Multiple sequence alignment - TraesCS3B01G043400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G043400 chr3B 100.000 5007 0 0 1 5007 22206886 22211892 0.000000e+00 9247
1 TraesCS3B01G043400 chr3B 91.945 1018 72 4 3140 4154 22438131 22439141 0.000000e+00 1417
2 TraesCS3B01G043400 chr3B 82.803 1256 140 42 326 1570 22369710 22370900 0.000000e+00 1053
3 TraesCS3B01G043400 chr3B 89.024 820 79 6 3425 4241 22383874 22384685 0.000000e+00 1005
4 TraesCS3B01G043400 chr3B 90.169 651 58 5 2795 3444 22380600 22381245 0.000000e+00 843
5 TraesCS3B01G043400 chr3B 91.364 579 47 3 2229 2805 22371296 22371873 0.000000e+00 789
6 TraesCS3B01G043400 chr3B 86.446 664 76 9 1581 2232 22370767 22371428 0.000000e+00 715
7 TraesCS3B01G043400 chr3B 96.596 235 6 1 4381 4613 22218522 22218288 6.080000e-104 388
8 TraesCS3B01G043400 chr3B 85.915 213 21 3 104 313 22369464 22369670 8.440000e-53 219
9 TraesCS3B01G043400 chr3B 93.893 131 8 0 2231 2361 22208987 22209117 1.100000e-46 198
10 TraesCS3B01G043400 chr3B 93.893 131 8 0 2102 2232 22209116 22209246 1.100000e-46 198
11 TraesCS3B01G043400 chr6B 86.074 2025 239 22 2229 4241 537303225 537305218 0.000000e+00 2137
12 TraesCS3B01G043400 chr6B 85.827 2025 244 22 2229 4241 453264035 453266028 0.000000e+00 2109
13 TraesCS3B01G043400 chr6B 82.210 2018 321 19 2232 4241 453156970 453158957 0.000000e+00 1703
14 TraesCS3B01G043400 chr6B 87.045 741 92 4 1494 2232 453263429 453264167 0.000000e+00 833
15 TraesCS3B01G043400 chr6B 87.295 732 90 3 1503 2232 537302627 537303357 0.000000e+00 833
16 TraesCS3B01G043400 chr6B 82.088 977 164 7 2229 3199 453278267 453279238 0.000000e+00 824
17 TraesCS3B01G043400 chr6B 76.324 1681 296 75 60 1706 453276330 453277942 0.000000e+00 806
18 TraesCS3B01G043400 chr6B 76.677 1595 283 66 141 1706 537315543 537317077 0.000000e+00 802
19 TraesCS3B01G043400 chr6B 79.594 1132 210 19 3116 4241 11609716 11608600 0.000000e+00 791
20 TraesCS3B01G043400 chr6B 84.869 727 102 6 1503 2223 453277666 453278390 0.000000e+00 726
21 TraesCS3B01G043400 chr6B 84.774 729 101 7 1503 2223 537316801 537317527 0.000000e+00 723
22 TraesCS3B01G043400 chr6B 84.746 413 57 4 2229 2638 537317404 537317813 4.670000e-110 409
23 TraesCS3B01G043400 chr6B 78.329 383 72 9 819 1195 453117736 453118113 2.330000e-58 237
24 TraesCS3B01G043400 chr6D 83.540 2017 285 25 2232 4241 291784600 291786576 0.000000e+00 1842
25 TraesCS3B01G043400 chr6D 83.391 2017 285 30 2232 4240 291795710 291797684 0.000000e+00 1823
26 TraesCS3B01G043400 chr6D 76.636 1635 272 69 166 1768 291793747 291795303 0.000000e+00 802
27 TraesCS3B01G043400 chr6D 80.289 761 129 15 816 1570 291783537 291784282 5.660000e-154 555
28 TraesCS3B01G043400 chr6D 81.185 287 39 9 236 513 291782954 291783234 3.040000e-52 217
29 TraesCS3B01G043400 chr6D 94.118 102 5 1 4236 4336 170688662 170688763 2.410000e-33 154
30 TraesCS3B01G043400 chr3A 89.984 1218 112 5 2229 3444 21011934 21010725 0.000000e+00 1565
31 TraesCS3B01G043400 chr3A 86.260 655 82 8 1581 2232 21012452 21011803 0.000000e+00 704
32 TraesCS3B01G043400 chr3A 86.167 600 75 2 1026 1624 21012857 21012265 4.230000e-180 641
33 TraesCS3B01G043400 chr3A 92.169 166 13 0 4076 4241 21009349 21009184 8.380000e-58 235
34 TraesCS3B01G043400 chr3A 82.716 243 21 9 6 234 21155990 21155755 3.950000e-46 196
35 TraesCS3B01G043400 chr3A 95.161 62 3 0 4322 4383 21009186 21009125 1.150000e-16 99
36 TraesCS3B01G043400 chr4D 96.326 626 21 2 4382 5007 340760282 340759659 0.000000e+00 1027
37 TraesCS3B01G043400 chr3D 95.847 626 20 3 4382 5007 179453799 179453180 0.000000e+00 1007
38 TraesCS3B01G043400 chr3D 96.983 232 6 1 4382 4613 179446688 179446918 6.080000e-104 388
39 TraesCS3B01G043400 chr3D 93.137 102 6 1 4236 4336 325274190 325274089 1.120000e-31 148
40 TraesCS3B01G043400 chr4B 95.404 631 22 4 4382 5007 522488930 522489558 0.000000e+00 998
41 TraesCS3B01G043400 chr4B 96.186 236 7 2 4380 4613 522496278 522496043 7.860000e-103 385
42 TraesCS3B01G043400 chr2D 93.120 625 37 5 4386 5007 87998733 87998112 0.000000e+00 911
43 TraesCS3B01G043400 chr2D 92.698 630 28 10 4382 5007 15009651 15009036 0.000000e+00 893
44 TraesCS3B01G043400 chr2D 92.222 630 22 13 4382 4985 18280472 18279844 0.000000e+00 867
45 TraesCS3B01G043400 chr2D 88.000 125 12 3 4236 4359 492391972 492392094 1.450000e-30 145
46 TraesCS3B01G043400 chr1A 91.473 645 41 10 4372 5007 307689620 307690259 0.000000e+00 874
47 TraesCS3B01G043400 chr1A 95.876 97 4 0 4231 4327 373317575 373317671 1.870000e-34 158
48 TraesCS3B01G043400 chr2A 91.374 626 51 2 4382 5007 158248080 158248702 0.000000e+00 854
49 TraesCS3B01G043400 chr2A 94.175 103 5 1 4234 4336 708034589 708034488 6.710000e-34 156
50 TraesCS3B01G043400 chr6A 78.452 1253 228 30 965 2196 431223949 431222718 0.000000e+00 780
51 TraesCS3B01G043400 chr6A 74.718 1685 394 22 2232 3904 431222811 431221147 0.000000e+00 723
52 TraesCS3B01G043400 chr1D 94.297 491 21 4 4517 5007 447269421 447268938 0.000000e+00 745
53 TraesCS3B01G043400 chr5D 82.243 642 108 4 3172 3810 539706204 539705566 2.630000e-152 549
54 TraesCS3B01G043400 chr5D 95.000 100 3 2 4230 4329 495161381 495161478 6.710000e-34 156
55 TraesCS3B01G043400 chrUn 89.448 417 44 0 3115 3531 477001754 477002170 1.230000e-145 527
56 TraesCS3B01G043400 chr7D 77.301 489 98 8 998 1478 2899251 2898768 4.940000e-70 276
57 TraesCS3B01G043400 chr1B 97.872 94 1 1 4236 4328 371456427 371456334 1.440000e-35 161
58 TraesCS3B01G043400 chr5A 91.071 112 6 4 4230 4338 533964314 533964204 1.120000e-31 148
59 TraesCS3B01G043400 chr5B 92.381 105 4 4 4228 4330 146805800 146805698 4.040000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G043400 chr3B 22206886 22211892 5006 False 3214.333333 9247 95.928667 1 5007 3 chr3B.!!$F2 5006
1 TraesCS3B01G043400 chr3B 22438131 22439141 1010 False 1417.000000 1417 91.945000 3140 4154 1 chr3B.!!$F1 1014
2 TraesCS3B01G043400 chr3B 22380600 22384685 4085 False 924.000000 1005 89.596500 2795 4241 2 chr3B.!!$F4 1446
3 TraesCS3B01G043400 chr3B 22369464 22371873 2409 False 694.000000 1053 86.632000 104 2805 4 chr3B.!!$F3 2701
4 TraesCS3B01G043400 chr6B 453156970 453158957 1987 False 1703.000000 1703 82.210000 2232 4241 1 chr6B.!!$F2 2009
5 TraesCS3B01G043400 chr6B 537302627 537305218 2591 False 1485.000000 2137 86.684500 1503 4241 2 chr6B.!!$F5 2738
6 TraesCS3B01G043400 chr6B 453263429 453266028 2599 False 1471.000000 2109 86.436000 1494 4241 2 chr6B.!!$F3 2747
7 TraesCS3B01G043400 chr6B 11608600 11609716 1116 True 791.000000 791 79.594000 3116 4241 1 chr6B.!!$R1 1125
8 TraesCS3B01G043400 chr6B 453276330 453279238 2908 False 785.333333 824 81.093667 60 3199 3 chr6B.!!$F4 3139
9 TraesCS3B01G043400 chr6B 537315543 537317813 2270 False 644.666667 802 82.065667 141 2638 3 chr6B.!!$F6 2497
10 TraesCS3B01G043400 chr6D 291793747 291797684 3937 False 1312.500000 1823 80.013500 166 4240 2 chr6D.!!$F3 4074
11 TraesCS3B01G043400 chr6D 291782954 291786576 3622 False 871.333333 1842 81.671333 236 4241 3 chr6D.!!$F2 4005
12 TraesCS3B01G043400 chr3A 21009125 21012857 3732 True 648.800000 1565 89.948200 1026 4383 5 chr3A.!!$R2 3357
13 TraesCS3B01G043400 chr4D 340759659 340760282 623 True 1027.000000 1027 96.326000 4382 5007 1 chr4D.!!$R1 625
14 TraesCS3B01G043400 chr3D 179453180 179453799 619 True 1007.000000 1007 95.847000 4382 5007 1 chr3D.!!$R1 625
15 TraesCS3B01G043400 chr4B 522488930 522489558 628 False 998.000000 998 95.404000 4382 5007 1 chr4B.!!$F1 625
16 TraesCS3B01G043400 chr2D 87998112 87998733 621 True 911.000000 911 93.120000 4386 5007 1 chr2D.!!$R3 621
17 TraesCS3B01G043400 chr2D 15009036 15009651 615 True 893.000000 893 92.698000 4382 5007 1 chr2D.!!$R1 625
18 TraesCS3B01G043400 chr2D 18279844 18280472 628 True 867.000000 867 92.222000 4382 4985 1 chr2D.!!$R2 603
19 TraesCS3B01G043400 chr1A 307689620 307690259 639 False 874.000000 874 91.473000 4372 5007 1 chr1A.!!$F1 635
20 TraesCS3B01G043400 chr2A 158248080 158248702 622 False 854.000000 854 91.374000 4382 5007 1 chr2A.!!$F1 625
21 TraesCS3B01G043400 chr6A 431221147 431223949 2802 True 751.500000 780 76.585000 965 3904 2 chr6A.!!$R1 2939
22 TraesCS3B01G043400 chr5D 539705566 539706204 638 True 549.000000 549 82.243000 3172 3810 1 chr5D.!!$R1 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
619 716 0.106918 ACACAACACCACCCGACAAT 60.107 50.0 0.00 0.00 0.00 2.71 F
1053 1196 0.030638 ATGAAGTTGGCAACGCACAC 59.969 50.0 24.12 15.68 42.51 3.82 F
1536 1756 0.108615 TCTCTGCAAACTCGCTAGCC 60.109 55.0 9.66 0.00 0.00 3.93 F
2209 2740 0.191064 AGGGACAACAGAGACTGGGA 59.809 55.0 0.00 0.00 35.51 4.37 F
2642 3184 0.322975 CGGCCTAATCCCATCCTCTG 59.677 60.0 0.00 0.00 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2190 2721 0.191064 TCCCAGTCTCTGTTGTCCCT 59.809 55.000 0.00 0.0 0.00 4.20 R
2191 2722 0.610687 CTCCCAGTCTCTGTTGTCCC 59.389 60.000 0.00 0.0 0.00 4.46 R
2413 2953 1.064685 GGTTACCAATGGACTGGGGAG 60.065 57.143 6.16 0.0 41.16 4.30 R
3883 8434 0.250684 TTGCAATGCCGAAGTCTCCA 60.251 50.000 1.53 0.0 0.00 3.86 R
4330 8883 0.392863 CCCATGGAGACGTGCATCAA 60.393 55.000 15.22 0.0 46.34 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.858476 ACTGGGCCATGTCCACCA 60.858 61.111 6.72 0.00 32.12 4.17
18 19 2.240918 ACTGGGCCATGTCCACCAT 61.241 57.895 6.72 0.00 32.12 3.55
19 20 1.454479 CTGGGCCATGTCCACCATC 60.454 63.158 6.72 0.00 32.12 3.51
20 21 2.214122 CTGGGCCATGTCCACCATCA 62.214 60.000 6.72 0.00 32.12 3.07
21 22 1.454479 GGGCCATGTCCACCATCAG 60.454 63.158 4.39 0.00 0.00 2.90
22 23 1.304282 GGCCATGTCCACCATCAGT 59.696 57.895 0.00 0.00 0.00 3.41
23 24 1.033746 GGCCATGTCCACCATCAGTG 61.034 60.000 0.00 0.00 46.83 3.66
24 25 0.322816 GCCATGTCCACCATCAGTGT 60.323 55.000 0.00 0.00 45.74 3.55
25 26 1.065491 GCCATGTCCACCATCAGTGTA 60.065 52.381 0.00 0.00 45.74 2.90
26 27 2.617788 GCCATGTCCACCATCAGTGTAA 60.618 50.000 0.00 0.00 45.74 2.41
27 28 3.684908 CCATGTCCACCATCAGTGTAAA 58.315 45.455 0.00 0.00 45.74 2.01
28 29 3.440173 CCATGTCCACCATCAGTGTAAAC 59.560 47.826 0.00 0.00 45.74 2.01
29 30 4.326826 CATGTCCACCATCAGTGTAAACT 58.673 43.478 0.00 0.00 45.74 2.66
30 31 4.431416 TGTCCACCATCAGTGTAAACTT 57.569 40.909 0.00 0.00 45.74 2.66
31 32 4.133820 TGTCCACCATCAGTGTAAACTTG 58.866 43.478 0.00 0.00 45.74 3.16
32 33 3.502211 GTCCACCATCAGTGTAAACTTGG 59.498 47.826 2.62 2.62 45.74 3.61
33 34 3.137544 TCCACCATCAGTGTAAACTTGGT 59.862 43.478 3.84 3.84 45.74 3.67
34 35 4.488126 CACCATCAGTGTAAACTTGGTG 57.512 45.455 18.43 18.43 45.59 4.17
35 36 3.882888 CACCATCAGTGTAAACTTGGTGT 59.117 43.478 21.81 0.31 45.69 4.16
36 37 5.060506 CACCATCAGTGTAAACTTGGTGTA 58.939 41.667 21.81 0.00 45.69 2.90
37 38 5.529430 CACCATCAGTGTAAACTTGGTGTAA 59.471 40.000 21.81 0.00 45.69 2.41
38 39 5.763204 ACCATCAGTGTAAACTTGGTGTAAG 59.237 40.000 8.40 0.00 42.30 2.34
39 40 8.595196 CACCATCAGTGTAAACTTGGTGTAAGT 61.595 40.741 21.81 1.53 45.69 2.24
50 51 5.212589 CTTGGTGTAAGTTACGGCATTAC 57.787 43.478 8.47 0.14 0.00 1.89
51 52 3.252400 TGGTGTAAGTTACGGCATTACG 58.748 45.455 8.47 0.00 40.31 3.18
52 53 2.604462 GGTGTAAGTTACGGCATTACGG 59.396 50.000 8.47 0.00 38.39 4.02
53 54 3.253230 GTGTAAGTTACGGCATTACGGT 58.747 45.455 8.47 0.00 38.39 4.83
54 55 3.304293 GTGTAAGTTACGGCATTACGGTC 59.696 47.826 8.47 0.00 38.39 4.79
55 56 1.632422 AAGTTACGGCATTACGGTCG 58.368 50.000 0.00 0.00 42.61 4.79
56 57 0.803380 AGTTACGGCATTACGGTCGC 60.803 55.000 0.00 0.00 40.07 5.19
57 58 1.519013 TTACGGCATTACGGTCGCC 60.519 57.895 6.17 6.17 40.07 5.54
92 93 1.270412 ACACGATTTACTTGACCCGCA 60.270 47.619 0.00 0.00 0.00 5.69
94 95 2.224549 CACGATTTACTTGACCCGCAAA 59.775 45.455 0.00 0.00 35.74 3.68
97 98 3.486875 CGATTTACTTGACCCGCAAATCC 60.487 47.826 0.00 0.00 35.74 3.01
101 102 1.271871 ACTTGACCCGCAAATCCATCA 60.272 47.619 0.00 0.00 35.74 3.07
112 113 4.749099 CGCAAATCCATCAAAAGAAAACCA 59.251 37.500 0.00 0.00 0.00 3.67
117 118 8.553696 CAAATCCATCAAAAGAAAACCAAGAAG 58.446 33.333 0.00 0.00 0.00 2.85
130 131 2.701951 ACCAAGAAGGAACCACTTACGA 59.298 45.455 0.00 0.00 41.22 3.43
138 139 5.422214 AGGAACCACTTACGATCTGAAAT 57.578 39.130 0.00 0.00 0.00 2.17
139 140 5.178797 AGGAACCACTTACGATCTGAAATG 58.821 41.667 0.00 0.00 0.00 2.32
190 196 9.936759 TTTTTCTTCTGACAAAATAACCAAACT 57.063 25.926 0.00 0.00 0.00 2.66
191 197 9.936759 TTTTCTTCTGACAAAATAACCAAACTT 57.063 25.926 0.00 0.00 0.00 2.66
192 198 8.925161 TTCTTCTGACAAAATAACCAAACTTG 57.075 30.769 0.00 0.00 0.00 3.16
193 199 8.062065 TCTTCTGACAAAATAACCAAACTTGT 57.938 30.769 0.00 0.00 33.07 3.16
194 200 9.179909 TCTTCTGACAAAATAACCAAACTTGTA 57.820 29.630 0.00 0.00 30.62 2.41
245 251 6.095300 CCAGTAAACCATTTCACATGCTGATA 59.905 38.462 0.00 0.00 0.00 2.15
250 256 5.353938 ACCATTTCACATGCTGATATTTGC 58.646 37.500 0.00 0.00 0.00 3.68
277 283 1.732732 CGAAACCGCTCGAGAGATGTT 60.733 52.381 18.75 10.72 41.44 2.71
297 303 1.465777 TGCACATCAACGCAGAAGATG 59.534 47.619 0.00 0.00 43.63 2.90
310 316 2.530701 AGAAGATGTCTGTCCGGTTCT 58.469 47.619 0.00 0.00 34.29 3.01
313 319 0.741221 GATGTCTGTCCGGTTCTGGC 60.741 60.000 0.00 2.67 0.00 4.85
314 320 1.194781 ATGTCTGTCCGGTTCTGGCT 61.195 55.000 0.00 0.00 0.00 4.75
316 322 2.046892 CTGTCCGGTTCTGGCTGG 60.047 66.667 0.00 0.00 36.25 4.85
320 326 2.144078 TCCGGTTCTGGCTGGACAA 61.144 57.895 0.00 0.00 38.89 3.18
324 356 0.251341 GGTTCTGGCTGGACAATGGT 60.251 55.000 5.11 0.00 0.00 3.55
358 391 2.514824 GGGATTCGAGGCTGCACC 60.515 66.667 0.50 0.00 39.61 5.01
359 392 2.268920 GGATTCGAGGCTGCACCA 59.731 61.111 0.50 0.00 43.14 4.17
409 444 1.852067 GCGACAACAAAGATGGGCGT 61.852 55.000 0.00 0.00 0.00 5.68
410 445 0.591170 CGACAACAAAGATGGGCGTT 59.409 50.000 0.00 0.00 0.00 4.84
411 447 1.662876 CGACAACAAAGATGGGCGTTG 60.663 52.381 0.00 0.00 43.40 4.10
414 450 1.666888 CAACAAAGATGGGCGTTGAGC 60.667 52.381 0.00 0.00 40.92 4.26
438 474 4.216687 TGTGAAAAATAGCGGTTTACTGGG 59.783 41.667 0.00 0.00 0.00 4.45
485 522 3.405592 TAGCCGCGGTCAAGCTACG 62.406 63.158 28.70 0.00 38.06 3.51
486 523 4.789075 GCCGCGGTCAAGCTACGA 62.789 66.667 28.70 0.00 34.40 3.43
487 524 2.879462 CCGCGGTCAAGCTACGAC 60.879 66.667 19.50 7.52 34.40 4.34
496 533 1.066605 TCAAGCTACGACGATAAGGCC 59.933 52.381 0.00 0.00 0.00 5.19
557 643 4.384547 GGCCGCTGTAAATGTGTTTTTAAG 59.615 41.667 0.00 0.00 0.00 1.85
604 698 0.179076 CAGTCCACAGCTCACACACA 60.179 55.000 0.00 0.00 0.00 3.72
607 701 0.251634 TCCACAGCTCACACACAACA 59.748 50.000 0.00 0.00 0.00 3.33
608 702 0.378257 CCACAGCTCACACACAACAC 59.622 55.000 0.00 0.00 0.00 3.32
615 712 1.450491 CACACACAACACCACCCGA 60.450 57.895 0.00 0.00 0.00 5.14
619 716 0.106918 ACACAACACCACCCGACAAT 60.107 50.000 0.00 0.00 0.00 2.71
634 731 2.157668 CGACAATACCAAGCAGACACAC 59.842 50.000 0.00 0.00 0.00 3.82
658 761 3.452786 CGCCTTCTGCTCTCCGGA 61.453 66.667 2.93 2.93 38.05 5.14
695 799 9.477484 GCGTTTTCTATCTCCTTAATTATCTCA 57.523 33.333 0.00 0.00 0.00 3.27
720 837 8.745837 CAATTTATTTGTGTTGTGAGACTTGTC 58.254 33.333 0.00 0.00 0.00 3.18
721 838 7.624360 TTTATTTGTGTTGTGAGACTTGTCT 57.376 32.000 2.59 2.59 0.00 3.41
724 841 4.471904 TGTGTTGTGAGACTTGTCTCTT 57.528 40.909 25.21 0.00 37.62 2.85
725 842 4.183865 TGTGTTGTGAGACTTGTCTCTTG 58.816 43.478 25.21 0.00 37.62 3.02
726 843 4.184629 GTGTTGTGAGACTTGTCTCTTGT 58.815 43.478 25.21 0.00 37.62 3.16
727 844 4.033358 GTGTTGTGAGACTTGTCTCTTGTG 59.967 45.833 25.21 0.00 37.62 3.33
728 845 3.459232 TGTGAGACTTGTCTCTTGTGG 57.541 47.619 25.21 0.00 37.62 4.17
729 846 2.139118 GTGAGACTTGTCTCTTGTGGC 58.861 52.381 25.21 9.77 37.62 5.01
731 848 2.435805 TGAGACTTGTCTCTTGTGGCTT 59.564 45.455 25.21 0.00 37.62 4.35
732 849 3.641436 TGAGACTTGTCTCTTGTGGCTTA 59.359 43.478 25.21 5.29 37.62 3.09
733 850 4.100963 TGAGACTTGTCTCTTGTGGCTTAA 59.899 41.667 25.21 4.68 37.62 1.85
734 851 5.221722 TGAGACTTGTCTCTTGTGGCTTAAT 60.222 40.000 25.21 0.00 37.62 1.40
735 852 5.625150 AGACTTGTCTCTTGTGGCTTAATT 58.375 37.500 0.00 0.00 0.00 1.40
736 853 6.769512 AGACTTGTCTCTTGTGGCTTAATTA 58.230 36.000 0.00 0.00 0.00 1.40
737 854 6.876257 AGACTTGTCTCTTGTGGCTTAATTAG 59.124 38.462 0.00 0.00 0.00 1.73
738 855 5.940470 ACTTGTCTCTTGTGGCTTAATTAGG 59.060 40.000 0.00 0.00 0.00 2.69
750 867 5.789710 GCTTAATTAGGCACGTAAAGTCA 57.210 39.130 14.21 0.00 0.00 3.41
751 868 5.557388 GCTTAATTAGGCACGTAAAGTCAC 58.443 41.667 14.21 0.00 0.00 3.67
752 869 5.121142 GCTTAATTAGGCACGTAAAGTCACA 59.879 40.000 14.21 0.00 0.00 3.58
753 870 6.470557 TTAATTAGGCACGTAAAGTCACAC 57.529 37.500 0.00 0.00 0.00 3.82
754 871 2.054687 TAGGCACGTAAAGTCACACG 57.945 50.000 0.00 0.00 43.63 4.49
771 893 3.911964 CACACGTAACCATTTGCTAAAGC 59.088 43.478 0.00 0.00 42.50 3.51
774 896 5.646360 ACACGTAACCATTTGCTAAAGCTAT 59.354 36.000 3.26 0.00 42.66 2.97
795 920 9.135189 AGCTATTCCATTATGCTTCAAATAACA 57.865 29.630 0.00 0.00 0.00 2.41
796 921 9.748708 GCTATTCCATTATGCTTCAAATAACAA 57.251 29.630 0.00 0.00 0.00 2.83
806 931 5.009210 TGCTTCAAATAACAAACCGCTAGTT 59.991 36.000 0.00 0.00 41.81 2.24
814 939 2.031157 ACAAACCGCTAGTTGTCAATGC 60.031 45.455 0.00 0.00 39.19 3.56
815 940 1.890876 AACCGCTAGTTGTCAATGCA 58.109 45.000 0.00 0.00 37.29 3.96
816 941 2.113860 ACCGCTAGTTGTCAATGCAT 57.886 45.000 0.00 0.00 0.00 3.96
818 943 1.739466 CCGCTAGTTGTCAATGCATGT 59.261 47.619 0.00 0.00 0.00 3.21
819 944 2.162208 CCGCTAGTTGTCAATGCATGTT 59.838 45.455 0.00 0.00 0.00 2.71
820 945 3.373748 CCGCTAGTTGTCAATGCATGTTA 59.626 43.478 0.00 0.00 0.00 2.41
821 946 4.494690 CCGCTAGTTGTCAATGCATGTTAG 60.495 45.833 0.00 0.00 0.00 2.34
822 947 4.346129 GCTAGTTGTCAATGCATGTTAGC 58.654 43.478 0.00 3.11 0.00 3.09
830 955 2.553962 TGCATGTTAGCACACGCAT 58.446 47.368 0.00 0.00 46.87 4.73
831 956 0.447406 TGCATGTTAGCACACGCATC 59.553 50.000 0.00 0.00 46.87 3.91
832 957 0.587242 GCATGTTAGCACACGCATCG 60.587 55.000 0.00 0.00 41.91 3.84
833 958 0.998669 CATGTTAGCACACGCATCGA 59.001 50.000 0.00 0.00 42.27 3.59
835 960 1.720805 TGTTAGCACACGCATCGATT 58.279 45.000 0.00 0.00 42.27 3.34
836 961 1.658596 TGTTAGCACACGCATCGATTC 59.341 47.619 0.00 0.00 42.27 2.52
837 962 1.658596 GTTAGCACACGCATCGATTCA 59.341 47.619 0.00 0.00 42.27 2.57
838 963 2.223537 TAGCACACGCATCGATTCAT 57.776 45.000 0.00 0.00 42.27 2.57
839 964 2.223537 AGCACACGCATCGATTCATA 57.776 45.000 0.00 0.00 42.27 2.15
840 965 2.759191 AGCACACGCATCGATTCATAT 58.241 42.857 0.00 0.00 42.27 1.78
841 966 2.477754 AGCACACGCATCGATTCATATG 59.522 45.455 0.00 0.00 42.27 1.78
874 1008 4.819783 CTGGTTACAGCCTTGGCA 57.180 55.556 14.54 0.00 38.01 4.92
895 1029 4.432115 GCACAACGTACTTTCGCTAGTTAC 60.432 45.833 0.00 0.00 0.00 2.50
896 1030 4.676471 CACAACGTACTTTCGCTAGTTACA 59.324 41.667 0.00 0.00 0.00 2.41
897 1031 5.344128 CACAACGTACTTTCGCTAGTTACAT 59.656 40.000 0.00 0.00 0.00 2.29
898 1032 6.524239 CACAACGTACTTTCGCTAGTTACATA 59.476 38.462 0.00 0.00 0.00 2.29
899 1033 7.219535 CACAACGTACTTTCGCTAGTTACATAT 59.780 37.037 0.00 0.00 0.00 1.78
900 1034 8.397906 ACAACGTACTTTCGCTAGTTACATATA 58.602 33.333 0.00 0.00 0.00 0.86
901 1035 8.676761 CAACGTACTTTCGCTAGTTACATATAC 58.323 37.037 0.00 0.00 0.00 1.47
903 1037 6.517714 CGTACTTTCGCTAGTTACATATACCG 59.482 42.308 0.00 0.00 0.00 4.02
904 1038 6.624352 ACTTTCGCTAGTTACATATACCGA 57.376 37.500 0.00 0.00 0.00 4.69
905 1039 6.666417 ACTTTCGCTAGTTACATATACCGAG 58.334 40.000 0.00 0.00 0.00 4.63
906 1040 6.261826 ACTTTCGCTAGTTACATATACCGAGT 59.738 38.462 0.00 0.00 0.00 4.18
945 1088 8.998377 GCCACCAAGTTTATCATTTACATTTTT 58.002 29.630 0.00 0.00 0.00 1.94
957 1100 4.627284 TTACATTTTTCAGGTCCGGAGA 57.373 40.909 3.06 0.00 0.00 3.71
959 1102 2.372172 ACATTTTTCAGGTCCGGAGAGT 59.628 45.455 3.06 0.00 0.00 3.24
960 1103 3.181443 ACATTTTTCAGGTCCGGAGAGTT 60.181 43.478 3.06 0.00 0.00 3.01
961 1104 2.543777 TTTTCAGGTCCGGAGAGTTG 57.456 50.000 3.06 0.68 0.00 3.16
962 1105 1.420430 TTTCAGGTCCGGAGAGTTGT 58.580 50.000 3.06 0.00 0.00 3.32
963 1106 1.420430 TTCAGGTCCGGAGAGTTGTT 58.580 50.000 3.06 0.00 0.00 2.83
965 1108 1.343465 TCAGGTCCGGAGAGTTGTTTC 59.657 52.381 3.06 0.00 0.00 2.78
966 1109 1.070134 CAGGTCCGGAGAGTTGTTTCA 59.930 52.381 3.06 0.00 0.00 2.69
967 1110 1.978580 AGGTCCGGAGAGTTGTTTCAT 59.021 47.619 3.06 0.00 0.00 2.57
968 1111 2.076863 GGTCCGGAGAGTTGTTTCATG 58.923 52.381 3.06 0.00 0.00 3.07
969 1112 1.464997 GTCCGGAGAGTTGTTTCATGC 59.535 52.381 3.06 0.00 0.00 4.06
970 1113 0.443869 CCGGAGAGTTGTTTCATGCG 59.556 55.000 0.00 0.00 0.00 4.73
972 1115 1.126846 CGGAGAGTTGTTTCATGCGTC 59.873 52.381 0.00 0.00 0.00 5.19
973 1116 1.464997 GGAGAGTTGTTTCATGCGTCC 59.535 52.381 0.00 0.00 0.00 4.79
974 1117 1.464997 GAGAGTTGTTTCATGCGTCCC 59.535 52.381 0.00 0.00 0.00 4.46
975 1118 0.521735 GAGTTGTTTCATGCGTCCCC 59.478 55.000 0.00 0.00 0.00 4.81
1037 1180 2.477845 TTGCTGCTGCTCTGTAATGA 57.522 45.000 17.00 0.00 40.48 2.57
1053 1196 0.030638 ATGAAGTTGGCAACGCACAC 59.969 50.000 24.12 15.68 42.51 3.82
1062 1205 2.016961 CAACGCACACTGCTCAACT 58.983 52.632 0.00 0.00 42.25 3.16
1157 1300 3.403038 CCTTGAGTAACTGGGACAACAG 58.597 50.000 0.00 0.00 44.03 3.16
1158 1301 3.403038 CTTGAGTAACTGGGACAACAGG 58.597 50.000 0.00 0.00 42.75 4.00
1291 1437 5.368523 TCTCTTGGAAACCTAACTTTCCTCA 59.631 40.000 11.10 0.00 46.64 3.86
1293 1439 3.735591 TGGAAACCTAACTTTCCTCACG 58.264 45.455 11.10 0.00 46.64 4.35
1308 1454 0.534203 TCACGTGGCTTGACCTTTCC 60.534 55.000 17.00 0.00 40.22 3.13
1431 1579 5.258051 TCACTTACCAACTGTTCCAACTTT 58.742 37.500 0.00 0.00 0.00 2.66
1504 1724 3.181450 ACTGGTCTTCCTTTCAAGTCTGG 60.181 47.826 0.00 0.00 34.23 3.86
1507 1727 2.057922 TCTTCCTTTCAAGTCTGGCCT 58.942 47.619 3.32 0.00 0.00 5.19
1523 1743 3.226777 TGGCCTACTTAGATCTCTCTGC 58.773 50.000 3.32 0.00 32.66 4.26
1536 1756 0.108615 TCTCTGCAAACTCGCTAGCC 60.109 55.000 9.66 0.00 0.00 3.93
1540 1760 2.453638 GCAAACTCGCTAGCCGGTC 61.454 63.158 9.66 0.00 37.59 4.79
1541 1761 1.080093 CAAACTCGCTAGCCGGTCA 60.080 57.895 9.66 0.00 37.59 4.02
1561 1781 6.163476 GGTCAAATTCCACCAAAATTAGACC 58.837 40.000 0.00 0.00 34.59 3.85
1563 1783 7.441836 GTCAAATTCCACCAAAATTAGACCTT 58.558 34.615 0.00 0.00 0.00 3.50
1573 1793 8.143835 CACCAAAATTAGACCTTCTTTCACATT 58.856 33.333 0.00 0.00 0.00 2.71
1590 1810 7.504924 TTCACATTTGTCCTACTTAAACCTG 57.495 36.000 0.00 0.00 0.00 4.00
1593 1813 6.485313 CACATTTGTCCTACTTAAACCTGTCA 59.515 38.462 0.00 0.00 0.00 3.58
1594 1814 6.710744 ACATTTGTCCTACTTAAACCTGTCAG 59.289 38.462 0.00 0.00 0.00 3.51
1595 1815 5.881923 TTGTCCTACTTAAACCTGTCAGT 57.118 39.130 0.00 0.00 0.00 3.41
1605 1825 6.556116 ACTTAAACCTGTCAGTAAACTCCCTA 59.444 38.462 0.00 0.00 0.00 3.53
1624 1844 2.781681 AGTGGGTCAAATTCCTACGG 57.218 50.000 0.00 0.00 40.56 4.02
1631 1851 3.558533 GGTCAAATTCCTACGGAAGTGGT 60.559 47.826 1.52 0.00 45.48 4.16
1635 1855 4.635699 AATTCCTACGGAAGTGGTCTTT 57.364 40.909 1.52 0.00 45.48 2.52
1641 1861 3.840124 ACGGAAGTGGTCTTTCTTTCT 57.160 42.857 0.00 0.00 46.97 2.52
1650 1870 5.306678 AGTGGTCTTTCTTTCTGATCTGACT 59.693 40.000 1.16 0.00 0.00 3.41
1652 1872 4.391523 GGTCTTTCTTTCTGATCTGACTGC 59.608 45.833 1.16 0.00 0.00 4.40
1656 1876 3.935315 TCTTTCTGATCTGACTGCCTTG 58.065 45.455 1.16 0.00 0.00 3.61
1666 1886 3.053320 TCTGACTGCCTTGGATCTCTCTA 60.053 47.826 0.00 0.00 0.00 2.43
1671 1892 4.287067 ACTGCCTTGGATCTCTCTAAAACA 59.713 41.667 0.00 0.00 0.00 2.83
1693 1914 2.912956 TGCTAGTGGGTCAAATTCCTCT 59.087 45.455 0.00 0.00 0.00 3.69
1754 2270 6.574350 TCTCTCTGTAAATTTGCTAGTAGGC 58.426 40.000 7.80 0.00 0.00 3.93
1791 2307 7.980099 CGAGTTTAGGCTTTCTTCCTAATCTAA 59.020 37.037 10.61 0.00 43.47 2.10
1920 2441 2.361119 CTCCCACATGCCATCTTGAATG 59.639 50.000 0.00 0.00 0.00 2.67
1943 2470 3.641437 TCTGGTTCGCTCCAAATTTTG 57.359 42.857 1.99 1.99 37.01 2.44
1970 2497 6.199719 GCTTGGAATTCAATATGCTAAGCAAC 59.800 38.462 7.93 0.00 37.08 4.17
1971 2498 6.772360 TGGAATTCAATATGCTAAGCAACA 57.228 33.333 7.93 0.00 43.62 3.33
1997 2524 1.069513 CCACCTAATATTGGCGACCGA 59.930 52.381 0.00 0.00 0.00 4.69
2000 2527 2.433239 ACCTAATATTGGCGACCGACTT 59.567 45.455 0.00 0.00 0.00 3.01
2006 2533 0.245539 TTGGCGACCGACTTCCTAAG 59.754 55.000 0.00 0.00 0.00 2.18
2015 2542 3.452627 ACCGACTTCCTAAGCTCATTCAT 59.547 43.478 0.00 0.00 0.00 2.57
2025 2552 7.568349 TCCTAAGCTCATTCATCTTACATTGT 58.432 34.615 0.00 0.00 0.00 2.71
2035 2564 7.667043 TTCATCTTACATTGTCTGGTAACAC 57.333 36.000 0.00 0.00 46.17 3.32
2117 2648 9.941664 GATTTATCAGATAACAGTTTCACATGG 57.058 33.333 2.01 0.00 0.00 3.66
2118 2649 9.685276 ATTTATCAGATAACAGTTTCACATGGA 57.315 29.630 2.01 0.00 0.00 3.41
2119 2650 9.685276 TTTATCAGATAACAGTTTCACATGGAT 57.315 29.630 2.01 0.00 0.00 3.41
2122 2653 9.857656 ATCAGATAACAGTTTCACATGGATAAT 57.142 29.630 0.00 0.00 0.00 1.28
2123 2654 9.685276 TCAGATAACAGTTTCACATGGATAATT 57.315 29.630 0.00 0.00 0.00 1.40
2124 2655 9.941664 CAGATAACAGTTTCACATGGATAATTC 57.058 33.333 0.00 0.00 0.00 2.17
2125 2656 9.125026 AGATAACAGTTTCACATGGATAATTCC 57.875 33.333 0.00 0.00 42.94 3.01
2126 2657 9.125026 GATAACAGTTTCACATGGATAATTCCT 57.875 33.333 0.00 0.00 43.07 3.36
2128 2659 7.865706 ACAGTTTCACATGGATAATTCCTAC 57.134 36.000 0.00 0.00 43.07 3.18
2129 2660 7.633789 ACAGTTTCACATGGATAATTCCTACT 58.366 34.615 0.00 0.00 43.07 2.57
2130 2661 8.109634 ACAGTTTCACATGGATAATTCCTACTT 58.890 33.333 0.00 0.00 43.07 2.24
2131 2662 8.616076 CAGTTTCACATGGATAATTCCTACTTC 58.384 37.037 0.00 0.00 43.07 3.01
2132 2663 8.552296 AGTTTCACATGGATAATTCCTACTTCT 58.448 33.333 0.00 0.00 43.07 2.85
2133 2664 9.178758 GTTTCACATGGATAATTCCTACTTCTT 57.821 33.333 0.00 0.00 43.07 2.52
2134 2665 9.753674 TTTCACATGGATAATTCCTACTTCTTT 57.246 29.630 0.00 0.00 43.07 2.52
2135 2666 9.753674 TTCACATGGATAATTCCTACTTCTTTT 57.246 29.630 0.00 0.00 43.07 2.27
2136 2667 9.177608 TCACATGGATAATTCCTACTTCTTTTG 57.822 33.333 0.00 0.00 43.07 2.44
2137 2668 8.408601 CACATGGATAATTCCTACTTCTTTTGG 58.591 37.037 0.00 0.00 43.07 3.28
2138 2669 7.561356 ACATGGATAATTCCTACTTCTTTTGGG 59.439 37.037 0.00 0.00 43.07 4.12
2139 2670 7.278724 TGGATAATTCCTACTTCTTTTGGGA 57.721 36.000 0.00 0.00 43.07 4.37
2140 2671 7.704727 TGGATAATTCCTACTTCTTTTGGGAA 58.295 34.615 0.00 0.00 43.07 3.97
2141 2672 7.834181 TGGATAATTCCTACTTCTTTTGGGAAG 59.166 37.037 0.00 0.00 43.54 3.46
2142 2673 5.984695 AATTCCTACTTCTTTTGGGAAGC 57.015 39.130 4.42 0.00 44.51 3.86
2143 2674 4.724279 TTCCTACTTCTTTTGGGAAGCT 57.276 40.909 4.42 0.00 44.51 3.74
2144 2675 4.724279 TCCTACTTCTTTTGGGAAGCTT 57.276 40.909 0.00 0.00 44.51 3.74
2145 2676 5.061721 TCCTACTTCTTTTGGGAAGCTTT 57.938 39.130 0.00 0.00 44.51 3.51
2146 2677 5.070685 TCCTACTTCTTTTGGGAAGCTTTC 58.929 41.667 0.00 0.00 44.51 2.62
2147 2678 4.827284 CCTACTTCTTTTGGGAAGCTTTCA 59.173 41.667 7.16 3.17 44.51 2.69
2148 2679 5.301805 CCTACTTCTTTTGGGAAGCTTTCAA 59.698 40.000 7.16 9.35 44.51 2.69
2149 2680 5.675684 ACTTCTTTTGGGAAGCTTTCAAA 57.324 34.783 18.69 18.69 44.51 2.69
2150 2681 6.239217 ACTTCTTTTGGGAAGCTTTCAAAT 57.761 33.333 21.42 9.88 44.51 2.32
2151 2682 6.283694 ACTTCTTTTGGGAAGCTTTCAAATC 58.716 36.000 21.42 1.75 44.51 2.17
2152 2683 6.098838 ACTTCTTTTGGGAAGCTTTCAAATCT 59.901 34.615 21.42 7.32 44.51 2.40
2153 2684 5.846203 TCTTTTGGGAAGCTTTCAAATCTG 58.154 37.500 21.42 16.38 31.60 2.90
2154 2685 5.598005 TCTTTTGGGAAGCTTTCAAATCTGA 59.402 36.000 21.42 17.64 31.60 3.27
2155 2686 4.853924 TTGGGAAGCTTTCAAATCTGAC 57.146 40.909 7.16 0.00 0.00 3.51
2156 2687 4.104383 TGGGAAGCTTTCAAATCTGACT 57.896 40.909 7.16 0.00 0.00 3.41
2157 2688 5.241403 TGGGAAGCTTTCAAATCTGACTA 57.759 39.130 7.16 0.00 0.00 2.59
2158 2689 5.819991 TGGGAAGCTTTCAAATCTGACTAT 58.180 37.500 7.16 0.00 0.00 2.12
2159 2690 6.248433 TGGGAAGCTTTCAAATCTGACTATT 58.752 36.000 7.16 0.00 0.00 1.73
2160 2691 6.375455 TGGGAAGCTTTCAAATCTGACTATTC 59.625 38.462 7.16 0.00 0.00 1.75
2161 2692 6.601217 GGGAAGCTTTCAAATCTGACTATTCT 59.399 38.462 7.16 0.00 0.00 2.40
2162 2693 7.770897 GGGAAGCTTTCAAATCTGACTATTCTA 59.229 37.037 7.16 0.00 0.00 2.10
2163 2694 9.167311 GGAAGCTTTCAAATCTGACTATTCTAA 57.833 33.333 0.00 0.00 0.00 2.10
2166 2697 8.951243 AGCTTTCAAATCTGACTATTCTAAACC 58.049 33.333 0.00 0.00 0.00 3.27
2167 2698 8.951243 GCTTTCAAATCTGACTATTCTAAACCT 58.049 33.333 0.00 0.00 0.00 3.50
2171 2702 9.658799 TCAAATCTGACTATTCTAAACCTTGAG 57.341 33.333 0.00 0.00 0.00 3.02
2172 2703 9.658799 CAAATCTGACTATTCTAAACCTTGAGA 57.341 33.333 0.00 0.00 0.00 3.27
2178 2709 9.886132 TGACTATTCTAAACCTTGAGAATAACC 57.114 33.333 6.39 3.17 41.71 2.85
2180 2711 9.892130 ACTATTCTAAACCTTGAGAATAACCTG 57.108 33.333 6.39 0.00 41.71 4.00
2181 2712 7.631717 ATTCTAAACCTTGAGAATAACCTGC 57.368 36.000 0.00 0.00 39.96 4.85
2182 2713 6.374417 TCTAAACCTTGAGAATAACCTGCT 57.626 37.500 0.00 0.00 0.00 4.24
2183 2714 6.779860 TCTAAACCTTGAGAATAACCTGCTT 58.220 36.000 0.00 0.00 0.00 3.91
2184 2715 5.712152 AAACCTTGAGAATAACCTGCTTG 57.288 39.130 0.00 0.00 0.00 4.01
2185 2716 4.640771 ACCTTGAGAATAACCTGCTTGA 57.359 40.909 0.00 0.00 0.00 3.02
2186 2717 4.985538 ACCTTGAGAATAACCTGCTTGAA 58.014 39.130 0.00 0.00 0.00 2.69
2187 2718 5.385198 ACCTTGAGAATAACCTGCTTGAAA 58.615 37.500 0.00 0.00 0.00 2.69
2188 2719 5.241728 ACCTTGAGAATAACCTGCTTGAAAC 59.758 40.000 0.00 0.00 0.00 2.78
2189 2720 5.241506 CCTTGAGAATAACCTGCTTGAAACA 59.758 40.000 0.00 0.00 0.00 2.83
2190 2721 6.239008 CCTTGAGAATAACCTGCTTGAAACAA 60.239 38.462 0.00 0.00 0.00 2.83
2191 2722 6.317789 TGAGAATAACCTGCTTGAAACAAG 57.682 37.500 7.07 7.07 0.00 3.16
2192 2723 5.241506 TGAGAATAACCTGCTTGAAACAAGG 59.758 40.000 12.36 0.95 0.00 3.61
2193 2724 4.524328 AGAATAACCTGCTTGAAACAAGGG 59.476 41.667 12.36 8.76 0.00 3.95
2194 2725 2.452600 AACCTGCTTGAAACAAGGGA 57.547 45.000 12.36 0.00 0.00 4.20
2195 2726 1.692411 ACCTGCTTGAAACAAGGGAC 58.308 50.000 12.36 0.00 0.00 4.46
2196 2727 1.064017 ACCTGCTTGAAACAAGGGACA 60.064 47.619 12.36 2.92 0.00 4.02
2197 2728 2.031120 CCTGCTTGAAACAAGGGACAA 58.969 47.619 12.36 0.00 0.00 3.18
2198 2729 2.223805 CCTGCTTGAAACAAGGGACAAC 60.224 50.000 12.36 0.00 0.00 3.32
2199 2730 2.426738 CTGCTTGAAACAAGGGACAACA 59.573 45.455 12.36 1.75 0.00 3.33
2200 2731 2.426738 TGCTTGAAACAAGGGACAACAG 59.573 45.455 12.36 0.00 0.00 3.16
2201 2732 2.687935 GCTTGAAACAAGGGACAACAGA 59.312 45.455 12.36 0.00 0.00 3.41
2202 2733 3.243201 GCTTGAAACAAGGGACAACAGAG 60.243 47.826 12.36 0.00 0.00 3.35
2203 2734 3.924114 TGAAACAAGGGACAACAGAGA 57.076 42.857 0.00 0.00 0.00 3.10
2204 2735 3.541632 TGAAACAAGGGACAACAGAGAC 58.458 45.455 0.00 0.00 0.00 3.36
2205 2736 3.199946 TGAAACAAGGGACAACAGAGACT 59.800 43.478 0.00 0.00 0.00 3.24
2206 2737 2.918712 ACAAGGGACAACAGAGACTG 57.081 50.000 0.00 0.00 37.52 3.51
2207 2738 1.417890 ACAAGGGACAACAGAGACTGG 59.582 52.381 0.00 0.00 35.51 4.00
2208 2739 1.059913 AAGGGACAACAGAGACTGGG 58.940 55.000 0.00 0.00 35.51 4.45
2209 2740 0.191064 AGGGACAACAGAGACTGGGA 59.809 55.000 0.00 0.00 35.51 4.37
2210 2741 0.610687 GGGACAACAGAGACTGGGAG 59.389 60.000 0.00 0.00 35.51 4.30
2211 2742 1.343069 GGACAACAGAGACTGGGAGT 58.657 55.000 0.00 0.00 35.51 3.85
2212 2743 1.694696 GGACAACAGAGACTGGGAGTT 59.305 52.381 0.00 0.00 35.51 3.01
2213 2744 2.289133 GGACAACAGAGACTGGGAGTTC 60.289 54.545 0.00 0.00 35.51 3.01
2214 2745 2.630580 GACAACAGAGACTGGGAGTTCT 59.369 50.000 0.00 0.00 35.51 3.01
2215 2746 3.041946 ACAACAGAGACTGGGAGTTCTT 58.958 45.455 0.00 0.00 35.51 2.52
2216 2747 4.223953 ACAACAGAGACTGGGAGTTCTTA 58.776 43.478 0.00 0.00 35.51 2.10
2217 2748 4.654262 ACAACAGAGACTGGGAGTTCTTAA 59.346 41.667 0.00 0.00 35.51 1.85
2218 2749 5.130477 ACAACAGAGACTGGGAGTTCTTAAA 59.870 40.000 0.00 0.00 35.51 1.52
2219 2750 6.183361 ACAACAGAGACTGGGAGTTCTTAAAT 60.183 38.462 0.00 0.00 35.51 1.40
2220 2751 5.799213 ACAGAGACTGGGAGTTCTTAAATG 58.201 41.667 0.00 0.00 35.51 2.32
2221 2752 4.633565 CAGAGACTGGGAGTTCTTAAATGC 59.366 45.833 0.00 0.00 0.00 3.56
2222 2753 4.287067 AGAGACTGGGAGTTCTTAAATGCA 59.713 41.667 0.00 0.00 0.00 3.96
2223 2754 4.327680 AGACTGGGAGTTCTTAAATGCAC 58.672 43.478 0.00 0.00 0.00 4.57
2224 2755 4.042187 AGACTGGGAGTTCTTAAATGCACT 59.958 41.667 0.00 0.00 0.00 4.40
2225 2756 5.248477 AGACTGGGAGTTCTTAAATGCACTA 59.752 40.000 0.00 0.00 0.00 2.74
2226 2757 5.876357 ACTGGGAGTTCTTAAATGCACTAA 58.124 37.500 0.00 0.00 0.00 2.24
2227 2758 5.940470 ACTGGGAGTTCTTAAATGCACTAAG 59.060 40.000 10.02 10.02 0.00 2.18
2228 2759 6.121776 TGGGAGTTCTTAAATGCACTAAGA 57.878 37.500 13.58 13.58 34.35 2.10
2229 2760 6.539173 TGGGAGTTCTTAAATGCACTAAGAA 58.461 36.000 20.97 20.97 41.08 2.52
2230 2761 7.001674 TGGGAGTTCTTAAATGCACTAAGAAA 58.998 34.615 24.22 12.60 43.50 2.52
2287 2818 9.744468 TTTTGGAAAGCTTTCAAATCTAACTAC 57.256 29.630 33.88 16.34 38.92 2.73
2324 2864 2.683211 ACCTGCTTGAAACAAGGGAT 57.317 45.000 12.36 0.00 0.00 3.85
2376 2916 5.479306 TGAGAAATTGTCGGTCTCTAAAGG 58.521 41.667 5.84 0.00 38.87 3.11
2413 2953 2.103771 TGAATCAGCTGCAGGGATCTAC 59.896 50.000 17.12 0.00 0.00 2.59
2451 2991 1.453669 CTATCCCCCAGCCTTGAGC 59.546 63.158 0.00 0.00 44.25 4.26
2513 3053 3.376546 CCCAGAGCATCAGAAAACTTAGC 59.623 47.826 0.00 0.00 37.82 3.09
2530 3070 5.250982 ACTTAGCGCCTTAATTAAACTGGT 58.749 37.500 2.29 0.68 0.00 4.00
2534 3074 5.250982 AGCGCCTTAATTAAACTGGTACTT 58.749 37.500 2.29 0.00 0.00 2.24
2642 3184 0.322975 CGGCCTAATCCCATCCTCTG 59.677 60.000 0.00 0.00 0.00 3.35
2672 3214 7.340699 CAAACTTACTCGATTGACATATCTGC 58.659 38.462 0.00 0.00 0.00 4.26
2701 3243 2.290896 TGAAAATGAGTTCGAGGGCCAT 60.291 45.455 6.18 0.00 0.00 4.40
2740 3282 0.608640 ACCTTCCACTCTTACGGCTG 59.391 55.000 0.00 0.00 0.00 4.85
2766 3308 4.082245 CCTTGGCGATAACAATTTCCAAGT 60.082 41.667 15.12 0.00 45.40 3.16
2828 3377 4.025040 TCATTGAATCTCAGCCACAACT 57.975 40.909 0.00 0.00 0.00 3.16
2830 3379 4.937620 TCATTGAATCTCAGCCACAACTAC 59.062 41.667 0.00 0.00 0.00 2.73
2872 3424 6.775708 TCACATTAGTACCCTTAAGCAACTT 58.224 36.000 0.00 0.00 0.00 2.66
2902 3454 9.466497 ACTTTGGATCTTTCATCAAATAAGCTA 57.534 29.630 0.00 0.00 0.00 3.32
3015 3567 4.251246 TGGCAACCTGTTGTCACC 57.749 55.556 12.93 5.84 46.83 4.02
3025 3577 0.534877 TGTTGTCACCGAGCATGCTT 60.535 50.000 23.61 2.39 0.00 3.91
3029 3581 3.535280 TGTCACCGAGCATGCTTAATA 57.465 42.857 23.61 4.10 0.00 0.98
3108 3660 4.093998 CCTCATCAATCTTGACCTTTCGTG 59.906 45.833 0.00 0.00 40.49 4.35
3269 3824 6.535508 GTCAGAGACACAATACTATTTGGTCC 59.464 42.308 0.00 0.00 32.13 4.46
3410 3965 4.101585 TCCCTAGAGTTGCCTACAATGATG 59.898 45.833 0.00 0.00 38.27 3.07
3547 8094 4.880886 TGACCTTGATATGAAATGTGCG 57.119 40.909 0.00 0.00 0.00 5.34
3564 8111 5.000012 TGTGCGGACAAAAGTTTTGTAAT 58.000 34.783 29.09 11.24 31.96 1.89
3570 8117 8.784994 TGCGGACAAAAGTTTTGTAATAGAATA 58.215 29.630 29.09 11.19 31.96 1.75
3722 8271 7.281774 ACACATGGTTGCATAACAAATTTTTGA 59.718 29.630 9.88 0.00 40.82 2.69
3846 8397 6.154203 TGTACATTGTGATTTGAAGCCAAA 57.846 33.333 0.00 0.00 45.28 3.28
3880 8431 7.643528 TCTTGACGATGATATGAATGCTTAC 57.356 36.000 0.00 0.00 0.00 2.34
3883 8434 8.437360 TTGACGATGATATGAATGCTTACTTT 57.563 30.769 0.00 0.00 0.00 2.66
3923 8475 1.303309 CCTCATCGGACATTCAAGCC 58.697 55.000 0.00 0.00 33.16 4.35
3959 8511 0.533085 GCTGAAGGGAACGATAGGCC 60.533 60.000 0.00 0.00 43.77 5.19
3978 8530 4.030913 GGCCACATAGCTCCAGGTATATA 58.969 47.826 0.00 0.00 36.68 0.86
3979 8531 4.656112 GGCCACATAGCTCCAGGTATATAT 59.344 45.833 0.00 0.00 36.68 0.86
3982 8534 7.674348 GGCCACATAGCTCCAGGTATATATATA 59.326 40.741 0.00 0.00 36.68 0.86
3983 8535 8.744652 GCCACATAGCTCCAGGTATATATATAG 58.255 40.741 2.53 0.00 36.68 1.31
4080 8633 6.381133 TGCTACAATCTTATCTCCTGACAGAA 59.619 38.462 3.32 0.00 0.00 3.02
4096 8649 1.672363 CAGAATATGCTCAAAGCGGCA 59.328 47.619 1.45 0.00 46.26 5.69
4131 8684 2.089201 GGGGATGTTTACAGTTTCGGG 58.911 52.381 0.00 0.00 0.00 5.14
4243 8796 9.181061 GGAACTATCCAGATAAGATACTACTCC 57.819 40.741 0.00 0.00 45.79 3.85
4244 8797 9.181061 GAACTATCCAGATAAGATACTACTCCC 57.819 40.741 0.00 0.00 0.00 4.30
4246 8799 8.554011 ACTATCCAGATAAGATACTACTCCCTC 58.446 40.741 0.00 0.00 0.00 4.30
4250 8803 9.800716 TCCAGATAAGATACTACTCCCTCTATA 57.199 37.037 0.00 0.00 0.00 1.31
4314 8867 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
4315 8868 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
4316 8869 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
4317 8870 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
4318 8871 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
4319 8872 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
4320 8873 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
4321 8874 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
4322 8875 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
4323 8876 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
4324 8877 8.995027 TTATATTAGTTTACGGAGGGAGTACA 57.005 34.615 0.00 0.00 0.00 2.90
4325 8878 9.592196 TTATATTAGTTTACGGAGGGAGTACAT 57.408 33.333 0.00 0.00 0.00 2.29
4327 8880 9.765295 ATATTAGTTTACGGAGGGAGTACATAT 57.235 33.333 0.00 0.00 0.00 1.78
4328 8881 7.902920 TTAGTTTACGGAGGGAGTACATATT 57.097 36.000 0.00 0.00 0.00 1.28
4329 8882 8.995027 TTAGTTTACGGAGGGAGTACATATTA 57.005 34.615 0.00 0.00 0.00 0.98
4330 8883 9.592196 TTAGTTTACGGAGGGAGTACATATTAT 57.408 33.333 0.00 0.00 0.00 1.28
4331 8884 8.488308 AGTTTACGGAGGGAGTACATATTATT 57.512 34.615 0.00 0.00 0.00 1.40
4332 8885 8.365647 AGTTTACGGAGGGAGTACATATTATTG 58.634 37.037 0.00 0.00 0.00 1.90
4563 9123 2.032528 CAGGTGCCACGTGGACAT 59.967 61.111 38.30 25.26 37.39 3.06
4635 9196 1.074926 ACCCGATCCAGAGCATCCT 60.075 57.895 0.00 0.00 33.66 3.24
4645 9208 1.225704 GAGCATCCTGTTCCCCCTG 59.774 63.158 0.00 0.00 0.00 4.45
4659 9222 2.444256 CCCTGTCCTCCCCCGATTC 61.444 68.421 0.00 0.00 0.00 2.52
4809 9406 0.744414 CCTGTTCGATCCGCCATTGT 60.744 55.000 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.215451 GATGGTGGACATGGCCCAGT 62.215 60.000 17.19 0.00 40.72 4.00
3 4 1.454479 CTGATGGTGGACATGGCCC 60.454 63.158 17.19 6.30 40.72 5.80
4 5 1.033746 CACTGATGGTGGACATGGCC 61.034 60.000 12.04 12.04 40.72 5.36
5 6 2.485677 CACTGATGGTGGACATGGC 58.514 57.895 0.00 0.00 40.72 4.40
14 15 4.164843 ACACCAAGTTTACACTGATGGT 57.835 40.909 0.35 0.35 42.66 3.55
15 16 5.763204 ACTTACACCAAGTTTACACTGATGG 59.237 40.000 0.00 0.00 45.54 3.51
16 17 6.861065 ACTTACACCAAGTTTACACTGATG 57.139 37.500 0.00 0.00 45.54 3.07
28 29 4.201647 CGTAATGCCGTAACTTACACCAAG 60.202 45.833 0.00 0.00 40.38 3.61
29 30 3.679025 CGTAATGCCGTAACTTACACCAA 59.321 43.478 0.00 0.00 0.00 3.67
30 31 3.252400 CGTAATGCCGTAACTTACACCA 58.748 45.455 0.00 0.00 0.00 4.17
31 32 2.604462 CCGTAATGCCGTAACTTACACC 59.396 50.000 0.00 0.00 0.00 4.16
32 33 3.253230 ACCGTAATGCCGTAACTTACAC 58.747 45.455 0.00 0.00 0.00 2.90
33 34 3.510719 GACCGTAATGCCGTAACTTACA 58.489 45.455 0.00 0.00 0.00 2.41
34 35 2.531508 CGACCGTAATGCCGTAACTTAC 59.468 50.000 0.00 0.00 0.00 2.34
35 36 2.796304 CGACCGTAATGCCGTAACTTA 58.204 47.619 0.00 0.00 0.00 2.24
36 37 1.632422 CGACCGTAATGCCGTAACTT 58.368 50.000 0.00 0.00 0.00 2.66
37 38 0.803380 GCGACCGTAATGCCGTAACT 60.803 55.000 0.00 0.00 0.00 2.24
38 39 1.632645 GCGACCGTAATGCCGTAAC 59.367 57.895 0.00 0.00 0.00 2.50
39 40 1.519013 GGCGACCGTAATGCCGTAA 60.519 57.895 0.00 0.00 39.30 3.18
40 41 2.104729 GGCGACCGTAATGCCGTA 59.895 61.111 0.00 0.00 39.30 4.02
50 51 5.322565 TATCCATTCGATATCGGCGACCG 62.323 52.174 24.12 16.49 39.30 4.79
51 52 0.242825 TCCATTCGATATCGGCGACC 59.757 55.000 24.12 3.46 37.52 4.79
52 53 2.279582 ATCCATTCGATATCGGCGAC 57.720 50.000 24.12 0.00 37.52 5.19
53 54 2.750712 TGTATCCATTCGATATCGGCGA 59.249 45.455 24.12 13.87 35.87 5.54
54 55 2.852413 GTGTATCCATTCGATATCGGCG 59.148 50.000 24.12 12.72 35.87 6.46
55 56 2.852413 CGTGTATCCATTCGATATCGGC 59.148 50.000 24.12 6.20 35.87 5.54
56 57 4.351131 TCGTGTATCCATTCGATATCGG 57.649 45.455 24.12 8.87 35.87 4.18
57 58 6.871044 AAATCGTGTATCCATTCGATATCG 57.129 37.500 19.14 19.14 41.17 2.92
58 59 8.912787 AGTAAATCGTGTATCCATTCGATATC 57.087 34.615 0.00 0.00 41.17 1.63
67 68 4.678574 CGGGTCAAGTAAATCGTGTATCCA 60.679 45.833 0.00 0.00 0.00 3.41
68 69 3.800506 CGGGTCAAGTAAATCGTGTATCC 59.199 47.826 0.00 0.00 0.00 2.59
75 76 3.486875 GGATTTGCGGGTCAAGTAAATCG 60.487 47.826 11.48 0.00 45.33 3.34
77 78 3.426615 TGGATTTGCGGGTCAAGTAAAT 58.573 40.909 0.00 0.00 36.79 1.40
92 93 7.716560 CCTTCTTGGTTTTCTTTTGATGGATTT 59.283 33.333 0.00 0.00 0.00 2.17
94 95 6.554605 TCCTTCTTGGTTTTCTTTTGATGGAT 59.445 34.615 0.00 0.00 37.07 3.41
97 98 6.479990 GGTTCCTTCTTGGTTTTCTTTTGATG 59.520 38.462 0.00 0.00 37.07 3.07
101 102 5.483937 AGTGGTTCCTTCTTGGTTTTCTTTT 59.516 36.000 0.00 0.00 37.07 2.27
112 113 4.527038 TCAGATCGTAAGTGGTTCCTTCTT 59.473 41.667 0.00 0.00 39.48 2.52
117 118 4.332819 CCATTTCAGATCGTAAGTGGTTCC 59.667 45.833 13.20 0.00 39.48 3.62
130 131 2.684001 TTACGACGGCCATTTCAGAT 57.316 45.000 2.24 0.00 0.00 2.90
138 139 3.612241 CGTATGGATATTTACGACGGCCA 60.612 47.826 2.24 0.00 42.83 5.36
139 140 2.919229 CGTATGGATATTTACGACGGCC 59.081 50.000 0.00 0.00 42.83 6.13
177 181 9.084533 TCCAGCTAATACAAGTTTGGTTATTTT 57.915 29.630 0.00 0.00 0.00 1.82
181 185 8.354426 GTTTTCCAGCTAATACAAGTTTGGTTA 58.646 33.333 0.00 0.00 0.00 2.85
185 191 6.664515 TCGTTTTCCAGCTAATACAAGTTTG 58.335 36.000 0.00 0.00 0.00 2.93
187 193 6.228258 TCTCGTTTTCCAGCTAATACAAGTT 58.772 36.000 0.00 0.00 0.00 2.66
188 194 5.790593 TCTCGTTTTCCAGCTAATACAAGT 58.209 37.500 0.00 0.00 0.00 3.16
189 195 6.402226 GGTTCTCGTTTTCCAGCTAATACAAG 60.402 42.308 0.00 0.00 0.00 3.16
190 196 5.410439 GGTTCTCGTTTTCCAGCTAATACAA 59.590 40.000 0.00 0.00 0.00 2.41
191 197 4.933400 GGTTCTCGTTTTCCAGCTAATACA 59.067 41.667 0.00 0.00 0.00 2.29
192 198 5.176592 AGGTTCTCGTTTTCCAGCTAATAC 58.823 41.667 0.00 0.00 0.00 1.89
193 199 5.046878 TGAGGTTCTCGTTTTCCAGCTAATA 60.047 40.000 0.00 0.00 32.35 0.98
194 200 4.254492 GAGGTTCTCGTTTTCCAGCTAAT 58.746 43.478 0.00 0.00 0.00 1.73
245 251 0.171007 CGGTTTCGATGCTGGCAAAT 59.829 50.000 0.00 0.00 39.00 2.32
250 256 2.802667 CGAGCGGTTTCGATGCTGG 61.803 63.158 6.69 2.69 43.03 4.85
277 283 1.465777 CATCTTCTGCGTTGATGTGCA 59.534 47.619 0.00 0.00 39.13 4.57
297 303 1.374758 CAGCCAGAACCGGACAGAC 60.375 63.158 9.46 0.00 0.00 3.51
310 316 1.548081 CATTGACCATTGTCCAGCCA 58.452 50.000 0.00 0.00 41.01 4.75
313 319 2.220653 ACCCATTGACCATTGTCCAG 57.779 50.000 0.00 0.00 41.01 3.86
314 320 2.916269 TCTACCCATTGACCATTGTCCA 59.084 45.455 0.00 0.00 41.01 4.02
324 356 1.203376 TCCCACAGGTCTACCCATTGA 60.203 52.381 0.00 0.00 36.42 2.57
358 391 1.442520 CAAGGTTGTCGCGGCATTG 60.443 57.895 16.97 13.21 0.00 2.82
359 392 1.852067 GACAAGGTTGTCGCGGCATT 61.852 55.000 16.97 2.33 46.80 3.56
381 416 3.006940 TCTTTGTTGTCGCTGTTTGAGT 58.993 40.909 0.00 0.00 0.00 3.41
409 444 3.146066 ACCGCTATTTTTCACAGCTCAA 58.854 40.909 0.00 0.00 33.03 3.02
410 445 2.778299 ACCGCTATTTTTCACAGCTCA 58.222 42.857 0.00 0.00 33.03 4.26
411 447 3.831715 AACCGCTATTTTTCACAGCTC 57.168 42.857 0.00 0.00 33.03 4.09
414 450 5.390613 CCAGTAAACCGCTATTTTTCACAG 58.609 41.667 0.00 0.00 0.00 3.66
423 459 3.994931 AACTTCCCAGTAAACCGCTAT 57.005 42.857 0.00 0.00 30.68 2.97
438 474 2.742589 GACCTGGAATCCGTCAAACTTC 59.257 50.000 0.00 0.00 0.00 3.01
485 522 4.442706 TGAAATTCTCAGGCCTTATCGTC 58.557 43.478 0.00 0.00 0.00 4.20
486 523 4.446371 CTGAAATTCTCAGGCCTTATCGT 58.554 43.478 0.00 0.00 46.89 3.73
513 599 4.685848 GCCTCACATCCACACATTGGTATA 60.686 45.833 0.00 0.00 46.97 1.47
516 602 1.887956 GCCTCACATCCACACATTGGT 60.888 52.381 0.00 0.00 46.97 3.67
518 604 0.813184 GGCCTCACATCCACACATTG 59.187 55.000 0.00 0.00 0.00 2.82
576 662 0.250038 GCTGTGGACTGTTGCTCAGA 60.250 55.000 14.40 0.00 46.27 3.27
604 698 0.766131 TGGTATTGTCGGGTGGTGTT 59.234 50.000 0.00 0.00 0.00 3.32
607 701 0.322187 GCTTGGTATTGTCGGGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
608 702 0.322098 TGCTTGGTATTGTCGGGTGG 60.322 55.000 0.00 0.00 0.00 4.61
615 712 2.143122 CGTGTGTCTGCTTGGTATTGT 58.857 47.619 0.00 0.00 0.00 2.71
619 716 1.301401 GCCGTGTGTCTGCTTGGTA 60.301 57.895 0.00 0.00 0.00 3.25
642 739 2.185608 GTCCGGAGAGCAGAAGGC 59.814 66.667 3.06 0.00 45.30 4.35
644 741 1.153667 GCTGTCCGGAGAGCAGAAG 60.154 63.158 40.17 13.36 45.86 2.85
645 742 2.973899 GCTGTCCGGAGAGCAGAA 59.026 61.111 40.17 0.00 45.86 3.02
658 761 0.179045 AGAAAACGCACCTCTGCTGT 60.179 50.000 0.00 0.00 41.77 4.40
695 799 8.686334 AGACAAGTCTCACAACACAAATAAATT 58.314 29.630 0.00 0.00 34.17 1.82
696 800 8.225603 AGACAAGTCTCACAACACAAATAAAT 57.774 30.769 0.00 0.00 34.17 1.40
720 837 3.063997 CGTGCCTAATTAAGCCACAAGAG 59.936 47.826 3.63 0.00 0.00 2.85
721 838 3.006940 CGTGCCTAATTAAGCCACAAGA 58.993 45.455 3.63 0.00 0.00 3.02
724 841 2.483014 ACGTGCCTAATTAAGCCACA 57.517 45.000 3.63 0.00 0.00 4.17
725 842 4.393990 ACTTTACGTGCCTAATTAAGCCAC 59.606 41.667 0.00 2.49 0.00 5.01
726 843 4.581868 ACTTTACGTGCCTAATTAAGCCA 58.418 39.130 0.00 0.00 0.00 4.75
727 844 4.632688 TGACTTTACGTGCCTAATTAAGCC 59.367 41.667 0.00 0.00 0.00 4.35
728 845 5.121142 TGTGACTTTACGTGCCTAATTAAGC 59.879 40.000 0.00 0.00 0.00 3.09
729 846 6.531439 GTGTGACTTTACGTGCCTAATTAAG 58.469 40.000 0.00 0.00 0.00 1.85
731 848 4.622313 CGTGTGACTTTACGTGCCTAATTA 59.378 41.667 0.00 0.00 35.70 1.40
732 849 3.430895 CGTGTGACTTTACGTGCCTAATT 59.569 43.478 0.00 0.00 35.70 1.40
733 850 2.991190 CGTGTGACTTTACGTGCCTAAT 59.009 45.455 0.00 0.00 35.70 1.73
734 851 2.396601 CGTGTGACTTTACGTGCCTAA 58.603 47.619 0.00 0.00 35.70 2.69
735 852 2.054687 CGTGTGACTTTACGTGCCTA 57.945 50.000 0.00 0.00 35.70 3.93
736 853 2.895039 CGTGTGACTTTACGTGCCT 58.105 52.632 0.00 0.00 35.70 4.75
741 858 4.977741 AATGGTTACGTGTGACTTTACG 57.022 40.909 0.00 0.00 45.19 3.18
742 859 4.907582 GCAAATGGTTACGTGTGACTTTAC 59.092 41.667 0.00 0.00 0.00 2.01
743 860 4.817464 AGCAAATGGTTACGTGTGACTTTA 59.183 37.500 0.00 0.00 0.00 1.85
744 861 3.630312 AGCAAATGGTTACGTGTGACTTT 59.370 39.130 0.00 0.00 0.00 2.66
745 862 3.211045 AGCAAATGGTTACGTGTGACTT 58.789 40.909 0.00 0.00 0.00 3.01
746 863 2.846193 AGCAAATGGTTACGTGTGACT 58.154 42.857 0.00 0.00 0.00 3.41
747 864 4.735662 TTAGCAAATGGTTACGTGTGAC 57.264 40.909 0.00 0.00 0.00 3.67
748 865 4.319911 GCTTTAGCAAATGGTTACGTGTGA 60.320 41.667 0.00 0.00 41.59 3.58
749 866 3.911964 GCTTTAGCAAATGGTTACGTGTG 59.088 43.478 0.00 0.00 41.59 3.82
750 867 3.818773 AGCTTTAGCAAATGGTTACGTGT 59.181 39.130 0.00 0.00 45.16 4.49
751 868 4.419522 AGCTTTAGCAAATGGTTACGTG 57.580 40.909 0.00 0.00 45.16 4.49
752 869 6.183360 GGAATAGCTTTAGCAAATGGTTACGT 60.183 38.462 4.33 0.00 45.16 3.57
753 870 6.183360 TGGAATAGCTTTAGCAAATGGTTACG 60.183 38.462 4.33 0.00 45.16 3.18
754 871 7.095695 TGGAATAGCTTTAGCAAATGGTTAC 57.904 36.000 4.33 0.00 45.16 2.50
755 872 7.896383 ATGGAATAGCTTTAGCAAATGGTTA 57.104 32.000 4.33 0.00 45.16 2.85
774 896 7.543868 CGGTTTGTTATTTGAAGCATAATGGAA 59.456 33.333 0.00 0.00 0.00 3.53
795 920 2.226330 TGCATTGACAACTAGCGGTTT 58.774 42.857 0.00 0.00 35.74 3.27
796 921 1.890876 TGCATTGACAACTAGCGGTT 58.109 45.000 0.00 0.00 38.93 4.44
806 931 2.095819 CGTGTGCTAACATGCATTGACA 60.096 45.455 0.00 0.00 45.23 3.58
814 939 0.998669 TCGATGCGTGTGCTAACATG 59.001 50.000 0.00 0.00 44.76 3.21
815 940 1.939974 ATCGATGCGTGTGCTAACAT 58.060 45.000 0.00 0.00 43.34 2.71
816 941 1.658596 GAATCGATGCGTGTGCTAACA 59.341 47.619 0.00 0.00 43.34 2.41
818 943 2.003196 TGAATCGATGCGTGTGCTAA 57.997 45.000 0.00 0.00 43.34 3.09
819 944 2.223537 ATGAATCGATGCGTGTGCTA 57.776 45.000 0.00 0.00 43.34 3.49
820 945 2.223537 TATGAATCGATGCGTGTGCT 57.776 45.000 8.49 0.00 43.34 4.40
821 946 2.476241 TCATATGAATCGATGCGTGTGC 59.524 45.455 15.68 0.00 43.20 4.57
822 947 4.916099 ATCATATGAATCGATGCGTGTG 57.084 40.909 14.61 14.61 0.00 3.82
823 948 7.601073 AATAATCATATGAATCGATGCGTGT 57.399 32.000 9.99 0.00 0.00 4.49
826 951 8.885302 AACAAATAATCATATGAATCGATGCG 57.115 30.769 9.99 0.00 0.00 4.73
827 952 9.830294 TGAACAAATAATCATATGAATCGATGC 57.170 29.630 9.99 0.00 0.00 3.91
841 966 9.503427 GCTGTAACCAGTTATGAACAAATAATC 57.497 33.333 0.00 0.00 41.02 1.75
856 981 0.537371 GTGCCAAGGCTGTAACCAGT 60.537 55.000 12.96 0.00 41.02 4.00
868 1002 1.659211 GCGAAAGTACGTTGTGCCAAG 60.659 52.381 0.00 0.00 35.59 3.61
870 1004 0.531090 AGCGAAAGTACGTTGTGCCA 60.531 50.000 0.00 0.00 35.59 4.92
874 1008 4.858935 TGTAACTAGCGAAAGTACGTTGT 58.141 39.130 0.00 0.00 35.59 3.32
883 1017 6.624352 ACTCGGTATATGTAACTAGCGAAA 57.376 37.500 5.54 0.00 44.30 3.46
885 1019 6.459066 ACTACTCGGTATATGTAACTAGCGA 58.541 40.000 4.17 4.17 43.23 4.93
895 1029 6.473778 GCATGCTATGAACTACTCGGTATATG 59.526 42.308 11.37 0.00 0.00 1.78
896 1030 6.405953 GGCATGCTATGAACTACTCGGTATAT 60.406 42.308 18.92 0.00 0.00 0.86
897 1031 5.105877 GGCATGCTATGAACTACTCGGTATA 60.106 44.000 18.92 0.00 0.00 1.47
898 1032 4.322049 GGCATGCTATGAACTACTCGGTAT 60.322 45.833 18.92 0.00 0.00 2.73
899 1033 3.005472 GGCATGCTATGAACTACTCGGTA 59.995 47.826 18.92 0.00 0.00 4.02
900 1034 2.224066 GGCATGCTATGAACTACTCGGT 60.224 50.000 18.92 0.00 0.00 4.69
901 1035 2.224042 TGGCATGCTATGAACTACTCGG 60.224 50.000 18.92 0.00 0.00 4.63
903 1037 3.134458 GGTGGCATGCTATGAACTACTC 58.866 50.000 18.92 0.00 0.00 2.59
904 1038 2.505407 TGGTGGCATGCTATGAACTACT 59.495 45.455 18.92 0.00 0.00 2.57
905 1039 2.917933 TGGTGGCATGCTATGAACTAC 58.082 47.619 18.92 0.00 0.00 2.73
906 1040 3.054434 ACTTGGTGGCATGCTATGAACTA 60.054 43.478 18.92 4.02 0.00 2.24
915 1049 3.806625 ATGATAAACTTGGTGGCATGC 57.193 42.857 9.90 9.90 0.00 4.06
945 1088 1.343465 GAAACAACTCTCCGGACCTGA 59.657 52.381 0.00 0.00 0.00 3.86
951 1094 0.443869 CGCATGAAACAACTCTCCGG 59.556 55.000 0.00 0.00 0.00 5.14
952 1095 1.126846 GACGCATGAAACAACTCTCCG 59.873 52.381 0.00 0.00 0.00 4.63
957 1100 0.893727 GGGGGACGCATGAAACAACT 60.894 55.000 0.00 0.00 42.57 3.16
959 1102 4.089105 GGGGGACGCATGAAACAA 57.911 55.556 0.00 0.00 42.57 2.83
974 1117 3.835790 TTCGTCGGTTGCTTGGGGG 62.836 63.158 0.00 0.00 0.00 5.40
975 1118 2.281208 TTCGTCGGTTGCTTGGGG 60.281 61.111 0.00 0.00 0.00 4.96
1037 1180 1.433064 CAGTGTGCGTTGCCAACTT 59.567 52.632 5.96 0.00 0.00 2.66
1053 1196 3.745975 TGTTTTCGTGGATAGTTGAGCAG 59.254 43.478 0.00 0.00 0.00 4.24
1062 1205 1.068402 TCGACGCTGTTTTCGTGGATA 60.068 47.619 0.00 0.00 39.17 2.59
1100 1243 1.093159 GGTGATGCTCTGCTTGAAGG 58.907 55.000 0.00 0.00 0.00 3.46
1157 1300 4.021925 AGCGGCAGAAGTGGGTCC 62.022 66.667 1.45 0.00 0.00 4.46
1158 1301 2.743928 CAGCGGCAGAAGTGGGTC 60.744 66.667 1.45 0.00 0.00 4.46
1264 1410 4.642466 AAGTTAGGTTTCCAAGAGAGGG 57.358 45.455 0.00 0.00 0.00 4.30
1291 1437 1.597027 CGGAAAGGTCAAGCCACGT 60.597 57.895 0.00 0.00 40.61 4.49
1293 1439 1.971695 CCCGGAAAGGTCAAGCCAC 60.972 63.158 0.73 0.00 40.61 5.01
1308 1454 0.879090 GGCCAACAAAGTAGTTCCCG 59.121 55.000 0.00 0.00 0.00 5.14
1444 1592 2.761208 CCACGAGGGAGTTTACAGAGAT 59.239 50.000 0.00 0.00 40.01 2.75
1504 1724 4.927978 TTGCAGAGAGATCTAAGTAGGC 57.072 45.455 0.00 0.00 0.00 3.93
1507 1727 5.449314 GCGAGTTTGCAGAGAGATCTAAGTA 60.449 44.000 0.00 0.00 34.15 2.24
1523 1743 0.669318 TTGACCGGCTAGCGAGTTTG 60.669 55.000 9.00 0.00 0.00 2.93
1536 1756 5.861787 GTCTAATTTTGGTGGAATTTGACCG 59.138 40.000 10.78 0.00 40.29 4.79
1540 1760 7.670364 AGAAGGTCTAATTTTGGTGGAATTTG 58.330 34.615 0.00 0.00 0.00 2.32
1541 1761 7.855784 AGAAGGTCTAATTTTGGTGGAATTT 57.144 32.000 0.00 0.00 0.00 1.82
1561 1781 9.665264 GTTTAAGTAGGACAAATGTGAAAGAAG 57.335 33.333 0.00 0.00 0.00 2.85
1563 1783 7.996644 AGGTTTAAGTAGGACAAATGTGAAAGA 59.003 33.333 0.00 0.00 0.00 2.52
1573 1793 5.881923 ACTGACAGGTTTAAGTAGGACAA 57.118 39.130 7.51 0.00 0.00 3.18
1624 1844 6.147000 GTCAGATCAGAAAGAAAGACCACTTC 59.853 42.308 0.00 0.00 35.05 3.01
1631 1851 4.285517 AGGCAGTCAGATCAGAAAGAAAGA 59.714 41.667 0.00 0.00 0.00 2.52
1635 1855 3.307269 CCAAGGCAGTCAGATCAGAAAGA 60.307 47.826 0.00 0.00 0.00 2.52
1641 1861 2.433604 GAGATCCAAGGCAGTCAGATCA 59.566 50.000 0.00 0.00 36.61 2.92
1650 1870 4.908601 TGTTTTAGAGAGATCCAAGGCA 57.091 40.909 0.00 0.00 0.00 4.75
1652 1872 5.435291 AGCATGTTTTAGAGAGATCCAAGG 58.565 41.667 0.00 0.00 0.00 3.61
1656 1876 5.988561 CCACTAGCATGTTTTAGAGAGATCC 59.011 44.000 0.00 0.00 0.00 3.36
1666 1886 5.279456 GGAATTTGACCCACTAGCATGTTTT 60.279 40.000 0.00 0.00 0.00 2.43
1671 1892 3.525199 AGAGGAATTTGACCCACTAGCAT 59.475 43.478 0.00 0.00 0.00 3.79
1693 1914 4.431416 TTTGGCAGGAAGTCTAGTTTCA 57.569 40.909 10.44 0.00 0.00 2.69
1754 2270 2.683362 GCCTAAACTCGGAGGAATTTGG 59.317 50.000 10.23 11.86 34.46 3.28
1801 2317 6.374333 CCCCTTAAGTTGATTTGATCGAAGAA 59.626 38.462 0.97 0.00 43.58 2.52
1821 2337 0.918310 AGCTCAGGAATGCTCCCCTT 60.918 55.000 0.00 0.00 43.64 3.95
1920 2441 1.168714 ATTTGGAGCGAACCAGAAGC 58.831 50.000 0.00 0.00 41.19 3.86
1943 2470 5.776744 CTTAGCATATTGAATTCCAAGCCC 58.223 41.667 2.27 0.00 38.31 5.19
1997 2524 7.187824 TGTAAGATGAATGAGCTTAGGAAGT 57.812 36.000 0.00 0.00 33.17 3.01
2000 2527 7.568349 ACAATGTAAGATGAATGAGCTTAGGA 58.432 34.615 0.00 0.00 33.17 2.94
2006 2533 5.587844 ACCAGACAATGTAAGATGAATGAGC 59.412 40.000 0.00 0.00 0.00 4.26
2015 2542 5.204409 ACGTGTTACCAGACAATGTAAGA 57.796 39.130 0.00 0.00 0.00 2.10
2025 2552 3.547054 ACCTTCAAACGTGTTACCAGA 57.453 42.857 0.00 0.00 0.00 3.86
2035 2564 2.161609 GCTGGGATGTTACCTTCAAACG 59.838 50.000 0.00 0.00 0.00 3.60
2115 2646 7.834181 CTTCCCAAAAGAAGTAGGAATTATCCA 59.166 37.037 0.00 0.00 41.98 3.41
2116 2647 7.201830 GCTTCCCAAAAGAAGTAGGAATTATCC 60.202 40.741 3.47 0.00 44.27 2.59
2117 2648 7.558081 AGCTTCCCAAAAGAAGTAGGAATTATC 59.442 37.037 3.47 0.00 44.27 1.75
2118 2649 7.414266 AGCTTCCCAAAAGAAGTAGGAATTAT 58.586 34.615 3.47 0.00 44.27 1.28
2119 2650 6.790319 AGCTTCCCAAAAGAAGTAGGAATTA 58.210 36.000 3.47 0.00 44.27 1.40
2120 2651 5.645201 AGCTTCCCAAAAGAAGTAGGAATT 58.355 37.500 3.47 0.00 44.27 2.17
2121 2652 5.262455 AGCTTCCCAAAAGAAGTAGGAAT 57.738 39.130 3.47 0.00 44.27 3.01
2122 2653 4.724279 AGCTTCCCAAAAGAAGTAGGAA 57.276 40.909 3.47 0.00 44.27 3.36
2123 2654 4.724279 AAGCTTCCCAAAAGAAGTAGGA 57.276 40.909 0.00 0.00 44.27 2.94
2124 2655 4.827284 TGAAAGCTTCCCAAAAGAAGTAGG 59.173 41.667 0.00 0.00 44.27 3.18
2125 2656 6.391227 TTGAAAGCTTCCCAAAAGAAGTAG 57.609 37.500 0.00 0.00 44.27 2.57
2126 2657 6.783708 TTTGAAAGCTTCCCAAAAGAAGTA 57.216 33.333 18.75 1.87 44.27 2.24
2127 2658 5.675684 TTTGAAAGCTTCCCAAAAGAAGT 57.324 34.783 18.75 0.00 44.27 3.01
2128 2659 6.423001 CAGATTTGAAAGCTTCCCAAAAGAAG 59.577 38.462 22.50 13.41 45.05 2.85
2129 2660 6.098124 TCAGATTTGAAAGCTTCCCAAAAGAA 59.902 34.615 22.50 11.43 34.08 2.52
2130 2661 5.598005 TCAGATTTGAAAGCTTCCCAAAAGA 59.402 36.000 22.50 18.46 34.08 2.52
2131 2662 5.693555 GTCAGATTTGAAAGCTTCCCAAAAG 59.306 40.000 22.50 17.17 34.49 2.27
2132 2663 5.363580 AGTCAGATTTGAAAGCTTCCCAAAA 59.636 36.000 22.50 12.27 34.49 2.44
2133 2664 4.895297 AGTCAGATTTGAAAGCTTCCCAAA 59.105 37.500 21.53 21.53 34.49 3.28
2134 2665 4.473444 AGTCAGATTTGAAAGCTTCCCAA 58.527 39.130 0.00 4.72 34.49 4.12
2135 2666 4.104383 AGTCAGATTTGAAAGCTTCCCA 57.896 40.909 0.00 0.00 34.49 4.37
2136 2667 6.601217 AGAATAGTCAGATTTGAAAGCTTCCC 59.399 38.462 0.00 0.00 34.49 3.97
2137 2668 7.622893 AGAATAGTCAGATTTGAAAGCTTCC 57.377 36.000 0.00 0.00 34.49 3.46
2140 2671 8.951243 GGTTTAGAATAGTCAGATTTGAAAGCT 58.049 33.333 0.00 0.00 34.49 3.74
2141 2672 8.951243 AGGTTTAGAATAGTCAGATTTGAAAGC 58.049 33.333 0.00 0.00 34.49 3.51
2145 2676 9.658799 CTCAAGGTTTAGAATAGTCAGATTTGA 57.341 33.333 0.00 0.00 0.00 2.69
2146 2677 9.658799 TCTCAAGGTTTAGAATAGTCAGATTTG 57.341 33.333 0.00 0.00 0.00 2.32
2152 2683 9.886132 GGTTATTCTCAAGGTTTAGAATAGTCA 57.114 33.333 6.50 0.00 42.59 3.41
2154 2685 9.892130 CAGGTTATTCTCAAGGTTTAGAATAGT 57.108 33.333 6.50 0.00 42.59 2.12
2155 2686 8.831550 GCAGGTTATTCTCAAGGTTTAGAATAG 58.168 37.037 6.50 0.00 42.59 1.73
2156 2687 8.548877 AGCAGGTTATTCTCAAGGTTTAGAATA 58.451 33.333 0.00 0.00 41.50 1.75
2157 2688 7.406104 AGCAGGTTATTCTCAAGGTTTAGAAT 58.594 34.615 4.89 4.89 43.23 2.40
2158 2689 6.779860 AGCAGGTTATTCTCAAGGTTTAGAA 58.220 36.000 0.00 0.00 36.24 2.10
2159 2690 6.374417 AGCAGGTTATTCTCAAGGTTTAGA 57.626 37.500 0.00 0.00 0.00 2.10
2160 2691 6.655003 TCAAGCAGGTTATTCTCAAGGTTTAG 59.345 38.462 0.00 0.00 0.00 1.85
2161 2692 6.539173 TCAAGCAGGTTATTCTCAAGGTTTA 58.461 36.000 0.00 0.00 0.00 2.01
2162 2693 5.385198 TCAAGCAGGTTATTCTCAAGGTTT 58.615 37.500 0.00 0.00 0.00 3.27
2163 2694 4.985538 TCAAGCAGGTTATTCTCAAGGTT 58.014 39.130 0.00 0.00 0.00 3.50
2164 2695 4.640771 TCAAGCAGGTTATTCTCAAGGT 57.359 40.909 0.00 0.00 0.00 3.50
2165 2696 5.241506 TGTTTCAAGCAGGTTATTCTCAAGG 59.758 40.000 0.00 0.00 0.00 3.61
2166 2697 6.317789 TGTTTCAAGCAGGTTATTCTCAAG 57.682 37.500 0.00 0.00 0.00 3.02
2167 2698 6.239008 CCTTGTTTCAAGCAGGTTATTCTCAA 60.239 38.462 4.22 0.00 0.00 3.02
2168 2699 5.241506 CCTTGTTTCAAGCAGGTTATTCTCA 59.758 40.000 4.22 0.00 0.00 3.27
2169 2700 5.335976 CCCTTGTTTCAAGCAGGTTATTCTC 60.336 44.000 4.22 0.00 0.00 2.87
2170 2701 4.524328 CCCTTGTTTCAAGCAGGTTATTCT 59.476 41.667 4.22 0.00 0.00 2.40
2171 2702 4.522789 TCCCTTGTTTCAAGCAGGTTATTC 59.477 41.667 4.22 0.00 0.00 1.75
2172 2703 4.280929 GTCCCTTGTTTCAAGCAGGTTATT 59.719 41.667 4.22 0.00 0.00 1.40
2173 2704 3.826729 GTCCCTTGTTTCAAGCAGGTTAT 59.173 43.478 4.22 0.00 0.00 1.89
2174 2705 3.219281 GTCCCTTGTTTCAAGCAGGTTA 58.781 45.455 4.22 0.00 0.00 2.85
2175 2706 2.031870 GTCCCTTGTTTCAAGCAGGTT 58.968 47.619 4.22 0.00 0.00 3.50
2176 2707 1.064017 TGTCCCTTGTTTCAAGCAGGT 60.064 47.619 4.22 0.00 0.00 4.00
2177 2708 1.691196 TGTCCCTTGTTTCAAGCAGG 58.309 50.000 4.22 2.20 0.00 4.85
2178 2709 2.426738 TGTTGTCCCTTGTTTCAAGCAG 59.573 45.455 4.22 0.00 0.00 4.24
2179 2710 2.426738 CTGTTGTCCCTTGTTTCAAGCA 59.573 45.455 4.22 0.00 0.00 3.91
2180 2711 2.687935 TCTGTTGTCCCTTGTTTCAAGC 59.312 45.455 4.22 0.00 0.00 4.01
2181 2712 4.035675 GTCTCTGTTGTCCCTTGTTTCAAG 59.964 45.833 2.90 2.90 0.00 3.02
2182 2713 3.945285 GTCTCTGTTGTCCCTTGTTTCAA 59.055 43.478 0.00 0.00 0.00 2.69
2183 2714 3.199946 AGTCTCTGTTGTCCCTTGTTTCA 59.800 43.478 0.00 0.00 0.00 2.69
2184 2715 3.561725 CAGTCTCTGTTGTCCCTTGTTTC 59.438 47.826 0.00 0.00 0.00 2.78
2185 2716 3.545703 CAGTCTCTGTTGTCCCTTGTTT 58.454 45.455 0.00 0.00 0.00 2.83
2186 2717 2.158755 CCAGTCTCTGTTGTCCCTTGTT 60.159 50.000 0.00 0.00 0.00 2.83
2187 2718 1.417890 CCAGTCTCTGTTGTCCCTTGT 59.582 52.381 0.00 0.00 0.00 3.16
2188 2719 1.271054 CCCAGTCTCTGTTGTCCCTTG 60.271 57.143 0.00 0.00 0.00 3.61
2189 2720 1.059913 CCCAGTCTCTGTTGTCCCTT 58.940 55.000 0.00 0.00 0.00 3.95
2190 2721 0.191064 TCCCAGTCTCTGTTGTCCCT 59.809 55.000 0.00 0.00 0.00 4.20
2191 2722 0.610687 CTCCCAGTCTCTGTTGTCCC 59.389 60.000 0.00 0.00 0.00 4.46
2192 2723 1.343069 ACTCCCAGTCTCTGTTGTCC 58.657 55.000 0.00 0.00 0.00 4.02
2193 2724 2.630580 AGAACTCCCAGTCTCTGTTGTC 59.369 50.000 0.00 0.00 0.00 3.18
2194 2725 2.683768 AGAACTCCCAGTCTCTGTTGT 58.316 47.619 0.00 0.00 0.00 3.32
2195 2726 3.760580 AAGAACTCCCAGTCTCTGTTG 57.239 47.619 0.00 0.00 0.00 3.33
2196 2727 5.888982 TTTAAGAACTCCCAGTCTCTGTT 57.111 39.130 0.00 0.00 0.00 3.16
2197 2728 5.799213 CATTTAAGAACTCCCAGTCTCTGT 58.201 41.667 0.00 0.00 0.00 3.41
2198 2729 4.633565 GCATTTAAGAACTCCCAGTCTCTG 59.366 45.833 0.00 0.00 0.00 3.35
2199 2730 4.287067 TGCATTTAAGAACTCCCAGTCTCT 59.713 41.667 0.00 0.00 0.00 3.10
2200 2731 4.393371 GTGCATTTAAGAACTCCCAGTCTC 59.607 45.833 0.00 0.00 0.00 3.36
2201 2732 4.042187 AGTGCATTTAAGAACTCCCAGTCT 59.958 41.667 0.00 0.00 0.00 3.24
2202 2733 4.327680 AGTGCATTTAAGAACTCCCAGTC 58.672 43.478 0.00 0.00 0.00 3.51
2203 2734 4.373156 AGTGCATTTAAGAACTCCCAGT 57.627 40.909 0.00 0.00 0.00 4.00
2204 2735 6.173339 TCTTAGTGCATTTAAGAACTCCCAG 58.827 40.000 16.70 0.00 34.97 4.45
2205 2736 6.121776 TCTTAGTGCATTTAAGAACTCCCA 57.878 37.500 16.70 0.00 34.97 4.37
2206 2737 7.448748 TTTCTTAGTGCATTTAAGAACTCCC 57.551 36.000 24.42 0.00 43.25 4.30
2216 2747 9.463443 GTGAAACTGTTATTTCTTAGTGCATTT 57.537 29.630 0.00 0.00 39.02 2.32
2217 2748 8.082242 GGTGAAACTGTTATTTCTTAGTGCATT 58.918 33.333 0.00 0.00 39.02 3.56
2218 2749 7.573096 CGGTGAAACTGTTATTTCTTAGTGCAT 60.573 37.037 0.00 0.00 38.78 3.96
2219 2750 6.293190 CGGTGAAACTGTTATTTCTTAGTGCA 60.293 38.462 0.00 0.00 38.78 4.57
2220 2751 6.077838 CGGTGAAACTGTTATTTCTTAGTGC 58.922 40.000 0.00 0.00 38.78 4.40
2221 2752 6.348213 CCCGGTGAAACTGTTATTTCTTAGTG 60.348 42.308 0.00 0.00 43.33 2.74
2222 2753 5.704053 CCCGGTGAAACTGTTATTTCTTAGT 59.296 40.000 0.00 0.00 43.33 2.24
2223 2754 5.935789 TCCCGGTGAAACTGTTATTTCTTAG 59.064 40.000 0.00 0.00 43.33 2.18
2224 2755 5.867330 TCCCGGTGAAACTGTTATTTCTTA 58.133 37.500 0.00 0.00 43.33 2.10
2225 2756 4.721132 TCCCGGTGAAACTGTTATTTCTT 58.279 39.130 0.00 0.00 43.33 2.52
2226 2757 4.360951 TCCCGGTGAAACTGTTATTTCT 57.639 40.909 0.00 0.00 43.33 2.52
2227 2758 6.746745 TTATCCCGGTGAAACTGTTATTTC 57.253 37.500 0.00 0.00 43.33 2.17
2228 2759 7.147966 GGAATTATCCCGGTGAAACTGTTATTT 60.148 37.037 0.00 0.00 43.33 1.40
2229 2760 6.320418 GGAATTATCCCGGTGAAACTGTTATT 59.680 38.462 0.00 0.00 43.33 1.40
2230 2761 5.826208 GGAATTATCCCGGTGAAACTGTTAT 59.174 40.000 0.00 0.00 43.33 1.89
2287 2818 4.640647 GCAGGTTATTCTCAAGGTTTAGGG 59.359 45.833 0.00 0.00 0.00 3.53
2324 2864 6.989155 TTTAAGAACTCCCAGTCTCTGTTA 57.011 37.500 0.00 0.00 0.00 2.41
2376 2916 7.434897 CAGCTGATTCAAAGAGACTGATAGTAC 59.565 40.741 8.42 0.00 0.00 2.73
2413 2953 1.064685 GGTTACCAATGGACTGGGGAG 60.065 57.143 6.16 0.00 41.16 4.30
2451 2991 4.108699 TGTTTCCAAACAGCAAGAGTTG 57.891 40.909 0.55 0.00 43.45 3.16
2463 3003 6.605594 ACTTGTCCTGATAAGTTGTTTCCAAA 59.394 34.615 3.74 0.00 39.27 3.28
2513 3053 5.413523 ACCAAGTACCAGTTTAATTAAGGCG 59.586 40.000 0.00 0.00 0.00 5.52
2642 3184 4.024387 TGTCAATCGAGTAAGTTTGCCAAC 60.024 41.667 0.00 0.00 0.00 3.77
2672 3214 6.425114 CCCTCGAACTCATTTTCACCTATATG 59.575 42.308 0.00 0.00 0.00 1.78
2701 3243 1.590591 TTCCCAAGCTGGCTGGTATA 58.409 50.000 2.31 0.00 35.79 1.47
2736 3278 1.748879 TTATCGCCAAGGTGCAGCC 60.749 57.895 13.29 4.65 37.58 4.85
2740 3282 2.939460 AATTGTTATCGCCAAGGTGC 57.061 45.000 0.00 0.00 0.00 5.01
2851 3400 9.310716 GTAGTAAGTTGCTTAAGGGTACTAATG 57.689 37.037 4.29 0.00 0.00 1.90
2995 3547 1.412343 GGTGACAACAGGTTGCCAAAT 59.588 47.619 11.84 0.00 44.03 2.32
3015 3567 5.809464 TGTGTGAAATATTAAGCATGCTCG 58.191 37.500 22.93 0.00 0.00 5.03
3361 3916 5.767816 TCTTACCAGAAGAAAGCAAAACC 57.232 39.130 0.00 0.00 0.00 3.27
3362 3917 8.648557 AATTTCTTACCAGAAGAAAGCAAAAC 57.351 30.769 15.43 0.00 45.85 2.43
3570 8117 4.636206 GCCGAATTCTACTCAAAACCTCAT 59.364 41.667 3.52 0.00 0.00 2.90
3880 8431 1.135575 GCAATGCCGAAGTCTCCAAAG 60.136 52.381 0.00 0.00 0.00 2.77
3883 8434 0.250684 TTGCAATGCCGAAGTCTCCA 60.251 50.000 1.53 0.00 0.00 3.86
3923 8475 1.137872 CAGCCCAGTTGAGGTAGCTAG 59.862 57.143 0.00 0.00 0.00 3.42
3959 8511 9.301897 TGCTATATATATACCTGGAGCTATGTG 57.698 37.037 0.00 0.00 0.00 3.21
3992 8544 4.933400 AGATGGCAATCAAAATGAAAGTGC 59.067 37.500 3.34 5.82 35.03 4.40
3993 8545 5.929992 ACAGATGGCAATCAAAATGAAAGTG 59.070 36.000 3.34 0.00 35.03 3.16
3994 8546 6.105397 ACAGATGGCAATCAAAATGAAAGT 57.895 33.333 3.34 0.00 35.03 2.66
3995 8547 8.712285 ATAACAGATGGCAATCAAAATGAAAG 57.288 30.769 3.34 0.00 35.03 2.62
3999 8551 7.148390 TGCAAATAACAGATGGCAATCAAAATG 60.148 33.333 3.34 0.00 35.03 2.32
4000 8552 6.879993 TGCAAATAACAGATGGCAATCAAAAT 59.120 30.769 3.34 0.00 35.03 1.82
4080 8633 1.027357 CCTTGCCGCTTTGAGCATAT 58.973 50.000 0.50 0.00 42.58 1.78
4096 8649 1.002069 TCCCCACAGATTGATGCCTT 58.998 50.000 0.00 0.00 0.00 4.35
4131 8684 8.243426 CCAATGAGCATCTCTAAGAGTACTATC 58.757 40.741 0.00 0.00 34.92 2.08
4288 8841 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
4289 8842 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
4290 8843 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
4291 8844 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
4292 8845 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
4293 8846 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
4294 8847 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
4295 8848 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
4296 8849 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
4297 8850 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
4298 8851 9.071276 TGTACTCCCTCCGTAAACTAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
4299 8852 8.995027 TGTACTCCCTCCGTAAACTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
4301 8854 9.765295 ATATGTACTCCCTCCGTAAACTAATAT 57.235 33.333 0.00 0.00 0.00 1.28
4302 8855 9.592196 AATATGTACTCCCTCCGTAAACTAATA 57.408 33.333 0.00 0.00 0.00 0.98
4303 8856 8.488308 AATATGTACTCCCTCCGTAAACTAAT 57.512 34.615 0.00 0.00 0.00 1.73
4304 8857 7.902920 AATATGTACTCCCTCCGTAAACTAA 57.097 36.000 0.00 0.00 0.00 2.24
4305 8858 9.592196 AATAATATGTACTCCCTCCGTAAACTA 57.408 33.333 0.00 0.00 0.00 2.24
4306 8859 8.365647 CAATAATATGTACTCCCTCCGTAAACT 58.634 37.037 0.00 0.00 0.00 2.66
4307 8860 8.362639 TCAATAATATGTACTCCCTCCGTAAAC 58.637 37.037 0.00 0.00 0.00 2.01
4308 8861 8.481492 TCAATAATATGTACTCCCTCCGTAAA 57.519 34.615 0.00 0.00 0.00 2.01
4309 8862 8.528643 CATCAATAATATGTACTCCCTCCGTAA 58.471 37.037 0.00 0.00 0.00 3.18
4310 8863 7.363530 GCATCAATAATATGTACTCCCTCCGTA 60.364 40.741 0.00 0.00 0.00 4.02
4311 8864 6.574465 GCATCAATAATATGTACTCCCTCCGT 60.574 42.308 0.00 0.00 0.00 4.69
4312 8865 5.812642 GCATCAATAATATGTACTCCCTCCG 59.187 44.000 0.00 0.00 0.00 4.63
4313 8866 6.595716 GTGCATCAATAATATGTACTCCCTCC 59.404 42.308 0.00 0.00 37.10 4.30
4314 8867 6.311445 CGTGCATCAATAATATGTACTCCCTC 59.689 42.308 0.00 0.00 37.68 4.30
4315 8868 6.166279 CGTGCATCAATAATATGTACTCCCT 58.834 40.000 0.00 0.00 37.68 4.20
4316 8869 5.932303 ACGTGCATCAATAATATGTACTCCC 59.068 40.000 0.00 0.00 37.68 4.30
4317 8870 6.868864 AGACGTGCATCAATAATATGTACTCC 59.131 38.462 0.00 0.00 37.68 3.85
4318 8871 7.062371 GGAGACGTGCATCAATAATATGTACTC 59.938 40.741 0.00 0.00 37.68 2.59
4319 8872 6.868864 GGAGACGTGCATCAATAATATGTACT 59.131 38.462 0.00 0.00 37.68 2.73
4320 8873 6.645003 TGGAGACGTGCATCAATAATATGTAC 59.355 38.462 0.00 0.00 36.82 2.90
4321 8874 6.754193 TGGAGACGTGCATCAATAATATGTA 58.246 36.000 0.00 0.00 0.00 2.29
4322 8875 5.610398 TGGAGACGTGCATCAATAATATGT 58.390 37.500 0.00 0.00 0.00 2.29
4323 8876 6.402875 CCATGGAGACGTGCATCAATAATATG 60.403 42.308 5.56 0.00 46.34 1.78
4324 8877 5.645067 CCATGGAGACGTGCATCAATAATAT 59.355 40.000 5.56 0.00 46.34 1.28
4325 8878 4.996758 CCATGGAGACGTGCATCAATAATA 59.003 41.667 5.56 0.00 46.34 0.98
4326 8879 3.817084 CCATGGAGACGTGCATCAATAAT 59.183 43.478 5.56 0.00 46.34 1.28
4327 8880 3.205338 CCATGGAGACGTGCATCAATAA 58.795 45.455 5.56 0.00 46.34 1.40
4328 8881 2.485302 CCCATGGAGACGTGCATCAATA 60.485 50.000 15.22 0.00 46.34 1.90
4329 8882 1.671979 CCATGGAGACGTGCATCAAT 58.328 50.000 5.56 0.00 46.34 2.57
4330 8883 0.392863 CCCATGGAGACGTGCATCAA 60.393 55.000 15.22 0.00 46.34 2.57
4331 8884 1.221566 CCCATGGAGACGTGCATCA 59.778 57.895 15.22 0.00 46.34 3.07
4332 8885 1.524621 CCCCATGGAGACGTGCATC 60.525 63.158 15.22 0.00 46.34 3.91
4635 9196 2.204090 GGGAGGACAGGGGGAACA 60.204 66.667 0.00 0.00 0.00 3.18
4645 9208 3.169242 GGGGAATCGGGGGAGGAC 61.169 72.222 0.00 0.00 0.00 3.85
4751 9348 2.024305 CGTCGGCGAGCTACGAAT 59.976 61.111 11.20 0.00 45.77 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.