Multiple sequence alignment - TraesCS3B01G043000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G043000 chr3B 100.000 3302 0 0 1 3302 22170378 22173679 0.000000e+00 6098
1 TraesCS3B01G043000 chr3B 82.621 1030 139 25 1346 2355 22179744 22180753 0.000000e+00 874
2 TraesCS3B01G043000 chr3B 87.868 544 44 8 2573 3102 22180759 22181294 1.300000e-173 619
3 TraesCS3B01G043000 chr3B 84.375 576 81 7 1348 1921 22199118 22198550 1.040000e-154 556
4 TraesCS3B01G043000 chr3B 83.540 322 47 5 952 1268 22179400 22179720 2.490000e-76 296
5 TraesCS3B01G043000 chr3B 89.091 220 22 2 19 238 637032448 637032665 4.200000e-69 272
6 TraesCS3B01G043000 chr3B 84.181 177 22 5 1352 1526 22165116 22165288 2.040000e-37 167
7 TraesCS3B01G043000 chr3D 89.427 2147 196 16 973 3102 15155548 15157680 0.000000e+00 2678
8 TraesCS3B01G043000 chr3D 85.606 924 124 3 1463 2380 15209484 15208564 0.000000e+00 961
9 TraesCS3B01G043000 chr3D 83.691 1024 130 20 1352 2355 15201432 15202438 0.000000e+00 931
10 TraesCS3B01G043000 chr3D 86.608 799 101 5 1632 2426 15218594 15217798 0.000000e+00 878
11 TraesCS3B01G043000 chr3D 84.799 796 116 4 1632 2425 15101518 15102310 0.000000e+00 795
12 TraesCS3B01G043000 chr3D 87.212 477 38 18 2573 3046 15202444 15202900 3.780000e-144 521
13 TraesCS3B01G043000 chr3D 77.983 595 83 30 1352 1913 15123543 15124122 2.460000e-86 329
14 TraesCS3B01G043000 chr3D 82.749 371 54 7 939 1299 15123178 15123548 4.110000e-84 322
15 TraesCS3B01G043000 chr3D 87.500 272 34 0 997 1268 15201134 15201405 6.880000e-82 315
16 TraesCS3B01G043000 chr3D 82.085 307 42 11 973 1269 15100935 15101238 1.970000e-62 250
17 TraesCS3B01G043000 chr3D 86.111 108 13 1 643 748 15154179 15154286 7.490000e-22 115
18 TraesCS3B01G043000 chr3A 84.902 1689 200 31 768 2425 21268713 21267049 0.000000e+00 1655
19 TraesCS3B01G043000 chr3A 83.585 1322 175 31 1045 2339 21314501 21313195 0.000000e+00 1201
20 TraesCS3B01G043000 chr3A 83.611 1080 136 26 1358 2425 21176772 21177822 0.000000e+00 976
21 TraesCS3B01G043000 chr3A 82.875 1092 156 21 1357 2422 21168973 21170059 0.000000e+00 952
22 TraesCS3B01G043000 chr3A 86.713 286 38 0 987 1272 21148380 21148665 5.320000e-83 318
23 TraesCS3B01G043000 chr3A 85.667 300 39 4 256 551 21272924 21272625 2.470000e-81 313
24 TraesCS3B01G043000 chr3A 82.275 378 49 14 937 1299 21278030 21277656 8.900000e-81 311
25 TraesCS3B01G043000 chr3A 78.166 458 62 25 256 683 21175728 21176177 1.180000e-64 257
26 TraesCS3B01G043000 chr3A 93.846 65 4 0 617 681 21272277 21272213 7.540000e-17 99
27 TraesCS3B01G043000 chr1A 91.204 216 18 1 23 238 124323012 124323226 3.220000e-75 292
28 TraesCS3B01G043000 chr6B 89.868 227 20 3 19 242 712628307 712628533 4.170000e-74 289
29 TraesCS3B01G043000 chr5B 90.411 219 20 1 20 238 419298649 419298432 1.500000e-73 287
30 TraesCS3B01G043000 chr2A 89.862 217 21 1 23 239 11010580 11010365 9.020000e-71 278
31 TraesCS3B01G043000 chr2A 88.285 239 19 4 19 249 683734043 683733806 9.020000e-71 278
32 TraesCS3B01G043000 chr2D 91.371 197 17 0 43 239 478108851 478109047 1.510000e-68 270
33 TraesCS3B01G043000 chr4B 87.892 223 25 2 19 239 545062052 545061830 9.090000e-66 261
34 TraesCS3B01G043000 chr2B 86.878 221 27 2 19 237 175452741 175452961 2.540000e-61 246
35 TraesCS3B01G043000 chr1D 77.113 485 67 31 242 689 46361908 46361431 1.180000e-59 241
36 TraesCS3B01G043000 chr1B 75.532 376 46 34 277 615 65703402 65703768 3.430000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G043000 chr3B 22170378 22173679 3301 False 6098.000000 6098 100.000000 1 3302 1 chr3B.!!$F2 3301
1 TraesCS3B01G043000 chr3B 22179400 22181294 1894 False 596.333333 874 84.676333 952 3102 3 chr3B.!!$F4 2150
2 TraesCS3B01G043000 chr3B 22198550 22199118 568 True 556.000000 556 84.375000 1348 1921 1 chr3B.!!$R1 573
3 TraesCS3B01G043000 chr3D 15154179 15157680 3501 False 1396.500000 2678 87.769000 643 3102 2 chr3D.!!$F3 2459
4 TraesCS3B01G043000 chr3D 15208564 15209484 920 True 961.000000 961 85.606000 1463 2380 1 chr3D.!!$R1 917
5 TraesCS3B01G043000 chr3D 15217798 15218594 796 True 878.000000 878 86.608000 1632 2426 1 chr3D.!!$R2 794
6 TraesCS3B01G043000 chr3D 15201134 15202900 1766 False 589.000000 931 86.134333 997 3046 3 chr3D.!!$F4 2049
7 TraesCS3B01G043000 chr3D 15100935 15102310 1375 False 522.500000 795 83.442000 973 2425 2 chr3D.!!$F1 1452
8 TraesCS3B01G043000 chr3D 15123178 15124122 944 False 325.500000 329 80.366000 939 1913 2 chr3D.!!$F2 974
9 TraesCS3B01G043000 chr3A 21313195 21314501 1306 True 1201.000000 1201 83.585000 1045 2339 1 chr3A.!!$R2 1294
10 TraesCS3B01G043000 chr3A 21168973 21170059 1086 False 952.000000 952 82.875000 1357 2422 1 chr3A.!!$F2 1065
11 TraesCS3B01G043000 chr3A 21267049 21272924 5875 True 689.000000 1655 88.138333 256 2425 3 chr3A.!!$R3 2169
12 TraesCS3B01G043000 chr3A 21175728 21177822 2094 False 616.500000 976 80.888500 256 2425 2 chr3A.!!$F3 2169

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
756 4442 0.107831 AACTTGCGGTCTGGCAGTTA 59.892 50.0 15.27 0.0 44.94 2.24 F
757 4443 0.324943 ACTTGCGGTCTGGCAGTTAT 59.675 50.0 15.27 0.0 44.94 1.89 F
969 5736 0.469892 ATCCCCAATTCCAATCGGCC 60.470 55.0 0.00 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1702 6630 0.040058 TGCCAATGATTGACCCAGCT 59.960 50.0 6.76 0.0 0.0 4.24 R
2052 6981 0.539986 TCTTGCCACCCGATACCTTC 59.460 55.0 0.00 0.0 0.0 3.46 R
2619 7551 1.251251 GCAACCTTGAGCAATGTCCT 58.749 50.0 0.00 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.700365 CCGCTGCTCGTCACGACA 62.700 66.667 0.00 0.00 36.19 4.35
22 23 2.729491 CGCTGCTCGTCACGACAA 60.729 61.111 0.00 0.00 0.00 3.18
23 24 2.846918 GCTGCTCGTCACGACAAC 59.153 61.111 0.00 0.00 0.00 3.32
24 25 1.949133 GCTGCTCGTCACGACAACA 60.949 57.895 0.00 0.00 0.00 3.33
25 26 1.487452 GCTGCTCGTCACGACAACAA 61.487 55.000 0.00 0.00 0.00 2.83
26 27 0.229753 CTGCTCGTCACGACAACAAC 59.770 55.000 0.00 0.00 0.00 3.32
27 28 0.458716 TGCTCGTCACGACAACAACA 60.459 50.000 0.00 0.00 0.00 3.33
28 29 0.648441 GCTCGTCACGACAACAACAA 59.352 50.000 0.00 0.00 0.00 2.83
29 30 1.591394 GCTCGTCACGACAACAACAAC 60.591 52.381 0.00 0.00 0.00 3.32
30 31 1.924524 CTCGTCACGACAACAACAACT 59.075 47.619 0.00 0.00 0.00 3.16
31 32 1.656594 TCGTCACGACAACAACAACTG 59.343 47.619 0.00 0.00 0.00 3.16
32 33 1.656594 CGTCACGACAACAACAACTGA 59.343 47.619 0.00 0.00 0.00 3.41
33 34 2.284150 CGTCACGACAACAACAACTGAT 59.716 45.455 0.00 0.00 0.00 2.90
34 35 3.607439 GTCACGACAACAACAACTGATG 58.393 45.455 0.00 0.00 34.11 3.07
35 36 2.611751 TCACGACAACAACAACTGATGG 59.388 45.455 0.00 0.00 32.23 3.51
36 37 1.946768 ACGACAACAACAACTGATGGG 59.053 47.619 0.00 0.00 32.23 4.00
37 38 1.266718 CGACAACAACAACTGATGGGG 59.733 52.381 0.00 0.00 32.23 4.96
38 39 2.306847 GACAACAACAACTGATGGGGT 58.693 47.619 0.00 0.00 32.23 4.95
39 40 3.482436 GACAACAACAACTGATGGGGTA 58.518 45.455 0.00 0.00 32.23 3.69
40 41 3.886505 GACAACAACAACTGATGGGGTAA 59.113 43.478 0.00 0.00 32.23 2.85
41 42 4.282496 ACAACAACAACTGATGGGGTAAA 58.718 39.130 0.00 0.00 32.23 2.01
42 43 4.898861 ACAACAACAACTGATGGGGTAAAT 59.101 37.500 0.00 0.00 32.23 1.40
43 44 6.071984 ACAACAACAACTGATGGGGTAAATA 58.928 36.000 0.00 0.00 32.23 1.40
44 45 6.015772 ACAACAACAACTGATGGGGTAAATAC 60.016 38.462 0.00 0.00 32.23 1.89
45 46 5.887754 ACAACAACTGATGGGGTAAATACT 58.112 37.500 0.00 0.00 0.00 2.12
46 47 6.311735 ACAACAACTGATGGGGTAAATACTT 58.688 36.000 0.00 0.00 0.00 2.24
47 48 6.780522 ACAACAACTGATGGGGTAAATACTTT 59.219 34.615 0.00 0.00 0.00 2.66
48 49 7.289084 ACAACAACTGATGGGGTAAATACTTTT 59.711 33.333 0.00 0.00 0.00 2.27
49 50 7.849322 ACAACTGATGGGGTAAATACTTTTT 57.151 32.000 0.00 0.00 0.00 1.94
50 51 7.892609 ACAACTGATGGGGTAAATACTTTTTC 58.107 34.615 0.00 0.00 0.00 2.29
51 52 6.753107 ACTGATGGGGTAAATACTTTTTCG 57.247 37.500 0.00 0.00 0.00 3.46
52 53 6.478129 ACTGATGGGGTAAATACTTTTTCGA 58.522 36.000 0.00 0.00 0.00 3.71
53 54 6.943718 ACTGATGGGGTAAATACTTTTTCGAA 59.056 34.615 0.00 0.00 0.00 3.71
54 55 7.094506 ACTGATGGGGTAAATACTTTTTCGAAC 60.095 37.037 0.00 0.00 0.00 3.95
55 56 5.963176 TGGGGTAAATACTTTTTCGAACC 57.037 39.130 0.00 0.00 0.00 3.62
56 57 5.383476 TGGGGTAAATACTTTTTCGAACCA 58.617 37.500 0.00 0.00 0.00 3.67
57 58 5.832060 TGGGGTAAATACTTTTTCGAACCAA 59.168 36.000 0.00 0.00 0.00 3.67
58 59 6.323225 TGGGGTAAATACTTTTTCGAACCAAA 59.677 34.615 0.00 0.00 0.00 3.28
59 60 7.015389 TGGGGTAAATACTTTTTCGAACCAAAT 59.985 33.333 0.00 0.00 0.00 2.32
60 61 7.329962 GGGGTAAATACTTTTTCGAACCAAATG 59.670 37.037 0.00 0.00 0.00 2.32
61 62 7.148705 GGGTAAATACTTTTTCGAACCAAATGC 60.149 37.037 0.00 0.00 0.00 3.56
62 63 7.597369 GGTAAATACTTTTTCGAACCAAATGCT 59.403 33.333 0.00 0.00 0.00 3.79
63 64 8.974408 GTAAATACTTTTTCGAACCAAATGCTT 58.026 29.630 0.00 0.00 0.00 3.91
64 65 7.637709 AATACTTTTTCGAACCAAATGCTTC 57.362 32.000 0.00 0.00 0.00 3.86
65 66 5.004922 ACTTTTTCGAACCAAATGCTTCA 57.995 34.783 0.00 0.00 0.00 3.02
66 67 5.415221 ACTTTTTCGAACCAAATGCTTCAA 58.585 33.333 0.00 0.00 0.00 2.69
67 68 5.290885 ACTTTTTCGAACCAAATGCTTCAAC 59.709 36.000 0.00 0.00 0.00 3.18
68 69 4.647424 TTTCGAACCAAATGCTTCAACT 57.353 36.364 0.00 0.00 0.00 3.16
69 70 3.896648 TCGAACCAAATGCTTCAACTC 57.103 42.857 0.00 0.00 0.00 3.01
70 71 2.552315 TCGAACCAAATGCTTCAACTCC 59.448 45.455 0.00 0.00 0.00 3.85
71 72 2.293122 CGAACCAAATGCTTCAACTCCA 59.707 45.455 0.00 0.00 0.00 3.86
72 73 3.243367 CGAACCAAATGCTTCAACTCCAA 60.243 43.478 0.00 0.00 0.00 3.53
73 74 4.301628 GAACCAAATGCTTCAACTCCAAG 58.698 43.478 0.00 0.00 0.00 3.61
74 75 3.299503 ACCAAATGCTTCAACTCCAAGT 58.700 40.909 0.00 0.00 0.00 3.16
75 76 3.706086 ACCAAATGCTTCAACTCCAAGTT 59.294 39.130 0.00 0.00 39.39 2.66
76 77 4.202151 ACCAAATGCTTCAACTCCAAGTTC 60.202 41.667 0.00 0.00 36.03 3.01
77 78 4.301628 CAAATGCTTCAACTCCAAGTTCC 58.698 43.478 0.00 0.00 36.03 3.62
78 79 2.727123 TGCTTCAACTCCAAGTTCCA 57.273 45.000 0.00 0.00 36.03 3.53
79 80 3.011566 TGCTTCAACTCCAAGTTCCAA 57.988 42.857 0.00 0.00 36.03 3.53
80 81 2.687935 TGCTTCAACTCCAAGTTCCAAC 59.312 45.455 0.00 0.00 36.03 3.77
81 82 2.687935 GCTTCAACTCCAAGTTCCAACA 59.312 45.455 0.00 0.00 36.03 3.33
82 83 3.243201 GCTTCAACTCCAAGTTCCAACAG 60.243 47.826 0.00 0.00 36.03 3.16
83 84 3.644966 TCAACTCCAAGTTCCAACAGT 57.355 42.857 0.00 0.00 36.03 3.55
84 85 3.963129 TCAACTCCAAGTTCCAACAGTT 58.037 40.909 0.00 0.00 36.03 3.16
85 86 4.340617 TCAACTCCAAGTTCCAACAGTTT 58.659 39.130 0.00 0.00 36.03 2.66
86 87 4.157656 TCAACTCCAAGTTCCAACAGTTTG 59.842 41.667 0.00 0.00 36.03 2.93
87 88 3.697166 ACTCCAAGTTCCAACAGTTTGT 58.303 40.909 0.00 0.00 0.00 2.83
88 89 4.086457 ACTCCAAGTTCCAACAGTTTGTT 58.914 39.130 0.00 0.00 42.08 2.83
89 90 5.566627 AACTCCAAGTTCCAACAGTTTGTTG 60.567 40.000 13.53 13.53 42.03 3.33
90 91 7.696220 AACTCCAAGTTCCAACAGTTTGTTGA 61.696 38.462 20.25 6.72 46.38 3.18
91 92 9.393768 AACTCCAAGTTCCAACAGTTTGTTGAG 62.394 40.741 20.25 11.91 46.38 3.02
205 206 8.712341 TCTTTTACGTAAAATAGTTTTTCGCC 57.288 30.769 28.42 0.00 44.00 5.54
206 207 7.802720 TCTTTTACGTAAAATAGTTTTTCGCCC 59.197 33.333 28.42 0.00 44.00 6.13
207 208 4.424061 ACGTAAAATAGTTTTTCGCCCC 57.576 40.909 12.07 0.00 44.00 5.80
208 209 3.191162 ACGTAAAATAGTTTTTCGCCCCC 59.809 43.478 12.07 0.00 44.00 5.40
226 227 3.299503 CCCCCTCATGTTTAAATCCTGG 58.700 50.000 0.00 0.00 0.00 4.45
227 228 2.695147 CCCCTCATGTTTAAATCCTGGC 59.305 50.000 0.00 0.00 0.00 4.85
228 229 3.628257 CCCCTCATGTTTAAATCCTGGCT 60.628 47.826 0.00 0.00 0.00 4.75
229 230 3.633986 CCCTCATGTTTAAATCCTGGCTC 59.366 47.826 0.00 0.00 0.00 4.70
230 231 3.633986 CCTCATGTTTAAATCCTGGCTCC 59.366 47.826 0.00 0.00 0.00 4.70
231 232 3.278574 TCATGTTTAAATCCTGGCTCCG 58.721 45.455 0.00 0.00 0.00 4.63
232 233 1.459450 TGTTTAAATCCTGGCTCCGC 58.541 50.000 0.00 0.00 0.00 5.54
243 244 4.175337 GCTCCGCCCCTGCATGTA 62.175 66.667 0.00 0.00 37.32 2.29
244 245 2.109799 CTCCGCCCCTGCATGTAG 59.890 66.667 3.45 3.45 37.32 2.74
245 246 2.364973 TCCGCCCCTGCATGTAGA 60.365 61.111 12.93 0.00 37.32 2.59
246 247 2.109799 CCGCCCCTGCATGTAGAG 59.890 66.667 12.93 0.00 37.32 2.43
247 248 2.109799 CGCCCCTGCATGTAGAGG 59.890 66.667 12.93 9.90 37.32 3.69
248 249 2.735772 CGCCCCTGCATGTAGAGGT 61.736 63.158 12.93 0.00 37.32 3.85
249 250 1.609783 GCCCCTGCATGTAGAGGTT 59.390 57.895 12.93 0.00 37.47 3.50
250 251 0.464554 GCCCCTGCATGTAGAGGTTC 60.465 60.000 12.93 2.99 37.47 3.62
251 252 0.911769 CCCCTGCATGTAGAGGTTCA 59.088 55.000 12.93 0.00 0.00 3.18
252 253 1.492176 CCCCTGCATGTAGAGGTTCAT 59.508 52.381 12.93 0.00 0.00 2.57
253 254 2.486191 CCCCTGCATGTAGAGGTTCATC 60.486 54.545 12.93 0.00 0.00 2.92
254 255 2.477825 CCTGCATGTAGAGGTTCATCG 58.522 52.381 12.93 0.00 0.00 3.84
274 275 3.391382 CCTCCCACTCGGACACCC 61.391 72.222 0.00 0.00 34.86 4.61
275 276 3.391382 CTCCCACTCGGACACCCC 61.391 72.222 0.00 0.00 34.86 4.95
300 301 3.462678 GGACGAGGAGGAGGGTGC 61.463 72.222 0.00 0.00 0.00 5.01
306 307 4.554036 GGAGGAGGGTGCCATCGC 62.554 72.222 0.00 0.00 0.00 4.58
328 330 1.302511 GGAAGTTGAGGCTCGCCAA 60.303 57.895 10.42 0.00 38.92 4.52
355 357 1.266718 GCTGCCTTCATTGTTGTCGAA 59.733 47.619 0.00 0.00 0.00 3.71
381 384 4.343231 TCTTTGGCAAAGATGAGGCATTA 58.657 39.130 32.85 11.78 42.31 1.90
430 435 5.098211 GCTGAATCTTTGCCTTACATTGTC 58.902 41.667 0.00 0.00 0.00 3.18
438 443 3.581755 TGCCTTACATTGTCGACAGTAC 58.418 45.455 19.11 7.55 0.00 2.73
452 457 1.169577 CAGTACCTGAGCTCGTGACT 58.830 55.000 9.64 6.88 32.44 3.41
457 462 1.287730 CCTGAGCTCGTGACTGCAAC 61.288 60.000 9.64 0.00 0.00 4.17
466 471 0.944386 GTGACTGCAACGTTCATGGT 59.056 50.000 0.00 0.00 0.00 3.55
473 478 0.606401 CAACGTTCATGGTCCTGCCT 60.606 55.000 0.00 0.00 38.35 4.75
485 490 1.896465 GTCCTGCCTGTTAGTGTCTCT 59.104 52.381 0.00 0.00 0.00 3.10
490 495 3.441101 TGCCTGTTAGTGTCTCTACCAT 58.559 45.455 0.00 0.00 0.00 3.55
494 499 5.302059 GCCTGTTAGTGTCTCTACCATATGA 59.698 44.000 3.65 0.00 0.00 2.15
526 531 4.115199 ATGGAGCGGGTGAAGGCC 62.115 66.667 0.00 0.00 0.00 5.19
535 540 1.227002 GGTGAAGGCCGAGATCGAC 60.227 63.158 3.31 0.00 43.02 4.20
559 588 1.019673 GATCCACTGTAGCCGTCGTA 58.980 55.000 0.00 0.00 0.00 3.43
572 601 3.449227 TCGTACAGCTGCTCCCCG 61.449 66.667 15.27 9.08 0.00 5.73
573 602 4.514577 CGTACAGCTGCTCCCCGG 62.515 72.222 15.27 0.00 0.00 5.73
606 635 1.140452 GCTGCTGATCCTGGATCTTCA 59.860 52.381 30.97 25.61 39.56 3.02
615 645 1.815003 CCTGGATCTTCACCTTGCAAC 59.185 52.381 0.00 0.00 0.00 4.17
631 919 4.041740 TGCAACGTAGATGGTATCTGAC 57.958 45.455 1.71 0.00 40.51 3.51
636 924 3.752222 ACGTAGATGGTATCTGACGGATC 59.248 47.826 0.00 0.00 40.51 3.36
689 4373 7.063426 TGAGAGTGCTTACAAAAATCTGTATCG 59.937 37.037 0.00 0.00 31.96 2.92
694 4378 6.128391 TGCTTACAAAAATCTGTATCGTGGAC 60.128 38.462 0.00 0.00 31.96 4.02
696 4380 7.277098 GCTTACAAAAATCTGTATCGTGGACTA 59.723 37.037 0.00 0.00 31.96 2.59
697 4381 9.146984 CTTACAAAAATCTGTATCGTGGACTAA 57.853 33.333 0.00 0.00 31.96 2.24
698 4382 7.972832 ACAAAAATCTGTATCGTGGACTAAA 57.027 32.000 0.00 0.00 0.00 1.85
700 4384 9.010029 ACAAAAATCTGTATCGTGGACTAAAAT 57.990 29.630 0.00 0.00 0.00 1.82
702 4386 7.464830 AAATCTGTATCGTGGACTAAAATCG 57.535 36.000 0.00 0.00 0.00 3.34
704 4388 4.097437 TCTGTATCGTGGACTAAAATCGCT 59.903 41.667 0.00 0.00 0.00 4.93
711 4397 3.500680 GTGGACTAAAATCGCTGGACAAA 59.499 43.478 0.00 0.00 0.00 2.83
727 4413 4.065789 GGACAAACTTCACACCTAAGGAG 58.934 47.826 0.00 0.00 0.00 3.69
748 4434 0.109226 GCTACGAGAACTTGCGGTCT 60.109 55.000 0.00 0.00 0.00 3.85
750 4436 0.242825 TACGAGAACTTGCGGTCTGG 59.757 55.000 0.00 0.00 0.00 3.86
752 4438 1.301716 GAGAACTTGCGGTCTGGCA 60.302 57.895 0.00 0.00 42.12 4.92
754 4440 1.598130 GAACTTGCGGTCTGGCAGT 60.598 57.895 15.27 0.00 44.94 4.40
755 4441 1.152963 AACTTGCGGTCTGGCAGTT 60.153 52.632 15.27 0.00 44.94 3.16
756 4442 0.107831 AACTTGCGGTCTGGCAGTTA 59.892 50.000 15.27 0.00 44.94 2.24
757 4443 0.324943 ACTTGCGGTCTGGCAGTTAT 59.675 50.000 15.27 0.00 44.94 1.89
759 4445 2.170607 ACTTGCGGTCTGGCAGTTATAT 59.829 45.455 15.27 0.00 44.94 0.86
760 4446 3.206150 CTTGCGGTCTGGCAGTTATATT 58.794 45.455 15.27 0.00 44.94 1.28
762 4448 2.434336 TGCGGTCTGGCAGTTATATTCT 59.566 45.455 15.27 0.00 38.17 2.40
763 4449 3.118408 TGCGGTCTGGCAGTTATATTCTT 60.118 43.478 15.27 0.00 38.17 2.52
764 4450 3.248602 GCGGTCTGGCAGTTATATTCTTG 59.751 47.826 15.27 0.00 0.00 3.02
811 4512 3.824443 TGACTCCGAACATGACTCACTAA 59.176 43.478 0.00 0.00 0.00 2.24
888 5652 4.614284 CGTACACGTCGCCCTAAAATATAG 59.386 45.833 0.00 0.00 34.11 1.31
889 5653 3.387397 ACACGTCGCCCTAAAATATAGC 58.613 45.455 0.00 0.00 0.00 2.97
890 5654 3.069158 ACACGTCGCCCTAAAATATAGCT 59.931 43.478 0.00 0.00 0.00 3.32
891 5655 4.279169 ACACGTCGCCCTAAAATATAGCTA 59.721 41.667 0.00 0.00 0.00 3.32
893 5657 3.858238 CGTCGCCCTAAAATATAGCTAGC 59.142 47.826 6.62 6.62 0.00 3.42
895 5659 3.835978 TCGCCCTAAAATATAGCTAGCCA 59.164 43.478 12.13 0.00 0.00 4.75
899 5663 4.518249 CCTAAAATATAGCTAGCCAGGGC 58.482 47.826 12.13 0.97 42.33 5.19
935 5699 3.701532 TCAATTGTCACGAACCAAACC 57.298 42.857 5.13 0.00 0.00 3.27
961 5728 2.814336 GTCGCTATCAATCCCCAATTCC 59.186 50.000 0.00 0.00 0.00 3.01
962 5729 2.441375 TCGCTATCAATCCCCAATTCCA 59.559 45.455 0.00 0.00 0.00 3.53
963 5730 3.117701 TCGCTATCAATCCCCAATTCCAA 60.118 43.478 0.00 0.00 0.00 3.53
964 5731 3.828451 CGCTATCAATCCCCAATTCCAAT 59.172 43.478 0.00 0.00 0.00 3.16
965 5732 4.082571 CGCTATCAATCCCCAATTCCAATC 60.083 45.833 0.00 0.00 0.00 2.67
966 5733 4.082571 GCTATCAATCCCCAATTCCAATCG 60.083 45.833 0.00 0.00 0.00 3.34
967 5734 2.665165 TCAATCCCCAATTCCAATCGG 58.335 47.619 0.00 0.00 0.00 4.18
968 5735 1.069049 CAATCCCCAATTCCAATCGGC 59.931 52.381 0.00 0.00 0.00 5.54
969 5736 0.469892 ATCCCCAATTCCAATCGGCC 60.470 55.000 0.00 0.00 0.00 6.13
970 5737 2.489275 CCCCAATTCCAATCGGCCG 61.489 63.158 22.12 22.12 0.00 6.13
971 5738 2.489275 CCCAATTCCAATCGGCCGG 61.489 63.158 27.83 9.38 0.00 6.13
1155 5963 1.048601 TCAAGGTGACCTTCGAGCTT 58.951 50.000 15.20 0.00 42.67 3.74
1203 6017 4.416738 GTCCACTGCCCCAGCCTC 62.417 72.222 0.00 0.00 38.69 4.70
1245 6059 0.616111 ATCCCGTGGTTCTGAGCTCT 60.616 55.000 16.19 0.00 0.00 4.09
1250 6064 2.125350 GGTTCTGAGCTCTGCGGG 60.125 66.667 16.19 0.44 0.00 6.13
1269 6083 1.228657 GCGCCTTTGTCCTTCTCGTT 61.229 55.000 0.00 0.00 0.00 3.85
1272 6086 2.762745 GCCTTTGTCCTTCTCGTTGTA 58.237 47.619 0.00 0.00 0.00 2.41
1273 6087 3.135994 GCCTTTGTCCTTCTCGTTGTAA 58.864 45.455 0.00 0.00 0.00 2.41
1275 6089 4.377897 CCTTTGTCCTTCTCGTTGTAACT 58.622 43.478 0.00 0.00 0.00 2.24
1280 6094 5.421277 TGTCCTTCTCGTTGTAACTTTCAA 58.579 37.500 0.00 0.00 0.00 2.69
1281 6095 5.522460 TGTCCTTCTCGTTGTAACTTTCAAG 59.478 40.000 0.00 0.00 0.00 3.02
1315 6129 2.750657 GGTCCAGGGGCTCCATCTG 61.751 68.421 4.79 0.00 34.83 2.90
1344 6158 1.276421 AGATCCCGTGGTTCTCAGTTG 59.724 52.381 0.00 0.00 26.41 3.16
1395 6266 1.613630 CTACAGGGCAGGTCCAGGT 60.614 63.158 0.00 0.00 36.21 4.00
1419 6296 0.758685 CATCTCTCCGCCTTCTCCCT 60.759 60.000 0.00 0.00 0.00 4.20
1438 6327 3.866582 GCATCGGCCCCTACTGCT 61.867 66.667 0.00 0.00 0.00 4.24
1439 6328 2.109799 CATCGGCCCCTACTGCTG 59.890 66.667 0.00 0.00 36.41 4.41
1440 6329 2.365635 ATCGGCCCCTACTGCTGT 60.366 61.111 0.00 0.66 36.47 4.40
1446 6335 1.762460 CCCCTACTGCTGTCCCGAT 60.762 63.158 0.00 0.00 0.00 4.18
1447 6336 1.443407 CCCTACTGCTGTCCCGATG 59.557 63.158 0.00 0.00 0.00 3.84
1448 6337 1.330655 CCCTACTGCTGTCCCGATGT 61.331 60.000 0.00 0.00 0.00 3.06
1449 6338 1.399714 CCTACTGCTGTCCCGATGTA 58.600 55.000 0.00 0.00 0.00 2.29
1455 6344 0.818296 GCTGTCCCGATGTAGTCACT 59.182 55.000 0.00 0.00 0.00 3.41
1509 6398 2.135139 CTCAACAGCAAAGACTACGCA 58.865 47.619 0.00 0.00 0.00 5.24
1529 6418 1.633945 AGTGGTTTTCCCCTCGCTATT 59.366 47.619 0.00 0.00 39.73 1.73
1534 6423 4.460034 TGGTTTTCCCCTCGCTATTAAAAC 59.540 41.667 0.00 0.00 39.73 2.43
1539 6428 2.949644 CCCCTCGCTATTAAAACCTTGG 59.050 50.000 0.00 0.00 0.00 3.61
1546 6435 3.125658 GCTATTAAAACCTTGGTCGCGAA 59.874 43.478 12.06 0.00 0.00 4.70
1563 6452 2.734670 CGAAACACCAACGACTCTACA 58.265 47.619 0.00 0.00 0.00 2.74
1586 6490 3.884091 GAGTACATCCTCCACGTGTATCT 59.116 47.826 15.65 0.00 31.71 1.98
1606 6510 4.919793 TCTATCGGATACCTCTAAGTGGG 58.080 47.826 0.00 0.00 0.00 4.61
1671 6599 0.605050 TAATGCAGCACGAAGGCACA 60.605 50.000 0.00 0.00 40.83 4.57
1751 6679 1.742900 CTATGCAACGTGCTCGACCG 61.743 60.000 16.04 3.70 45.31 4.79
1832 6761 2.202797 CGGCATGGGAGTCGACAG 60.203 66.667 19.50 1.23 0.00 3.51
1843 6772 3.884091 GGGAGTCGACAGTATCTACACAT 59.116 47.826 19.50 0.00 0.00 3.21
1846 6775 4.270834 AGTCGACAGTATCTACACATGGT 58.729 43.478 19.50 0.00 0.00 3.55
2030 6959 3.276857 CTGTCAAGGCTGATAATGTGCT 58.723 45.455 0.00 0.00 33.05 4.40
2196 7125 5.456548 CATGGATGCTTGCCATTAACATA 57.543 39.130 0.00 0.00 43.42 2.29
2217 7146 0.035915 GAGAGGGAACACTGGAAGCC 60.036 60.000 0.00 0.00 37.60 4.35
2249 7178 0.319040 TCTGCGGATAAGATGCTCGC 60.319 55.000 0.00 0.00 45.60 5.03
2290 7219 1.488812 AGTGTGCCTTGTCCAACTACA 59.511 47.619 0.00 0.00 0.00 2.74
2300 7229 4.882842 TGTCCAACTACATCAAGCAGTA 57.117 40.909 0.00 0.00 0.00 2.74
2341 7270 3.084786 GGAGCTTGCAGGAAAACTATGT 58.915 45.455 0.00 0.00 0.00 2.29
2345 7274 5.749462 AGCTTGCAGGAAAACTATGTAGAT 58.251 37.500 0.00 0.00 0.00 1.98
2436 7368 2.703416 CATGTGCTTGCCTACAGAGAA 58.297 47.619 0.00 0.00 0.00 2.87
2446 7378 6.128418 GCTTGCCTACAGAGAAGTTTCTTTAG 60.128 42.308 0.00 0.00 37.73 1.85
2447 7379 5.238583 TGCCTACAGAGAAGTTTCTTTAGC 58.761 41.667 0.00 0.00 37.73 3.09
2448 7380 4.632251 GCCTACAGAGAAGTTTCTTTAGCC 59.368 45.833 0.00 0.00 37.73 3.93
2449 7381 5.794894 CCTACAGAGAAGTTTCTTTAGCCA 58.205 41.667 0.00 0.00 37.73 4.75
2464 7396 7.575414 TCTTTAGCCAAGTATGTTGTTTTCA 57.425 32.000 0.00 0.00 33.66 2.69
2466 7398 8.081633 TCTTTAGCCAAGTATGTTGTTTTCATG 58.918 33.333 0.00 0.00 33.66 3.07
2495 7427 7.992180 AAATTTGTGTGAGAACTGAACATTC 57.008 32.000 0.00 0.00 0.00 2.67
2498 7430 3.561310 TGTGTGAGAACTGAACATTCTGC 59.439 43.478 0.00 0.00 36.53 4.26
2539 7471 7.060633 CGGTTATCACATCTACAAAACTTTTGC 59.939 37.037 13.22 0.00 0.00 3.68
2546 7478 7.011295 CACATCTACAAAACTTTTGCCAACAAT 59.989 33.333 13.22 0.00 35.21 2.71
2547 7479 8.200792 ACATCTACAAAACTTTTGCCAACAATA 58.799 29.630 13.22 0.00 35.21 1.90
2562 7494 8.218338 TGCCAACAATAACATTGTTCATTTTT 57.782 26.923 13.00 2.37 40.30 1.94
2563 7495 9.330063 TGCCAACAATAACATTGTTCATTTTTA 57.670 25.926 13.00 0.00 40.30 1.52
2597 7529 7.222031 CACTAAGCACTGCGACAAAGTTATATA 59.778 37.037 0.00 0.00 0.00 0.86
2602 7534 7.495934 AGCACTGCGACAAAGTTATATAATCTT 59.504 33.333 0.00 2.14 0.00 2.40
2716 7648 9.793259 TGATATATAAAGGGAAATGTGTTCCTC 57.207 33.333 5.17 0.00 38.61 3.71
2938 7880 2.223386 CGTGAGAGAGCTAGTTGCCTAC 60.223 54.545 0.00 0.00 44.23 3.18
2976 7925 4.816925 GCAATACTTGGTTGAGAGTATCCC 59.183 45.833 0.00 0.00 37.94 3.85
3041 7995 7.544217 TGCCTTGTTTTTAAAGAGTTCAGTTTC 59.456 33.333 0.00 0.00 0.00 2.78
3102 8060 8.415950 TCTTATTGTCCAGGAAAATTTTGCTA 57.584 30.769 22.53 9.14 36.67 3.49
3103 8061 9.034800 TCTTATTGTCCAGGAAAATTTTGCTAT 57.965 29.630 22.53 14.99 36.67 2.97
3109 8067 9.474313 TGTCCAGGAAAATTTTGCTATATTAGT 57.526 29.630 22.53 0.00 36.67 2.24
3136 8094 6.487689 GTTGAAAACTCAGAGTATGGAAGG 57.512 41.667 2.64 0.00 45.32 3.46
3137 8095 4.579869 TGAAAACTCAGAGTATGGAAGGC 58.420 43.478 2.64 0.00 0.00 4.35
3138 8096 2.969628 AACTCAGAGTATGGAAGGCG 57.030 50.000 2.64 0.00 0.00 5.52
3139 8097 1.115467 ACTCAGAGTATGGAAGGCGG 58.885 55.000 0.00 0.00 0.00 6.13
3140 8098 1.115467 CTCAGAGTATGGAAGGCGGT 58.885 55.000 0.00 0.00 0.00 5.68
3141 8099 0.824109 TCAGAGTATGGAAGGCGGTG 59.176 55.000 0.00 0.00 0.00 4.94
3142 8100 0.179073 CAGAGTATGGAAGGCGGTGG 60.179 60.000 0.00 0.00 0.00 4.61
3143 8101 0.325296 AGAGTATGGAAGGCGGTGGA 60.325 55.000 0.00 0.00 0.00 4.02
3144 8102 0.759346 GAGTATGGAAGGCGGTGGAT 59.241 55.000 0.00 0.00 0.00 3.41
3145 8103 1.968493 GAGTATGGAAGGCGGTGGATA 59.032 52.381 0.00 0.00 0.00 2.59
3146 8104 2.567615 GAGTATGGAAGGCGGTGGATAT 59.432 50.000 0.00 0.00 0.00 1.63
3147 8105 2.303022 AGTATGGAAGGCGGTGGATATG 59.697 50.000 0.00 0.00 0.00 1.78
3148 8106 1.434188 ATGGAAGGCGGTGGATATGA 58.566 50.000 0.00 0.00 0.00 2.15
3149 8107 1.208706 TGGAAGGCGGTGGATATGAA 58.791 50.000 0.00 0.00 0.00 2.57
3150 8108 1.134220 TGGAAGGCGGTGGATATGAAC 60.134 52.381 0.00 0.00 0.00 3.18
3151 8109 1.594331 GAAGGCGGTGGATATGAACC 58.406 55.000 0.00 0.00 0.00 3.62
3152 8110 0.182775 AAGGCGGTGGATATGAACCC 59.817 55.000 0.00 0.00 32.44 4.11
3153 8111 0.694444 AGGCGGTGGATATGAACCCT 60.694 55.000 0.00 0.00 32.44 4.34
3154 8112 0.250338 GGCGGTGGATATGAACCCTC 60.250 60.000 0.00 0.00 32.44 4.30
3155 8113 0.759346 GCGGTGGATATGAACCCTCT 59.241 55.000 0.00 0.00 32.44 3.69
3156 8114 1.141053 GCGGTGGATATGAACCCTCTT 59.859 52.381 0.00 0.00 32.44 2.85
3157 8115 2.367567 GCGGTGGATATGAACCCTCTTA 59.632 50.000 0.00 0.00 32.44 2.10
3158 8116 3.181458 GCGGTGGATATGAACCCTCTTAA 60.181 47.826 0.00 0.00 32.44 1.85
3159 8117 4.632153 CGGTGGATATGAACCCTCTTAAG 58.368 47.826 0.00 0.00 32.44 1.85
3160 8118 4.344102 CGGTGGATATGAACCCTCTTAAGA 59.656 45.833 4.81 4.81 32.44 2.10
3161 8119 5.163343 CGGTGGATATGAACCCTCTTAAGAA 60.163 44.000 6.63 0.00 32.44 2.52
3162 8120 6.292150 GGTGGATATGAACCCTCTTAAGAAG 58.708 44.000 6.63 0.00 0.00 2.85
3163 8121 6.126739 GGTGGATATGAACCCTCTTAAGAAGT 60.127 42.308 6.63 4.39 0.00 3.01
3164 8122 7.070821 GGTGGATATGAACCCTCTTAAGAAGTA 59.929 40.741 6.63 0.00 0.00 2.24
3165 8123 8.145122 GTGGATATGAACCCTCTTAAGAAGTAG 58.855 40.741 6.63 0.00 0.00 2.57
3166 8124 7.844779 TGGATATGAACCCTCTTAAGAAGTAGT 59.155 37.037 6.63 0.00 0.00 2.73
3167 8125 8.706521 GGATATGAACCCTCTTAAGAAGTAGTT 58.293 37.037 6.63 7.56 0.00 2.24
3168 8126 9.535878 GATATGAACCCTCTTAAGAAGTAGTTG 57.464 37.037 6.63 0.00 0.00 3.16
3169 8127 5.548406 TGAACCCTCTTAAGAAGTAGTTGC 58.452 41.667 6.63 3.91 0.00 4.17
3170 8128 5.071250 TGAACCCTCTTAAGAAGTAGTTGCA 59.929 40.000 6.63 5.91 0.00 4.08
3171 8129 4.895961 ACCCTCTTAAGAAGTAGTTGCAC 58.104 43.478 6.63 0.00 0.00 4.57
3172 8130 4.593634 ACCCTCTTAAGAAGTAGTTGCACT 59.406 41.667 6.63 0.00 0.00 4.40
3173 8131 4.932200 CCCTCTTAAGAAGTAGTTGCACTG 59.068 45.833 6.63 0.00 0.00 3.66
3174 8132 5.279506 CCCTCTTAAGAAGTAGTTGCACTGA 60.280 44.000 6.63 0.00 0.00 3.41
3175 8133 5.635700 CCTCTTAAGAAGTAGTTGCACTGAC 59.364 44.000 6.63 0.00 0.00 3.51
3176 8134 5.539048 TCTTAAGAAGTAGTTGCACTGACC 58.461 41.667 1.68 0.00 0.00 4.02
3177 8135 2.841442 AGAAGTAGTTGCACTGACCC 57.159 50.000 0.00 0.00 0.00 4.46
3178 8136 1.000955 AGAAGTAGTTGCACTGACCCG 59.999 52.381 0.00 0.00 0.00 5.28
3179 8137 1.000506 GAAGTAGTTGCACTGACCCGA 59.999 52.381 0.00 0.00 0.00 5.14
3180 8138 1.267121 AGTAGTTGCACTGACCCGAT 58.733 50.000 0.00 0.00 0.00 4.18
3181 8139 1.066858 AGTAGTTGCACTGACCCGATG 60.067 52.381 0.00 0.00 0.00 3.84
3182 8140 1.067142 GTAGTTGCACTGACCCGATGA 60.067 52.381 0.00 0.00 0.00 2.92
3183 8141 0.320771 AGTTGCACTGACCCGATGAC 60.321 55.000 0.00 0.00 0.00 3.06
3184 8142 0.320771 GTTGCACTGACCCGATGACT 60.321 55.000 0.00 0.00 0.00 3.41
3185 8143 1.067142 GTTGCACTGACCCGATGACTA 60.067 52.381 0.00 0.00 0.00 2.59
3186 8144 1.485124 TGCACTGACCCGATGACTAT 58.515 50.000 0.00 0.00 0.00 2.12
3187 8145 1.831106 TGCACTGACCCGATGACTATT 59.169 47.619 0.00 0.00 0.00 1.73
3188 8146 2.236146 TGCACTGACCCGATGACTATTT 59.764 45.455 0.00 0.00 0.00 1.40
3189 8147 2.866762 GCACTGACCCGATGACTATTTC 59.133 50.000 0.00 0.00 0.00 2.17
3190 8148 3.430929 GCACTGACCCGATGACTATTTCT 60.431 47.826 0.00 0.00 0.00 2.52
3191 8149 4.759782 CACTGACCCGATGACTATTTCTT 58.240 43.478 0.00 0.00 0.00 2.52
3192 8150 5.178797 CACTGACCCGATGACTATTTCTTT 58.821 41.667 0.00 0.00 0.00 2.52
3193 8151 5.063944 CACTGACCCGATGACTATTTCTTTG 59.936 44.000 0.00 0.00 0.00 2.77
3194 8152 5.160607 TGACCCGATGACTATTTCTTTGT 57.839 39.130 0.00 0.00 0.00 2.83
3195 8153 5.556915 TGACCCGATGACTATTTCTTTGTT 58.443 37.500 0.00 0.00 0.00 2.83
3196 8154 6.001460 TGACCCGATGACTATTTCTTTGTTT 58.999 36.000 0.00 0.00 0.00 2.83
3197 8155 6.148811 TGACCCGATGACTATTTCTTTGTTTC 59.851 38.462 0.00 0.00 0.00 2.78
3198 8156 5.121768 ACCCGATGACTATTTCTTTGTTTCG 59.878 40.000 0.00 0.00 0.00 3.46
3199 8157 5.350365 CCCGATGACTATTTCTTTGTTTCGA 59.650 40.000 0.00 0.00 0.00 3.71
3200 8158 6.128391 CCCGATGACTATTTCTTTGTTTCGAA 60.128 38.462 0.00 0.00 0.00 3.71
3201 8159 7.295201 CCGATGACTATTTCTTTGTTTCGAAA 58.705 34.615 6.47 6.47 34.08 3.46
3202 8160 7.962918 CCGATGACTATTTCTTTGTTTCGAAAT 59.037 33.333 14.69 0.00 41.33 2.17
3203 8161 8.989767 CGATGACTATTTCTTTGTTTCGAAATC 58.010 33.333 14.69 8.51 39.69 2.17
3204 8162 9.825972 GATGACTATTTCTTTGTTTCGAAATCA 57.174 29.630 14.69 10.99 39.69 2.57
3206 8164 9.611284 TGACTATTTCTTTGTTTCGAAATCATG 57.389 29.630 14.69 6.38 39.69 3.07
3207 8165 9.612620 GACTATTTCTTTGTTTCGAAATCATGT 57.387 29.630 14.69 3.02 39.69 3.21
3210 8168 7.851822 TTTCTTTGTTTCGAAATCATGTAGC 57.148 32.000 14.69 0.00 0.00 3.58
3211 8169 5.617609 TCTTTGTTTCGAAATCATGTAGCG 58.382 37.500 14.69 0.00 0.00 4.26
3212 8170 5.407084 TCTTTGTTTCGAAATCATGTAGCGA 59.593 36.000 14.69 0.00 0.00 4.93
3213 8171 4.577687 TGTTTCGAAATCATGTAGCGAC 57.422 40.909 14.69 0.00 0.00 5.19
3214 8172 4.242475 TGTTTCGAAATCATGTAGCGACT 58.758 39.130 14.69 0.00 0.00 4.18
3215 8173 4.091365 TGTTTCGAAATCATGTAGCGACTG 59.909 41.667 14.69 0.00 0.00 3.51
3216 8174 3.503827 TCGAAATCATGTAGCGACTGT 57.496 42.857 0.00 0.00 0.00 3.55
3217 8175 3.435566 TCGAAATCATGTAGCGACTGTC 58.564 45.455 0.00 0.00 0.00 3.51
3218 8176 3.119637 TCGAAATCATGTAGCGACTGTCA 60.120 43.478 8.73 0.00 0.00 3.58
3219 8177 3.798878 CGAAATCATGTAGCGACTGTCAT 59.201 43.478 8.73 0.00 0.00 3.06
3220 8178 4.085363 CGAAATCATGTAGCGACTGTCATC 60.085 45.833 8.73 0.00 0.00 2.92
3221 8179 2.871182 TCATGTAGCGACTGTCATCC 57.129 50.000 8.73 0.00 0.00 3.51
3222 8180 2.379005 TCATGTAGCGACTGTCATCCT 58.621 47.619 8.73 3.54 0.00 3.24
3223 8181 2.760650 TCATGTAGCGACTGTCATCCTT 59.239 45.455 8.73 0.00 0.00 3.36
3224 8182 2.654749 TGTAGCGACTGTCATCCTTG 57.345 50.000 8.73 0.00 0.00 3.61
3225 8183 1.893137 TGTAGCGACTGTCATCCTTGT 59.107 47.619 8.73 0.00 0.00 3.16
3226 8184 2.299013 TGTAGCGACTGTCATCCTTGTT 59.701 45.455 8.73 0.00 0.00 2.83
3227 8185 2.550830 AGCGACTGTCATCCTTGTTT 57.449 45.000 8.73 0.00 0.00 2.83
3228 8186 2.851195 AGCGACTGTCATCCTTGTTTT 58.149 42.857 8.73 0.00 0.00 2.43
3229 8187 3.214328 AGCGACTGTCATCCTTGTTTTT 58.786 40.909 8.73 0.00 0.00 1.94
3230 8188 3.251004 AGCGACTGTCATCCTTGTTTTTC 59.749 43.478 8.73 0.00 0.00 2.29
3231 8189 3.251004 GCGACTGTCATCCTTGTTTTTCT 59.749 43.478 8.73 0.00 0.00 2.52
3232 8190 4.611581 GCGACTGTCATCCTTGTTTTTCTC 60.612 45.833 8.73 0.00 0.00 2.87
3233 8191 4.511454 CGACTGTCATCCTTGTTTTTCTCA 59.489 41.667 8.73 0.00 0.00 3.27
3234 8192 5.007626 CGACTGTCATCCTTGTTTTTCTCAA 59.992 40.000 8.73 0.00 0.00 3.02
3235 8193 6.136541 ACTGTCATCCTTGTTTTTCTCAAC 57.863 37.500 0.00 0.00 0.00 3.18
3236 8194 5.888161 ACTGTCATCCTTGTTTTTCTCAACT 59.112 36.000 0.00 0.00 0.00 3.16
3237 8195 6.038714 ACTGTCATCCTTGTTTTTCTCAACTC 59.961 38.462 0.00 0.00 0.00 3.01
3238 8196 5.007626 TGTCATCCTTGTTTTTCTCAACTCG 59.992 40.000 0.00 0.00 0.00 4.18
3239 8197 5.236478 GTCATCCTTGTTTTTCTCAACTCGA 59.764 40.000 0.00 0.00 0.00 4.04
3240 8198 5.466728 TCATCCTTGTTTTTCTCAACTCGAG 59.533 40.000 11.84 11.84 43.80 4.04
3253 8211 6.234920 TCTCAACTCGAGATAAGGATAGAGG 58.765 44.000 21.68 0.00 46.18 3.69
3254 8212 4.762765 TCAACTCGAGATAAGGATAGAGGC 59.237 45.833 21.68 0.00 0.00 4.70
3255 8213 4.374689 ACTCGAGATAAGGATAGAGGCA 57.625 45.455 21.68 0.00 0.00 4.75
3256 8214 4.929479 ACTCGAGATAAGGATAGAGGCAT 58.071 43.478 21.68 0.00 0.00 4.40
3257 8215 4.704540 ACTCGAGATAAGGATAGAGGCATG 59.295 45.833 21.68 0.00 0.00 4.06
3258 8216 4.019858 TCGAGATAAGGATAGAGGCATGG 58.980 47.826 0.00 0.00 0.00 3.66
3259 8217 3.766591 CGAGATAAGGATAGAGGCATGGT 59.233 47.826 0.00 0.00 0.00 3.55
3260 8218 4.142271 CGAGATAAGGATAGAGGCATGGTC 60.142 50.000 0.00 0.00 0.00 4.02
3261 8219 5.022227 AGATAAGGATAGAGGCATGGTCT 57.978 43.478 0.00 0.00 0.00 3.85
3262 8220 5.410602 AGATAAGGATAGAGGCATGGTCTT 58.589 41.667 0.00 0.00 0.00 3.01
3263 8221 3.853355 AAGGATAGAGGCATGGTCTTG 57.147 47.619 0.00 0.00 0.00 3.02
3264 8222 2.769209 AGGATAGAGGCATGGTCTTGT 58.231 47.619 0.00 0.00 0.00 3.16
3265 8223 3.118531 AGGATAGAGGCATGGTCTTGTT 58.881 45.455 0.00 0.00 0.00 2.83
3266 8224 3.118112 AGGATAGAGGCATGGTCTTGTTG 60.118 47.826 0.00 0.00 0.00 3.33
3267 8225 3.370953 GGATAGAGGCATGGTCTTGTTGT 60.371 47.826 0.00 0.00 0.00 3.32
3268 8226 2.664402 AGAGGCATGGTCTTGTTGTT 57.336 45.000 0.00 0.00 0.00 2.83
3269 8227 2.949447 AGAGGCATGGTCTTGTTGTTT 58.051 42.857 0.00 0.00 0.00 2.83
3270 8228 3.299503 AGAGGCATGGTCTTGTTGTTTT 58.700 40.909 0.00 0.00 0.00 2.43
3271 8229 3.706086 AGAGGCATGGTCTTGTTGTTTTT 59.294 39.130 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.700365 TGTCGTGACGAGCAGCGG 62.700 66.667 8.41 0.00 46.49 5.52
6 7 1.487452 TTGTTGTCGTGACGAGCAGC 61.487 55.000 8.41 12.07 36.23 5.25
7 8 0.229753 GTTGTTGTCGTGACGAGCAG 59.770 55.000 8.41 0.00 36.23 4.24
8 9 0.458716 TGTTGTTGTCGTGACGAGCA 60.459 50.000 8.41 7.06 36.23 4.26
9 10 0.648441 TTGTTGTTGTCGTGACGAGC 59.352 50.000 8.41 4.19 36.23 5.03
10 11 1.924524 AGTTGTTGTTGTCGTGACGAG 59.075 47.619 8.41 0.00 36.23 4.18
11 12 1.656594 CAGTTGTTGTTGTCGTGACGA 59.343 47.619 2.39 2.39 0.00 4.20
12 13 1.656594 TCAGTTGTTGTTGTCGTGACG 59.343 47.619 0.00 0.00 0.00 4.35
13 14 3.546020 CCATCAGTTGTTGTTGTCGTGAC 60.546 47.826 0.00 0.00 0.00 3.67
14 15 2.611751 CCATCAGTTGTTGTTGTCGTGA 59.388 45.455 0.00 0.00 0.00 4.35
15 16 2.286950 CCCATCAGTTGTTGTTGTCGTG 60.287 50.000 0.00 0.00 0.00 4.35
16 17 1.946768 CCCATCAGTTGTTGTTGTCGT 59.053 47.619 0.00 0.00 0.00 4.34
17 18 1.266718 CCCCATCAGTTGTTGTTGTCG 59.733 52.381 0.00 0.00 0.00 4.35
18 19 2.306847 ACCCCATCAGTTGTTGTTGTC 58.693 47.619 0.00 0.00 0.00 3.18
19 20 2.452600 ACCCCATCAGTTGTTGTTGT 57.547 45.000 0.00 0.00 0.00 3.32
20 21 4.927978 TTTACCCCATCAGTTGTTGTTG 57.072 40.909 0.00 0.00 0.00 3.33
21 22 6.311735 AGTATTTACCCCATCAGTTGTTGTT 58.688 36.000 0.00 0.00 0.00 2.83
22 23 5.887754 AGTATTTACCCCATCAGTTGTTGT 58.112 37.500 0.00 0.00 0.00 3.32
23 24 6.834168 AAGTATTTACCCCATCAGTTGTTG 57.166 37.500 0.00 0.00 0.00 3.33
24 25 7.849322 AAAAGTATTTACCCCATCAGTTGTT 57.151 32.000 0.00 0.00 37.28 2.83
25 26 7.308951 CGAAAAAGTATTTACCCCATCAGTTGT 60.309 37.037 0.00 0.00 37.28 3.32
26 27 7.027161 CGAAAAAGTATTTACCCCATCAGTTG 58.973 38.462 0.00 0.00 37.28 3.16
27 28 6.943718 TCGAAAAAGTATTTACCCCATCAGTT 59.056 34.615 0.00 0.00 37.28 3.16
28 29 6.478129 TCGAAAAAGTATTTACCCCATCAGT 58.522 36.000 0.00 0.00 37.28 3.41
29 30 6.995511 TCGAAAAAGTATTTACCCCATCAG 57.004 37.500 0.00 0.00 37.28 2.90
30 31 6.151480 GGTTCGAAAAAGTATTTACCCCATCA 59.849 38.462 0.00 0.00 37.28 3.07
31 32 6.151480 TGGTTCGAAAAAGTATTTACCCCATC 59.849 38.462 0.00 0.00 37.28 3.51
32 33 6.011481 TGGTTCGAAAAAGTATTTACCCCAT 58.989 36.000 0.00 0.00 37.28 4.00
33 34 5.383476 TGGTTCGAAAAAGTATTTACCCCA 58.617 37.500 0.00 0.00 37.28 4.96
34 35 5.963176 TGGTTCGAAAAAGTATTTACCCC 57.037 39.130 0.00 0.00 37.28 4.95
35 36 7.148705 GCATTTGGTTCGAAAAAGTATTTACCC 60.149 37.037 0.00 0.00 37.28 3.69
36 37 7.597369 AGCATTTGGTTCGAAAAAGTATTTACC 59.403 33.333 0.00 0.00 37.28 2.85
37 38 8.515473 AGCATTTGGTTCGAAAAAGTATTTAC 57.485 30.769 0.00 0.00 37.28 2.01
38 39 9.187455 GAAGCATTTGGTTCGAAAAAGTATTTA 57.813 29.630 0.00 0.00 41.76 1.40
39 40 8.072238 GAAGCATTTGGTTCGAAAAAGTATTT 57.928 30.769 0.00 0.00 41.76 1.40
40 41 7.637709 GAAGCATTTGGTTCGAAAAAGTATT 57.362 32.000 0.00 0.00 41.76 1.89
52 53 3.706086 ACTTGGAGTTGAAGCATTTGGTT 59.294 39.130 0.00 0.00 38.61 3.67
53 54 3.299503 ACTTGGAGTTGAAGCATTTGGT 58.700 40.909 0.00 0.00 0.00 3.67
54 55 4.301628 GAACTTGGAGTTGAAGCATTTGG 58.698 43.478 0.00 0.00 38.80 3.28
55 56 4.202141 TGGAACTTGGAGTTGAAGCATTTG 60.202 41.667 0.00 0.00 38.80 2.32
56 57 3.960102 TGGAACTTGGAGTTGAAGCATTT 59.040 39.130 0.00 0.00 38.80 2.32
57 58 3.565307 TGGAACTTGGAGTTGAAGCATT 58.435 40.909 0.00 0.00 38.80 3.56
58 59 3.228188 TGGAACTTGGAGTTGAAGCAT 57.772 42.857 0.00 0.00 38.80 3.79
59 60 2.687935 GTTGGAACTTGGAGTTGAAGCA 59.312 45.455 0.00 0.00 38.80 3.91
60 61 2.687935 TGTTGGAACTTGGAGTTGAAGC 59.312 45.455 0.00 0.00 38.80 3.86
61 62 3.947834 ACTGTTGGAACTTGGAGTTGAAG 59.052 43.478 0.00 0.00 38.80 3.02
62 63 3.963129 ACTGTTGGAACTTGGAGTTGAA 58.037 40.909 0.00 0.00 38.80 2.69
63 64 3.644966 ACTGTTGGAACTTGGAGTTGA 57.355 42.857 0.00 0.00 38.80 3.18
64 65 4.082245 ACAAACTGTTGGAACTTGGAGTTG 60.082 41.667 1.05 0.00 37.06 3.16
65 66 4.086457 ACAAACTGTTGGAACTTGGAGTT 58.914 39.130 1.05 0.00 38.47 3.01
66 67 3.697166 ACAAACTGTTGGAACTTGGAGT 58.303 40.909 1.05 0.00 39.22 3.85
67 68 4.718940 AACAAACTGTTGGAACTTGGAG 57.281 40.909 1.05 0.00 39.45 3.86
167 168 9.033481 TTTTACGTAAAAGATGGTATATCACCG 57.967 33.333 25.60 0.00 38.99 4.94
179 180 9.333497 GGCGAAAAACTATTTTACGTAAAAGAT 57.667 29.630 30.62 20.82 38.83 2.40
180 181 7.802720 GGGCGAAAAACTATTTTACGTAAAAGA 59.197 33.333 30.62 26.71 38.83 2.52
181 182 7.060979 GGGGCGAAAAACTATTTTACGTAAAAG 59.939 37.037 30.62 22.92 38.83 2.27
182 183 6.860539 GGGGCGAAAAACTATTTTACGTAAAA 59.139 34.615 29.81 29.81 38.83 1.52
183 184 6.377780 GGGGCGAAAAACTATTTTACGTAAA 58.622 36.000 16.59 16.59 38.83 2.01
184 185 5.106357 GGGGGCGAAAAACTATTTTACGTAA 60.106 40.000 3.29 3.29 38.83 3.18
185 186 4.394610 GGGGGCGAAAAACTATTTTACGTA 59.605 41.667 0.00 0.00 38.83 3.57
186 187 3.191162 GGGGGCGAAAAACTATTTTACGT 59.809 43.478 0.00 0.00 38.83 3.57
187 188 3.761657 GGGGGCGAAAAACTATTTTACG 58.238 45.455 0.00 0.00 38.83 3.18
205 206 3.299503 CCAGGATTTAAACATGAGGGGG 58.700 50.000 0.00 0.00 0.00 5.40
206 207 2.695147 GCCAGGATTTAAACATGAGGGG 59.305 50.000 0.00 0.00 0.00 4.79
207 208 3.633986 GAGCCAGGATTTAAACATGAGGG 59.366 47.826 0.00 0.00 0.00 4.30
208 209 3.633986 GGAGCCAGGATTTAAACATGAGG 59.366 47.826 0.00 0.00 0.00 3.86
209 210 3.313526 CGGAGCCAGGATTTAAACATGAG 59.686 47.826 0.00 0.00 0.00 2.90
210 211 3.278574 CGGAGCCAGGATTTAAACATGA 58.721 45.455 0.00 0.00 0.00 3.07
211 212 3.698029 CGGAGCCAGGATTTAAACATG 57.302 47.619 0.00 0.00 0.00 3.21
227 228 2.109799 CTACATGCAGGGGCGGAG 59.890 66.667 2.31 0.00 45.35 4.63
228 229 2.364973 TCTACATGCAGGGGCGGA 60.365 61.111 2.31 0.00 45.35 5.54
229 230 2.109799 CTCTACATGCAGGGGCGG 59.890 66.667 2.31 0.00 45.35 6.13
230 231 2.109799 CCTCTACATGCAGGGGCG 59.890 66.667 0.00 0.00 45.35 6.13
231 232 0.464554 GAACCTCTACATGCAGGGGC 60.465 60.000 12.19 0.00 40.16 5.80
232 233 0.911769 TGAACCTCTACATGCAGGGG 59.088 55.000 10.62 10.62 42.48 4.79
233 234 2.804572 CGATGAACCTCTACATGCAGGG 60.805 54.545 2.31 0.00 33.57 4.45
234 235 2.101415 TCGATGAACCTCTACATGCAGG 59.899 50.000 0.00 0.00 35.69 4.85
235 236 3.443099 TCGATGAACCTCTACATGCAG 57.557 47.619 0.00 0.00 0.00 4.41
236 237 3.243873 GGATCGATGAACCTCTACATGCA 60.244 47.826 0.54 0.00 0.00 3.96
237 238 3.006323 AGGATCGATGAACCTCTACATGC 59.994 47.826 0.54 0.00 28.38 4.06
238 239 4.321601 GGAGGATCGATGAACCTCTACATG 60.322 50.000 23.60 0.00 46.48 3.21
239 240 3.829601 GGAGGATCGATGAACCTCTACAT 59.170 47.826 23.60 0.00 46.48 2.29
240 241 3.223435 GGAGGATCGATGAACCTCTACA 58.777 50.000 23.60 0.00 46.48 2.74
241 242 2.559231 GGGAGGATCGATGAACCTCTAC 59.441 54.545 23.60 16.19 46.48 2.59
242 243 2.177016 TGGGAGGATCGATGAACCTCTA 59.823 50.000 23.60 14.38 46.48 2.43
243 244 1.062886 TGGGAGGATCGATGAACCTCT 60.063 52.381 23.60 5.10 46.48 3.69
244 245 1.069358 GTGGGAGGATCGATGAACCTC 59.931 57.143 18.88 18.88 46.53 3.85
245 246 1.123928 GTGGGAGGATCGATGAACCT 58.876 55.000 0.54 2.57 37.55 3.50
246 247 1.069358 GAGTGGGAGGATCGATGAACC 59.931 57.143 0.54 0.00 34.37 3.62
247 248 1.269309 CGAGTGGGAGGATCGATGAAC 60.269 57.143 0.54 0.00 38.72 3.18
248 249 1.032794 CGAGTGGGAGGATCGATGAA 58.967 55.000 0.54 0.00 38.72 2.57
249 250 0.823769 CCGAGTGGGAGGATCGATGA 60.824 60.000 0.54 0.00 38.72 2.92
250 251 0.823769 TCCGAGTGGGAGGATCGATG 60.824 60.000 0.54 0.00 40.94 3.84
251 252 1.537172 TCCGAGTGGGAGGATCGAT 59.463 57.895 0.00 0.00 40.94 3.59
252 253 3.004090 TCCGAGTGGGAGGATCGA 58.996 61.111 0.00 0.00 40.94 3.59
274 275 2.037367 TCCTCGTCCTCCACAGGG 59.963 66.667 0.00 0.00 40.80 4.45
275 276 2.055042 CCTCCTCGTCCTCCACAGG 61.055 68.421 0.00 0.00 42.01 4.00
300 301 1.699656 CTCAACTTCCGCAGCGATGG 61.700 60.000 18.75 7.83 0.00 3.51
306 307 2.097038 CGAGCCTCAACTTCCGCAG 61.097 63.158 0.00 0.00 0.00 5.18
313 314 2.348998 CCTTGGCGAGCCTCAACT 59.651 61.111 15.75 0.00 36.94 3.16
328 330 3.574074 AATGAAGGCAGCGGCACCT 62.574 57.895 11.88 8.61 43.71 4.00
334 336 0.453282 CGACAACAATGAAGGCAGCG 60.453 55.000 0.00 0.00 0.00 5.18
336 338 2.549754 AGTTCGACAACAATGAAGGCAG 59.450 45.455 0.00 0.00 34.60 4.85
381 384 0.110486 ATGGTTTCCCAACGAGCAGT 59.890 50.000 0.00 0.00 46.04 4.40
385 388 0.804989 GAGCATGGTTTCCCAACGAG 59.195 55.000 0.00 0.00 46.04 4.18
388 391 1.404583 GCATGAGCATGGTTTCCCAAC 60.405 52.381 12.00 0.00 46.04 3.77
405 409 5.186409 ACAATGTAAGGCAAAGATTCAGCAT 59.814 36.000 0.00 0.00 0.00 3.79
438 443 1.005748 TTGCAGTCACGAGCTCAGG 60.006 57.895 15.40 4.81 0.00 3.86
452 457 1.514678 GCAGGACCATGAACGTTGCA 61.515 55.000 5.00 4.03 0.00 4.08
457 462 0.606401 AACAGGCAGGACCATGAACG 60.606 55.000 0.00 0.00 43.14 3.95
466 471 2.310779 AGAGACACTAACAGGCAGGA 57.689 50.000 0.00 0.00 0.00 3.86
485 490 7.307131 TGAGAAGATGCAGATTCATATGGTA 57.693 36.000 14.19 0.00 0.00 3.25
490 495 6.429521 TCCATGAGAAGATGCAGATTCATA 57.570 37.500 14.19 4.95 0.00 2.15
494 499 3.478509 GCTCCATGAGAAGATGCAGATT 58.521 45.455 0.00 0.00 0.00 2.40
526 531 1.025041 TGGATCCACTGTCGATCTCG 58.975 55.000 11.44 0.00 37.02 4.04
572 601 2.743928 CAGCGCCTCACCTTCACC 60.744 66.667 2.29 0.00 0.00 4.02
573 602 3.426568 GCAGCGCCTCACCTTCAC 61.427 66.667 2.29 0.00 0.00 3.18
606 635 3.451178 AGATACCATCTACGTTGCAAGGT 59.549 43.478 26.16 26.16 38.00 3.50
615 645 3.181519 CGATCCGTCAGATACCATCTACG 60.182 52.174 0.00 0.00 37.58 3.51
631 919 1.688772 TCTCCCTTAAGGTCGATCCG 58.311 55.000 20.22 3.16 41.99 4.18
689 4373 2.695359 TGTCCAGCGATTTTAGTCCAC 58.305 47.619 0.00 0.00 0.00 4.02
694 4378 5.147162 GTGAAGTTTGTCCAGCGATTTTAG 58.853 41.667 0.00 0.00 0.00 1.85
696 4380 3.380004 TGTGAAGTTTGTCCAGCGATTTT 59.620 39.130 0.00 0.00 0.00 1.82
697 4381 2.948979 TGTGAAGTTTGTCCAGCGATTT 59.051 40.909 0.00 0.00 0.00 2.17
698 4382 2.290641 GTGTGAAGTTTGTCCAGCGATT 59.709 45.455 0.00 0.00 0.00 3.34
700 4384 1.295792 GTGTGAAGTTTGTCCAGCGA 58.704 50.000 0.00 0.00 0.00 4.93
702 4386 1.680338 AGGTGTGAAGTTTGTCCAGC 58.320 50.000 0.00 0.00 0.00 4.85
704 4388 3.456644 TCCTTAGGTGTGAAGTTTGTCCA 59.543 43.478 0.00 0.00 0.00 4.02
711 4397 0.984995 GCCCTCCTTAGGTGTGAAGT 59.015 55.000 0.00 0.00 41.89 3.01
727 4413 1.810030 CCGCAAGTTCTCGTAGCCC 60.810 63.158 0.00 0.00 0.00 5.19
730 4416 1.618861 CAGACCGCAAGTTCTCGTAG 58.381 55.000 0.00 0.00 0.00 3.51
748 4434 3.952967 TGCATGCAAGAATATAACTGCCA 59.047 39.130 20.30 0.00 0.00 4.92
750 4436 5.428496 TCTGCATGCAAGAATATAACTGC 57.572 39.130 22.88 0.00 0.00 4.40
783 4484 3.069586 AGTCATGTTCGGAGTCAGTTGAA 59.930 43.478 0.00 0.00 0.00 2.69
786 4487 2.628178 TGAGTCATGTTCGGAGTCAGTT 59.372 45.455 0.00 0.00 39.22 3.16
787 4488 2.029828 GTGAGTCATGTTCGGAGTCAGT 60.030 50.000 0.00 0.00 43.37 3.41
879 5643 3.055385 CGGCCCTGGCTAGCTATATTTTA 60.055 47.826 15.72 0.00 41.60 1.52
899 5663 4.570663 GATGGTCTCGTCCGCCGG 62.571 72.222 0.00 0.00 37.11 6.13
910 5674 2.811431 TGGTTCGTGACAATTGATGGTC 59.189 45.455 13.59 0.00 34.63 4.02
935 5699 1.673033 GGGGATTGATAGCGACGATGG 60.673 57.143 0.00 0.00 0.00 3.51
961 5728 4.612536 GCGATTGCCGGCCGATTG 62.613 66.667 30.73 21.56 39.04 2.67
992 5791 4.114997 GGTTTGACATGGCGCCGG 62.115 66.667 23.90 19.33 0.00 6.13
1250 6064 1.228657 AACGAGAAGGACAAAGGCGC 61.229 55.000 0.00 0.00 0.00 6.53
1269 6083 0.948678 GGCCGTGCTTGAAAGTTACA 59.051 50.000 0.00 0.00 0.00 2.41
1272 6086 2.200337 GGGGCCGTGCTTGAAAGTT 61.200 57.895 0.00 0.00 0.00 2.66
1273 6087 2.597510 GGGGCCGTGCTTGAAAGT 60.598 61.111 0.00 0.00 0.00 2.66
1275 6089 2.597217 CTGGGGCCGTGCTTGAAA 60.597 61.111 0.00 0.00 0.00 2.69
1395 6266 1.680522 GAAGGCGGAGAGATGGAGCA 61.681 60.000 0.00 0.00 0.00 4.26
1424 6301 3.075005 GACAGCAGTAGGGGCCGA 61.075 66.667 0.00 0.00 0.00 5.54
1430 6313 1.338337 CTACATCGGGACAGCAGTAGG 59.662 57.143 0.00 0.00 0.00 3.18
1435 6324 0.530744 GTGACTACATCGGGACAGCA 59.469 55.000 0.00 0.00 0.00 4.41
1436 6325 0.818296 AGTGACTACATCGGGACAGC 59.182 55.000 0.00 0.00 0.00 4.40
1437 6326 2.098280 CAGAGTGACTACATCGGGACAG 59.902 54.545 0.00 0.00 0.00 3.51
1438 6327 2.092323 CAGAGTGACTACATCGGGACA 58.908 52.381 0.00 0.00 0.00 4.02
1439 6328 1.405821 CCAGAGTGACTACATCGGGAC 59.594 57.143 0.00 0.00 0.00 4.46
1440 6329 1.763968 CCAGAGTGACTACATCGGGA 58.236 55.000 0.00 0.00 0.00 5.14
1446 6335 1.877576 CGCCAGCCAGAGTGACTACA 61.878 60.000 0.00 0.00 0.00 2.74
1447 6336 1.153745 CGCCAGCCAGAGTGACTAC 60.154 63.158 0.00 0.00 0.00 2.73
1448 6337 1.595993 GACGCCAGCCAGAGTGACTA 61.596 60.000 0.00 0.00 0.00 2.59
1449 6338 2.919856 ACGCCAGCCAGAGTGACT 60.920 61.111 0.00 0.00 0.00 3.41
1509 6398 1.286248 ATAGCGAGGGGAAAACCACT 58.714 50.000 0.00 0.00 42.91 4.00
1529 6418 2.031930 GTGTTTCGCGACCAAGGTTTTA 59.968 45.455 9.15 0.00 0.00 1.52
1534 6423 1.440938 TTGGTGTTTCGCGACCAAGG 61.441 55.000 22.06 0.00 45.37 3.61
1539 6428 1.083847 GTCGTTGGTGTTTCGCGAC 60.084 57.895 9.15 0.00 43.53 5.19
1546 6435 3.644884 CTCTGTAGAGTCGTTGGTGTT 57.355 47.619 0.68 0.00 37.40 3.32
1563 6452 2.217510 ACACGTGGAGGATGTACTCT 57.782 50.000 21.57 0.00 37.63 3.24
1586 6490 4.353191 ACTCCCACTTAGAGGTATCCGATA 59.647 45.833 0.00 0.00 35.58 2.92
1606 6510 2.328099 CCTTGAGGTTGCGCCACTC 61.328 63.158 11.78 13.05 40.61 3.51
1702 6630 0.040058 TGCCAATGATTGACCCAGCT 59.960 50.000 6.76 0.00 0.00 4.24
1751 6679 0.655733 CAAACGCATGACCGGATACC 59.344 55.000 9.46 0.00 0.00 2.73
1832 6761 4.380841 TGGAACGACCATGTGTAGATAC 57.619 45.455 0.00 0.00 44.64 2.24
1846 6775 0.736636 ATAGCGACGTCATGGAACGA 59.263 50.000 17.16 0.00 45.37 3.85
1878 6807 2.839486 TCAGCTCGACAAACCTGATT 57.161 45.000 0.00 0.00 30.00 2.57
2030 6959 2.563702 GGTAACTTGAACCCGTGACAA 58.436 47.619 0.00 0.00 0.00 3.18
2052 6981 0.539986 TCTTGCCACCCGATACCTTC 59.460 55.000 0.00 0.00 0.00 3.46
2164 7093 2.823593 CATCCATGCAACCGCGGA 60.824 61.111 35.90 10.13 42.97 5.54
2196 7125 1.349357 GCTTCCAGTGTTCCCTCTCTT 59.651 52.381 0.00 0.00 0.00 2.85
2235 7164 3.377346 TCAAGAGCGAGCATCTTATCC 57.623 47.619 0.00 0.00 35.26 2.59
2238 7167 2.893637 GGTTCAAGAGCGAGCATCTTA 58.106 47.619 0.00 0.00 35.26 2.10
2290 7219 4.713814 TCATCACCTTCTCTACTGCTTGAT 59.286 41.667 0.00 0.00 0.00 2.57
2300 7229 2.476199 CCCTTCCTCATCACCTTCTCT 58.524 52.381 0.00 0.00 0.00 3.10
2436 7368 7.582667 AACAACATACTTGGCTAAAGAAACT 57.417 32.000 6.68 0.00 39.38 2.66
2446 7378 5.527951 TCACATGAAAACAACATACTTGGC 58.472 37.500 0.00 0.00 0.00 4.52
2447 7379 9.689976 TTTATCACATGAAAACAACATACTTGG 57.310 29.630 0.00 0.00 0.00 3.61
2464 7396 8.394971 TCAGTTCTCACACAAATTTATCACAT 57.605 30.769 0.00 0.00 0.00 3.21
2466 7398 8.128582 TGTTCAGTTCTCACACAAATTTATCAC 58.871 33.333 0.00 0.00 0.00 3.06
2495 7427 2.222445 ACCGCGTGTTTACTTTTAGCAG 59.778 45.455 4.92 0.00 0.00 4.24
2498 7430 6.011277 GTGATAACCGCGTGTTTACTTTTAG 58.989 40.000 16.22 0.00 38.42 1.85
2539 7471 9.810231 GCTAAAAATGAACAATGTTATTGTTGG 57.190 29.630 20.77 4.87 42.11 3.77
2547 7479 9.369904 GTGGATATGCTAAAAATGAACAATGTT 57.630 29.630 0.00 0.00 0.00 2.71
2562 7494 3.552890 CGCAGTGCTTAGTGGATATGCTA 60.553 47.826 14.33 0.00 35.94 3.49
2563 7495 2.804572 CGCAGTGCTTAGTGGATATGCT 60.805 50.000 14.33 0.00 35.94 3.79
2597 7529 8.951243 GTCCTCAATAGAAGTTGCTAAAAGATT 58.049 33.333 0.00 0.00 0.00 2.40
2602 7534 7.362056 GCAATGTCCTCAATAGAAGTTGCTAAA 60.362 37.037 0.00 0.00 35.05 1.85
2619 7551 1.251251 GCAACCTTGAGCAATGTCCT 58.749 50.000 0.00 0.00 0.00 3.85
2812 7750 6.371809 TGGAAACAGTAGAACACAACATTC 57.628 37.500 0.00 0.00 35.01 2.67
2938 7880 6.769076 CAAGTATTGCTATGATTGCCTATCG 58.231 40.000 0.00 0.00 40.39 2.92
2976 7925 7.255590 CCAAATGGCACTTAATATGGAACCTAG 60.256 40.741 0.00 0.00 0.00 3.02
3041 7995 6.684979 GCAAAAATGTAAAAACCGGACAAAAG 59.315 34.615 9.46 0.00 0.00 2.27
3105 8063 9.653287 CATACTCTGAGTTTTCAACCATACTAA 57.347 33.333 16.53 0.00 31.69 2.24
3106 8064 8.258007 CCATACTCTGAGTTTTCAACCATACTA 58.742 37.037 16.53 0.00 31.69 1.82
3107 8065 7.038302 TCCATACTCTGAGTTTTCAACCATACT 60.038 37.037 16.53 0.00 31.69 2.12
3108 8066 7.103641 TCCATACTCTGAGTTTTCAACCATAC 58.896 38.462 16.53 0.00 31.69 2.39
3109 8067 7.252612 TCCATACTCTGAGTTTTCAACCATA 57.747 36.000 16.53 0.00 31.69 2.74
3110 8068 6.126863 TCCATACTCTGAGTTTTCAACCAT 57.873 37.500 16.53 0.00 31.69 3.55
3111 8069 5.560722 TCCATACTCTGAGTTTTCAACCA 57.439 39.130 16.53 0.00 31.69 3.67
3112 8070 5.412904 CCTTCCATACTCTGAGTTTTCAACC 59.587 44.000 16.53 0.00 31.69 3.77
3113 8071 5.106515 GCCTTCCATACTCTGAGTTTTCAAC 60.107 44.000 16.53 0.00 31.69 3.18
3114 8072 5.003804 GCCTTCCATACTCTGAGTTTTCAA 58.996 41.667 16.53 0.00 31.69 2.69
3115 8073 4.579869 GCCTTCCATACTCTGAGTTTTCA 58.420 43.478 16.53 0.00 0.00 2.69
3116 8074 3.619038 CGCCTTCCATACTCTGAGTTTTC 59.381 47.826 16.53 0.00 0.00 2.29
3117 8075 3.600388 CGCCTTCCATACTCTGAGTTTT 58.400 45.455 16.53 1.30 0.00 2.43
3118 8076 2.093447 CCGCCTTCCATACTCTGAGTTT 60.093 50.000 16.53 5.18 0.00 2.66
3119 8077 1.482593 CCGCCTTCCATACTCTGAGTT 59.517 52.381 16.53 1.26 0.00 3.01
3120 8078 1.115467 CCGCCTTCCATACTCTGAGT 58.885 55.000 15.57 15.57 0.00 3.41
3121 8079 1.115467 ACCGCCTTCCATACTCTGAG 58.885 55.000 2.45 2.45 0.00 3.35
3122 8080 0.824109 CACCGCCTTCCATACTCTGA 59.176 55.000 0.00 0.00 0.00 3.27
3123 8081 0.179073 CCACCGCCTTCCATACTCTG 60.179 60.000 0.00 0.00 0.00 3.35
3124 8082 0.325296 TCCACCGCCTTCCATACTCT 60.325 55.000 0.00 0.00 0.00 3.24
3125 8083 0.759346 ATCCACCGCCTTCCATACTC 59.241 55.000 0.00 0.00 0.00 2.59
3126 8084 2.097110 TATCCACCGCCTTCCATACT 57.903 50.000 0.00 0.00 0.00 2.12
3127 8085 2.301870 TCATATCCACCGCCTTCCATAC 59.698 50.000 0.00 0.00 0.00 2.39
3128 8086 2.615391 TCATATCCACCGCCTTCCATA 58.385 47.619 0.00 0.00 0.00 2.74
3129 8087 1.434188 TCATATCCACCGCCTTCCAT 58.566 50.000 0.00 0.00 0.00 3.41
3130 8088 1.134220 GTTCATATCCACCGCCTTCCA 60.134 52.381 0.00 0.00 0.00 3.53
3131 8089 1.594331 GTTCATATCCACCGCCTTCC 58.406 55.000 0.00 0.00 0.00 3.46
3132 8090 1.594331 GGTTCATATCCACCGCCTTC 58.406 55.000 0.00 0.00 0.00 3.46
3133 8091 0.182775 GGGTTCATATCCACCGCCTT 59.817 55.000 0.00 0.00 33.34 4.35
3134 8092 0.694444 AGGGTTCATATCCACCGCCT 60.694 55.000 0.00 0.00 33.34 5.52
3135 8093 0.250338 GAGGGTTCATATCCACCGCC 60.250 60.000 0.00 0.00 33.34 6.13
3136 8094 0.759346 AGAGGGTTCATATCCACCGC 59.241 55.000 0.00 0.00 33.34 5.68
3137 8095 4.344102 TCTTAAGAGGGTTCATATCCACCG 59.656 45.833 0.00 0.00 33.34 4.94
3138 8096 5.888982 TCTTAAGAGGGTTCATATCCACC 57.111 43.478 0.00 0.00 0.00 4.61
3139 8097 6.890293 ACTTCTTAAGAGGGTTCATATCCAC 58.110 40.000 17.89 0.00 0.00 4.02
3140 8098 7.844779 ACTACTTCTTAAGAGGGTTCATATCCA 59.155 37.037 17.89 0.00 0.00 3.41
3141 8099 8.252624 ACTACTTCTTAAGAGGGTTCATATCC 57.747 38.462 17.89 0.00 0.00 2.59
3142 8100 9.535878 CAACTACTTCTTAAGAGGGTTCATATC 57.464 37.037 17.89 0.00 0.00 1.63
3143 8101 7.988028 GCAACTACTTCTTAAGAGGGTTCATAT 59.012 37.037 17.89 0.00 0.00 1.78
3144 8102 7.038587 TGCAACTACTTCTTAAGAGGGTTCATA 60.039 37.037 17.89 1.47 0.00 2.15
3145 8103 6.174049 GCAACTACTTCTTAAGAGGGTTCAT 58.826 40.000 17.89 0.35 0.00 2.57
3146 8104 5.071250 TGCAACTACTTCTTAAGAGGGTTCA 59.929 40.000 17.89 10.35 0.00 3.18
3147 8105 5.408909 GTGCAACTACTTCTTAAGAGGGTTC 59.591 44.000 17.89 8.50 0.00 3.62
3148 8106 5.306394 GTGCAACTACTTCTTAAGAGGGTT 58.694 41.667 17.89 10.55 0.00 4.11
3149 8107 4.895961 GTGCAACTACTTCTTAAGAGGGT 58.104 43.478 17.89 16.02 0.00 4.34
3165 8123 0.320771 AGTCATCGGGTCAGTGCAAC 60.321 55.000 0.00 0.00 0.00 4.17
3166 8124 1.262417 TAGTCATCGGGTCAGTGCAA 58.738 50.000 0.00 0.00 0.00 4.08
3167 8125 1.485124 ATAGTCATCGGGTCAGTGCA 58.515 50.000 0.00 0.00 0.00 4.57
3168 8126 2.604046 AATAGTCATCGGGTCAGTGC 57.396 50.000 0.00 0.00 0.00 4.40
3169 8127 4.392921 AGAAATAGTCATCGGGTCAGTG 57.607 45.455 0.00 0.00 0.00 3.66
3170 8128 5.178797 CAAAGAAATAGTCATCGGGTCAGT 58.821 41.667 0.00 0.00 0.00 3.41
3171 8129 5.178797 ACAAAGAAATAGTCATCGGGTCAG 58.821 41.667 0.00 0.00 0.00 3.51
3172 8130 5.160607 ACAAAGAAATAGTCATCGGGTCA 57.839 39.130 0.00 0.00 0.00 4.02
3173 8131 6.496338 AAACAAAGAAATAGTCATCGGGTC 57.504 37.500 0.00 0.00 0.00 4.46
3174 8132 5.121768 CGAAACAAAGAAATAGTCATCGGGT 59.878 40.000 0.00 0.00 0.00 5.28
3175 8133 5.350365 TCGAAACAAAGAAATAGTCATCGGG 59.650 40.000 0.00 0.00 0.00 5.14
3176 8134 6.403333 TCGAAACAAAGAAATAGTCATCGG 57.597 37.500 0.00 0.00 0.00 4.18
3177 8135 8.880768 ATTTCGAAACAAAGAAATAGTCATCG 57.119 30.769 13.81 0.00 43.00 3.84
3178 8136 9.825972 TGATTTCGAAACAAAGAAATAGTCATC 57.174 29.630 13.81 1.54 44.29 2.92
3180 8138 9.611284 CATGATTTCGAAACAAAGAAATAGTCA 57.389 29.630 13.81 8.66 44.29 3.41
3181 8139 9.612620 ACATGATTTCGAAACAAAGAAATAGTC 57.387 29.630 13.81 2.84 44.29 2.59
3184 8142 9.554724 GCTACATGATTTCGAAACAAAGAAATA 57.445 29.630 13.81 0.00 44.29 1.40
3185 8143 7.271223 CGCTACATGATTTCGAAACAAAGAAAT 59.729 33.333 13.81 3.45 46.16 2.17
3186 8144 6.577055 CGCTACATGATTTCGAAACAAAGAAA 59.423 34.615 13.81 0.00 40.14 2.52
3187 8145 6.073494 TCGCTACATGATTTCGAAACAAAGAA 60.073 34.615 13.81 0.00 0.00 2.52
3188 8146 5.407084 TCGCTACATGATTTCGAAACAAAGA 59.593 36.000 13.81 1.17 0.00 2.52
3189 8147 5.504755 GTCGCTACATGATTTCGAAACAAAG 59.495 40.000 13.81 12.03 0.00 2.77
3190 8148 5.178623 AGTCGCTACATGATTTCGAAACAAA 59.821 36.000 13.81 1.95 0.00 2.83
3191 8149 4.688879 AGTCGCTACATGATTTCGAAACAA 59.311 37.500 13.81 4.69 0.00 2.83
3192 8150 4.091365 CAGTCGCTACATGATTTCGAAACA 59.909 41.667 13.81 13.38 0.00 2.83
3193 8151 4.091509 ACAGTCGCTACATGATTTCGAAAC 59.908 41.667 13.81 8.03 0.00 2.78
3194 8152 4.242475 ACAGTCGCTACATGATTTCGAAA 58.758 39.130 13.91 13.91 0.00 3.46
3195 8153 3.845178 ACAGTCGCTACATGATTTCGAA 58.155 40.909 0.00 0.00 0.00 3.71
3196 8154 3.119637 TGACAGTCGCTACATGATTTCGA 60.120 43.478 0.00 0.00 0.00 3.71
3197 8155 3.179048 TGACAGTCGCTACATGATTTCG 58.821 45.455 0.00 0.00 0.00 3.46
3198 8156 4.210120 GGATGACAGTCGCTACATGATTTC 59.790 45.833 0.00 0.00 0.00 2.17
3199 8157 4.122776 GGATGACAGTCGCTACATGATTT 58.877 43.478 0.00 0.00 0.00 2.17
3200 8158 3.386078 AGGATGACAGTCGCTACATGATT 59.614 43.478 0.00 0.00 0.00 2.57
3201 8159 2.961741 AGGATGACAGTCGCTACATGAT 59.038 45.455 0.00 0.00 0.00 2.45
3202 8160 2.379005 AGGATGACAGTCGCTACATGA 58.621 47.619 0.00 0.00 0.00 3.07
3203 8161 2.862536 CAAGGATGACAGTCGCTACATG 59.137 50.000 0.00 0.00 0.00 3.21
3204 8162 2.497675 ACAAGGATGACAGTCGCTACAT 59.502 45.455 0.00 0.00 0.00 2.29
3205 8163 1.893137 ACAAGGATGACAGTCGCTACA 59.107 47.619 0.00 0.00 0.00 2.74
3206 8164 2.656560 ACAAGGATGACAGTCGCTAC 57.343 50.000 0.00 0.00 0.00 3.58
3207 8165 3.678056 AAACAAGGATGACAGTCGCTA 57.322 42.857 0.00 0.00 0.00 4.26
3208 8166 2.550830 AAACAAGGATGACAGTCGCT 57.449 45.000 0.00 0.00 0.00 4.93
3209 8167 3.251004 AGAAAAACAAGGATGACAGTCGC 59.749 43.478 0.00 0.00 0.00 5.19
3210 8168 4.511454 TGAGAAAAACAAGGATGACAGTCG 59.489 41.667 0.00 0.00 0.00 4.18
3211 8169 6.038714 AGTTGAGAAAAACAAGGATGACAGTC 59.961 38.462 0.00 0.00 32.21 3.51
3212 8170 5.888161 AGTTGAGAAAAACAAGGATGACAGT 59.112 36.000 0.00 0.00 32.21 3.55
3213 8171 6.382869 AGTTGAGAAAAACAAGGATGACAG 57.617 37.500 0.00 0.00 32.21 3.51
3214 8172 5.007626 CGAGTTGAGAAAAACAAGGATGACA 59.992 40.000 0.00 0.00 32.21 3.58
3215 8173 5.236478 TCGAGTTGAGAAAAACAAGGATGAC 59.764 40.000 0.00 0.00 32.21 3.06
3216 8174 5.364778 TCGAGTTGAGAAAAACAAGGATGA 58.635 37.500 0.00 0.00 32.21 2.92
3217 8175 5.673337 TCGAGTTGAGAAAAACAAGGATG 57.327 39.130 0.00 0.00 32.21 3.51
3230 8188 5.106317 GCCTCTATCCTTATCTCGAGTTGAG 60.106 48.000 13.13 10.18 46.72 3.02
3231 8189 4.762765 GCCTCTATCCTTATCTCGAGTTGA 59.237 45.833 13.13 0.00 0.00 3.18
3232 8190 4.520874 TGCCTCTATCCTTATCTCGAGTTG 59.479 45.833 13.13 1.35 0.00 3.16
3233 8191 4.730966 TGCCTCTATCCTTATCTCGAGTT 58.269 43.478 13.13 6.80 0.00 3.01
3234 8192 4.374689 TGCCTCTATCCTTATCTCGAGT 57.625 45.455 13.13 2.46 0.00 4.18
3235 8193 4.097741 CCATGCCTCTATCCTTATCTCGAG 59.902 50.000 5.93 5.93 0.00 4.04
3236 8194 4.019858 CCATGCCTCTATCCTTATCTCGA 58.980 47.826 0.00 0.00 0.00 4.04
3237 8195 3.766591 ACCATGCCTCTATCCTTATCTCG 59.233 47.826 0.00 0.00 0.00 4.04
3238 8196 5.022787 AGACCATGCCTCTATCCTTATCTC 58.977 45.833 0.00 0.00 0.00 2.75
3239 8197 5.022227 AGACCATGCCTCTATCCTTATCT 57.978 43.478 0.00 0.00 0.00 1.98
3240 8198 5.012561 ACAAGACCATGCCTCTATCCTTATC 59.987 44.000 0.00 0.00 0.00 1.75
3241 8199 4.910304 ACAAGACCATGCCTCTATCCTTAT 59.090 41.667 0.00 0.00 0.00 1.73
3242 8200 4.298626 ACAAGACCATGCCTCTATCCTTA 58.701 43.478 0.00 0.00 0.00 2.69
3243 8201 3.118531 ACAAGACCATGCCTCTATCCTT 58.881 45.455 0.00 0.00 0.00 3.36
3244 8202 2.769209 ACAAGACCATGCCTCTATCCT 58.231 47.619 0.00 0.00 0.00 3.24
3245 8203 3.209410 CAACAAGACCATGCCTCTATCC 58.791 50.000 0.00 0.00 0.00 2.59
3246 8204 3.878778 ACAACAAGACCATGCCTCTATC 58.121 45.455 0.00 0.00 0.00 2.08
3247 8205 4.307032 AACAACAAGACCATGCCTCTAT 57.693 40.909 0.00 0.00 0.00 1.98
3248 8206 3.788227 AACAACAAGACCATGCCTCTA 57.212 42.857 0.00 0.00 0.00 2.43
3249 8207 2.664402 AACAACAAGACCATGCCTCT 57.336 45.000 0.00 0.00 0.00 3.69
3250 8208 3.733443 AAAACAACAAGACCATGCCTC 57.267 42.857 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.