCCTTTGTTTGCAGCTGAAC 57.131 45.000 20.43 14.56 0.00 3.18 F
2520 2697 3.181434 TGCAATGTTAGAAGTGGGAAGGT 60.181 43.478 0.00 0.00 0.00 3.50 F
2647 2830 4.087243 AGAGGAAGAGGAGGAAGGAAAT 57.913 45.455 0.00 0.00 0.00 2.17 F
3530 3749 1.026718 GGACACAAATCCTGGGAGCG 61.027 60.000 0.00 0.00 35.68 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1506 1562 2.571212 TGCATTGCCCTAATTCCTACG 58.429 47.619 6.12 0.00 0.00 3.51 R
2600 2780 2.909662 CCTCTTCCTCCTTGTCCTCTTT 59.090 50.000 0.00 0.00 0.00 2.52 R
2946 3165 1.813513 ATGCACCACTACTTCAGCAC 58.186 50.000 0.00 0.00 34.54 4.40 R
3285 3504 1.260544 AGCAGGAACCTTGCAATTCC 58.739 50.000 19.87 19.87 44.14 3.01 R
3339 3558 1.915266 CCTGCTCTGGGGTCAGTCA 60.915 63.158 0.00 0.00 41.59 3.41 R
4465 9351 2.680312 TTGTCCATCTAGCACTCTGC 57.320 50.000 0.00 0.00 45.46 4.26 R
4965 9852 1.089920 CTGGCTTCAAAGGATCACCG 58.910 55.000 0.00 0.00 41.83 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
284 288 6.154203 TGTACATTGTGATTTGAAGCCAAA 57.846 33.333 0.00 0.00 45.28 3.28
318 322 7.643528 TCTTGACGATGATATGAATGCTTAC 57.356 36.000 0.00 0.00 0.00 2.34
321 325 8.437360 TTGACGATGATATGAATGCTTACTTT 57.563 30.769 0.00 0.00 0.00 2.66
361 365 1.303309 CCTCATCGGACATTCAAGCC 58.697 55.000 0.00 0.00 33.16 4.35
397 401 0.533085 GCTGAAGGGAACGATAGGCC 60.533 60.000 0.00 0.00 43.77 5.19
416 420 4.030913 GGCCACATAGCTCCAGGTATATA 58.969 47.826 0.00 0.00 36.68 0.86
417 421 4.656112 GGCCACATAGCTCCAGGTATATAT 59.344 45.833 0.00 0.00 36.68 0.86
420 424 7.674348 GGCCACATAGCTCCAGGTATATATATA 59.326 40.741 0.00 0.00 36.68 0.86
421 425 8.744652 GCCACATAGCTCCAGGTATATATATAG 58.255 40.741 2.53 0.00 36.68 1.31
427 431 8.927675 AGCTCCAGGTATATATATAGCAGTAC 57.072 38.462 26.07 14.94 38.71 2.73
428 432 7.945664 AGCTCCAGGTATATATATAGCAGTACC 59.054 40.741 26.07 15.32 38.71 3.34
429 433 7.945664 GCTCCAGGTATATATATAGCAGTACCT 59.054 40.741 26.07 16.95 41.81 3.08
518 525 6.381133 TGCTACAATCTTATCTCCTGACAGAA 59.619 38.462 3.32 0.00 0.00 3.02
534 541 1.672363 CAGAATATGCTCAAAGCGGCA 59.328 47.619 1.45 0.00 46.26 5.69
536 543 2.357009 AGAATATGCTCAAAGCGGCAAG 59.643 45.455 1.45 0.00 46.26 4.01
537 544 1.027357 ATATGCTCAAAGCGGCAAGG 58.973 50.000 1.45 0.00 46.26 3.61
538 545 1.656818 TATGCTCAAAGCGGCAAGGC 61.657 55.000 1.45 0.00 46.26 4.35
539 546 3.673484 GCTCAAAGCGGCAAGGCA 61.673 61.111 1.45 0.00 34.64 4.75
540 547 2.998279 GCTCAAAGCGGCAAGGCAT 61.998 57.895 1.45 0.00 34.64 4.40
541 548 1.138247 CTCAAAGCGGCAAGGCATC 59.862 57.895 1.45 0.00 34.64 3.91
542 549 1.588824 CTCAAAGCGGCAAGGCATCA 61.589 55.000 1.45 0.00 34.64 3.07
543 550 1.177895 TCAAAGCGGCAAGGCATCAA 61.178 50.000 1.45 0.00 34.64 2.57
544 551 0.108520 CAAAGCGGCAAGGCATCAAT 60.109 50.000 1.45 0.00 34.64 2.57
545 552 0.174162 AAAGCGGCAAGGCATCAATC 59.826 50.000 1.45 0.00 34.64 2.67
546 553 0.682209 AAGCGGCAAGGCATCAATCT 60.682 50.000 1.45 0.00 34.64 2.40
547 554 1.065273 GCGGCAAGGCATCAATCTG 59.935 57.895 0.00 0.00 0.00 2.90
548 555 1.660560 GCGGCAAGGCATCAATCTGT 61.661 55.000 0.00 0.00 0.00 3.41
549 556 0.099968 CGGCAAGGCATCAATCTGTG 59.900 55.000 0.00 0.00 0.00 3.66
550 557 0.458669 GGCAAGGCATCAATCTGTGG 59.541 55.000 0.00 0.00 0.00 4.17
551 558 0.458669 GCAAGGCATCAATCTGTGGG 59.541 55.000 0.00 0.00 0.00 4.61
552 559 1.108776 CAAGGCATCAATCTGTGGGG 58.891 55.000 0.00 0.00 0.00 4.96
553 560 1.002069 AAGGCATCAATCTGTGGGGA 58.998 50.000 0.00 0.00 0.00 4.81
554 561 1.229131 AGGCATCAATCTGTGGGGAT 58.771 50.000 0.00 0.00 0.00 3.85
555 562 1.133575 AGGCATCAATCTGTGGGGATG 60.134 52.381 0.00 0.00 40.00 3.51
556 563 1.410648 GGCATCAATCTGTGGGGATGT 60.411 52.381 0.00 0.00 39.39 3.06
557 564 2.381911 GCATCAATCTGTGGGGATGTT 58.618 47.619 0.00 0.00 39.39 2.71
558 565 2.762327 GCATCAATCTGTGGGGATGTTT 59.238 45.455 0.00 0.00 39.39 2.83
559 566 3.953612 GCATCAATCTGTGGGGATGTTTA 59.046 43.478 0.00 0.00 39.39 2.01
560 567 4.202050 GCATCAATCTGTGGGGATGTTTAC 60.202 45.833 0.00 0.00 39.39 2.01
561 568 4.649267 TCAATCTGTGGGGATGTTTACA 57.351 40.909 0.00 0.00 0.00 2.41
562 569 4.588899 TCAATCTGTGGGGATGTTTACAG 58.411 43.478 0.00 0.00 41.34 2.74
563 570 4.042809 TCAATCTGTGGGGATGTTTACAGT 59.957 41.667 0.00 0.00 40.91 3.55
564 571 4.657814 ATCTGTGGGGATGTTTACAGTT 57.342 40.909 0.00 0.00 40.91 3.16
565 572 4.447138 TCTGTGGGGATGTTTACAGTTT 57.553 40.909 0.00 0.00 40.91 2.66
566 573 4.394729 TCTGTGGGGATGTTTACAGTTTC 58.605 43.478 0.00 0.00 40.91 2.78
567 574 3.142951 TGTGGGGATGTTTACAGTTTCG 58.857 45.455 0.00 0.00 0.00 3.46
568 575 2.486592 GTGGGGATGTTTACAGTTTCGG 59.513 50.000 0.00 0.00 0.00 4.30
569 576 2.089201 GGGGATGTTTACAGTTTCGGG 58.911 52.381 0.00 0.00 0.00 5.14
570 577 2.290450 GGGGATGTTTACAGTTTCGGGA 60.290 50.000 0.00 0.00 0.00 5.14
571 578 3.617284 GGGATGTTTACAGTTTCGGGAT 58.383 45.455 0.00 0.00 0.00 3.85
572 579 4.384427 GGGGATGTTTACAGTTTCGGGATA 60.384 45.833 0.00 0.00 0.00 2.59
573 580 4.814771 GGGATGTTTACAGTTTCGGGATAG 59.185 45.833 0.00 0.00 0.00 2.08
574 581 5.425630 GGATGTTTACAGTTTCGGGATAGT 58.574 41.667 0.00 0.00 0.00 2.12
575 582 6.407299 GGGATGTTTACAGTTTCGGGATAGTA 60.407 42.308 0.00 0.00 0.00 1.82
576 583 6.478016 GGATGTTTACAGTTTCGGGATAGTAC 59.522 42.308 0.00 0.00 0.00 2.73
577 584 6.594788 TGTTTACAGTTTCGGGATAGTACT 57.405 37.500 0.00 0.00 0.00 2.73
578 585 6.624423 TGTTTACAGTTTCGGGATAGTACTC 58.376 40.000 0.00 0.00 0.00 2.59
579 586 6.435277 TGTTTACAGTTTCGGGATAGTACTCT 59.565 38.462 0.00 0.00 0.00 3.24
580 587 7.039504 TGTTTACAGTTTCGGGATAGTACTCTT 60.040 37.037 0.00 0.00 0.00 2.85
581 588 8.462016 GTTTACAGTTTCGGGATAGTACTCTTA 58.538 37.037 0.00 0.00 0.00 2.10
582 589 6.696441 ACAGTTTCGGGATAGTACTCTTAG 57.304 41.667 0.00 0.00 0.00 2.18
583 590 6.421485 ACAGTTTCGGGATAGTACTCTTAGA 58.579 40.000 0.00 0.00 0.00 2.10
584 591 6.543100 ACAGTTTCGGGATAGTACTCTTAGAG 59.457 42.308 7.82 7.82 35.52 2.43
585 592 6.766944 CAGTTTCGGGATAGTACTCTTAGAGA 59.233 42.308 16.95 0.00 33.32 3.10
586 593 7.446013 CAGTTTCGGGATAGTACTCTTAGAGAT 59.554 40.741 16.95 0.00 33.32 2.75
587 594 7.446013 AGTTTCGGGATAGTACTCTTAGAGATG 59.554 40.741 16.95 0.00 33.32 2.90
588 595 5.247084 TCGGGATAGTACTCTTAGAGATGC 58.753 45.833 16.95 4.06 33.32 3.91
589 596 5.013287 TCGGGATAGTACTCTTAGAGATGCT 59.987 44.000 16.95 12.06 33.32 3.79
590 597 5.353123 CGGGATAGTACTCTTAGAGATGCTC 59.647 48.000 16.95 5.79 33.32 4.26
591 598 6.242396 GGGATAGTACTCTTAGAGATGCTCA 58.758 44.000 16.95 0.00 33.32 4.26
592 599 6.889722 GGGATAGTACTCTTAGAGATGCTCAT 59.110 42.308 16.95 1.44 33.32 2.90
593 600 7.396055 GGGATAGTACTCTTAGAGATGCTCATT 59.604 40.741 16.95 0.00 33.32 2.57
594 601 8.243426 GGATAGTACTCTTAGAGATGCTCATTG 58.757 40.741 16.95 0.00 33.32 2.82
595 602 6.403866 AGTACTCTTAGAGATGCTCATTGG 57.596 41.667 16.95 0.00 33.32 3.16
596 603 4.070630 ACTCTTAGAGATGCTCATTGGC 57.929 45.455 16.95 0.00 33.32 4.52
597 604 3.453717 ACTCTTAGAGATGCTCATTGGCA 59.546 43.478 16.95 2.90 38.63 4.92
598 605 4.080695 ACTCTTAGAGATGCTCATTGGCAA 60.081 41.667 16.95 0.68 38.18 4.52
599 606 4.847198 TCTTAGAGATGCTCATTGGCAAA 58.153 39.130 3.01 0.00 45.68 3.68
600 607 5.255687 TCTTAGAGATGCTCATTGGCAAAA 58.744 37.500 3.01 0.00 45.68 2.44
601 608 5.356190 TCTTAGAGATGCTCATTGGCAAAAG 59.644 40.000 3.01 6.31 45.68 2.27
602 609 3.693807 AGAGATGCTCATTGGCAAAAGA 58.306 40.909 14.94 10.46 45.68 2.52
603 610 3.442977 AGAGATGCTCATTGGCAAAAGAC 59.557 43.478 14.94 8.18 45.68 3.01
604 611 2.494870 AGATGCTCATTGGCAAAAGACC 59.505 45.455 14.94 4.76 45.68 3.85
605 612 0.597568 TGCTCATTGGCAAAAGACCG 59.402 50.000 14.94 3.45 39.43 4.79
606 613 0.881118 GCTCATTGGCAAAAGACCGA 59.119 50.000 14.94 1.27 0.00 4.69
607 614 1.401539 GCTCATTGGCAAAAGACCGAC 60.402 52.381 14.94 0.00 0.00 4.79
608 615 1.879380 CTCATTGGCAAAAGACCGACA 59.121 47.619 3.01 0.00 0.00 4.35
609 616 1.879380 TCATTGGCAAAAGACCGACAG 59.121 47.619 3.01 0.00 0.00 3.51
610 617 1.879380 CATTGGCAAAAGACCGACAGA 59.121 47.619 3.01 0.00 0.00 3.41
611 618 1.305201 TTGGCAAAAGACCGACAGAC 58.695 50.000 0.00 0.00 0.00 3.51
612 619 0.534203 TGGCAAAAGACCGACAGACC 60.534 55.000 0.00 0.00 0.00 3.85
613 620 1.235281 GGCAAAAGACCGACAGACCC 61.235 60.000 0.00 0.00 0.00 4.46
614 621 0.250338 GCAAAAGACCGACAGACCCT 60.250 55.000 0.00 0.00 0.00 4.34
615 622 1.001633 GCAAAAGACCGACAGACCCTA 59.998 52.381 0.00 0.00 0.00 3.53
616 623 2.354805 GCAAAAGACCGACAGACCCTAT 60.355 50.000 0.00 0.00 0.00 2.57
617 624 3.262420 CAAAAGACCGACAGACCCTATG 58.738 50.000 0.00 0.00 0.00 2.23
618 625 2.233305 AAGACCGACAGACCCTATGT 57.767 50.000 0.00 0.00 0.00 2.29
619 626 2.233305 AGACCGACAGACCCTATGTT 57.767 50.000 0.00 0.00 0.00 2.71
620 627 2.537143 AGACCGACAGACCCTATGTTT 58.463 47.619 0.00 0.00 0.00 2.83
621 628 2.233922 AGACCGACAGACCCTATGTTTG 59.766 50.000 0.00 0.00 35.27 2.93
622 629 2.232941 GACCGACAGACCCTATGTTTGA 59.767 50.000 0.00 0.00 33.42 2.69
623 630 2.233922 ACCGACAGACCCTATGTTTGAG 59.766 50.000 0.00 0.00 33.42 3.02
624 631 2.496070 CCGACAGACCCTATGTTTGAGA 59.504 50.000 0.00 0.00 33.42 3.27
625 632 3.056107 CCGACAGACCCTATGTTTGAGAA 60.056 47.826 0.00 0.00 33.42 2.87
626 633 4.383118 CCGACAGACCCTATGTTTGAGAAT 60.383 45.833 0.00 0.00 33.42 2.40
627 634 4.568359 CGACAGACCCTATGTTTGAGAATG 59.432 45.833 0.00 0.00 33.42 2.67
628 635 5.624509 CGACAGACCCTATGTTTGAGAATGA 60.625 44.000 0.00 0.00 33.42 2.57
629 636 6.126863 ACAGACCCTATGTTTGAGAATGAA 57.873 37.500 0.00 0.00 33.42 2.57
630 637 5.940470 ACAGACCCTATGTTTGAGAATGAAC 59.060 40.000 0.00 0.00 33.42 3.18
631 638 6.176183 CAGACCCTATGTTTGAGAATGAACT 58.824 40.000 0.00 0.00 30.75 3.01
632 639 6.314896 CAGACCCTATGTTTGAGAATGAACTC 59.685 42.308 0.00 0.00 37.42 3.01
633 640 6.013379 AGACCCTATGTTTGAGAATGAACTCA 60.013 38.462 0.00 0.00 43.83 3.41
641 648 3.084039 TGAGAATGAACTCAACATGGCC 58.916 45.455 0.00 0.00 42.79 5.36
642 649 3.084039 GAGAATGAACTCAACATGGCCA 58.916 45.455 8.56 8.56 36.95 5.36
643 650 3.499338 AGAATGAACTCAACATGGCCAA 58.501 40.909 10.96 0.00 0.00 4.52
644 651 3.256631 AGAATGAACTCAACATGGCCAAC 59.743 43.478 10.96 0.00 0.00 3.77
645 652 2.363306 TGAACTCAACATGGCCAACT 57.637 45.000 10.96 0.00 0.00 3.16
646 653 2.665165 TGAACTCAACATGGCCAACTT 58.335 42.857 10.96 0.00 0.00 2.66
647 654 3.030291 TGAACTCAACATGGCCAACTTT 58.970 40.909 10.96 0.00 0.00 2.66
648 655 3.181477 TGAACTCAACATGGCCAACTTTG 60.181 43.478 10.96 13.71 0.00 2.77
649 656 2.387757 ACTCAACATGGCCAACTTTGT 58.612 42.857 10.96 6.73 0.00 2.83
650 657 2.101249 ACTCAACATGGCCAACTTTGTG 59.899 45.455 10.96 15.90 0.00 3.33
651 658 1.202510 TCAACATGGCCAACTTTGTGC 60.203 47.619 10.96 0.00 0.00 4.57
652 659 0.829333 AACATGGCCAACTTTGTGCA 59.171 45.000 10.96 0.00 0.00 4.57
653 660 0.390124 ACATGGCCAACTTTGTGCAG 59.610 50.000 10.96 0.00 0.00 4.41
654 661 0.675083 CATGGCCAACTTTGTGCAGA 59.325 50.000 10.96 0.00 0.00 4.26
655 662 0.963962 ATGGCCAACTTTGTGCAGAG 59.036 50.000 10.96 0.00 0.00 3.35
656 663 1.108727 TGGCCAACTTTGTGCAGAGG 61.109 55.000 0.61 0.00 0.00 3.69
657 664 0.823356 GGCCAACTTTGTGCAGAGGA 60.823 55.000 0.00 0.00 0.00 3.71
658 665 1.032014 GCCAACTTTGTGCAGAGGAA 58.968 50.000 0.00 0.00 0.00 3.36
659 666 1.269257 GCCAACTTTGTGCAGAGGAAC 60.269 52.381 0.00 0.00 0.00 3.62
661 668 3.476552 CCAACTTTGTGCAGAGGAACTA 58.523 45.455 0.00 0.00 41.55 2.24
662 669 4.074970 CCAACTTTGTGCAGAGGAACTAT 58.925 43.478 0.00 0.00 41.55 2.12
663 670 4.154918 CCAACTTTGTGCAGAGGAACTATC 59.845 45.833 0.00 0.00 41.55 2.08
664 671 3.944087 ACTTTGTGCAGAGGAACTATCC 58.056 45.455 0.00 0.00 46.98 2.59
681 688 9.181061 GGAACTATCCAGATAAGATACTACTCC 57.819 40.741 0.00 0.00 45.79 3.85
682 689 9.181061 GAACTATCCAGATAAGATACTACTCCC 57.819 40.741 0.00 0.00 0.00 4.30
683 690 8.471302 ACTATCCAGATAAGATACTACTCCCT 57.529 38.462 0.00 0.00 0.00 4.20
684 691 8.554011 ACTATCCAGATAAGATACTACTCCCTC 58.446 40.741 0.00 0.00 0.00 4.30
685 692 7.597850 ATCCAGATAAGATACTACTCCCTCT 57.402 40.000 0.00 0.00 0.00 3.69
686 693 8.703142 ATCCAGATAAGATACTACTCCCTCTA 57.297 38.462 0.00 0.00 0.00 2.43
687 694 8.703142 TCCAGATAAGATACTACTCCCTCTAT 57.297 38.462 0.00 0.00 0.00 1.98
688 695 9.800716 TCCAGATAAGATACTACTCCCTCTATA 57.199 37.037 0.00 0.00 0.00 1.31
752 759 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
753 760 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
754 761 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
755 762 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
756 763 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
757 764 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
758 765 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
759 766 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
760 767 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
761 768 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
762 769 8.995027 TTATATTAGTTTACGGAGGGAGTACA 57.005 34.615 0.00 0.00 0.00 2.90
763 770 9.592196 TTATATTAGTTTACGGAGGGAGTACAT 57.408 33.333 0.00 0.00 0.00 2.29
765 772 9.765295 ATATTAGTTTACGGAGGGAGTACATAT 57.235 33.333 0.00 0.00 0.00 1.78
766 773 7.902920 TTAGTTTACGGAGGGAGTACATATT 57.097 36.000 0.00 0.00 0.00 1.28
767 774 8.995027 TTAGTTTACGGAGGGAGTACATATTA 57.005 34.615 0.00 0.00 0.00 0.98
768 775 9.592196 TTAGTTTACGGAGGGAGTACATATTAT 57.408 33.333 0.00 0.00 0.00 1.28
769 776 8.488308 AGTTTACGGAGGGAGTACATATTATT 57.512 34.615 0.00 0.00 0.00 1.40
770 777 8.365647 AGTTTACGGAGGGAGTACATATTATTG 58.634 37.037 0.00 0.00 0.00 1.90
771 778 8.362639 GTTTACGGAGGGAGTACATATTATTGA 58.637 37.037 0.00 0.00 0.00 2.57
772 779 8.660295 TTACGGAGGGAGTACATATTATTGAT 57.340 34.615 0.00 0.00 0.00 2.57
773 780 6.936279 ACGGAGGGAGTACATATTATTGATG 58.064 40.000 0.00 0.00 0.00 3.07
774 781 5.812642 CGGAGGGAGTACATATTATTGATGC 59.187 44.000 0.00 0.00 0.00 3.91
775 782 6.574269 CGGAGGGAGTACATATTATTGATGCA 60.574 42.308 0.00 0.00 0.00 3.96
776 783 6.595716 GGAGGGAGTACATATTATTGATGCAC 59.404 42.308 0.00 0.00 0.00 4.57
777 784 6.166279 AGGGAGTACATATTATTGATGCACG 58.834 40.000 0.00 0.00 0.00 5.34
778 785 5.932303 GGGAGTACATATTATTGATGCACGT 59.068 40.000 0.00 0.00 0.00 4.49
779 786 6.090898 GGGAGTACATATTATTGATGCACGTC 59.909 42.308 0.00 0.00 0.00 4.34
780 787 6.868864 GGAGTACATATTATTGATGCACGTCT 59.131 38.462 0.00 0.00 0.00 4.18
781 788 7.062371 GGAGTACATATTATTGATGCACGTCTC 59.938 40.741 0.00 0.00 0.00 3.36
782 789 6.868864 AGTACATATTATTGATGCACGTCTCC 59.131 38.462 0.00 0.00 0.00 3.71
783 790 5.610398 ACATATTATTGATGCACGTCTCCA 58.390 37.500 0.00 0.00 0.00 3.86
784 791 6.233434 ACATATTATTGATGCACGTCTCCAT 58.767 36.000 0.00 0.00 0.00 3.41
785 792 6.148315 ACATATTATTGATGCACGTCTCCATG 59.852 38.462 0.00 0.00 0.00 3.66
786 793 1.671979 ATTGATGCACGTCTCCATGG 58.328 50.000 4.97 4.97 0.00 3.66
787 794 0.392863 TTGATGCACGTCTCCATGGG 60.393 55.000 13.02 2.57 0.00 4.00
788 795 1.524621 GATGCACGTCTCCATGGGG 60.525 63.158 13.02 9.18 0.00 4.96
789 796 1.971505 GATGCACGTCTCCATGGGGA 61.972 60.000 11.36 11.36 42.29 4.81
790 797 1.561769 ATGCACGTCTCCATGGGGAA 61.562 55.000 18.26 0.00 44.38 3.97
791 798 1.224592 GCACGTCTCCATGGGGAAT 59.775 57.895 18.26 4.58 44.38 3.01
792 799 1.097547 GCACGTCTCCATGGGGAATG 61.098 60.000 18.26 18.71 44.38 2.67
793 800 1.097547 CACGTCTCCATGGGGAATGC 61.098 60.000 18.26 2.78 44.38 3.56
794 801 1.224315 CGTCTCCATGGGGAATGCA 59.776 57.895 18.26 0.00 44.38 3.96
795 802 0.394216 CGTCTCCATGGGGAATGCAA 60.394 55.000 18.26 0.00 44.38 4.08
796 803 1.396653 GTCTCCATGGGGAATGCAAG 58.603 55.000 18.26 0.46 44.38 4.01
797 804 0.259647 TCTCCATGGGGAATGCAAGG 59.740 55.000 13.43 0.00 44.38 3.61
798 805 0.757935 CTCCATGGGGAATGCAAGGG 60.758 60.000 5.34 0.00 44.38 3.95
799 806 2.437396 CCATGGGGAATGCAAGGGC 61.437 63.158 2.85 0.00 37.06 5.19
800 807 1.382146 CATGGGGAATGCAAGGGCT 60.382 57.895 0.00 0.00 41.91 5.19
801 808 0.106066 CATGGGGAATGCAAGGGCTA 60.106 55.000 0.00 0.00 41.91 3.93
802 809 0.862554 ATGGGGAATGCAAGGGCTAT 59.137 50.000 0.00 0.00 41.91 2.97
803 810 1.528600 TGGGGAATGCAAGGGCTATA 58.471 50.000 0.00 0.00 41.91 1.31
804 811 2.072973 TGGGGAATGCAAGGGCTATAT 58.927 47.619 0.00 0.00 41.91 0.86
805 812 2.041620 TGGGGAATGCAAGGGCTATATC 59.958 50.000 0.00 0.00 41.91 1.63
806 813 2.621668 GGGGAATGCAAGGGCTATATCC 60.622 54.545 0.00 0.00 41.91 2.59
807 814 2.041620 GGGAATGCAAGGGCTATATCCA 59.958 50.000 0.00 0.00 41.91 3.41
808 815 3.500289 GGGAATGCAAGGGCTATATCCAA 60.500 47.826 0.00 0.00 41.91 3.53
809 816 3.760684 GGAATGCAAGGGCTATATCCAAG 59.239 47.826 0.00 0.00 41.91 3.61
810 817 2.276732 TGCAAGGGCTATATCCAAGC 57.723 50.000 0.00 0.00 41.91 4.01
1001 1015 2.032528 CAGGTGCCACGTGGACAT 59.967 61.111 38.30 25.26 37.39 3.06
1073 1087 1.074926 ACCCGATCCAGAGCATCCT 60.075 57.895 0.00 0.00 33.66 3.24
1083 1100 1.225704 GAGCATCCTGTTCCCCCTG 59.774 63.158 0.00 0.00 0.00 4.45
1097 1114 2.444256 CCCTGTCCTCCCCCGATTC 61.444 68.421 0.00 0.00 0.00 2.52
1247 1301 0.744414 CCTGTTCGATCCGCCATTGT 60.744 55.000 0.00 0.00 0.00 2.71
1506 1562 2.869233 TCCTTTGTTTGCAGCTGAAC 57.131 45.000 20.43 14.56 0.00 3.18
1522 1578 3.869065 CTGAACGTAGGAATTAGGGCAA 58.131 45.455 0.00 0.00 0.00 4.52
1726 1809 7.985634 ATGTTGTTTACTTACTTTTGCTGTG 57.014 32.000 0.00 0.00 0.00 3.66
1727 1810 7.147143 TGTTGTTTACTTACTTTTGCTGTGA 57.853 32.000 0.00 0.00 0.00 3.58
1728 1811 7.594714 TGTTGTTTACTTACTTTTGCTGTGAA 58.405 30.769 0.00 0.00 0.00 3.18
1729 1812 8.082852 TGTTGTTTACTTACTTTTGCTGTGAAA 58.917 29.630 0.00 0.00 0.00 2.69
1730 1813 8.370321 GTTGTTTACTTACTTTTGCTGTGAAAC 58.630 33.333 0.00 0.00 37.35 2.78
2520 2697 3.181434 TGCAATGTTAGAAGTGGGAAGGT 60.181 43.478 0.00 0.00 0.00 3.50
2600 2780 7.493645 CAGTAGTGCATGAAGAAGATTACATGA 59.506 37.037 0.00 0.00 41.45 3.07
2647 2830 4.087243 AGAGGAAGAGGAGGAAGGAAAT 57.913 45.455 0.00 0.00 0.00 2.17
2656 2854 4.803452 AGGAGGAAGGAAATGAACAACAA 58.197 39.130 0.00 0.00 0.00 2.83
2696 2903 5.369409 AGAGGAAGATGAAGATGATGCAA 57.631 39.130 0.00 0.00 0.00 4.08
2702 2909 7.778853 AGGAAGATGAAGATGATGCAAACTTAT 59.221 33.333 0.00 0.00 0.00 1.73
2946 3165 7.395190 TGGATGAACTTTATGTTGATTCAGG 57.605 36.000 0.00 0.00 33.75 3.86
2949 3168 6.012658 TGAACTTTATGTTGATTCAGGTGC 57.987 37.500 0.00 0.00 39.30 5.01
2950 3169 5.769662 TGAACTTTATGTTGATTCAGGTGCT 59.230 36.000 0.00 0.00 39.30 4.40
3489 3708 9.209175 CCAGGAAGCACAATATACTAGAATTAC 57.791 37.037 0.00 0.00 0.00 1.89
3530 3749 1.026718 GGACACAAATCCTGGGAGCG 61.027 60.000 0.00 0.00 35.68 5.03
3669 3892 6.037610 CCTTTCATTGGTATGTGTTAGCTCTC 59.962 42.308 0.00 0.00 33.34 3.20
3670 3893 5.939764 TCATTGGTATGTGTTAGCTCTCT 57.060 39.130 0.00 0.00 33.34 3.10
3676 3899 8.718102 TTGGTATGTGTTAGCTCTCTTATTTC 57.282 34.615 0.00 0.00 0.00 2.17
3998 4259 3.314913 CACACCATAGTTCTTGTTGCACA 59.685 43.478 0.00 0.00 0.00 4.57
3999 4260 3.315191 ACACCATAGTTCTTGTTGCACAC 59.685 43.478 0.00 0.00 0.00 3.82
4000 4261 2.884639 ACCATAGTTCTTGTTGCACACC 59.115 45.455 0.00 0.00 0.00 4.16
4001 4262 2.884012 CCATAGTTCTTGTTGCACACCA 59.116 45.455 0.00 0.00 0.00 4.17
4002 4263 3.507233 CCATAGTTCTTGTTGCACACCAT 59.493 43.478 0.00 0.00 0.00 3.55
4003 4264 4.699735 CCATAGTTCTTGTTGCACACCATA 59.300 41.667 0.00 0.00 0.00 2.74
4004 4265 5.163723 CCATAGTTCTTGTTGCACACCATAG 60.164 44.000 0.00 0.00 0.00 2.23
4005 4266 3.820557 AGTTCTTGTTGCACACCATAGT 58.179 40.909 0.00 0.00 0.00 2.12
4006 4267 4.207165 AGTTCTTGTTGCACACCATAGTT 58.793 39.130 0.00 0.00 0.00 2.24
4007 4268 4.275936 AGTTCTTGTTGCACACCATAGTTC 59.724 41.667 0.00 0.00 0.00 3.01
4008 4269 4.085357 TCTTGTTGCACACCATAGTTCT 57.915 40.909 0.00 0.00 0.00 3.01
4009 4270 4.460263 TCTTGTTGCACACCATAGTTCTT 58.540 39.130 0.00 0.00 0.00 2.52
4010 4271 4.275689 TCTTGTTGCACACCATAGTTCTTG 59.724 41.667 0.00 0.00 0.00 3.02
4011 4272 3.550820 TGTTGCACACCATAGTTCTTGT 58.449 40.909 0.00 0.00 0.00 3.16
4012 4273 3.951037 TGTTGCACACCATAGTTCTTGTT 59.049 39.130 0.00 0.00 0.00 2.83
4013 4274 4.202000 TGTTGCACACCATAGTTCTTGTTG 60.202 41.667 0.00 0.00 0.00 3.33
4014 4275 3.550820 TGCACACCATAGTTCTTGTTGT 58.449 40.909 0.00 0.00 0.00 3.32
4015 4276 4.709250 TGCACACCATAGTTCTTGTTGTA 58.291 39.130 0.00 0.00 0.00 2.41
4016 4277 4.513692 TGCACACCATAGTTCTTGTTGTAC 59.486 41.667 0.00 0.00 0.00 2.90
4384 4645 7.917505 GTGTTCAACAGGATGATTTTGGATATC 59.082 37.037 0.00 0.00 39.69 1.63
4693 9579 5.412594 TGTCTCTGCCATCTACAAATCAAAC 59.587 40.000 0.00 0.00 0.00 2.93
4965 9852 3.023832 AGGGCATAGGTACACAAATTGC 58.976 45.455 0.00 0.00 0.00 3.56
5146 10042 2.156917 CAGATGCAAGAGCTCCAACAA 58.843 47.619 10.93 0.00 42.74 2.83
5438 15128 0.250901 TTTGCTCCTCCAAGGACTGC 60.251 55.000 0.00 0.00 40.06 4.40
5439 15129 1.130054 TTGCTCCTCCAAGGACTGCT 61.130 55.000 8.24 0.00 40.06 4.24
5440 15130 0.252239 TGCTCCTCCAAGGACTGCTA 60.252 55.000 8.24 0.00 40.06 3.49
5441 15131 0.176910 GCTCCTCCAAGGACTGCTAC 59.823 60.000 0.00 0.00 40.06 3.58
5442 15132 1.859302 CTCCTCCAAGGACTGCTACT 58.141 55.000 0.00 0.00 40.06 2.57
5443 15133 2.183679 CTCCTCCAAGGACTGCTACTT 58.816 52.381 0.00 0.00 40.06 2.24
5451 15141 4.705507 CCAAGGACTGCTACTTCTACTACA 59.294 45.833 0.00 0.00 0.00 2.74
5586 16576 7.370383 GCATGTCTTTTGGAGAAAAACTATGA 58.630 34.615 0.00 0.00 35.79 2.15
5606 16596 2.035421 CTTCTTGTGCTGCTGCCAA 58.965 52.632 13.47 14.47 38.71 4.52
5781 18243 6.754209 GTGAACCATGTTGTTTATTGTGAACA 59.246 34.615 0.00 0.00 35.36 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.636206 GCCGAATTCTACTCAAAACCTCAT 59.364 41.667 3.52 0.00 0.00 2.90
318 322 1.135575 GCAATGCCGAAGTCTCCAAAG 60.136 52.381 0.00 0.00 0.00 2.77
321 325 0.250684 TTGCAATGCCGAAGTCTCCA 60.251 50.000 1.53 0.00 0.00 3.86
361 365 1.137872 CAGCCCAGTTGAGGTAGCTAG 59.862 57.143 0.00 0.00 0.00 3.42
397 401 9.301897 TGCTATATATATACCTGGAGCTATGTG 57.698 37.037 0.00 0.00 0.00 3.21
426 430 4.060205 GCAATCAAAATGAAAGTGCAGGT 58.940 39.130 0.00 0.00 34.72 4.00
427 431 3.434299 GGCAATCAAAATGAAAGTGCAGG 59.566 43.478 12.85 0.00 35.64 4.85
428 432 4.059511 TGGCAATCAAAATGAAAGTGCAG 58.940 39.130 12.85 0.00 35.64 4.41
429 433 4.069300 TGGCAATCAAAATGAAAGTGCA 57.931 36.364 12.85 0.00 35.64 4.57
430 434 4.933400 AGATGGCAATCAAAATGAAAGTGC 59.067 37.500 3.34 5.82 35.03 4.40
431 435 5.929992 ACAGATGGCAATCAAAATGAAAGTG 59.070 36.000 3.34 0.00 35.03 3.16
432 436 6.105397 ACAGATGGCAATCAAAATGAAAGT 57.895 33.333 3.34 0.00 35.03 2.66
433 437 8.712285 ATAACAGATGGCAATCAAAATGAAAG 57.288 30.769 3.34 0.00 35.03 2.62
437 442 7.148390 TGCAAATAACAGATGGCAATCAAAATG 60.148 33.333 3.34 0.00 35.03 2.32
438 443 6.879993 TGCAAATAACAGATGGCAATCAAAAT 59.120 30.769 3.34 0.00 35.03 1.82
502 509 6.990798 TGAGCATATTCTGTCAGGAGATAAG 58.009 40.000 0.00 0.00 0.00 1.73
518 525 1.027357 CCTTGCCGCTTTGAGCATAT 58.973 50.000 0.50 0.00 42.58 1.78
534 541 1.002069 TCCCCACAGATTGATGCCTT 58.998 50.000 0.00 0.00 0.00 4.35
536 543 1.325355 CATCCCCACAGATTGATGCC 58.675 55.000 0.00 0.00 0.00 4.40
537 544 2.062971 ACATCCCCACAGATTGATGC 57.937 50.000 0.00 0.00 38.49 3.91
538 545 4.949238 TGTAAACATCCCCACAGATTGATG 59.051 41.667 0.00 0.00 40.28 3.07
539 546 5.191727 TGTAAACATCCCCACAGATTGAT 57.808 39.130 0.00 0.00 0.00 2.57
540 547 4.042809 ACTGTAAACATCCCCACAGATTGA 59.957 41.667 7.52 0.00 40.67 2.57
541 548 4.335416 ACTGTAAACATCCCCACAGATTG 58.665 43.478 7.52 0.00 40.67 2.67
542 549 4.657814 ACTGTAAACATCCCCACAGATT 57.342 40.909 7.52 0.00 40.67 2.40
543 550 4.657814 AACTGTAAACATCCCCACAGAT 57.342 40.909 7.52 0.00 40.67 2.90
544 551 4.394729 GAAACTGTAAACATCCCCACAGA 58.605 43.478 7.52 0.00 40.67 3.41
545 552 3.188460 CGAAACTGTAAACATCCCCACAG 59.812 47.826 0.00 0.00 43.21 3.66
546 553 3.142951 CGAAACTGTAAACATCCCCACA 58.857 45.455 0.00 0.00 0.00 4.17
547 554 2.486592 CCGAAACTGTAAACATCCCCAC 59.513 50.000 0.00 0.00 0.00 4.61
548 555 2.553466 CCCGAAACTGTAAACATCCCCA 60.553 50.000 0.00 0.00 0.00 4.96
549 556 2.089201 CCCGAAACTGTAAACATCCCC 58.911 52.381 0.00 0.00 0.00 4.81
550 557 3.062122 TCCCGAAACTGTAAACATCCC 57.938 47.619 0.00 0.00 0.00 3.85
551 558 5.425630 ACTATCCCGAAACTGTAAACATCC 58.574 41.667 0.00 0.00 0.00 3.51
552 559 7.263496 AGTACTATCCCGAAACTGTAAACATC 58.737 38.462 0.00 0.00 0.00 3.06
553 560 7.123847 AGAGTACTATCCCGAAACTGTAAACAT 59.876 37.037 0.00 0.00 0.00 2.71
554 561 6.435277 AGAGTACTATCCCGAAACTGTAAACA 59.565 38.462 0.00 0.00 0.00 2.83
555 562 6.861144 AGAGTACTATCCCGAAACTGTAAAC 58.139 40.000 0.00 0.00 0.00 2.01
556 563 7.472334 AAGAGTACTATCCCGAAACTGTAAA 57.528 36.000 0.00 0.00 0.00 2.01
557 564 8.049117 TCTAAGAGTACTATCCCGAAACTGTAA 58.951 37.037 0.00 0.00 0.00 2.41
558 565 7.568349 TCTAAGAGTACTATCCCGAAACTGTA 58.432 38.462 0.00 0.00 0.00 2.74
559 566 6.421485 TCTAAGAGTACTATCCCGAAACTGT 58.579 40.000 0.00 0.00 0.00 3.55
560 567 6.766944 TCTCTAAGAGTACTATCCCGAAACTG 59.233 42.308 0.00 0.00 0.00 3.16
561 568 6.897986 TCTCTAAGAGTACTATCCCGAAACT 58.102 40.000 0.00 0.00 0.00 2.66
562 569 7.586747 CATCTCTAAGAGTACTATCCCGAAAC 58.413 42.308 0.00 0.00 0.00 2.78
563 570 6.207025 GCATCTCTAAGAGTACTATCCCGAAA 59.793 42.308 0.00 0.00 0.00 3.46
564 571 5.706369 GCATCTCTAAGAGTACTATCCCGAA 59.294 44.000 0.00 0.00 0.00 4.30
565 572 5.013287 AGCATCTCTAAGAGTACTATCCCGA 59.987 44.000 0.00 0.00 0.00 5.14
566 573 5.250200 AGCATCTCTAAGAGTACTATCCCG 58.750 45.833 0.00 0.00 0.00 5.14
567 574 6.242396 TGAGCATCTCTAAGAGTACTATCCC 58.758 44.000 0.00 0.00 34.92 3.85
568 575 7.938140 ATGAGCATCTCTAAGAGTACTATCC 57.062 40.000 0.00 0.00 34.92 2.59
569 576 8.243426 CCAATGAGCATCTCTAAGAGTACTATC 58.757 40.741 0.00 0.00 34.92 2.08
570 577 7.309744 GCCAATGAGCATCTCTAAGAGTACTAT 60.310 40.741 0.00 0.00 34.92 2.12
571 578 6.015856 GCCAATGAGCATCTCTAAGAGTACTA 60.016 42.308 0.00 0.00 34.92 1.82
572 579 5.221422 GCCAATGAGCATCTCTAAGAGTACT 60.221 44.000 0.00 0.00 34.92 2.73
573 580 4.987912 GCCAATGAGCATCTCTAAGAGTAC 59.012 45.833 0.00 0.00 34.92 2.73
574 581 4.651045 TGCCAATGAGCATCTCTAAGAGTA 59.349 41.667 0.00 0.00 38.00 2.59
575 582 3.453717 TGCCAATGAGCATCTCTAAGAGT 59.546 43.478 0.00 0.00 38.00 3.24
576 583 4.069300 TGCCAATGAGCATCTCTAAGAG 57.931 45.455 0.00 0.00 38.00 2.85
577 584 4.492494 TTGCCAATGAGCATCTCTAAGA 57.508 40.909 0.00 0.00 43.64 2.10
578 585 5.356190 TCTTTTGCCAATGAGCATCTCTAAG 59.644 40.000 0.00 0.00 43.64 2.18
579 586 5.124457 GTCTTTTGCCAATGAGCATCTCTAA 59.876 40.000 0.00 0.00 43.64 2.10
580 587 4.637534 GTCTTTTGCCAATGAGCATCTCTA 59.362 41.667 0.00 0.00 43.64 2.43
581 588 3.442977 GTCTTTTGCCAATGAGCATCTCT 59.557 43.478 0.00 0.00 43.64 3.10
582 589 3.428589 GGTCTTTTGCCAATGAGCATCTC 60.429 47.826 9.78 0.00 43.64 2.75
583 590 2.494870 GGTCTTTTGCCAATGAGCATCT 59.505 45.455 9.78 0.00 43.64 2.90
584 591 2.733227 CGGTCTTTTGCCAATGAGCATC 60.733 50.000 13.61 0.00 43.64 3.91
585 592 1.203052 CGGTCTTTTGCCAATGAGCAT 59.797 47.619 13.61 0.00 43.64 3.79
586 593 0.597568 CGGTCTTTTGCCAATGAGCA 59.402 50.000 13.61 0.00 42.17 4.26
587 594 0.881118 TCGGTCTTTTGCCAATGAGC 59.119 50.000 5.76 5.76 33.35 4.26
588 595 1.879380 TGTCGGTCTTTTGCCAATGAG 59.121 47.619 0.00 0.00 0.00 2.90
589 596 1.879380 CTGTCGGTCTTTTGCCAATGA 59.121 47.619 0.00 0.00 0.00 2.57
590 597 1.879380 TCTGTCGGTCTTTTGCCAATG 59.121 47.619 0.00 0.00 0.00 2.82
591 598 1.880027 GTCTGTCGGTCTTTTGCCAAT 59.120 47.619 0.00 0.00 0.00 3.16
592 599 1.305201 GTCTGTCGGTCTTTTGCCAA 58.695 50.000 0.00 0.00 0.00 4.52
593 600 0.534203 GGTCTGTCGGTCTTTTGCCA 60.534 55.000 0.00 0.00 0.00 4.92
594 601 1.235281 GGGTCTGTCGGTCTTTTGCC 61.235 60.000 0.00 0.00 0.00 4.52
595 602 0.250338 AGGGTCTGTCGGTCTTTTGC 60.250 55.000 0.00 0.00 0.00 3.68
596 603 3.262420 CATAGGGTCTGTCGGTCTTTTG 58.738 50.000 0.00 0.00 0.00 2.44
597 604 2.904434 ACATAGGGTCTGTCGGTCTTTT 59.096 45.455 0.00 0.00 0.00 2.27
598 605 2.537143 ACATAGGGTCTGTCGGTCTTT 58.463 47.619 0.00 0.00 0.00 2.52
599 606 2.233305 ACATAGGGTCTGTCGGTCTT 57.767 50.000 0.00 0.00 0.00 3.01
600 607 2.233305 AACATAGGGTCTGTCGGTCT 57.767 50.000 0.00 0.00 0.00 3.85
601 608 2.232941 TCAAACATAGGGTCTGTCGGTC 59.767 50.000 0.00 0.00 0.00 4.79
602 609 2.233922 CTCAAACATAGGGTCTGTCGGT 59.766 50.000 0.00 0.00 0.00 4.69
603 610 2.496070 TCTCAAACATAGGGTCTGTCGG 59.504 50.000 0.00 0.00 0.00 4.79
604 611 3.868757 TCTCAAACATAGGGTCTGTCG 57.131 47.619 0.00 0.00 0.00 4.35
605 612 5.734720 TCATTCTCAAACATAGGGTCTGTC 58.265 41.667 0.00 0.00 0.00 3.51
606 613 5.762179 TCATTCTCAAACATAGGGTCTGT 57.238 39.130 0.00 0.00 0.00 3.41
607 614 6.176183 AGTTCATTCTCAAACATAGGGTCTG 58.824 40.000 0.00 0.00 0.00 3.51
608 615 6.013379 TGAGTTCATTCTCAAACATAGGGTCT 60.013 38.462 0.00 0.00 40.82 3.85
609 616 6.173339 TGAGTTCATTCTCAAACATAGGGTC 58.827 40.000 0.00 0.00 40.82 4.46
610 617 6.126863 TGAGTTCATTCTCAAACATAGGGT 57.873 37.500 0.00 0.00 40.82 4.34
620 627 3.084039 GGCCATGTTGAGTTCATTCTCA 58.916 45.455 0.00 0.00 41.85 3.27
621 628 3.084039 TGGCCATGTTGAGTTCATTCTC 58.916 45.455 0.00 0.00 35.28 2.87
622 629 3.159213 TGGCCATGTTGAGTTCATTCT 57.841 42.857 0.00 0.00 0.00 2.40
623 630 3.256631 AGTTGGCCATGTTGAGTTCATTC 59.743 43.478 6.09 0.00 0.00 2.67
624 631 3.233507 AGTTGGCCATGTTGAGTTCATT 58.766 40.909 6.09 0.00 0.00 2.57
625 632 2.880443 AGTTGGCCATGTTGAGTTCAT 58.120 42.857 6.09 0.00 0.00 2.57
626 633 2.363306 AGTTGGCCATGTTGAGTTCA 57.637 45.000 6.09 0.00 0.00 3.18
627 634 3.181476 ACAAAGTTGGCCATGTTGAGTTC 60.181 43.478 23.23 2.28 0.00 3.01
628 635 2.765699 ACAAAGTTGGCCATGTTGAGTT 59.234 40.909 23.23 9.12 0.00 3.01
629 636 2.101249 CACAAAGTTGGCCATGTTGAGT 59.899 45.455 23.23 12.75 0.00 3.41
630 637 2.746269 CACAAAGTTGGCCATGTTGAG 58.254 47.619 23.23 15.08 0.00 3.02
631 638 1.202510 GCACAAAGTTGGCCATGTTGA 60.203 47.619 23.23 0.32 0.00 3.18
632 639 1.219646 GCACAAAGTTGGCCATGTTG 58.780 50.000 6.09 13.92 0.00 3.33
633 640 0.829333 TGCACAAAGTTGGCCATGTT 59.171 45.000 6.09 0.00 0.00 2.71
634 641 0.390124 CTGCACAAAGTTGGCCATGT 59.610 50.000 6.09 4.72 0.00 3.21
635 642 0.675083 TCTGCACAAAGTTGGCCATG 59.325 50.000 6.09 3.89 0.00 3.66
636 643 0.963962 CTCTGCACAAAGTTGGCCAT 59.036 50.000 6.09 0.00 0.00 4.40
637 644 1.108727 CCTCTGCACAAAGTTGGCCA 61.109 55.000 0.00 0.00 0.00 5.36
638 645 0.823356 TCCTCTGCACAAAGTTGGCC 60.823 55.000 0.00 0.00 0.00 5.36
639 646 1.032014 TTCCTCTGCACAAAGTTGGC 58.968 50.000 0.00 0.00 0.00 4.52
640 647 2.301346 AGTTCCTCTGCACAAAGTTGG 58.699 47.619 0.00 0.00 0.00 3.77
641 648 4.154918 GGATAGTTCCTCTGCACAAAGTTG 59.845 45.833 0.00 0.00 39.14 3.16
642 649 4.202461 TGGATAGTTCCTCTGCACAAAGTT 60.202 41.667 0.00 0.00 43.07 2.66
643 650 3.327757 TGGATAGTTCCTCTGCACAAAGT 59.672 43.478 0.00 0.00 43.07 2.66
644 651 3.937706 CTGGATAGTTCCTCTGCACAAAG 59.062 47.826 0.00 0.00 43.07 2.77
645 652 3.582647 TCTGGATAGTTCCTCTGCACAAA 59.417 43.478 0.00 0.00 43.07 2.83
646 653 3.173151 TCTGGATAGTTCCTCTGCACAA 58.827 45.455 0.00 0.00 43.07 3.33
647 654 2.820178 TCTGGATAGTTCCTCTGCACA 58.180 47.619 0.00 0.00 43.07 4.57
648 655 5.303078 TCTTATCTGGATAGTTCCTCTGCAC 59.697 44.000 0.00 0.00 43.07 4.57
649 656 5.458595 TCTTATCTGGATAGTTCCTCTGCA 58.541 41.667 0.00 0.00 43.07 4.41
650 657 6.603940 ATCTTATCTGGATAGTTCCTCTGC 57.396 41.667 0.00 0.00 43.07 4.26
651 658 8.877864 AGTATCTTATCTGGATAGTTCCTCTG 57.122 38.462 0.00 0.00 43.07 3.35
652 659 9.969001 GTAGTATCTTATCTGGATAGTTCCTCT 57.031 37.037 0.00 0.00 43.07 3.69
653 660 9.969001 AGTAGTATCTTATCTGGATAGTTCCTC 57.031 37.037 0.00 0.00 43.07 3.71
654 661 9.969001 GAGTAGTATCTTATCTGGATAGTTCCT 57.031 37.037 0.00 0.00 43.07 3.36
655 662 9.181061 GGAGTAGTATCTTATCTGGATAGTTCC 57.819 40.741 0.00 0.00 42.94 3.62
656 663 9.181061 GGGAGTAGTATCTTATCTGGATAGTTC 57.819 40.741 0.00 0.00 33.18 3.01
657 664 8.907050 AGGGAGTAGTATCTTATCTGGATAGTT 58.093 37.037 0.00 0.00 33.18 2.24
658 665 8.471302 AGGGAGTAGTATCTTATCTGGATAGT 57.529 38.462 0.00 0.00 34.75 2.12
659 666 8.778059 AGAGGGAGTAGTATCTTATCTGGATAG 58.222 40.741 0.00 0.00 0.00 2.08
660 667 8.703142 AGAGGGAGTAGTATCTTATCTGGATA 57.297 38.462 0.00 0.00 0.00 2.59
661 668 7.597850 AGAGGGAGTAGTATCTTATCTGGAT 57.402 40.000 0.00 0.00 0.00 3.41
662 669 8.703142 ATAGAGGGAGTAGTATCTTATCTGGA 57.297 38.462 0.00 0.00 0.00 3.86
726 733 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
727 734 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
728 735 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
729 736 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
730 737 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
731 738 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
732 739 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
733 740 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
734 741 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
735 742 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
736 743 9.071276 TGTACTCCCTCCGTAAACTAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
737 744 8.995027 TGTACTCCCTCCGTAAACTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
739 746 9.765295 ATATGTACTCCCTCCGTAAACTAATAT 57.235 33.333 0.00 0.00 0.00 1.28
740 747 9.592196 AATATGTACTCCCTCCGTAAACTAATA 57.408 33.333 0.00 0.00 0.00 0.98
741 748 8.488308 AATATGTACTCCCTCCGTAAACTAAT 57.512 34.615 0.00 0.00 0.00 1.73
742 749 7.902920 AATATGTACTCCCTCCGTAAACTAA 57.097 36.000 0.00 0.00 0.00 2.24
743 750 9.592196 AATAATATGTACTCCCTCCGTAAACTA 57.408 33.333 0.00 0.00 0.00 2.24
744 751 8.365647 CAATAATATGTACTCCCTCCGTAAACT 58.634 37.037 0.00 0.00 0.00 2.66
745 752 8.362639 TCAATAATATGTACTCCCTCCGTAAAC 58.637 37.037 0.00 0.00 0.00 2.01
746 753 8.481492 TCAATAATATGTACTCCCTCCGTAAA 57.519 34.615 0.00 0.00 0.00 2.01
747 754 8.528643 CATCAATAATATGTACTCCCTCCGTAA 58.471 37.037 0.00 0.00 0.00 3.18
748 755 7.363530 GCATCAATAATATGTACTCCCTCCGTA 60.364 40.741 0.00 0.00 0.00 4.02
749 756 6.574465 GCATCAATAATATGTACTCCCTCCGT 60.574 42.308 0.00 0.00 0.00 4.69
750 757 5.812642 GCATCAATAATATGTACTCCCTCCG 59.187 44.000 0.00 0.00 0.00 4.63
751 758 6.595716 GTGCATCAATAATATGTACTCCCTCC 59.404 42.308 0.00 0.00 37.10 4.30
752 759 6.311445 CGTGCATCAATAATATGTACTCCCTC 59.689 42.308 0.00 0.00 37.68 4.30
753 760 6.166279 CGTGCATCAATAATATGTACTCCCT 58.834 40.000 0.00 0.00 37.68 4.20
754 761 5.932303 ACGTGCATCAATAATATGTACTCCC 59.068 40.000 0.00 0.00 37.68 4.30
755 762 6.868864 AGACGTGCATCAATAATATGTACTCC 59.131 38.462 0.00 0.00 37.68 3.85
756 763 7.062371 GGAGACGTGCATCAATAATATGTACTC 59.938 40.741 0.00 0.00 37.68 2.59
757 764 6.868864 GGAGACGTGCATCAATAATATGTACT 59.131 38.462 0.00 0.00 37.68 2.73
758 765 6.645003 TGGAGACGTGCATCAATAATATGTAC 59.355 38.462 0.00 0.00 36.82 2.90
759 766 6.754193 TGGAGACGTGCATCAATAATATGTA 58.246 36.000 0.00 0.00 0.00 2.29
760 767 5.610398 TGGAGACGTGCATCAATAATATGT 58.390 37.500 0.00 0.00 0.00 2.29
761 768 6.402875 CCATGGAGACGTGCATCAATAATATG 60.403 42.308 5.56 0.00 46.34 1.78
762 769 5.645067 CCATGGAGACGTGCATCAATAATAT 59.355 40.000 5.56 0.00 46.34 1.28
763 770 4.996758 CCATGGAGACGTGCATCAATAATA 59.003 41.667 5.56 0.00 46.34 0.98
764 771 3.817084 CCATGGAGACGTGCATCAATAAT 59.183 43.478 5.56 0.00 46.34 1.28
765 772 3.205338 CCATGGAGACGTGCATCAATAA 58.795 45.455 5.56 0.00 46.34 1.40
766 773 2.485302 CCCATGGAGACGTGCATCAATA 60.485 50.000 15.22 0.00 46.34 1.90
767 774 1.671979 CCATGGAGACGTGCATCAAT 58.328 50.000 5.56 0.00 46.34 2.57
768 775 0.392863 CCCATGGAGACGTGCATCAA 60.393 55.000 15.22 0.00 46.34 2.57
769 776 1.221566 CCCATGGAGACGTGCATCA 59.778 57.895 15.22 0.00 46.34 3.07
770 777 1.524621 CCCCATGGAGACGTGCATC 60.525 63.158 15.22 0.00 46.34 3.91
771 778 1.561769 TTCCCCATGGAGACGTGCAT 61.562 55.000 15.22 0.00 46.34 3.96
772 779 1.561769 ATTCCCCATGGAGACGTGCA 61.562 55.000 15.22 0.00 46.34 4.57
773 780 1.097547 CATTCCCCATGGAGACGTGC 61.098 60.000 15.22 0.00 46.34 5.34
775 782 1.224592 GCATTCCCCATGGAGACGT 59.775 57.895 15.22 0.00 43.07 4.34
776 783 0.394216 TTGCATTCCCCATGGAGACG 60.394 55.000 15.22 0.00 43.07 4.18
777 784 1.396653 CTTGCATTCCCCATGGAGAC 58.603 55.000 15.22 0.00 43.07 3.36
778 785 0.259647 CCTTGCATTCCCCATGGAGA 59.740 55.000 15.22 1.04 43.07 3.71
779 786 0.757935 CCCTTGCATTCCCCATGGAG 60.758 60.000 15.22 0.00 43.07 3.86
780 787 1.310715 CCCTTGCATTCCCCATGGA 59.689 57.895 15.22 0.00 39.54 3.41
781 788 2.437396 GCCCTTGCATTCCCCATGG 61.437 63.158 4.14 4.14 37.47 3.66
782 789 0.106066 TAGCCCTTGCATTCCCCATG 60.106 55.000 0.00 0.00 41.13 3.66
783 790 0.862554 ATAGCCCTTGCATTCCCCAT 59.137 50.000 0.00 0.00 41.13 4.00
784 791 1.528600 TATAGCCCTTGCATTCCCCA 58.471 50.000 0.00 0.00 41.13 4.96
785 792 2.621668 GGATATAGCCCTTGCATTCCCC 60.622 54.545 0.00 0.00 41.13 4.81
786 793 2.041620 TGGATATAGCCCTTGCATTCCC 59.958 50.000 4.18 0.00 41.13 3.97
787 794 3.439857 TGGATATAGCCCTTGCATTCC 57.560 47.619 4.18 0.00 41.13 3.01
788 795 3.192212 GCTTGGATATAGCCCTTGCATTC 59.808 47.826 4.18 0.00 41.13 2.67
789 796 3.160269 GCTTGGATATAGCCCTTGCATT 58.840 45.455 4.18 0.00 41.13 3.56
790 797 2.800250 GCTTGGATATAGCCCTTGCAT 58.200 47.619 4.18 0.00 41.13 3.96
791 798 2.276732 GCTTGGATATAGCCCTTGCA 57.723 50.000 4.18 0.00 41.13 4.08
798 805 4.144297 TCCAATGTTGGCTTGGATATAGC 58.856 43.478 6.91 0.00 45.56 2.97
1073 1087 2.204090 GGGAGGACAGGGGGAACA 60.204 66.667 0.00 0.00 0.00 3.18
1083 1100 3.169242 GGGGAATCGGGGGAGGAC 61.169 72.222 0.00 0.00 0.00 3.85
1189 1243 2.024305 CGTCGGCGAGCTACGAAT 59.976 61.111 11.20 0.00 45.77 3.34
1506 1562 2.571212 TGCATTGCCCTAATTCCTACG 58.429 47.619 6.12 0.00 0.00 3.51
1522 1578 4.599041 TGAGCTACAAACCCTAATTGCAT 58.401 39.130 0.00 0.00 0.00 3.96
1718 1801 5.606348 AAACCCTATTGTTTCACAGCAAA 57.394 34.783 0.00 0.00 33.24 3.68
1719 1802 5.606348 AAAACCCTATTGTTTCACAGCAA 57.394 34.783 0.00 0.00 37.46 3.91
1720 1803 6.716934 TTAAAACCCTATTGTTTCACAGCA 57.283 33.333 0.00 0.00 37.46 4.41
1721 1804 7.655732 ACAATTAAAACCCTATTGTTTCACAGC 59.344 33.333 0.00 0.00 38.89 4.40
1722 1805 9.541143 AACAATTAAAACCCTATTGTTTCACAG 57.459 29.630 0.00 0.00 45.30 3.66
1766 1849 8.902806 CCCAATTATTTCACAGCTAATTCAGTA 58.097 33.333 0.00 0.00 0.00 2.74
1767 1850 7.397192 ACCCAATTATTTCACAGCTAATTCAGT 59.603 33.333 0.00 0.00 0.00 3.41
1768 1851 7.775120 ACCCAATTATTTCACAGCTAATTCAG 58.225 34.615 0.00 0.00 0.00 3.02
1769 1852 7.716799 ACCCAATTATTTCACAGCTAATTCA 57.283 32.000 0.00 0.00 0.00 2.57
1770 1853 9.435688 AAAACCCAATTATTTCACAGCTAATTC 57.564 29.630 0.00 0.00 0.00 2.17
1775 1858 9.218440 CAATTAAAACCCAATTATTTCACAGCT 57.782 29.630 0.00 0.00 0.00 4.24
1776 1859 8.998377 ACAATTAAAACCCAATTATTTCACAGC 58.002 29.630 0.00 0.00 0.00 4.40
2520 2697 7.418337 TCTAATACTTTGATACCTGCTGTGA 57.582 36.000 0.00 0.00 0.00 3.58
2600 2780 2.909662 CCTCTTCCTCCTTGTCCTCTTT 59.090 50.000 0.00 0.00 0.00 2.52
2647 2830 6.101650 TCTAGCTCATCTTCTTGTTGTTCA 57.898 37.500 0.00 0.00 0.00 3.18
2656 2854 4.167892 TCCTCTTCCTCTAGCTCATCTTCT 59.832 45.833 0.00 0.00 0.00 2.85
2946 3165 1.813513 ATGCACCACTACTTCAGCAC 58.186 50.000 0.00 0.00 34.54 4.40
2949 3168 2.744202 GGACAATGCACCACTACTTCAG 59.256 50.000 0.00 0.00 0.00 3.02
2950 3169 2.552155 GGGACAATGCACCACTACTTCA 60.552 50.000 0.00 0.00 0.00 3.02
3282 3501 2.181975 CAGGAACCTTGCAATTCCCAT 58.818 47.619 22.57 7.69 44.78 4.00
3285 3504 1.260544 AGCAGGAACCTTGCAATTCC 58.739 50.000 19.87 19.87 44.14 3.01
3339 3558 1.915266 CCTGCTCTGGGGTCAGTCA 60.915 63.158 0.00 0.00 41.59 3.41
3489 3708 4.379186 CCAAAACAGCTTGCAGATAGTCTG 60.379 45.833 2.65 2.65 46.90 3.51
3530 3749 2.684881 CCCTAGTTGTCACAATGCATCC 59.315 50.000 0.00 0.00 0.00 3.51
3676 3899 9.035607 CATAGCAATAGTGTGTAGGTAAAAGAG 57.964 37.037 0.00 0.00 0.00 2.85
3998 4259 8.208903 ACTAAGTTGTACAACAAGAACTATGGT 58.791 33.333 33.93 16.67 43.47 3.55
3999 4260 8.603242 ACTAAGTTGTACAACAAGAACTATGG 57.397 34.615 33.93 16.18 43.47 2.74
4005 4266 9.767228 TGCTATAACTAAGTTGTACAACAAGAA 57.233 29.630 33.93 23.22 43.47 2.52
4006 4267 9.767228 TTGCTATAACTAAGTTGTACAACAAGA 57.233 29.630 33.93 20.03 43.47 3.02
4009 4270 9.550406 AGTTTGCTATAACTAAGTTGTACAACA 57.450 29.630 33.93 17.77 38.82 3.33
4465 9351 2.680312 TTGTCCATCTAGCACTCTGC 57.320 50.000 0.00 0.00 45.46 4.26
4693 9579 1.891150 ACAAAATCTTCAGGCTGCTGG 59.109 47.619 10.34 2.23 0.00 4.85
4965 9852 1.089920 CTGGCTTCAAAGGATCACCG 58.910 55.000 0.00 0.00 41.83 4.94
5059 9955 6.892658 AAGGTGTGCATTAGTTGTTCATTA 57.107 33.333 0.00 0.00 0.00 1.90
5110 10006 1.794714 TCTGTAGGGGCAGATCTTCC 58.205 55.000 2.27 2.27 40.23 3.46
5146 10042 3.480470 CAACTCTTCCACCAGATGTTGT 58.520 45.455 0.00 0.00 32.70 3.32
5438 15128 6.039270 AGCAGATTGAGCTGTAGTAGAAGTAG 59.961 42.308 0.00 0.00 41.61 2.57
5439 15129 5.888724 AGCAGATTGAGCTGTAGTAGAAGTA 59.111 40.000 0.00 0.00 41.61 2.24
5440 15130 4.709397 AGCAGATTGAGCTGTAGTAGAAGT 59.291 41.667 0.00 0.00 41.61 3.01
5441 15131 5.261209 AGCAGATTGAGCTGTAGTAGAAG 57.739 43.478 0.00 0.00 41.61 2.85
5442 15132 5.667539 AAGCAGATTGAGCTGTAGTAGAA 57.332 39.130 0.00 0.00 42.53 2.10
5443 15133 6.239148 CCATAAGCAGATTGAGCTGTAGTAGA 60.239 42.308 0.00 0.00 42.53 2.59
5451 15141 3.434739 CCCTTCCATAAGCAGATTGAGCT 60.435 47.826 0.00 0.00 45.97 4.09
5586 16576 2.266627 GGCAGCAGCACAAGAAGCT 61.267 57.895 2.65 0.00 44.61 3.74
5606 16596 8.190784 CACATAGTTTTCTCCAAAAGACAAGTT 58.809 33.333 0.00 0.00 31.35 2.66
5781 18243 6.433716 TGAACAACACCATAACATGACATCAT 59.566 34.615 0.00 0.00 36.96 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.