Multiple sequence alignment - TraesCS3B01G042900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G042900 chr3B 100.000 3275 0 0 1 3275 22163822 22167096 0.000000e+00 6048.0
1 TraesCS3B01G042900 chr3B 84.132 1336 181 17 937 2265 22179394 22180705 0.000000e+00 1264.0
2 TraesCS3B01G042900 chr3B 87.164 670 84 2 1616 2284 22172032 22172700 0.000000e+00 760.0
3 TraesCS3B01G042900 chr3B 85.526 228 29 3 1244 1468 22199165 22198939 5.460000e-58 235.0
4 TraesCS3B01G042900 chr3B 94.958 119 5 1 2617 2735 466455238 466455121 5.580000e-43 185.0
5 TraesCS3B01G042900 chr3B 93.590 78 4 1 2427 2504 22166171 22166247 7.430000e-22 115.0
6 TraesCS3B01G042900 chr3B 93.590 78 4 1 2350 2426 22166248 22166325 7.430000e-22 115.0
7 TraesCS3B01G042900 chr3D 88.805 1715 122 21 738 2428 15122971 15124639 0.000000e+00 2039.0
8 TraesCS3B01G042900 chr3D 85.081 1354 172 19 931 2279 15201073 15202401 0.000000e+00 1354.0
9 TraesCS3B01G042900 chr3D 82.828 990 136 21 1301 2283 15155936 15156898 0.000000e+00 856.0
10 TraesCS3B01G042900 chr3D 85.524 677 98 0 1616 2292 15209289 15208613 0.000000e+00 708.0
11 TraesCS3B01G042900 chr3D 84.575 577 32 20 2732 3273 15124761 15125315 1.350000e-143 520.0
12 TraesCS3B01G042900 chr3D 84.330 485 58 13 138 611 15122460 15122937 2.980000e-125 459.0
13 TraesCS3B01G042900 chr3D 94.118 85 5 0 3189 3273 15031108 15031192 2.650000e-26 130.0
14 TraesCS3B01G042900 chr3D 76.642 274 25 22 2907 3162 15216324 15216072 7.430000e-22 115.0
15 TraesCS3B01G042900 chr3D 82.927 123 18 2 1 122 15122258 15122378 1.240000e-19 108.0
16 TraesCS3B01G042900 chr3A 89.170 1108 95 10 1331 2428 21277362 21276270 0.000000e+00 1358.0
17 TraesCS3B01G042900 chr3A 82.332 1381 209 22 925 2284 21168594 21169960 0.000000e+00 1166.0
18 TraesCS3B01G042900 chr3A 82.235 1351 190 29 937 2285 21176421 21177723 0.000000e+00 1120.0
19 TraesCS3B01G042900 chr3A 82.126 1270 181 26 1029 2285 21290548 21289312 0.000000e+00 1046.0
20 TraesCS3B01G042900 chr3A 84.732 989 133 12 1299 2284 21314184 21313211 0.000000e+00 974.0
21 TraesCS3B01G042900 chr3A 83.083 999 128 21 1299 2284 21268122 21267152 0.000000e+00 870.0
22 TraesCS3B01G042900 chr3A 82.071 898 145 13 1381 2267 21154056 21154948 0.000000e+00 752.0
23 TraesCS3B01G042900 chr3A 92.683 492 32 2 852 1340 21278106 21277616 0.000000e+00 706.0
24 TraesCS3B01G042900 chr3A 86.486 518 54 11 946 1462 21237609 21237107 3.690000e-154 555.0
25 TraesCS3B01G042900 chr3A 83.793 580 37 21 2732 3273 21276148 21275588 6.310000e-137 497.0
26 TraesCS3B01G042900 chr3A 79.670 728 86 38 148 834 21284373 21283667 4.950000e-128 468.0
27 TraesCS3B01G042900 chr3A 86.400 375 49 2 989 1362 21148382 21148755 3.040000e-110 409.0
28 TraesCS3B01G042900 chr3A 100.000 28 0 0 576 603 747436230 747436257 6.000000e-03 52.8
29 TraesCS3B01G042900 chr5B 99.099 111 1 0 2623 2733 622630608 622630498 1.990000e-47 200.0
30 TraesCS3B01G042900 chr5B 96.552 116 3 1 2617 2732 632580637 632580523 1.200000e-44 191.0
31 TraesCS3B01G042900 chrUn 95.868 121 4 1 2622 2741 347838515 347838635 9.270000e-46 195.0
32 TraesCS3B01G042900 chrUn 95.868 121 4 1 2622 2741 441816840 441816720 9.270000e-46 195.0
33 TraesCS3B01G042900 chr7B 95.868 121 4 1 2622 2741 695049285 695049405 9.270000e-46 195.0
34 TraesCS3B01G042900 chr5D 96.552 116 3 1 2625 2739 519979523 519979408 1.200000e-44 191.0
35 TraesCS3B01G042900 chr4B 93.750 128 5 2 2608 2735 299557706 299557582 4.310000e-44 189.0
36 TraesCS3B01G042900 chr2B 91.111 135 8 4 2607 2739 176698114 176697982 2.600000e-41 180.0
37 TraesCS3B01G042900 chr2B 85.106 94 14 0 3180 3273 74900481 74900574 2.690000e-16 97.1
38 TraesCS3B01G042900 chr2D 97.143 35 1 0 572 606 16011358 16011324 3.530000e-05 60.2
39 TraesCS3B01G042900 chr2A 94.737 38 0 1 572 607 17923992 17923955 1.270000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G042900 chr3B 22163822 22167096 3274 False 2092.666667 6048 95.726667 1 3275 3 chr3B.!!$F3 3274
1 TraesCS3B01G042900 chr3B 22179394 22180705 1311 False 1264.000000 1264 84.132000 937 2265 1 chr3B.!!$F2 1328
2 TraesCS3B01G042900 chr3B 22172032 22172700 668 False 760.000000 760 87.164000 1616 2284 1 chr3B.!!$F1 668
3 TraesCS3B01G042900 chr3D 15201073 15202401 1328 False 1354.000000 1354 85.081000 931 2279 1 chr3D.!!$F3 1348
4 TraesCS3B01G042900 chr3D 15155936 15156898 962 False 856.000000 856 82.828000 1301 2283 1 chr3D.!!$F2 982
5 TraesCS3B01G042900 chr3D 15122258 15125315 3057 False 781.500000 2039 85.159250 1 3273 4 chr3D.!!$F4 3272
6 TraesCS3B01G042900 chr3D 15208613 15209289 676 True 708.000000 708 85.524000 1616 2292 1 chr3D.!!$R1 676
7 TraesCS3B01G042900 chr3A 21168594 21169960 1366 False 1166.000000 1166 82.332000 925 2284 1 chr3A.!!$F3 1359
8 TraesCS3B01G042900 chr3A 21176421 21177723 1302 False 1120.000000 1120 82.235000 937 2285 1 chr3A.!!$F4 1348
9 TraesCS3B01G042900 chr3A 21289312 21290548 1236 True 1046.000000 1046 82.126000 1029 2285 1 chr3A.!!$R4 1256
10 TraesCS3B01G042900 chr3A 21313211 21314184 973 True 974.000000 974 84.732000 1299 2284 1 chr3A.!!$R5 985
11 TraesCS3B01G042900 chr3A 21267152 21268122 970 True 870.000000 870 83.083000 1299 2284 1 chr3A.!!$R2 985
12 TraesCS3B01G042900 chr3A 21275588 21278106 2518 True 853.666667 1358 88.548667 852 3273 3 chr3A.!!$R6 2421
13 TraesCS3B01G042900 chr3A 21154056 21154948 892 False 752.000000 752 82.071000 1381 2267 1 chr3A.!!$F2 886
14 TraesCS3B01G042900 chr3A 21237107 21237609 502 True 555.000000 555 86.486000 946 1462 1 chr3A.!!$R1 516
15 TraesCS3B01G042900 chr3A 21283667 21284373 706 True 468.000000 468 79.670000 148 834 1 chr3A.!!$R3 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
673 762 0.110373 CCAAGCAAAACTACGGACGC 60.110 55.0 0.00 0.0 0.00 5.19 F
724 813 0.172803 ACAGCGAACCGGAGTATCAC 59.827 55.0 9.46 0.0 36.25 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2269 2710 0.176680 CAGTGTCCCCTTCCTCATCG 59.823 60.0 0.0 0.0 0.0 3.84 R
2722 3178 0.108281 GCGTTCAACCTACTCCCTCC 60.108 60.0 0.0 0.0 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.871722 TGTTGAATCGGGCAAGAACG 59.128 50.000 0.00 0.00 0.00 3.95
30 31 0.958382 TTGAATCGGGCAAGAACGGG 60.958 55.000 0.00 0.00 0.00 5.28
31 32 2.750237 AATCGGGCAAGAACGGGC 60.750 61.111 0.00 0.00 0.00 6.13
42 43 3.035576 GAACGGGCACTAAAGGCGC 62.036 63.158 0.00 0.00 40.43 6.53
46 47 3.799755 GGCACTAAAGGCGCCGTG 61.800 66.667 23.20 23.13 35.79 4.94
49 50 1.963190 GCACTAAAGGCGCCGTGTAC 61.963 60.000 26.24 13.92 0.00 2.90
57 58 2.277373 CGCCGTGTACGAGCTCTC 60.277 66.667 12.85 2.92 43.02 3.20
66 67 2.209064 TACGAGCTCTCAACCGCACC 62.209 60.000 12.85 0.00 0.00 5.01
67 68 2.811317 GAGCTCTCAACCGCACCG 60.811 66.667 6.43 0.00 0.00 4.94
79 80 4.741781 GCACCGCACGCACACATC 62.742 66.667 0.00 0.00 0.00 3.06
108 109 0.110678 TATTTTGTCACCCGTGGGCA 59.889 50.000 4.41 0.00 39.32 5.36
122 124 2.368439 GTGGGCAGCAAATAGTCATGA 58.632 47.619 0.00 0.00 0.00 3.07
123 125 2.954318 GTGGGCAGCAAATAGTCATGAT 59.046 45.455 0.00 0.00 0.00 2.45
124 126 2.953648 TGGGCAGCAAATAGTCATGATG 59.046 45.455 0.00 0.00 36.10 3.07
126 128 3.382546 GGGCAGCAAATAGTCATGATGTT 59.617 43.478 0.00 0.00 35.47 2.71
128 130 5.413499 GGCAGCAAATAGTCATGATGTTTT 58.587 37.500 0.00 0.00 35.47 2.43
129 131 5.517770 GGCAGCAAATAGTCATGATGTTTTC 59.482 40.000 0.00 0.00 35.47 2.29
130 132 5.517770 GCAGCAAATAGTCATGATGTTTTCC 59.482 40.000 0.00 0.00 35.47 3.13
131 133 6.626623 GCAGCAAATAGTCATGATGTTTTCCT 60.627 38.462 0.00 0.00 35.47 3.36
132 134 6.750501 CAGCAAATAGTCATGATGTTTTCCTG 59.249 38.462 0.00 1.61 0.00 3.86
133 135 5.517770 GCAAATAGTCATGATGTTTTCCTGC 59.482 40.000 0.00 0.00 0.00 4.85
134 136 6.623486 CAAATAGTCATGATGTTTTCCTGCA 58.377 36.000 0.00 0.00 0.00 4.41
135 137 6.446781 AATAGTCATGATGTTTTCCTGCAG 57.553 37.500 6.78 6.78 0.00 4.41
136 138 3.759581 AGTCATGATGTTTTCCTGCAGT 58.240 40.909 13.81 0.00 0.00 4.40
137 139 4.147321 AGTCATGATGTTTTCCTGCAGTT 58.853 39.130 13.81 0.00 0.00 3.16
138 140 4.586001 AGTCATGATGTTTTCCTGCAGTTT 59.414 37.500 13.81 0.00 0.00 2.66
139 141 5.069516 AGTCATGATGTTTTCCTGCAGTTTT 59.930 36.000 13.81 0.00 0.00 2.43
140 142 5.754890 GTCATGATGTTTTCCTGCAGTTTTT 59.245 36.000 13.81 0.00 0.00 1.94
141 143 5.984926 TCATGATGTTTTCCTGCAGTTTTTC 59.015 36.000 13.81 0.88 0.00 2.29
143 145 4.161189 TGATGTTTTCCTGCAGTTTTTCCA 59.839 37.500 13.81 2.40 0.00 3.53
145 147 5.096443 TGTTTTCCTGCAGTTTTTCCAAT 57.904 34.783 13.81 0.00 0.00 3.16
148 150 6.432472 TGTTTTCCTGCAGTTTTTCCAATTTT 59.568 30.769 13.81 0.00 0.00 1.82
149 151 7.040132 TGTTTTCCTGCAGTTTTTCCAATTTTT 60.040 29.630 13.81 0.00 0.00 1.94
150 152 6.676237 TTCCTGCAGTTTTTCCAATTTTTC 57.324 33.333 13.81 0.00 0.00 2.29
151 153 5.122519 TCCTGCAGTTTTTCCAATTTTTCC 58.877 37.500 13.81 0.00 0.00 3.13
154 220 6.095300 CCTGCAGTTTTTCCAATTTTTCCTTT 59.905 34.615 13.81 0.00 0.00 3.11
163 229 9.684448 TTTTCCAATTTTTCCTTTTGTGTTTTC 57.316 25.926 0.00 0.00 0.00 2.29
175 241 6.419980 TTTTGTGTTTTCTTGCTTCCATTG 57.580 33.333 0.00 0.00 0.00 2.82
182 248 6.091986 TGTTTTCTTGCTTCCATTGTTTTCAC 59.908 34.615 0.00 0.00 0.00 3.18
187 253 7.725251 TCTTGCTTCCATTGTTTTCACTATTT 58.275 30.769 0.00 0.00 0.00 1.40
189 255 8.729805 TTGCTTCCATTGTTTTCACTATTTTT 57.270 26.923 0.00 0.00 0.00 1.94
213 279 5.968254 TCTGGTTTTTAGTGGTTTTGTTCC 58.032 37.500 0.00 0.00 0.00 3.62
222 289 4.939271 AGTGGTTTTGTTCCGGTTATTTG 58.061 39.130 0.00 0.00 0.00 2.32
253 321 6.635755 TGTTTTGGTACCTTTTTCCTTTCAG 58.364 36.000 14.36 0.00 0.00 3.02
256 324 7.957992 TTTGGTACCTTTTTCCTTTCAGTTA 57.042 32.000 14.36 0.00 0.00 2.24
387 461 8.978564 TTGCATTACAAAAATGATAATCGTGT 57.021 26.923 2.01 0.00 34.56 4.49
457 531 7.656948 ACTCCAAAATGACCATTGTGTATTTTG 59.343 33.333 15.27 15.27 40.70 2.44
460 534 9.001542 CCAAAATGACCATTGTGTATTTTGAAT 57.998 29.630 19.83 0.00 41.90 2.57
493 567 9.878599 CATCGTATATTAAGAAAATGTCCAACC 57.121 33.333 0.00 0.00 0.00 3.77
494 568 8.441312 TCGTATATTAAGAAAATGTCCAACCC 57.559 34.615 0.00 0.00 0.00 4.11
500 574 3.352648 AGAAAATGTCCAACCCATACCG 58.647 45.455 0.00 0.00 0.00 4.02
510 584 3.556004 CCAACCCATACCGCAAAATGTTT 60.556 43.478 0.00 0.00 0.00 2.83
514 588 6.043854 ACCCATACCGCAAAATGTTTATTT 57.956 33.333 0.00 0.00 38.11 1.40
516 590 6.937465 ACCCATACCGCAAAATGTTTATTTTT 59.063 30.769 0.00 0.00 42.33 1.94
517 591 7.095017 ACCCATACCGCAAAATGTTTATTTTTG 60.095 33.333 4.88 4.88 42.33 2.44
519 593 8.499162 CCATACCGCAAAATGTTTATTTTTGAA 58.501 29.630 11.82 0.00 42.33 2.69
520 594 9.869844 CATACCGCAAAATGTTTATTTTTGAAA 57.130 25.926 11.82 0.00 42.33 2.69
540 614 9.959749 TTTGAAATAGAAATTTGTACAGTGTCC 57.040 29.630 0.00 0.00 35.41 4.02
548 622 8.621286 AGAAATTTGTACAGTGTCCTTTTACAG 58.379 33.333 0.00 0.00 0.00 2.74
561 635 6.657541 TGTCCTTTTACAGAAAAGTTCACTGT 59.342 34.615 15.65 15.65 46.91 3.55
563 637 8.121086 GTCCTTTTACAGAAAAGTTCACTGTAC 58.879 37.037 16.44 7.70 46.91 2.90
565 639 8.122952 CCTTTTACAGAAAAGTTCACTGTACTG 58.877 37.037 16.44 0.00 46.91 2.74
567 641 7.534085 TTACAGAAAAGTTCACTGTACTGTG 57.466 36.000 22.89 22.89 43.60 3.66
613 690 7.503991 CACAAATGTTCAATGTGTTATTCAGC 58.496 34.615 11.36 0.00 39.60 4.26
614 691 6.363088 ACAAATGTTCAATGTGTTATTCAGCG 59.637 34.615 0.00 0.00 0.00 5.18
615 692 5.627499 ATGTTCAATGTGTTATTCAGCGT 57.373 34.783 0.00 0.00 0.00 5.07
616 693 4.782156 TGTTCAATGTGTTATTCAGCGTG 58.218 39.130 0.00 0.00 0.00 5.34
617 694 3.469899 TCAATGTGTTATTCAGCGTGC 57.530 42.857 0.00 0.00 0.00 5.34
670 759 4.722361 AAAAACCAAGCAAAACTACGGA 57.278 36.364 0.00 0.00 0.00 4.69
671 760 3.703286 AAACCAAGCAAAACTACGGAC 57.297 42.857 0.00 0.00 0.00 4.79
672 761 1.223187 ACCAAGCAAAACTACGGACG 58.777 50.000 0.00 0.00 0.00 4.79
673 762 0.110373 CCAAGCAAAACTACGGACGC 60.110 55.000 0.00 0.00 0.00 5.19
674 763 0.865769 CAAGCAAAACTACGGACGCT 59.134 50.000 0.00 0.00 0.00 5.07
675 764 2.063266 CAAGCAAAACTACGGACGCTA 58.937 47.619 0.00 0.00 0.00 4.26
676 765 1.706443 AGCAAAACTACGGACGCTAC 58.294 50.000 0.00 0.00 0.00 3.58
677 766 1.000060 AGCAAAACTACGGACGCTACA 60.000 47.619 0.00 0.00 0.00 2.74
678 767 1.389106 GCAAAACTACGGACGCTACAG 59.611 52.381 0.00 0.00 0.00 2.74
679 768 1.389106 CAAAACTACGGACGCTACAGC 59.611 52.381 0.00 0.00 37.78 4.40
680 769 0.599558 AAACTACGGACGCTACAGCA 59.400 50.000 1.61 0.00 42.21 4.41
681 770 0.599558 AACTACGGACGCTACAGCAA 59.400 50.000 1.61 0.00 42.21 3.91
682 771 0.599558 ACTACGGACGCTACAGCAAA 59.400 50.000 1.61 0.00 42.21 3.68
683 772 0.989890 CTACGGACGCTACAGCAAAC 59.010 55.000 1.61 0.00 42.21 2.93
684 773 0.388907 TACGGACGCTACAGCAAACC 60.389 55.000 1.61 0.81 42.21 3.27
685 774 1.666553 CGGACGCTACAGCAAACCA 60.667 57.895 1.61 0.00 42.21 3.67
686 775 1.626654 CGGACGCTACAGCAAACCAG 61.627 60.000 1.61 0.00 42.21 4.00
687 776 0.602905 GGACGCTACAGCAAACCAGT 60.603 55.000 1.61 0.00 42.21 4.00
688 777 1.226746 GACGCTACAGCAAACCAGTT 58.773 50.000 1.61 0.00 42.21 3.16
689 778 1.602377 GACGCTACAGCAAACCAGTTT 59.398 47.619 1.61 0.00 42.21 2.66
690 779 2.021457 ACGCTACAGCAAACCAGTTTT 58.979 42.857 1.61 0.00 42.21 2.43
691 780 2.425668 ACGCTACAGCAAACCAGTTTTT 59.574 40.909 1.61 0.00 42.21 1.94
715 804 4.398549 TTTGAGAAATTACAGCGAACCG 57.601 40.909 0.00 0.00 0.00 4.44
716 805 2.343101 TGAGAAATTACAGCGAACCGG 58.657 47.619 0.00 0.00 0.00 5.28
717 806 2.028839 TGAGAAATTACAGCGAACCGGA 60.029 45.455 9.46 0.00 0.00 5.14
718 807 2.603560 GAGAAATTACAGCGAACCGGAG 59.396 50.000 9.46 0.00 0.00 4.63
719 808 2.028385 AGAAATTACAGCGAACCGGAGT 60.028 45.455 9.46 0.00 0.00 3.85
720 809 3.194116 AGAAATTACAGCGAACCGGAGTA 59.806 43.478 9.46 0.00 0.00 2.59
721 810 3.814005 AATTACAGCGAACCGGAGTAT 57.186 42.857 9.46 0.00 0.00 2.12
722 811 2.857592 TTACAGCGAACCGGAGTATC 57.142 50.000 9.46 0.00 0.00 2.24
723 812 1.753930 TACAGCGAACCGGAGTATCA 58.246 50.000 9.46 0.00 36.25 2.15
724 813 0.172803 ACAGCGAACCGGAGTATCAC 59.827 55.000 9.46 0.00 36.25 3.06
725 814 0.456221 CAGCGAACCGGAGTATCACT 59.544 55.000 9.46 0.00 36.25 3.41
726 815 1.135083 CAGCGAACCGGAGTATCACTT 60.135 52.381 9.46 0.00 36.25 3.16
727 816 1.549170 AGCGAACCGGAGTATCACTTT 59.451 47.619 9.46 0.00 36.25 2.66
728 817 1.659098 GCGAACCGGAGTATCACTTTG 59.341 52.381 9.46 0.00 36.25 2.77
729 818 1.659098 CGAACCGGAGTATCACTTTGC 59.341 52.381 9.46 0.00 36.25 3.68
730 819 2.674177 CGAACCGGAGTATCACTTTGCT 60.674 50.000 9.46 0.00 36.25 3.91
731 820 3.428452 CGAACCGGAGTATCACTTTGCTA 60.428 47.826 9.46 0.00 36.25 3.49
732 821 3.521947 ACCGGAGTATCACTTTGCTAC 57.478 47.619 9.46 0.00 36.25 3.58
733 822 2.829720 ACCGGAGTATCACTTTGCTACA 59.170 45.455 9.46 0.00 36.25 2.74
734 823 3.187700 CCGGAGTATCACTTTGCTACAC 58.812 50.000 0.00 0.00 36.25 2.90
735 824 3.119101 CCGGAGTATCACTTTGCTACACT 60.119 47.826 0.00 0.00 36.25 3.55
736 825 4.097437 CCGGAGTATCACTTTGCTACACTA 59.903 45.833 0.00 0.00 36.25 2.74
737 826 5.035443 CGGAGTATCACTTTGCTACACTAC 58.965 45.833 0.00 0.00 36.25 2.73
738 827 5.392703 CGGAGTATCACTTTGCTACACTACA 60.393 44.000 0.00 0.00 36.25 2.74
739 828 5.805994 GGAGTATCACTTTGCTACACTACAC 59.194 44.000 0.00 0.00 36.25 2.90
740 829 6.340962 AGTATCACTTTGCTACACTACACA 57.659 37.500 0.00 0.00 0.00 3.72
741 830 6.755206 AGTATCACTTTGCTACACTACACAA 58.245 36.000 0.00 0.00 0.00 3.33
742 831 7.214381 AGTATCACTTTGCTACACTACACAAA 58.786 34.615 0.00 0.00 0.00 2.83
743 832 6.935741 ATCACTTTGCTACACTACACAAAA 57.064 33.333 0.00 0.00 32.09 2.44
744 833 6.935741 TCACTTTGCTACACTACACAAAAT 57.064 33.333 0.00 0.00 32.09 1.82
745 834 6.724263 TCACTTTGCTACACTACACAAAATG 58.276 36.000 0.00 0.00 32.24 2.32
746 835 6.317642 TCACTTTGCTACACTACACAAAATGT 59.682 34.615 0.00 0.00 46.06 2.71
747 836 6.972328 CACTTTGCTACACTACACAAAATGTT 59.028 34.615 0.00 0.00 43.19 2.71
748 837 7.165812 CACTTTGCTACACTACACAAAATGTTC 59.834 37.037 0.00 0.00 43.19 3.18
749 838 6.935741 TTGCTACACTACACAAAATGTTCT 57.064 33.333 0.00 0.00 43.19 3.01
750 839 8.439993 TTTGCTACACTACACAAAATGTTCTA 57.560 30.769 0.00 0.00 43.19 2.10
792 881 1.606313 AAATGGACCGGCCCAGTTG 60.606 57.895 22.16 0.00 42.19 3.16
795 884 2.075355 ATGGACCGGCCCAGTTGAAA 62.075 55.000 16.91 0.00 39.97 2.69
845 934 2.582436 CACACGGGTCGCCCTAAT 59.418 61.111 12.26 0.00 42.67 1.73
846 935 1.817881 CACACGGGTCGCCCTAATA 59.182 57.895 12.26 0.00 42.67 0.98
847 936 0.391597 CACACGGGTCGCCCTAATAT 59.608 55.000 12.26 0.00 42.67 1.28
911 1012 1.804326 CACGGGTCGCTTAACCTCG 60.804 63.158 0.00 0.00 39.42 4.63
1158 1276 1.004440 GGTGACTTTCGAGCTGGCT 60.004 57.895 0.00 0.00 0.00 4.75
1379 1775 4.880537 CGCCTCCTACCGCTGCTG 62.881 72.222 0.00 0.00 0.00 4.41
1438 1834 2.395690 GCGGCGATCTCAACAACG 59.604 61.111 12.98 0.00 0.00 4.10
1451 1847 1.280206 AACAACGAAGACTACGCCGC 61.280 55.000 0.00 0.00 0.00 6.53
1458 1854 2.814183 AAGACTACGCCGCGGTCTTG 62.814 60.000 26.45 16.57 45.06 3.02
1496 1913 2.350484 CGCGACACACAGAAGACTCTAA 60.350 50.000 0.00 0.00 0.00 2.10
1514 1940 4.744570 TCTAACAGCAAGAAGTACATCGG 58.255 43.478 0.00 0.00 0.00 4.18
1516 1942 1.001974 ACAGCAAGAAGTACATCGGCA 59.998 47.619 16.32 0.00 0.00 5.69
1555 1981 1.656587 TAAGTCTGAGTGGCCATGGT 58.343 50.000 9.72 0.00 0.00 3.55
1571 2003 0.403655 TGGTGCTACAAGATGGCCAA 59.596 50.000 10.96 0.00 32.70 4.52
1572 2004 1.202989 TGGTGCTACAAGATGGCCAAA 60.203 47.619 10.96 0.00 32.70 3.28
1683 2115 0.174162 GCTGGGTCAATCATTGGCAC 59.826 55.000 3.96 0.00 39.69 5.01
1806 2240 1.511464 CGACGATATCTACCCGCGC 60.511 63.158 0.00 0.00 0.00 6.86
1811 2245 2.539263 GATATCTACCCGCGCCCGTC 62.539 65.000 0.00 0.00 0.00 4.79
1879 2313 5.597806 TGAAATCTTGTTCGTGTACTGAGT 58.402 37.500 0.00 0.00 0.00 3.41
2017 2458 4.410883 TCACAGGTTCAAGTTTCCCTAAGA 59.589 41.667 0.00 0.00 0.00 2.10
2217 2658 3.329386 TGAAAAGATGCTCGGTCTTGAG 58.671 45.455 0.00 0.00 36.14 3.02
2269 2710 1.093159 CATCAAGCAGTGGAGAAGGC 58.907 55.000 0.00 0.00 0.00 4.35
2332 2786 7.938563 TTGTTGTTGTTAATCTTGTTATGCC 57.061 32.000 0.00 0.00 0.00 4.40
2333 2787 7.283625 TGTTGTTGTTAATCTTGTTATGCCT 57.716 32.000 0.00 0.00 0.00 4.75
2334 2788 7.144661 TGTTGTTGTTAATCTTGTTATGCCTG 58.855 34.615 0.00 0.00 0.00 4.85
2335 2789 7.013750 TGTTGTTGTTAATCTTGTTATGCCTGA 59.986 33.333 0.00 0.00 0.00 3.86
2336 2790 7.517614 TGTTGTTAATCTTGTTATGCCTGAA 57.482 32.000 0.00 0.00 0.00 3.02
2337 2791 7.367285 TGTTGTTAATCTTGTTATGCCTGAAC 58.633 34.615 0.00 0.00 0.00 3.18
2338 2792 7.230510 TGTTGTTAATCTTGTTATGCCTGAACT 59.769 33.333 0.00 0.00 0.00 3.01
2368 2822 9.014297 CAGGTTGTTTTCCTTACTCTGAATATT 57.986 33.333 0.00 0.00 32.37 1.28
2382 2836 8.618702 ACTCTGAATATTCTGAATAATGGCTG 57.381 34.615 21.18 11.54 35.23 4.85
2433 2887 5.254032 AGAATAGGTCTGGGATTTTTGTCCT 59.746 40.000 0.00 0.00 38.38 3.85
2434 2888 3.903530 AGGTCTGGGATTTTTGTCCTT 57.096 42.857 0.00 0.00 38.38 3.36
2435 2889 6.652205 ATAGGTCTGGGATTTTTGTCCTTA 57.348 37.500 0.00 0.00 38.38 2.69
2436 2890 4.663334 AGGTCTGGGATTTTTGTCCTTAC 58.337 43.478 0.00 0.00 38.38 2.34
2437 2891 4.354087 AGGTCTGGGATTTTTGTCCTTACT 59.646 41.667 0.00 0.00 38.38 2.24
2438 2892 4.700692 GGTCTGGGATTTTTGTCCTTACTC 59.299 45.833 0.00 0.00 38.38 2.59
2439 2893 5.515008 GGTCTGGGATTTTTGTCCTTACTCT 60.515 44.000 0.00 0.00 38.38 3.24
2440 2894 5.412904 GTCTGGGATTTTTGTCCTTACTCTG 59.587 44.000 0.00 0.00 38.38 3.35
2441 2895 5.309543 TCTGGGATTTTTGTCCTTACTCTGA 59.690 40.000 0.00 0.00 38.38 3.27
2442 2896 5.947663 TGGGATTTTTGTCCTTACTCTGAA 58.052 37.500 0.00 0.00 38.38 3.02
2443 2897 6.552008 TGGGATTTTTGTCCTTACTCTGAAT 58.448 36.000 0.00 0.00 38.38 2.57
2444 2898 7.695055 TGGGATTTTTGTCCTTACTCTGAATA 58.305 34.615 0.00 0.00 38.38 1.75
2445 2899 8.336235 TGGGATTTTTGTCCTTACTCTGAATAT 58.664 33.333 0.00 0.00 38.38 1.28
2446 2900 9.190317 GGGATTTTTGTCCTTACTCTGAATATT 57.810 33.333 0.00 0.00 38.38 1.28
2459 2913 7.992754 ACTCTGAATATTCTGAATAATGGCC 57.007 36.000 21.18 0.00 35.23 5.36
2460 2914 7.520798 ACTCTGAATATTCTGAATAATGGCCA 58.479 34.615 21.18 8.56 35.23 5.36
2461 2915 7.664731 ACTCTGAATATTCTGAATAATGGCCAG 59.335 37.037 21.18 14.21 35.23 4.85
2462 2916 7.748677 TCTGAATATTCTGAATAATGGCCAGA 58.251 34.615 19.33 15.75 35.38 3.86
2463 2917 8.388589 TCTGAATATTCTGAATAATGGCCAGAT 58.611 33.333 19.33 4.01 36.88 2.90
2464 2918 8.344446 TGAATATTCTGAATAATGGCCAGATG 57.656 34.615 13.05 0.00 36.88 2.90
2465 2919 6.770746 ATATTCTGAATAATGGCCAGATGC 57.229 37.500 13.05 6.51 36.88 3.91
2466 2920 3.581265 TCTGAATAATGGCCAGATGCA 57.419 42.857 13.05 11.26 43.89 3.96
2467 2921 3.216800 TCTGAATAATGGCCAGATGCAC 58.783 45.455 13.05 1.47 43.89 4.57
2468 2922 1.948834 TGAATAATGGCCAGATGCACG 59.051 47.619 13.05 0.00 43.89 5.34
2469 2923 0.670162 AATAATGGCCAGATGCACGC 59.330 50.000 13.05 0.00 43.89 5.34
2470 2924 0.179009 ATAATGGCCAGATGCACGCT 60.179 50.000 13.05 0.00 43.89 5.07
2471 2925 1.096967 TAATGGCCAGATGCACGCTG 61.097 55.000 13.05 10.64 43.89 5.18
2472 2926 3.633609 ATGGCCAGATGCACGCTGT 62.634 57.895 13.05 0.00 43.89 4.40
2473 2927 3.807538 GGCCAGATGCACGCTGTG 61.808 66.667 15.06 9.10 43.89 3.66
2474 2928 3.052082 GCCAGATGCACGCTGTGT 61.052 61.111 15.06 0.00 40.77 3.72
2475 2929 2.620112 GCCAGATGCACGCTGTGTT 61.620 57.895 15.06 0.00 40.77 3.32
2476 2930 1.499056 CCAGATGCACGCTGTGTTC 59.501 57.895 15.06 7.66 35.75 3.18
2477 2931 1.131218 CAGATGCACGCTGTGTTCG 59.869 57.895 9.64 0.00 35.75 3.95
2478 2932 1.300931 AGATGCACGCTGTGTTCGT 60.301 52.632 9.76 0.00 41.28 3.85
2485 2939 4.374702 GCTGTGTTCGTGCAGCGG 62.375 66.667 8.46 0.00 46.67 5.52
2486 2940 4.374702 CTGTGTTCGTGCAGCGGC 62.375 66.667 0.31 0.31 41.72 6.53
2497 2951 3.614399 GCAGCGGCATAATAGGTCT 57.386 52.632 3.18 0.00 40.72 3.85
2498 2952 1.151668 GCAGCGGCATAATAGGTCTG 58.848 55.000 3.18 0.00 40.72 3.51
2499 2953 1.800805 CAGCGGCATAATAGGTCTGG 58.199 55.000 1.45 0.00 0.00 3.86
2500 2954 0.687354 AGCGGCATAATAGGTCTGGG 59.313 55.000 1.45 0.00 0.00 4.45
2501 2955 0.685097 GCGGCATAATAGGTCTGGGA 59.315 55.000 0.00 0.00 0.00 4.37
2502 2956 1.279271 GCGGCATAATAGGTCTGGGAT 59.721 52.381 0.00 0.00 0.00 3.85
2503 2957 2.290323 GCGGCATAATAGGTCTGGGATT 60.290 50.000 0.00 0.00 0.00 3.01
2504 2958 3.338249 CGGCATAATAGGTCTGGGATTG 58.662 50.000 0.00 0.00 0.00 2.67
2505 2959 3.244561 CGGCATAATAGGTCTGGGATTGT 60.245 47.826 0.00 0.00 0.00 2.71
2506 2960 4.020573 CGGCATAATAGGTCTGGGATTGTA 60.021 45.833 0.00 0.00 0.00 2.41
2507 2961 5.246307 GGCATAATAGGTCTGGGATTGTAC 58.754 45.833 0.00 0.00 0.00 2.90
2508 2962 5.246307 GCATAATAGGTCTGGGATTGTACC 58.754 45.833 0.00 0.00 0.00 3.34
2509 2963 5.013183 GCATAATAGGTCTGGGATTGTACCT 59.987 44.000 0.00 0.00 44.47 3.08
2510 2964 6.465894 GCATAATAGGTCTGGGATTGTACCTT 60.466 42.308 0.00 0.00 42.34 3.50
2540 2994 2.086610 AGTTTGTTCCTGGCCACAAT 57.913 45.000 0.00 0.00 32.96 2.71
2556 3012 1.070786 AATCAGTTCGTGGTGGCGT 59.929 52.632 0.00 0.00 0.00 5.68
2594 3050 4.314740 TCGCAGCCAGTTTGTTATTTTT 57.685 36.364 0.00 0.00 0.00 1.94
2620 3076 9.308318 TGTGTATAAAAGGAAGAAAGCAAAAAC 57.692 29.630 0.00 0.00 0.00 2.43
2625 3081 2.681344 AGGAAGAAAGCAAAAACGACGT 59.319 40.909 0.00 0.00 0.00 4.34
2626 3082 3.872771 AGGAAGAAAGCAAAAACGACGTA 59.127 39.130 0.00 0.00 0.00 3.57
2627 3083 3.964347 GGAAGAAAGCAAAAACGACGTAC 59.036 43.478 0.00 0.00 0.00 3.67
2628 3084 4.260497 GGAAGAAAGCAAAAACGACGTACT 60.260 41.667 0.00 0.00 0.00 2.73
2629 3085 4.448363 AGAAAGCAAAAACGACGTACTC 57.552 40.909 0.00 0.00 0.00 2.59
2630 3086 3.246936 AGAAAGCAAAAACGACGTACTCC 59.753 43.478 0.00 0.00 0.00 3.85
2631 3087 1.505425 AGCAAAAACGACGTACTCCC 58.495 50.000 0.00 0.00 0.00 4.30
2632 3088 1.069668 AGCAAAAACGACGTACTCCCT 59.930 47.619 0.00 0.00 0.00 4.20
2633 3089 1.458445 GCAAAAACGACGTACTCCCTC 59.542 52.381 0.00 0.00 0.00 4.30
2634 3090 2.064014 CAAAAACGACGTACTCCCTCC 58.936 52.381 0.00 0.00 0.00 4.30
2635 3091 0.242017 AAAACGACGTACTCCCTCCG 59.758 55.000 0.00 0.00 0.00 4.63
2636 3092 0.890996 AAACGACGTACTCCCTCCGT 60.891 55.000 0.00 0.00 37.56 4.69
2637 3093 0.890996 AACGACGTACTCCCTCCGTT 60.891 55.000 0.00 2.08 34.51 4.44
2638 3094 1.301677 ACGACGTACTCCCTCCGTTC 61.302 60.000 0.00 0.00 34.51 3.95
2639 3095 1.427020 GACGTACTCCCTCCGTTCG 59.573 63.158 0.00 0.00 34.51 3.95
2640 3096 1.986575 GACGTACTCCCTCCGTTCGG 61.987 65.000 4.74 4.74 34.51 4.30
2641 3097 2.042831 CGTACTCCCTCCGTTCGGT 61.043 63.158 11.04 0.00 0.00 4.69
2642 3098 0.744414 CGTACTCCCTCCGTTCGGTA 60.744 60.000 11.04 0.00 0.00 4.02
2643 3099 1.685148 GTACTCCCTCCGTTCGGTAT 58.315 55.000 11.04 0.00 0.00 2.73
2644 3100 2.027385 GTACTCCCTCCGTTCGGTATT 58.973 52.381 11.04 0.00 0.00 1.89
2645 3101 2.442236 ACTCCCTCCGTTCGGTATTA 57.558 50.000 11.04 0.00 0.00 0.98
2646 3102 2.027385 ACTCCCTCCGTTCGGTATTAC 58.973 52.381 11.04 0.00 0.00 1.89
2647 3103 2.305009 CTCCCTCCGTTCGGTATTACT 58.695 52.381 11.04 0.00 0.00 2.24
2648 3104 2.692041 CTCCCTCCGTTCGGTATTACTT 59.308 50.000 11.04 0.00 0.00 2.24
2649 3105 2.428171 TCCCTCCGTTCGGTATTACTTG 59.572 50.000 11.04 0.00 0.00 3.16
2650 3106 2.167075 CCCTCCGTTCGGTATTACTTGT 59.833 50.000 11.04 0.00 0.00 3.16
2651 3107 3.442100 CCTCCGTTCGGTATTACTTGTC 58.558 50.000 11.04 0.00 0.00 3.18
2652 3108 3.119388 CCTCCGTTCGGTATTACTTGTCA 60.119 47.826 11.04 0.00 0.00 3.58
2653 3109 3.836949 TCCGTTCGGTATTACTTGTCAC 58.163 45.455 11.04 0.00 0.00 3.67
2654 3110 3.255395 TCCGTTCGGTATTACTTGTCACA 59.745 43.478 11.04 0.00 0.00 3.58
2655 3111 3.989167 CCGTTCGGTATTACTTGTCACAA 59.011 43.478 2.82 0.00 0.00 3.33
2656 3112 4.448395 CCGTTCGGTATTACTTGTCACAAA 59.552 41.667 2.82 0.00 0.00 2.83
2657 3113 5.050227 CCGTTCGGTATTACTTGTCACAAAA 60.050 40.000 2.82 0.00 0.00 2.44
2658 3114 6.420588 CGTTCGGTATTACTTGTCACAAAAA 58.579 36.000 0.00 0.00 0.00 1.94
2659 3115 7.073265 CGTTCGGTATTACTTGTCACAAAAAT 58.927 34.615 0.00 0.00 0.00 1.82
2660 3116 7.059033 CGTTCGGTATTACTTGTCACAAAAATG 59.941 37.037 7.68 0.00 0.00 2.32
2661 3117 6.904498 TCGGTATTACTTGTCACAAAAATGG 58.096 36.000 7.68 0.00 0.00 3.16
2662 3118 6.711194 TCGGTATTACTTGTCACAAAAATGGA 59.289 34.615 7.68 1.93 0.00 3.41
2663 3119 7.392113 TCGGTATTACTTGTCACAAAAATGGAT 59.608 33.333 7.68 0.00 0.00 3.41
2664 3120 7.484641 CGGTATTACTTGTCACAAAAATGGATG 59.515 37.037 7.68 0.00 0.00 3.51
2665 3121 8.303876 GGTATTACTTGTCACAAAAATGGATGT 58.696 33.333 7.68 0.00 0.00 3.06
2669 3125 7.765695 ACTTGTCACAAAAATGGATGTATCT 57.234 32.000 0.00 0.00 0.00 1.98
2670 3126 8.862325 ACTTGTCACAAAAATGGATGTATCTA 57.138 30.769 0.00 0.00 0.00 1.98
2671 3127 8.730680 ACTTGTCACAAAAATGGATGTATCTAC 58.269 33.333 0.00 0.00 0.00 2.59
2672 3128 8.628630 TTGTCACAAAAATGGATGTATCTACA 57.371 30.769 0.00 0.00 40.98 2.74
2673 3129 8.628630 TGTCACAAAAATGGATGTATCTACAA 57.371 30.769 0.00 0.00 39.99 2.41
2674 3130 8.511321 TGTCACAAAAATGGATGTATCTACAAC 58.489 33.333 0.00 0.00 39.99 3.32
2675 3131 8.730680 GTCACAAAAATGGATGTATCTACAACT 58.269 33.333 0.00 0.00 39.99 3.16
2676 3132 9.952030 TCACAAAAATGGATGTATCTACAACTA 57.048 29.630 0.00 0.00 39.99 2.24
2707 3163 9.469807 ACATCTAGATACATTCATTTCTTCGAC 57.530 33.333 4.54 0.00 0.00 4.20
2708 3164 8.634265 CATCTAGATACATTCATTTCTTCGACG 58.366 37.037 4.54 0.00 0.00 5.12
2709 3165 7.927048 TCTAGATACATTCATTTCTTCGACGA 58.073 34.615 0.00 0.00 0.00 4.20
2710 3166 8.070769 TCTAGATACATTCATTTCTTCGACGAG 58.929 37.037 0.00 0.00 0.00 4.18
2711 3167 6.565234 AGATACATTCATTTCTTCGACGAGT 58.435 36.000 0.00 0.00 0.00 4.18
2712 3168 7.704271 AGATACATTCATTTCTTCGACGAGTA 58.296 34.615 0.00 0.00 0.00 2.59
2713 3169 8.188799 AGATACATTCATTTCTTCGACGAGTAA 58.811 33.333 0.00 0.00 0.00 2.24
2714 3170 8.873215 ATACATTCATTTCTTCGACGAGTAAT 57.127 30.769 0.00 0.00 0.00 1.89
2715 3171 7.596749 ACATTCATTTCTTCGACGAGTAATT 57.403 32.000 0.00 0.00 0.00 1.40
2716 3172 7.676393 ACATTCATTTCTTCGACGAGTAATTC 58.324 34.615 0.00 0.00 0.00 2.17
2717 3173 6.642683 TTCATTTCTTCGACGAGTAATTCC 57.357 37.500 0.00 0.00 0.00 3.01
2718 3174 4.796830 TCATTTCTTCGACGAGTAATTCCG 59.203 41.667 0.00 0.00 0.00 4.30
2719 3175 4.424061 TTTCTTCGACGAGTAATTCCGA 57.576 40.909 0.00 0.00 0.00 4.55
2720 3176 4.424061 TTCTTCGACGAGTAATTCCGAA 57.576 40.909 0.00 0.00 37.61 4.30
2721 3177 3.751621 TCTTCGACGAGTAATTCCGAAC 58.248 45.455 0.00 0.00 35.71 3.95
2722 3178 2.163826 TCGACGAGTAATTCCGAACG 57.836 50.000 0.00 0.00 0.00 3.95
2723 3179 1.186030 CGACGAGTAATTCCGAACGG 58.814 55.000 6.94 6.94 0.00 4.44
2724 3180 1.202065 CGACGAGTAATTCCGAACGGA 60.202 52.381 12.04 12.04 43.52 4.69
2725 3181 2.448219 GACGAGTAATTCCGAACGGAG 58.552 52.381 15.34 5.60 46.06 4.63
2726 3182 1.133790 ACGAGTAATTCCGAACGGAGG 59.866 52.381 15.34 4.28 46.06 4.30
2727 3183 1.535437 CGAGTAATTCCGAACGGAGGG 60.535 57.143 15.34 0.00 46.06 4.30
2728 3184 1.753073 GAGTAATTCCGAACGGAGGGA 59.247 52.381 15.34 2.49 46.06 4.20
2729 3185 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2730 3186 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
2764 3220 4.246458 GTCGCAAAAATCCTACTGTCTCT 58.754 43.478 0.00 0.00 0.00 3.10
2766 3222 5.179555 GTCGCAAAAATCCTACTGTCTCTTT 59.820 40.000 0.00 0.00 0.00 2.52
2770 3226 6.207614 GCAAAAATCCTACTGTCTCTTTCCTT 59.792 38.462 0.00 0.00 0.00 3.36
2778 3234 3.181461 ACTGTCTCTTTCCTTGAGTGTGG 60.181 47.826 0.00 0.00 33.59 4.17
2780 3236 3.199946 TGTCTCTTTCCTTGAGTGTGGTT 59.800 43.478 0.00 0.00 33.59 3.67
2792 3249 0.946221 GTGTGGTTCCTGTCGCTCTG 60.946 60.000 0.00 0.00 0.00 3.35
2821 3278 4.141846 CGACTCTAGCCAATATGCCCATAT 60.142 45.833 0.00 0.00 35.63 1.78
2822 3279 5.069119 CGACTCTAGCCAATATGCCCATATA 59.931 44.000 1.49 0.00 33.86 0.86
2873 3330 8.693542 ATTGTTGCTGATAAAATAGAAACTGC 57.306 30.769 0.00 0.00 34.25 4.40
2905 3367 9.831737 CTGGATGAAGAAAACTTACACAATAAG 57.168 33.333 0.00 0.00 0.00 1.73
2941 3410 6.238022 GGTGGTACGTTTTCAAGCATATAGAC 60.238 42.308 0.00 0.00 0.00 2.59
2942 3411 6.311935 GTGGTACGTTTTCAAGCATATAGACA 59.688 38.462 0.00 0.00 0.00 3.41
2977 3450 5.904362 AGATGTCCTTAAACTCATTTGGC 57.096 39.130 0.00 0.00 0.00 4.52
2991 3464 2.496899 TTTGGCTTGAGGAGTGGATC 57.503 50.000 0.00 0.00 0.00 3.36
3053 3547 3.449377 GCAAGGCTTTCTCTCCTACTAGT 59.551 47.826 0.00 0.00 31.24 2.57
3054 3548 4.645588 GCAAGGCTTTCTCTCCTACTAGTA 59.354 45.833 0.00 1.89 31.24 1.82
3055 3549 5.450826 GCAAGGCTTTCTCTCCTACTAGTAC 60.451 48.000 0.00 0.00 31.24 2.73
3056 3550 5.720486 AGGCTTTCTCTCCTACTAGTACT 57.280 43.478 0.00 0.00 0.00 2.73
3057 3551 5.442391 AGGCTTTCTCTCCTACTAGTACTG 58.558 45.833 5.39 0.00 0.00 2.74
3106 3600 4.844349 TTCCAGAGCTATAAACTTGCCT 57.156 40.909 0.00 0.00 0.00 4.75
3107 3601 4.408182 TCCAGAGCTATAAACTTGCCTC 57.592 45.455 0.00 0.00 0.00 4.70
3110 3604 4.383552 CCAGAGCTATAAACTTGCCTCAGT 60.384 45.833 0.00 0.00 0.00 3.41
3113 3607 6.256757 CAGAGCTATAAACTTGCCTCAGTAAC 59.743 42.308 0.00 0.00 0.00 2.50
3114 3608 5.109903 AGCTATAAACTTGCCTCAGTAACG 58.890 41.667 0.00 0.00 0.00 3.18
3115 3609 4.868734 GCTATAAACTTGCCTCAGTAACGT 59.131 41.667 0.00 0.00 0.00 3.99
3116 3610 5.220416 GCTATAAACTTGCCTCAGTAACGTG 60.220 44.000 0.00 0.00 0.00 4.49
3117 3611 1.878953 AACTTGCCTCAGTAACGTGG 58.121 50.000 0.00 0.00 0.00 4.94
3118 3612 1.045407 ACTTGCCTCAGTAACGTGGA 58.955 50.000 0.00 0.00 0.00 4.02
3119 3613 1.000955 ACTTGCCTCAGTAACGTGGAG 59.999 52.381 0.00 0.00 0.00 3.86
3120 3614 1.000955 CTTGCCTCAGTAACGTGGAGT 59.999 52.381 0.00 0.00 0.00 3.85
3131 3690 1.289066 CGTGGAGTCGTGGACACAT 59.711 57.895 3.12 0.00 34.60 3.21
3209 3769 4.010349 GCCCTCTGTTAACTTTGCTATGT 58.990 43.478 7.22 0.00 0.00 2.29
3248 3808 2.794103 AGCTTGTGTGTATGCAATGGA 58.206 42.857 0.00 0.00 0.00 3.41
3273 3833 4.690748 CAGTGAAGTTGGTAGTGGTACATG 59.309 45.833 0.00 0.00 44.52 3.21
3274 3834 4.591498 AGTGAAGTTGGTAGTGGTACATGA 59.409 41.667 0.00 0.00 44.52 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.555262 TCTTGCCCGATTCAACAAATTTC 58.445 39.130 0.00 0.00 0.00 2.17
9 10 0.871722 CGTTCTTGCCCGATTCAACA 59.128 50.000 0.00 0.00 0.00 3.33
12 13 1.376683 CCCGTTCTTGCCCGATTCA 60.377 57.895 0.00 0.00 0.00 2.57
18 19 0.891904 TTTAGTGCCCGTTCTTGCCC 60.892 55.000 0.00 0.00 0.00 5.36
19 20 0.521735 CTTTAGTGCCCGTTCTTGCC 59.478 55.000 0.00 0.00 0.00 4.52
31 32 1.680105 CGTACACGGCGCCTTTAGTG 61.680 60.000 26.68 25.63 40.17 2.74
42 43 0.456312 GGTTGAGAGCTCGTACACGG 60.456 60.000 8.37 0.00 40.29 4.94
46 47 1.071567 GTGCGGTTGAGAGCTCGTAC 61.072 60.000 8.37 7.66 0.00 3.67
49 50 2.811317 GGTGCGGTTGAGAGCTCG 60.811 66.667 8.37 0.00 0.00 5.03
71 72 0.463654 TAGGATTGGCCGATGTGTGC 60.464 55.000 11.28 0.00 43.43 4.57
72 73 2.260844 ATAGGATTGGCCGATGTGTG 57.739 50.000 11.28 0.00 43.43 3.82
77 78 3.632145 GTGACAAAATAGGATTGGCCGAT 59.368 43.478 4.69 4.69 43.43 4.18
79 80 2.099098 GGTGACAAAATAGGATTGGCCG 59.901 50.000 0.00 0.00 43.43 6.13
108 109 6.626623 GCAGGAAAACATCATGACTATTTGCT 60.627 38.462 13.60 13.60 42.41 3.91
122 124 4.751767 TGGAAAAACTGCAGGAAAACAT 57.248 36.364 19.93 0.00 0.00 2.71
123 125 4.543590 TTGGAAAAACTGCAGGAAAACA 57.456 36.364 19.93 6.91 0.00 2.83
124 126 6.435430 AAATTGGAAAAACTGCAGGAAAAC 57.565 33.333 19.93 6.31 0.00 2.43
126 128 6.094742 GGAAAAATTGGAAAAACTGCAGGAAA 59.905 34.615 19.93 1.77 0.00 3.13
128 130 5.104569 AGGAAAAATTGGAAAAACTGCAGGA 60.105 36.000 19.93 0.00 0.00 3.86
129 131 5.125356 AGGAAAAATTGGAAAAACTGCAGG 58.875 37.500 19.93 0.00 0.00 4.85
130 132 6.682423 AAGGAAAAATTGGAAAAACTGCAG 57.318 33.333 13.48 13.48 0.00 4.41
131 133 7.040132 ACAAAAGGAAAAATTGGAAAAACTGCA 60.040 29.630 0.00 0.00 0.00 4.41
132 134 7.273164 CACAAAAGGAAAAATTGGAAAAACTGC 59.727 33.333 0.00 0.00 0.00 4.40
133 135 8.296000 ACACAAAAGGAAAAATTGGAAAAACTG 58.704 29.630 0.00 0.00 0.00 3.16
134 136 8.402798 ACACAAAAGGAAAAATTGGAAAAACT 57.597 26.923 0.00 0.00 0.00 2.66
135 137 9.469807 AAACACAAAAGGAAAAATTGGAAAAAC 57.530 25.926 0.00 0.00 0.00 2.43
137 139 9.684448 GAAAACACAAAAGGAAAAATTGGAAAA 57.316 25.926 0.00 0.00 0.00 2.29
138 140 9.072375 AGAAAACACAAAAGGAAAAATTGGAAA 57.928 25.926 0.00 0.00 0.00 3.13
139 141 8.628630 AGAAAACACAAAAGGAAAAATTGGAA 57.371 26.923 0.00 0.00 0.00 3.53
140 142 8.510505 CAAGAAAACACAAAAGGAAAAATTGGA 58.489 29.630 0.00 0.00 0.00 3.53
141 143 7.273164 GCAAGAAAACACAAAAGGAAAAATTGG 59.727 33.333 0.00 0.00 0.00 3.16
143 145 8.109705 AGCAAGAAAACACAAAAGGAAAAATT 57.890 26.923 0.00 0.00 0.00 1.82
145 147 7.308288 GGAAGCAAGAAAACACAAAAGGAAAAA 60.308 33.333 0.00 0.00 0.00 1.94
148 150 5.175127 GGAAGCAAGAAAACACAAAAGGAA 58.825 37.500 0.00 0.00 0.00 3.36
149 151 4.221703 TGGAAGCAAGAAAACACAAAAGGA 59.778 37.500 0.00 0.00 0.00 3.36
150 152 4.502962 TGGAAGCAAGAAAACACAAAAGG 58.497 39.130 0.00 0.00 0.00 3.11
151 153 6.092533 ACAATGGAAGCAAGAAAACACAAAAG 59.907 34.615 0.00 0.00 0.00 2.27
154 220 5.083533 ACAATGGAAGCAAGAAAACACAA 57.916 34.783 0.00 0.00 0.00 3.33
163 229 7.951530 AAATAGTGAAAACAATGGAAGCAAG 57.048 32.000 0.00 0.00 0.00 4.01
187 253 7.388224 GGAACAAAACCACTAAAAACCAGAAAA 59.612 33.333 0.00 0.00 0.00 2.29
189 255 6.399743 GGAACAAAACCACTAAAAACCAGAA 58.600 36.000 0.00 0.00 0.00 3.02
192 258 4.381718 CCGGAACAAAACCACTAAAAACCA 60.382 41.667 0.00 0.00 0.00 3.67
193 259 4.114073 CCGGAACAAAACCACTAAAAACC 58.886 43.478 0.00 0.00 0.00 3.27
199 265 5.593502 ACAAATAACCGGAACAAAACCACTA 59.406 36.000 9.46 0.00 0.00 2.74
201 267 4.684877 ACAAATAACCGGAACAAAACCAC 58.315 39.130 9.46 0.00 0.00 4.16
213 279 7.297229 ACCAAAACAGAAAAACAAATAACCG 57.703 32.000 0.00 0.00 0.00 4.44
222 289 7.604927 AGGAAAAAGGTACCAAAACAGAAAAAC 59.395 33.333 15.94 0.00 0.00 2.43
350 424 9.986833 ATTTTTGTAATGCAAAGTGAACTTTTC 57.013 25.926 5.70 2.40 46.40 2.29
380 454 9.650371 CGATGAATGATTTTGTAATACACGATT 57.350 29.630 0.00 0.00 0.00 3.34
426 500 6.267471 ACACAATGGTCATTTTGGAGTACATT 59.733 34.615 12.58 0.00 33.91 2.71
429 503 5.705609 ACACAATGGTCATTTTGGAGTAC 57.294 39.130 12.58 0.00 33.91 2.73
464 538 9.839817 TGGACATTTTCTTAATATACGATGGAA 57.160 29.630 0.00 0.00 0.00 3.53
465 539 9.839817 TTGGACATTTTCTTAATATACGATGGA 57.160 29.630 0.00 0.00 0.00 3.41
466 540 9.878599 GTTGGACATTTTCTTAATATACGATGG 57.121 33.333 0.00 0.00 0.00 3.51
468 542 9.063615 GGGTTGGACATTTTCTTAATATACGAT 57.936 33.333 0.00 0.00 0.00 3.73
469 543 8.047911 TGGGTTGGACATTTTCTTAATATACGA 58.952 33.333 0.00 0.00 0.00 3.43
470 544 8.215926 TGGGTTGGACATTTTCTTAATATACG 57.784 34.615 0.00 0.00 0.00 3.06
484 558 0.329931 TTGCGGTATGGGTTGGACAT 59.670 50.000 0.00 0.00 0.00 3.06
488 562 1.548269 ACATTTTGCGGTATGGGTTGG 59.452 47.619 0.00 0.00 0.00 3.77
493 567 8.023050 TCAAAAATAAACATTTTGCGGTATGG 57.977 30.769 6.82 0.00 43.88 2.74
494 568 9.869844 TTTCAAAAATAAACATTTTGCGGTATG 57.130 25.926 6.82 0.00 43.88 2.39
514 588 9.959749 GGACACTGTACAAATTTCTATTTCAAA 57.040 29.630 0.00 0.00 31.63 2.69
516 590 8.918202 AGGACACTGTACAAATTTCTATTTCA 57.082 30.769 0.00 0.00 31.63 2.69
543 617 7.324935 TCACAGTACAGTGAACTTTTCTGTAA 58.675 34.615 17.73 0.00 44.92 2.41
545 619 5.730550 TCACAGTACAGTGAACTTTTCTGT 58.269 37.500 17.73 3.80 44.92 3.41
603 680 7.671495 ATATGAATATGCACGCTGAATAACA 57.329 32.000 0.00 0.00 0.00 2.41
606 683 8.782144 TGAAAATATGAATATGCACGCTGAATA 58.218 29.630 0.00 0.00 0.00 1.75
607 684 7.592533 GTGAAAATATGAATATGCACGCTGAAT 59.407 33.333 0.00 0.00 0.00 2.57
609 686 6.038050 TGTGAAAATATGAATATGCACGCTGA 59.962 34.615 0.00 0.00 0.00 4.26
610 687 6.200808 TGTGAAAATATGAATATGCACGCTG 58.799 36.000 0.00 0.00 0.00 5.18
612 689 7.448588 TTTGTGAAAATATGAATATGCACGC 57.551 32.000 0.00 0.00 0.00 5.34
613 690 9.838163 CATTTTGTGAAAATATGAATATGCACG 57.162 29.630 0.00 0.00 38.97 5.34
649 738 4.426416 GTCCGTAGTTTTGCTTGGTTTTT 58.574 39.130 0.00 0.00 0.00 1.94
650 739 3.487879 CGTCCGTAGTTTTGCTTGGTTTT 60.488 43.478 0.00 0.00 0.00 2.43
651 740 2.032426 CGTCCGTAGTTTTGCTTGGTTT 59.968 45.455 0.00 0.00 0.00 3.27
652 741 1.600485 CGTCCGTAGTTTTGCTTGGTT 59.400 47.619 0.00 0.00 0.00 3.67
653 742 1.223187 CGTCCGTAGTTTTGCTTGGT 58.777 50.000 0.00 0.00 0.00 3.67
654 743 0.110373 GCGTCCGTAGTTTTGCTTGG 60.110 55.000 0.00 0.00 0.00 3.61
655 744 0.865769 AGCGTCCGTAGTTTTGCTTG 59.134 50.000 0.00 0.00 0.00 4.01
656 745 2.064014 GTAGCGTCCGTAGTTTTGCTT 58.936 47.619 0.00 0.00 34.08 3.91
657 746 1.000060 TGTAGCGTCCGTAGTTTTGCT 60.000 47.619 0.00 0.00 36.51 3.91
658 747 1.389106 CTGTAGCGTCCGTAGTTTTGC 59.611 52.381 0.00 0.00 0.00 3.68
659 748 1.389106 GCTGTAGCGTCCGTAGTTTTG 59.611 52.381 0.00 0.00 0.00 2.44
660 749 1.000060 TGCTGTAGCGTCCGTAGTTTT 60.000 47.619 0.00 0.00 45.83 2.43
661 750 0.599558 TGCTGTAGCGTCCGTAGTTT 59.400 50.000 0.00 0.00 45.83 2.66
662 751 0.599558 TTGCTGTAGCGTCCGTAGTT 59.400 50.000 0.00 0.00 45.83 2.24
663 752 0.599558 TTTGCTGTAGCGTCCGTAGT 59.400 50.000 0.00 0.00 45.83 2.73
664 753 0.989890 GTTTGCTGTAGCGTCCGTAG 59.010 55.000 0.00 0.00 45.83 3.51
665 754 0.388907 GGTTTGCTGTAGCGTCCGTA 60.389 55.000 0.00 0.00 45.83 4.02
666 755 1.666872 GGTTTGCTGTAGCGTCCGT 60.667 57.895 0.00 0.00 45.83 4.69
667 756 1.626654 CTGGTTTGCTGTAGCGTCCG 61.627 60.000 0.00 0.00 45.83 4.79
668 757 0.602905 ACTGGTTTGCTGTAGCGTCC 60.603 55.000 0.00 2.71 45.83 4.79
669 758 1.226746 AACTGGTTTGCTGTAGCGTC 58.773 50.000 0.00 0.00 45.83 5.19
670 759 1.675552 AAACTGGTTTGCTGTAGCGT 58.324 45.000 0.00 0.00 45.83 5.07
671 760 2.774439 AAAACTGGTTTGCTGTAGCG 57.226 45.000 0.00 0.00 45.83 4.26
692 781 5.209240 CGGTTCGCTGTAATTTCTCAAAAA 58.791 37.500 0.00 0.00 0.00 1.94
693 782 4.319911 CCGGTTCGCTGTAATTTCTCAAAA 60.320 41.667 0.00 0.00 0.00 2.44
694 783 3.187637 CCGGTTCGCTGTAATTTCTCAAA 59.812 43.478 0.00 0.00 0.00 2.69
695 784 2.739913 CCGGTTCGCTGTAATTTCTCAA 59.260 45.455 0.00 0.00 0.00 3.02
696 785 2.028839 TCCGGTTCGCTGTAATTTCTCA 60.029 45.455 0.00 0.00 0.00 3.27
697 786 2.603560 CTCCGGTTCGCTGTAATTTCTC 59.396 50.000 0.00 0.00 0.00 2.87
698 787 2.028385 ACTCCGGTTCGCTGTAATTTCT 60.028 45.455 0.00 0.00 0.00 2.52
699 788 2.344025 ACTCCGGTTCGCTGTAATTTC 58.656 47.619 0.00 0.00 0.00 2.17
700 789 2.467566 ACTCCGGTTCGCTGTAATTT 57.532 45.000 0.00 0.00 0.00 1.82
701 790 3.131577 TGATACTCCGGTTCGCTGTAATT 59.868 43.478 0.00 0.00 0.00 1.40
702 791 2.691526 TGATACTCCGGTTCGCTGTAAT 59.308 45.455 0.00 0.00 0.00 1.89
703 792 2.093890 TGATACTCCGGTTCGCTGTAA 58.906 47.619 0.00 0.00 0.00 2.41
704 793 1.402968 GTGATACTCCGGTTCGCTGTA 59.597 52.381 0.00 0.00 0.00 2.74
705 794 0.172803 GTGATACTCCGGTTCGCTGT 59.827 55.000 0.00 0.00 0.00 4.40
706 795 0.456221 AGTGATACTCCGGTTCGCTG 59.544 55.000 0.00 0.00 0.00 5.18
707 796 1.183549 AAGTGATACTCCGGTTCGCT 58.816 50.000 0.00 4.08 0.00 4.93
708 797 1.659098 CAAAGTGATACTCCGGTTCGC 59.341 52.381 0.00 1.64 0.00 4.70
709 798 1.659098 GCAAAGTGATACTCCGGTTCG 59.341 52.381 0.00 0.00 0.00 3.95
710 799 2.973945 AGCAAAGTGATACTCCGGTTC 58.026 47.619 0.00 0.00 0.00 3.62
711 800 3.259876 TGTAGCAAAGTGATACTCCGGTT 59.740 43.478 0.00 0.00 39.74 4.44
712 801 2.829720 TGTAGCAAAGTGATACTCCGGT 59.170 45.455 0.00 0.00 39.74 5.28
713 802 3.119101 AGTGTAGCAAAGTGATACTCCGG 60.119 47.826 0.00 0.00 39.74 5.14
714 803 4.111375 AGTGTAGCAAAGTGATACTCCG 57.889 45.455 5.38 0.00 39.74 4.63
715 804 5.805994 GTGTAGTGTAGCAAAGTGATACTCC 59.194 44.000 5.38 0.00 39.74 3.85
716 805 6.387465 TGTGTAGTGTAGCAAAGTGATACTC 58.613 40.000 5.38 2.13 39.74 2.59
717 806 6.340962 TGTGTAGTGTAGCAAAGTGATACT 57.659 37.500 5.38 0.00 39.74 2.12
718 807 7.416154 TTTGTGTAGTGTAGCAAAGTGATAC 57.584 36.000 0.00 0.00 39.50 2.24
719 808 8.503196 CATTTTGTGTAGTGTAGCAAAGTGATA 58.497 33.333 0.00 0.00 39.35 2.15
720 809 6.935741 TTTTGTGTAGTGTAGCAAAGTGAT 57.064 33.333 0.00 0.00 33.25 3.06
721 810 6.317642 ACATTTTGTGTAGTGTAGCAAAGTGA 59.682 34.615 14.85 0.00 39.35 3.41
722 811 6.494842 ACATTTTGTGTAGTGTAGCAAAGTG 58.505 36.000 0.00 0.00 41.27 3.16
723 812 6.693315 ACATTTTGTGTAGTGTAGCAAAGT 57.307 33.333 0.00 0.00 39.91 2.66
724 813 7.417612 AGAACATTTTGTGTAGTGTAGCAAAG 58.582 34.615 0.00 0.00 41.14 2.77
725 814 7.328277 AGAACATTTTGTGTAGTGTAGCAAA 57.672 32.000 0.00 0.00 41.14 3.68
726 815 6.935741 AGAACATTTTGTGTAGTGTAGCAA 57.064 33.333 0.00 0.00 41.14 3.91
727 816 6.987404 TGTAGAACATTTTGTGTAGTGTAGCA 59.013 34.615 0.00 0.00 41.14 3.49
728 817 7.416154 TGTAGAACATTTTGTGTAGTGTAGC 57.584 36.000 0.00 0.00 41.14 3.58
731 820 9.944376 AGATATGTAGAACATTTTGTGTAGTGT 57.056 29.630 0.00 0.00 41.14 3.55
922 1023 0.523968 TTGGTAGCGACGATGCGTAC 60.524 55.000 0.00 0.00 41.37 3.67
1173 1291 1.372997 GTGGACGAAGCAGCGAGAA 60.373 57.895 5.21 0.00 34.83 2.87
1438 1834 2.539263 AAGACCGCGGCGTAGTCTTC 62.539 60.000 28.91 12.96 45.37 2.87
1485 1902 5.799827 ACTTCTTGCTGTTAGAGTCTTCT 57.200 39.130 0.00 0.00 37.46 2.85
1496 1913 1.001974 TGCCGATGTACTTCTTGCTGT 59.998 47.619 16.00 0.00 0.00 4.40
1539 1965 2.042831 GCACCATGGCCACTCAGAC 61.043 63.158 8.16 0.00 0.00 3.51
1555 1981 2.423185 CGATTTTGGCCATCTTGTAGCA 59.577 45.455 6.09 0.00 0.00 3.49
1571 2003 1.176527 CTTGGTGTCCATGGCGATTT 58.823 50.000 6.96 0.00 31.53 2.17
1572 2004 0.327924 TCTTGGTGTCCATGGCGATT 59.672 50.000 6.96 0.00 31.53 3.34
1845 2279 5.615544 CGAACAAGATTTCAGCTCAACGAAT 60.616 40.000 0.00 0.00 0.00 3.34
1879 2313 0.400213 ACCCCTTTCTCATTGCGTGA 59.600 50.000 0.00 0.00 35.05 4.35
1968 2402 3.792401 CACGTTATCAGCCTTGATGGTA 58.208 45.455 0.00 0.00 43.76 3.25
1971 2405 1.331756 GGCACGTTATCAGCCTTGATG 59.668 52.381 6.60 0.00 43.76 3.07
1972 2406 1.668419 GGCACGTTATCAGCCTTGAT 58.332 50.000 6.60 0.00 45.77 2.57
2017 2458 0.839946 AACCTCTTGCCAGCCGATAT 59.160 50.000 0.00 0.00 0.00 1.63
2103 2544 1.414181 CGGATGTCCAGTCTAGCCATT 59.586 52.381 0.00 0.00 35.14 3.16
2217 2658 1.128692 GCACACTGAACATAAGTCGGC 59.871 52.381 0.00 0.00 0.00 5.54
2269 2710 0.176680 CAGTGTCCCCTTCCTCATCG 59.823 60.000 0.00 0.00 0.00 3.84
2333 2787 4.340617 AGGAAAACAACCTGACAAGTTCA 58.659 39.130 0.00 0.00 36.30 3.18
2334 2788 4.983671 AGGAAAACAACCTGACAAGTTC 57.016 40.909 0.00 0.00 36.30 3.01
2335 2789 5.949952 AGTAAGGAAAACAACCTGACAAGTT 59.050 36.000 0.00 0.00 40.42 2.66
2336 2790 5.506708 AGTAAGGAAAACAACCTGACAAGT 58.493 37.500 0.00 0.00 40.42 3.16
2337 2791 5.823045 AGAGTAAGGAAAACAACCTGACAAG 59.177 40.000 0.00 0.00 40.42 3.16
2338 2792 5.588648 CAGAGTAAGGAAAACAACCTGACAA 59.411 40.000 0.00 0.00 40.42 3.18
2368 2822 1.845791 TGCCTCCAGCCATTATTCAGA 59.154 47.619 0.00 0.00 42.71 3.27
2382 2836 3.414700 CGAACACAGCGTGCCTCC 61.415 66.667 8.31 0.00 36.98 4.30
2433 2887 9.507329 GGCCATTATTCAGAATATTCAGAGTAA 57.493 33.333 20.49 20.49 32.49 2.24
2434 2888 8.659527 TGGCCATTATTCAGAATATTCAGAGTA 58.340 33.333 17.56 12.53 0.00 2.59
2435 2889 7.520798 TGGCCATTATTCAGAATATTCAGAGT 58.479 34.615 17.56 13.47 0.00 3.24
2436 2890 7.881751 TCTGGCCATTATTCAGAATATTCAGAG 59.118 37.037 17.56 7.15 34.97 3.35
2437 2891 7.748677 TCTGGCCATTATTCAGAATATTCAGA 58.251 34.615 17.56 12.04 34.97 3.27
2438 2892 7.991084 TCTGGCCATTATTCAGAATATTCAG 57.009 36.000 17.56 9.77 34.97 3.02
2439 2893 7.094075 GCATCTGGCCATTATTCAGAATATTCA 60.094 37.037 17.56 0.00 40.37 2.57
2440 2894 7.094075 TGCATCTGGCCATTATTCAGAATATTC 60.094 37.037 5.51 7.41 43.89 1.75
2441 2895 6.722590 TGCATCTGGCCATTATTCAGAATATT 59.277 34.615 5.51 0.00 43.89 1.28
2442 2896 6.152323 GTGCATCTGGCCATTATTCAGAATAT 59.848 38.462 5.51 0.00 43.89 1.28
2443 2897 5.474532 GTGCATCTGGCCATTATTCAGAATA 59.525 40.000 5.51 0.00 43.89 1.75
2444 2898 4.280174 GTGCATCTGGCCATTATTCAGAAT 59.720 41.667 5.51 0.20 43.89 2.40
2445 2899 3.633525 GTGCATCTGGCCATTATTCAGAA 59.366 43.478 5.51 0.00 43.89 3.02
2446 2900 3.216800 GTGCATCTGGCCATTATTCAGA 58.783 45.455 5.51 0.00 43.89 3.27
2447 2901 2.031420 CGTGCATCTGGCCATTATTCAG 60.031 50.000 5.51 0.00 43.89 3.02
2448 2902 1.948834 CGTGCATCTGGCCATTATTCA 59.051 47.619 5.51 0.53 43.89 2.57
2449 2903 1.335324 GCGTGCATCTGGCCATTATTC 60.335 52.381 5.51 0.00 43.89 1.75
2450 2904 0.670162 GCGTGCATCTGGCCATTATT 59.330 50.000 5.51 0.00 43.89 1.40
2451 2905 0.179009 AGCGTGCATCTGGCCATTAT 60.179 50.000 5.51 0.00 43.89 1.28
2452 2906 1.096967 CAGCGTGCATCTGGCCATTA 61.097 55.000 5.51 0.00 43.89 1.90
2453 2907 2.044650 AGCGTGCATCTGGCCATT 60.045 55.556 5.51 0.00 43.89 3.16
2454 2908 2.827190 CAGCGTGCATCTGGCCAT 60.827 61.111 5.51 0.00 43.89 4.40
2455 2909 4.334118 ACAGCGTGCATCTGGCCA 62.334 61.111 18.96 4.71 43.89 5.36
2456 2910 3.807538 CACAGCGTGCATCTGGCC 61.808 66.667 18.96 0.00 43.89 5.36
2457 2911 2.518836 GAACACAGCGTGCATCTGGC 62.519 60.000 18.96 8.45 45.13 4.85
2458 2912 1.499056 GAACACAGCGTGCATCTGG 59.501 57.895 18.96 12.15 36.98 3.86
2459 2913 1.131218 CGAACACAGCGTGCATCTG 59.869 57.895 14.88 14.88 36.98 2.90
2460 2914 1.300931 ACGAACACAGCGTGCATCT 60.301 52.632 8.31 0.00 40.94 2.90
2461 2915 3.244105 ACGAACACAGCGTGCATC 58.756 55.556 8.31 6.75 40.94 3.91
2479 2933 1.151668 CAGACCTATTATGCCGCTGC 58.848 55.000 0.00 0.00 38.26 5.25
2480 2934 1.609061 CCCAGACCTATTATGCCGCTG 60.609 57.143 0.00 0.00 0.00 5.18
2481 2935 0.687354 CCCAGACCTATTATGCCGCT 59.313 55.000 0.00 0.00 0.00 5.52
2482 2936 0.685097 TCCCAGACCTATTATGCCGC 59.315 55.000 0.00 0.00 0.00 6.53
2483 2937 3.244561 ACAATCCCAGACCTATTATGCCG 60.245 47.826 0.00 0.00 0.00 5.69
2484 2938 4.373156 ACAATCCCAGACCTATTATGCC 57.627 45.455 0.00 0.00 0.00 4.40
2485 2939 5.013183 AGGTACAATCCCAGACCTATTATGC 59.987 44.000 0.00 0.00 40.59 3.14
2486 2940 6.688073 AGGTACAATCCCAGACCTATTATG 57.312 41.667 0.00 0.00 40.59 1.90
2487 2941 7.707467 AAAGGTACAATCCCAGACCTATTAT 57.293 36.000 0.00 0.00 41.55 1.28
2488 2942 7.519347 AAAAGGTACAATCCCAGACCTATTA 57.481 36.000 0.00 0.00 41.55 0.98
2489 2943 6.402981 AAAAGGTACAATCCCAGACCTATT 57.597 37.500 0.00 0.00 41.55 1.73
2490 2944 6.402981 AAAAAGGTACAATCCCAGACCTAT 57.597 37.500 0.00 0.00 41.55 2.57
2491 2945 5.853572 AAAAAGGTACAATCCCAGACCTA 57.146 39.130 0.00 0.00 41.55 3.08
2492 2946 4.741928 AAAAAGGTACAATCCCAGACCT 57.258 40.909 0.00 0.00 44.35 3.85
2510 2964 6.103330 GCCAGGAACAAACTAAACAGAAAAA 58.897 36.000 0.00 0.00 0.00 1.94
2540 2994 2.279851 CACGCCACCACGAACTGA 60.280 61.111 0.00 0.00 36.70 3.41
2594 3050 9.308318 GTTTTTGCTTTCTTCCTTTTATACACA 57.692 29.630 0.00 0.00 0.00 3.72
2620 3076 1.427020 GAACGGAGGGAGTACGTCG 59.573 63.158 0.00 0.00 40.31 5.12
2625 3081 2.442236 AATACCGAACGGAGGGAGTA 57.558 50.000 20.14 1.06 38.96 2.59
2626 3082 2.027385 GTAATACCGAACGGAGGGAGT 58.973 52.381 20.14 4.26 38.96 3.85
2627 3083 2.305009 AGTAATACCGAACGGAGGGAG 58.695 52.381 20.14 0.00 38.96 4.30
2628 3084 2.428171 CAAGTAATACCGAACGGAGGGA 59.572 50.000 20.14 2.73 38.96 4.20
2629 3085 2.167075 ACAAGTAATACCGAACGGAGGG 59.833 50.000 20.14 3.28 38.96 4.30
2630 3086 3.119388 TGACAAGTAATACCGAACGGAGG 60.119 47.826 20.14 0.00 38.96 4.30
2631 3087 3.855950 GTGACAAGTAATACCGAACGGAG 59.144 47.826 20.14 0.00 38.96 4.63
2632 3088 3.255395 TGTGACAAGTAATACCGAACGGA 59.745 43.478 20.14 4.23 38.96 4.69
2633 3089 3.577667 TGTGACAAGTAATACCGAACGG 58.422 45.455 11.83 11.83 42.03 4.44
2634 3090 5.579384 TTTGTGACAAGTAATACCGAACG 57.421 39.130 0.00 0.00 0.00 3.95
2635 3091 7.325097 CCATTTTTGTGACAAGTAATACCGAAC 59.675 37.037 0.00 0.00 0.00 3.95
2636 3092 7.228906 TCCATTTTTGTGACAAGTAATACCGAA 59.771 33.333 0.00 0.00 0.00 4.30
2637 3093 6.711194 TCCATTTTTGTGACAAGTAATACCGA 59.289 34.615 0.00 0.00 0.00 4.69
2638 3094 6.904498 TCCATTTTTGTGACAAGTAATACCG 58.096 36.000 0.00 0.00 0.00 4.02
2639 3095 8.303876 ACATCCATTTTTGTGACAAGTAATACC 58.696 33.333 0.00 0.00 0.00 2.73
2643 3099 9.295825 AGATACATCCATTTTTGTGACAAGTAA 57.704 29.630 0.00 0.00 0.00 2.24
2644 3100 8.862325 AGATACATCCATTTTTGTGACAAGTA 57.138 30.769 0.00 0.00 0.00 2.24
2645 3101 7.765695 AGATACATCCATTTTTGTGACAAGT 57.234 32.000 0.00 0.00 0.00 3.16
2646 3102 8.729756 TGTAGATACATCCATTTTTGTGACAAG 58.270 33.333 0.00 0.00 0.00 3.16
2647 3103 8.628630 TGTAGATACATCCATTTTTGTGACAA 57.371 30.769 0.00 0.00 0.00 3.18
2648 3104 8.511321 GTTGTAGATACATCCATTTTTGTGACA 58.489 33.333 0.00 0.00 35.89 3.58
2649 3105 8.730680 AGTTGTAGATACATCCATTTTTGTGAC 58.269 33.333 0.00 0.00 35.89 3.67
2650 3106 8.862325 AGTTGTAGATACATCCATTTTTGTGA 57.138 30.769 0.00 0.00 35.89 3.58
2681 3137 9.469807 GTCGAAGAAATGAATGTATCTAGATGT 57.530 33.333 15.79 0.00 39.69 3.06
2682 3138 8.634265 CGTCGAAGAAATGAATGTATCTAGATG 58.366 37.037 15.79 0.00 39.69 2.90
2683 3139 8.568794 TCGTCGAAGAAATGAATGTATCTAGAT 58.431 33.333 10.73 10.73 39.69 1.98
2684 3140 7.927048 TCGTCGAAGAAATGAATGTATCTAGA 58.073 34.615 0.00 0.00 39.69 2.43
2685 3141 7.858382 ACTCGTCGAAGAAATGAATGTATCTAG 59.142 37.037 1.95 0.00 39.69 2.43
2686 3142 7.704271 ACTCGTCGAAGAAATGAATGTATCTA 58.296 34.615 1.95 0.00 39.69 1.98
2687 3143 6.565234 ACTCGTCGAAGAAATGAATGTATCT 58.435 36.000 1.95 0.00 39.69 1.98
2688 3144 6.814076 ACTCGTCGAAGAAATGAATGTATC 57.186 37.500 1.95 0.00 39.69 2.24
2689 3145 8.873215 ATTACTCGTCGAAGAAATGAATGTAT 57.127 30.769 1.95 0.00 39.69 2.29
2690 3146 8.697846 AATTACTCGTCGAAGAAATGAATGTA 57.302 30.769 1.95 0.00 39.69 2.29
2691 3147 7.201530 GGAATTACTCGTCGAAGAAATGAATGT 60.202 37.037 1.95 0.00 39.69 2.71
2692 3148 7.119997 GGAATTACTCGTCGAAGAAATGAATG 58.880 38.462 1.95 0.00 39.69 2.67
2693 3149 6.019801 CGGAATTACTCGTCGAAGAAATGAAT 60.020 38.462 1.95 0.00 39.69 2.57
2694 3150 5.287752 CGGAATTACTCGTCGAAGAAATGAA 59.712 40.000 1.95 0.00 39.69 2.57
2695 3151 4.796830 CGGAATTACTCGTCGAAGAAATGA 59.203 41.667 1.95 0.00 39.69 2.57
2696 3152 4.796830 TCGGAATTACTCGTCGAAGAAATG 59.203 41.667 1.95 0.00 39.69 2.32
2697 3153 4.990257 TCGGAATTACTCGTCGAAGAAAT 58.010 39.130 1.95 0.00 39.69 2.17
2698 3154 4.424061 TCGGAATTACTCGTCGAAGAAA 57.576 40.909 1.95 0.00 39.69 2.52
2699 3155 4.161333 GTTCGGAATTACTCGTCGAAGAA 58.839 43.478 1.95 0.00 39.69 2.52
2700 3156 3.725895 CGTTCGGAATTACTCGTCGAAGA 60.726 47.826 0.03 0.03 39.89 2.87
2701 3157 2.525096 CGTTCGGAATTACTCGTCGAAG 59.475 50.000 0.00 0.00 39.89 3.79
2702 3158 2.508867 CGTTCGGAATTACTCGTCGAA 58.491 47.619 0.00 0.00 37.48 3.71
2703 3159 1.202065 CCGTTCGGAATTACTCGTCGA 60.202 52.381 5.19 0.00 0.00 4.20
2704 3160 1.186030 CCGTTCGGAATTACTCGTCG 58.814 55.000 5.19 0.00 0.00 5.12
2705 3161 2.448219 CTCCGTTCGGAATTACTCGTC 58.552 52.381 14.79 0.00 33.41 4.20
2706 3162 1.133790 CCTCCGTTCGGAATTACTCGT 59.866 52.381 14.79 0.00 33.41 4.18
2707 3163 1.535437 CCCTCCGTTCGGAATTACTCG 60.535 57.143 14.79 1.97 33.41 4.18
2708 3164 1.753073 TCCCTCCGTTCGGAATTACTC 59.247 52.381 14.79 0.00 33.41 2.59
2709 3165 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2710 3166 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2711 3167 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2712 3168 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
2713 3169 1.400737 CTACTCCCTCCGTTCGGAAT 58.599 55.000 14.79 2.09 33.41 3.01
2714 3170 0.682209 CCTACTCCCTCCGTTCGGAA 60.682 60.000 14.79 0.04 33.41 4.30
2715 3171 1.077212 CCTACTCCCTCCGTTCGGA 60.077 63.158 13.34 13.34 0.00 4.55
2716 3172 0.969409 AACCTACTCCCTCCGTTCGG 60.969 60.000 4.74 4.74 0.00 4.30
2717 3173 0.172803 CAACCTACTCCCTCCGTTCG 59.827 60.000 0.00 0.00 0.00 3.95
2718 3174 1.553706 TCAACCTACTCCCTCCGTTC 58.446 55.000 0.00 0.00 0.00 3.95
2719 3175 1.622312 GTTCAACCTACTCCCTCCGTT 59.378 52.381 0.00 0.00 0.00 4.44
2720 3176 1.264295 GTTCAACCTACTCCCTCCGT 58.736 55.000 0.00 0.00 0.00 4.69
2721 3177 0.172803 CGTTCAACCTACTCCCTCCG 59.827 60.000 0.00 0.00 0.00 4.63
2722 3178 0.108281 GCGTTCAACCTACTCCCTCC 60.108 60.000 0.00 0.00 0.00 4.30
2723 3179 0.458025 CGCGTTCAACCTACTCCCTC 60.458 60.000 0.00 0.00 0.00 4.30
2724 3180 1.183676 ACGCGTTCAACCTACTCCCT 61.184 55.000 5.58 0.00 0.00 4.20
2725 3181 0.735287 GACGCGTTCAACCTACTCCC 60.735 60.000 15.53 0.00 0.00 4.30
2726 3182 1.069378 CGACGCGTTCAACCTACTCC 61.069 60.000 15.53 0.00 0.00 3.85
2727 3183 1.671880 GCGACGCGTTCAACCTACTC 61.672 60.000 15.53 0.00 0.00 2.59
2728 3184 1.731969 GCGACGCGTTCAACCTACT 60.732 57.895 15.53 0.00 0.00 2.57
2729 3185 1.550659 TTGCGACGCGTTCAACCTAC 61.551 55.000 15.53 0.00 0.00 3.18
2730 3186 0.875040 TTTGCGACGCGTTCAACCTA 60.875 50.000 21.87 9.64 0.00 3.08
2764 3220 2.241176 ACAGGAACCACACTCAAGGAAA 59.759 45.455 0.00 0.00 0.00 3.13
2766 3222 1.416401 GACAGGAACCACACTCAAGGA 59.584 52.381 0.00 0.00 0.00 3.36
2770 3226 1.069090 GCGACAGGAACCACACTCA 59.931 57.895 0.00 0.00 0.00 3.41
2778 3234 1.011451 GTGAGCAGAGCGACAGGAAC 61.011 60.000 0.00 0.00 0.00 3.62
2780 3236 2.640302 GGTGAGCAGAGCGACAGGA 61.640 63.158 0.00 0.00 0.00 3.86
2792 3249 0.461961 ATTGGCTAGAGTCGGTGAGC 59.538 55.000 0.00 2.00 0.00 4.26
2821 3278 6.068461 TCCAGTTTACATACATTTGGCCTA 57.932 37.500 3.32 0.00 0.00 3.93
2822 3279 4.929479 TCCAGTTTACATACATTTGGCCT 58.071 39.130 3.32 0.00 0.00 5.19
2868 3325 0.251033 TTCATCCAGCAGCAGCAGTT 60.251 50.000 3.17 0.00 45.49 3.16
2872 3329 1.171308 TTTCTTCATCCAGCAGCAGC 58.829 50.000 0.00 0.00 42.56 5.25
2873 3330 2.818432 AGTTTTCTTCATCCAGCAGCAG 59.182 45.455 0.00 0.00 0.00 4.24
2905 3367 1.605451 GTACCACCCAACAAGGCCC 60.605 63.158 0.00 0.00 35.39 5.80
2950 3419 8.981647 CCAAATGAGTTTAAGGACATCTTTTTG 58.018 33.333 0.00 0.00 36.93 2.44
2961 3430 4.766891 TCCTCAAGCCAAATGAGTTTAAGG 59.233 41.667 3.18 0.00 42.19 2.69
2977 3450 2.182827 TCACTGGATCCACTCCTCAAG 58.817 52.381 11.44 0.49 45.21 3.02
2991 3464 5.446741 CCAAATTAACGTCCGTAATCACTGG 60.447 44.000 0.00 0.00 0.00 4.00
2992 3465 5.349270 TCCAAATTAACGTCCGTAATCACTG 59.651 40.000 0.00 0.00 0.00 3.66
3106 3600 0.594602 CCACGACTCCACGTTACTGA 59.405 55.000 0.00 0.00 44.76 3.41
3107 3601 0.594602 TCCACGACTCCACGTTACTG 59.405 55.000 0.00 0.00 44.76 2.74
3110 3604 0.311790 GTGTCCACGACTCCACGTTA 59.688 55.000 0.00 0.00 44.76 3.18
3113 3607 0.319555 AATGTGTCCACGACTCCACG 60.320 55.000 0.00 0.00 39.31 4.94
3114 3608 1.878953 AAATGTGTCCACGACTCCAC 58.121 50.000 0.00 0.00 33.15 4.02
3115 3609 2.631160 AAAATGTGTCCACGACTCCA 57.369 45.000 0.00 0.00 33.15 3.86
3192 3752 7.390718 ACCTCCTAAACATAGCAAAGTTAACAG 59.609 37.037 8.61 0.00 0.00 3.16
3209 3769 2.890945 GCTTCAAGCCAAACCTCCTAAA 59.109 45.455 0.00 0.00 34.48 1.85
3248 3808 4.591498 TGTACCACTACCAACTTCACTGAT 59.409 41.667 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.