Multiple sequence alignment - TraesCS3B01G042300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G042300 chr3B 100.000 3735 0 0 983 4717 21402835 21406569 0.000000e+00 6898
1 TraesCS3B01G042300 chr3B 100.000 597 0 0 1 597 21401853 21402449 0.000000e+00 1103
2 TraesCS3B01G042300 chr3B 93.590 156 10 0 1 156 14314341 14314186 2.840000e-57 233
3 TraesCS3B01G042300 chr3B 83.471 121 8 5 4597 4717 21708518 21708626 8.350000e-18 102
4 TraesCS3B01G042300 chr3D 92.037 2901 151 42 983 3854 14446809 14449658 0.000000e+00 4004
5 TraesCS3B01G042300 chr3D 88.940 217 14 6 385 591 14446557 14446773 4.680000e-65 259
6 TraesCS3B01G042300 chr3D 85.915 71 9 1 228 298 14446396 14446465 1.820000e-09 75
7 TraesCS3B01G042300 chr3A 94.008 1886 77 16 1891 3763 22230637 22228775 0.000000e+00 2824
8 TraesCS3B01G042300 chr3A 84.771 545 39 14 983 1520 22231530 22231023 1.510000e-139 507
9 TraesCS3B01G042300 chr3A 85.366 410 30 23 190 597 22231941 22231560 9.510000e-107 398
10 TraesCS3B01G042300 chr3A 81.616 359 39 17 4037 4389 22147243 22146906 6.010000e-69 272
11 TraesCS3B01G042300 chr3A 82.650 317 35 10 3569 3878 22147924 22147621 3.620000e-66 263
12 TraesCS3B01G042300 chr3A 86.920 237 18 4 4473 4708 22146904 22146680 2.180000e-63 254
13 TraesCS3B01G042300 chr3A 92.357 157 9 2 3264 3420 22149387 22149234 2.210000e-53 220
14 TraesCS3B01G042300 chr3A 91.304 138 12 0 3413 3550 22148217 22148080 6.230000e-44 189
15 TraesCS3B01G042300 chr2B 82.636 1722 210 50 2297 3967 492150618 492148935 0.000000e+00 1441
16 TraesCS3B01G042300 chr2B 95.484 155 6 1 1 154 531148508 531148662 3.650000e-61 246
17 TraesCS3B01G042300 chr2B 94.904 157 7 1 1 156 390867778 390867622 1.310000e-60 244
18 TraesCS3B01G042300 chr2B 93.671 158 8 2 1 156 485327978 485327821 7.890000e-58 235
19 TraesCS3B01G042300 chr2B 75.610 410 61 16 983 1366 492151702 492151306 2.920000e-37 167
20 TraesCS3B01G042300 chr2D 82.350 1745 208 50 2297 3967 419785815 419784097 0.000000e+00 1424
21 TraesCS3B01G042300 chr2D 97.802 91 2 0 4385 4475 270480862 270480952 1.760000e-34 158
22 TraesCS3B01G042300 chr2D 74.442 403 74 13 983 1363 419786902 419786507 3.800000e-31 147
23 TraesCS3B01G042300 chr2A 81.850 1719 219 58 2297 3957 570190775 570192458 0.000000e+00 1360
24 TraesCS3B01G042300 chr2A 75.556 405 61 16 983 1363 570189546 570189936 1.050000e-36 165
25 TraesCS3B01G042300 chr2A 98.876 89 1 0 4387 4475 166784984 166785072 4.890000e-35 159
26 TraesCS3B01G042300 chr2A 93.333 105 3 3 4390 4494 678161351 678161251 8.180000e-33 152
27 TraesCS3B01G042300 chr2A 91.509 106 9 0 4390 4495 69222585 69222480 3.800000e-31 147
28 TraesCS3B01G042300 chr6B 95.541 157 6 1 1 156 289767302 289767458 2.820000e-62 250
29 TraesCS3B01G042300 chr6B 94.904 157 7 1 1 156 289782060 289782216 1.310000e-60 244
30 TraesCS3B01G042300 chr6B 94.904 157 7 1 1 156 289821239 289821395 1.310000e-60 244
31 TraesCS3B01G042300 chr1B 95.484 155 6 1 1 154 321257148 321257302 3.650000e-61 246
32 TraesCS3B01G042300 chr1B 94.839 155 7 1 1 154 319190798 319190952 1.700000e-59 241
33 TraesCS3B01G042300 chr1B 100.000 86 0 0 4390 4475 28500504 28500419 4.890000e-35 159
34 TraesCS3B01G042300 chr1B 95.918 98 3 1 4389 4485 39580144 39580047 1.760000e-34 158
35 TraesCS3B01G042300 chr5D 100.000 88 0 0 4387 4474 322375836 322375749 3.780000e-36 163
36 TraesCS3B01G042300 chr4A 100.000 88 0 0 4389 4476 107430148 107430235 3.780000e-36 163
37 TraesCS3B01G042300 chrUn 95.050 101 3 2 4376 4474 16901609 16901709 1.760000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G042300 chr3B 21401853 21406569 4716 False 4000.5 6898 100.000000 1 4717 2 chr3B.!!$F2 4716
1 TraesCS3B01G042300 chr3D 14446396 14449658 3262 False 1446.0 4004 88.964000 228 3854 3 chr3D.!!$F1 3626
2 TraesCS3B01G042300 chr3A 22228775 22231941 3166 True 1243.0 2824 88.048333 190 3763 3 chr3A.!!$R2 3573
3 TraesCS3B01G042300 chr3A 22146680 22149387 2707 True 239.6 272 86.969400 3264 4708 5 chr3A.!!$R1 1444
4 TraesCS3B01G042300 chr2B 492148935 492151702 2767 True 804.0 1441 79.123000 983 3967 2 chr2B.!!$R3 2984
5 TraesCS3B01G042300 chr2D 419784097 419786902 2805 True 785.5 1424 78.396000 983 3967 2 chr2D.!!$R1 2984
6 TraesCS3B01G042300 chr2A 570189546 570192458 2912 False 762.5 1360 78.703000 983 3957 2 chr2A.!!$F2 2974

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
267 268 0.036875 AACCCAACAGCTCTGCCTAC 59.963 55.000 0.00 0.0 0.00 3.18 F
1175 1233 0.041090 GCTGGATCCCCTCCCAAAAA 59.959 55.000 9.90 0.0 44.23 1.94 F
1198 1256 1.377856 GCAGGTCCTGAGAAAGGCC 60.378 63.158 23.77 0.0 46.92 5.19 F
2198 2827 0.533032 AGCAAGGACTAAGGAGCGAC 59.467 55.000 0.00 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1198 1256 0.036010 CTACCACTGAGGGCCAACAG 60.036 60.000 22.78 22.78 43.89 3.16 R
2122 2751 3.068448 TGCTCAAGACATGCAAACACAAT 59.932 39.130 0.00 0.00 33.48 2.71 R
2885 3525 4.117685 ACGCGAATAATCTTCCCTGTAAC 58.882 43.478 15.93 0.00 0.00 2.50 R
4195 6300 0.320771 AAGCCTTCCGCACAGTGTAG 60.321 55.000 1.61 0.00 41.38 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.554395 TGATATACACTTGTTTATATGTGTGGG 57.446 33.333 7.72 0.00 42.61 4.61
28 29 9.555727 GATATACACTTGTTTATATGTGTGGGT 57.444 33.333 7.72 0.00 42.61 4.51
29 30 7.859325 ATACACTTGTTTATATGTGTGGGTC 57.141 36.000 7.72 0.00 42.61 4.46
30 31 5.876357 ACACTTGTTTATATGTGTGGGTCT 58.124 37.500 0.00 0.00 41.37 3.85
31 32 5.705441 ACACTTGTTTATATGTGTGGGTCTG 59.295 40.000 0.00 0.00 41.37 3.51
32 33 5.937540 CACTTGTTTATATGTGTGGGTCTGA 59.062 40.000 0.00 0.00 0.00 3.27
33 34 5.938125 ACTTGTTTATATGTGTGGGTCTGAC 59.062 40.000 0.00 0.00 0.00 3.51
34 35 4.839121 TGTTTATATGTGTGGGTCTGACC 58.161 43.478 18.65 18.65 37.60 4.02
35 36 4.534500 TGTTTATATGTGTGGGTCTGACCT 59.466 41.667 25.01 7.94 38.64 3.85
36 37 5.013704 TGTTTATATGTGTGGGTCTGACCTT 59.986 40.000 25.01 7.32 38.64 3.50
37 38 6.213802 TGTTTATATGTGTGGGTCTGACCTTA 59.786 38.462 25.01 12.71 38.64 2.69
38 39 6.877668 TTATATGTGTGGGTCTGACCTTAA 57.122 37.500 25.01 9.68 38.64 1.85
39 40 5.975988 ATATGTGTGGGTCTGACCTTAAT 57.024 39.130 25.01 14.17 38.64 1.40
40 41 3.695830 TGTGTGGGTCTGACCTTAATC 57.304 47.619 25.01 9.66 38.64 1.75
41 42 2.028476 TGTGTGGGTCTGACCTTAATCG 60.028 50.000 25.01 0.00 38.64 3.34
42 43 2.232941 GTGTGGGTCTGACCTTAATCGA 59.767 50.000 25.01 0.00 38.64 3.59
43 44 3.104512 TGTGGGTCTGACCTTAATCGAT 58.895 45.455 25.01 0.00 38.64 3.59
44 45 3.118775 TGTGGGTCTGACCTTAATCGATG 60.119 47.826 25.01 0.00 38.64 3.84
45 46 2.158957 TGGGTCTGACCTTAATCGATGC 60.159 50.000 25.01 6.17 38.64 3.91
46 47 2.484889 GGTCTGACCTTAATCGATGCC 58.515 52.381 19.53 0.00 34.73 4.40
47 48 2.484889 GTCTGACCTTAATCGATGCCC 58.515 52.381 0.00 0.00 0.00 5.36
48 49 2.115427 TCTGACCTTAATCGATGCCCA 58.885 47.619 0.00 0.00 0.00 5.36
49 50 2.503765 TCTGACCTTAATCGATGCCCAA 59.496 45.455 0.00 0.00 0.00 4.12
50 51 3.136443 TCTGACCTTAATCGATGCCCAAT 59.864 43.478 0.00 0.00 0.00 3.16
51 52 3.885297 CTGACCTTAATCGATGCCCAATT 59.115 43.478 0.00 0.00 0.00 2.32
52 53 4.277476 TGACCTTAATCGATGCCCAATTT 58.723 39.130 0.00 0.00 0.00 1.82
53 54 4.709397 TGACCTTAATCGATGCCCAATTTT 59.291 37.500 0.00 0.00 0.00 1.82
54 55 5.186797 TGACCTTAATCGATGCCCAATTTTT 59.813 36.000 0.00 0.00 0.00 1.94
69 70 1.435515 TTTTTCACAGTGTGCGGGC 59.564 52.632 18.80 0.00 32.98 6.13
70 71 2.329678 TTTTTCACAGTGTGCGGGCG 62.330 55.000 18.80 0.00 32.98 6.13
78 79 4.627801 TGTGCGGGCGGTGCTAAA 62.628 61.111 0.00 0.00 0.00 1.85
79 80 3.131478 GTGCGGGCGGTGCTAAAT 61.131 61.111 0.00 0.00 0.00 1.40
80 81 1.816259 GTGCGGGCGGTGCTAAATA 60.816 57.895 0.00 0.00 0.00 1.40
81 82 1.147376 TGCGGGCGGTGCTAAATAT 59.853 52.632 0.00 0.00 0.00 1.28
82 83 0.393448 TGCGGGCGGTGCTAAATATA 59.607 50.000 0.00 0.00 0.00 0.86
83 84 1.002659 TGCGGGCGGTGCTAAATATAT 59.997 47.619 0.00 0.00 0.00 0.86
84 85 2.081462 GCGGGCGGTGCTAAATATATT 58.919 47.619 0.00 0.00 0.00 1.28
85 86 2.486592 GCGGGCGGTGCTAAATATATTT 59.513 45.455 14.86 14.86 0.00 1.40
86 87 3.425758 GCGGGCGGTGCTAAATATATTTC 60.426 47.826 13.95 2.31 0.00 2.17
87 88 3.749088 CGGGCGGTGCTAAATATATTTCA 59.251 43.478 13.95 4.89 0.00 2.69
88 89 4.394920 CGGGCGGTGCTAAATATATTTCAT 59.605 41.667 13.95 0.00 0.00 2.57
89 90 5.447279 CGGGCGGTGCTAAATATATTTCATC 60.447 44.000 13.95 6.97 0.00 2.92
90 91 5.648092 GGGCGGTGCTAAATATATTTCATCT 59.352 40.000 13.95 0.00 0.00 2.90
91 92 6.403636 GGGCGGTGCTAAATATATTTCATCTG 60.404 42.308 13.95 9.52 0.00 2.90
92 93 6.403636 GGCGGTGCTAAATATATTTCATCTGG 60.404 42.308 13.95 3.54 0.00 3.86
93 94 6.149474 GCGGTGCTAAATATATTTCATCTGGT 59.851 38.462 13.95 0.00 0.00 4.00
94 95 7.333423 GCGGTGCTAAATATATTTCATCTGGTA 59.667 37.037 13.95 0.00 0.00 3.25
95 96 9.383519 CGGTGCTAAATATATTTCATCTGGTAT 57.616 33.333 13.95 0.00 0.00 2.73
105 106 3.650070 TCATCTGGTATCATCGTCTGC 57.350 47.619 0.00 0.00 0.00 4.26
106 107 2.030805 TCATCTGGTATCATCGTCTGCG 60.031 50.000 0.00 0.00 39.92 5.18
107 108 1.389555 TCTGGTATCATCGTCTGCGT 58.610 50.000 0.00 0.00 39.49 5.24
108 109 1.065551 TCTGGTATCATCGTCTGCGTG 59.934 52.381 0.00 0.00 39.49 5.34
109 110 0.102300 TGGTATCATCGTCTGCGTGG 59.898 55.000 0.00 0.00 39.49 4.94
110 111 1.215655 GGTATCATCGTCTGCGTGGC 61.216 60.000 0.00 0.00 39.49 5.01
111 112 0.527600 GTATCATCGTCTGCGTGGCA 60.528 55.000 0.00 0.00 39.49 4.92
112 113 0.389025 TATCATCGTCTGCGTGGCAT 59.611 50.000 0.00 0.00 38.13 4.40
113 114 0.389025 ATCATCGTCTGCGTGGCATA 59.611 50.000 0.00 0.00 38.13 3.14
114 115 0.389025 TCATCGTCTGCGTGGCATAT 59.611 50.000 0.00 0.00 38.13 1.78
115 116 1.202521 TCATCGTCTGCGTGGCATATT 60.203 47.619 0.00 0.00 38.13 1.28
116 117 1.599071 CATCGTCTGCGTGGCATATTT 59.401 47.619 0.00 0.00 38.13 1.40
117 118 1.732941 TCGTCTGCGTGGCATATTTT 58.267 45.000 0.00 0.00 38.13 1.82
118 119 2.080693 TCGTCTGCGTGGCATATTTTT 58.919 42.857 0.00 0.00 38.13 1.94
119 120 2.095213 TCGTCTGCGTGGCATATTTTTC 59.905 45.455 0.00 0.00 38.13 2.29
120 121 2.159585 CGTCTGCGTGGCATATTTTTCA 60.160 45.455 0.00 0.00 38.13 2.69
121 122 3.429085 GTCTGCGTGGCATATTTTTCAG 58.571 45.455 0.00 0.00 38.13 3.02
122 123 3.126858 GTCTGCGTGGCATATTTTTCAGA 59.873 43.478 0.00 0.00 38.13 3.27
123 124 3.374988 TCTGCGTGGCATATTTTTCAGAG 59.625 43.478 0.00 0.00 38.13 3.35
124 125 3.081061 TGCGTGGCATATTTTTCAGAGT 58.919 40.909 0.00 0.00 31.71 3.24
125 126 3.505680 TGCGTGGCATATTTTTCAGAGTT 59.494 39.130 0.00 0.00 31.71 3.01
126 127 3.853671 GCGTGGCATATTTTTCAGAGTTG 59.146 43.478 0.00 0.00 0.00 3.16
127 128 4.615912 GCGTGGCATATTTTTCAGAGTTGT 60.616 41.667 0.00 0.00 0.00 3.32
128 129 4.853196 CGTGGCATATTTTTCAGAGTTGTG 59.147 41.667 0.00 0.00 0.00 3.33
129 130 5.163513 GTGGCATATTTTTCAGAGTTGTGG 58.836 41.667 0.00 0.00 0.00 4.17
130 131 4.176271 GGCATATTTTTCAGAGTTGTGGC 58.824 43.478 0.00 0.00 0.00 5.01
131 132 4.321899 GGCATATTTTTCAGAGTTGTGGCA 60.322 41.667 0.00 0.00 0.00 4.92
132 133 5.413499 GCATATTTTTCAGAGTTGTGGCAT 58.587 37.500 0.00 0.00 0.00 4.40
133 134 5.517770 GCATATTTTTCAGAGTTGTGGCATC 59.482 40.000 0.00 0.00 0.00 3.91
134 135 3.624326 TTTTTCAGAGTTGTGGCATCG 57.376 42.857 0.00 0.00 0.00 3.84
135 136 2.542020 TTTCAGAGTTGTGGCATCGA 57.458 45.000 0.00 0.00 0.00 3.59
136 137 2.542020 TTCAGAGTTGTGGCATCGAA 57.458 45.000 0.00 0.00 0.00 3.71
137 138 1.795768 TCAGAGTTGTGGCATCGAAC 58.204 50.000 0.00 0.00 0.00 3.95
138 139 1.069978 TCAGAGTTGTGGCATCGAACA 59.930 47.619 0.00 0.00 0.00 3.18
139 140 1.195448 CAGAGTTGTGGCATCGAACAC 59.805 52.381 10.28 10.28 38.08 3.32
140 141 1.202639 AGAGTTGTGGCATCGAACACA 60.203 47.619 14.46 14.46 45.06 3.72
141 142 1.806542 GAGTTGTGGCATCGAACACAT 59.193 47.619 17.77 7.61 45.90 3.21
142 143 2.226437 GAGTTGTGGCATCGAACACATT 59.774 45.455 17.77 11.44 45.90 2.71
143 144 2.030893 AGTTGTGGCATCGAACACATTG 60.031 45.455 17.77 0.00 45.90 2.82
144 145 1.603456 TGTGGCATCGAACACATTGT 58.397 45.000 14.46 0.00 42.20 2.71
145 146 1.266446 TGTGGCATCGAACACATTGTG 59.734 47.619 15.18 15.18 42.20 3.33
146 147 0.880441 TGGCATCGAACACATTGTGG 59.120 50.000 20.33 3.69 37.94 4.17
147 148 1.164411 GGCATCGAACACATTGTGGA 58.836 50.000 20.33 8.92 37.94 4.02
148 149 1.539388 GGCATCGAACACATTGTGGAA 59.461 47.619 20.33 3.82 37.94 3.53
149 150 2.414559 GGCATCGAACACATTGTGGAAG 60.415 50.000 20.33 10.69 37.94 3.46
150 151 2.414559 GCATCGAACACATTGTGGAAGG 60.415 50.000 20.33 7.28 37.94 3.46
151 152 1.234821 TCGAACACATTGTGGAAGGC 58.765 50.000 20.33 4.57 37.94 4.35
152 153 0.240945 CGAACACATTGTGGAAGGCC 59.759 55.000 20.33 0.00 37.94 5.19
153 154 1.620822 GAACACATTGTGGAAGGCCT 58.379 50.000 20.33 0.00 37.94 5.19
154 155 1.963515 GAACACATTGTGGAAGGCCTT 59.036 47.619 20.65 20.65 37.94 4.35
155 156 2.969821 ACACATTGTGGAAGGCCTTA 57.030 45.000 20.54 1.80 37.94 2.69
156 157 3.456380 ACACATTGTGGAAGGCCTTAT 57.544 42.857 20.54 4.69 37.94 1.73
157 158 4.584638 ACACATTGTGGAAGGCCTTATA 57.415 40.909 20.54 7.61 37.94 0.98
158 159 4.526970 ACACATTGTGGAAGGCCTTATAG 58.473 43.478 20.54 6.98 37.94 1.31
159 160 3.885297 CACATTGTGGAAGGCCTTATAGG 59.115 47.826 20.54 7.17 38.80 2.57
160 161 3.117512 ACATTGTGGAAGGCCTTATAGGG 60.118 47.826 20.54 7.70 35.37 3.53
161 162 2.579624 TGTGGAAGGCCTTATAGGGA 57.420 50.000 20.54 0.00 35.37 4.20
162 163 2.853430 TGTGGAAGGCCTTATAGGGAA 58.147 47.619 20.54 0.00 35.37 3.97
163 164 2.777692 TGTGGAAGGCCTTATAGGGAAG 59.222 50.000 20.54 0.00 35.37 3.46
164 165 3.046374 GTGGAAGGCCTTATAGGGAAGA 58.954 50.000 20.54 0.00 35.37 2.87
165 166 3.458487 GTGGAAGGCCTTATAGGGAAGAA 59.542 47.826 20.54 0.00 35.37 2.52
166 167 3.716872 TGGAAGGCCTTATAGGGAAGAAG 59.283 47.826 20.54 0.00 35.37 2.85
167 168 3.974642 GGAAGGCCTTATAGGGAAGAAGA 59.025 47.826 20.54 0.00 35.37 2.87
168 169 4.412528 GGAAGGCCTTATAGGGAAGAAGAA 59.587 45.833 20.54 0.00 35.37 2.52
169 170 5.455469 GGAAGGCCTTATAGGGAAGAAGAAG 60.455 48.000 20.54 0.00 35.37 2.85
170 171 4.897051 AGGCCTTATAGGGAAGAAGAAGA 58.103 43.478 0.00 0.00 35.37 2.87
171 172 5.481644 AGGCCTTATAGGGAAGAAGAAGAT 58.518 41.667 0.00 0.00 35.37 2.40
172 173 5.546110 AGGCCTTATAGGGAAGAAGAAGATC 59.454 44.000 0.00 0.00 35.37 2.75
173 174 5.546110 GGCCTTATAGGGAAGAAGAAGATCT 59.454 44.000 4.79 0.00 35.37 2.75
174 175 6.463360 GCCTTATAGGGAAGAAGAAGATCTG 58.537 44.000 4.79 0.00 35.37 2.90
175 176 6.268847 GCCTTATAGGGAAGAAGAAGATCTGA 59.731 42.308 4.79 0.00 35.37 3.27
176 177 7.202047 GCCTTATAGGGAAGAAGAAGATCTGAA 60.202 40.741 4.79 0.00 35.37 3.02
177 178 8.879227 CCTTATAGGGAAGAAGAAGATCTGAAT 58.121 37.037 0.00 0.00 0.00 2.57
178 179 9.927668 CTTATAGGGAAGAAGAAGATCTGAATC 57.072 37.037 0.00 0.00 0.00 2.52
179 180 9.667607 TTATAGGGAAGAAGAAGATCTGAATCT 57.332 33.333 0.00 0.00 44.37 2.40
180 181 6.237887 AGGGAAGAAGAAGATCTGAATCTG 57.762 41.667 0.00 0.00 41.54 2.90
181 182 4.815846 GGGAAGAAGAAGATCTGAATCTGC 59.184 45.833 0.00 0.00 41.54 4.26
182 183 5.426504 GGAAGAAGAAGATCTGAATCTGCA 58.573 41.667 0.00 0.00 41.54 4.41
183 184 6.056884 GGAAGAAGAAGATCTGAATCTGCAT 58.943 40.000 0.00 0.00 41.54 3.96
184 185 6.203338 GGAAGAAGAAGATCTGAATCTGCATC 59.797 42.308 0.00 0.00 41.54 3.91
185 186 6.488769 AGAAGAAGATCTGAATCTGCATCT 57.511 37.500 0.00 0.00 39.68 2.90
186 187 6.285224 AGAAGAAGATCTGAATCTGCATCTG 58.715 40.000 0.00 0.00 41.85 2.90
187 188 5.617528 AGAAGATCTGAATCTGCATCTGT 57.382 39.130 0.00 0.00 41.54 3.41
188 189 5.991861 AGAAGATCTGAATCTGCATCTGTT 58.008 37.500 0.00 0.00 41.54 3.16
202 203 2.024176 TCTGTTTGGACTAGAGCCCA 57.976 50.000 0.00 0.00 0.00 5.36
267 268 0.036875 AACCCAACAGCTCTGCCTAC 59.963 55.000 0.00 0.00 0.00 3.18
402 428 3.782443 CACCACCGCTCCCTACCC 61.782 72.222 0.00 0.00 0.00 3.69
435 465 1.306642 CGTCTGTCGCACCTCCTACT 61.307 60.000 0.00 0.00 0.00 2.57
438 468 1.668101 CTGTCGCACCTCCTACTCCC 61.668 65.000 0.00 0.00 0.00 4.30
449 479 0.253327 CCTACTCCCAAGTTCCTGCC 59.747 60.000 0.00 0.00 36.92 4.85
455 485 2.750350 CAAGTTCCTGCCCCGTCT 59.250 61.111 0.00 0.00 0.00 4.18
558 597 3.044305 GAGCACGCACCTCACACC 61.044 66.667 0.00 0.00 0.00 4.16
1024 1067 4.308458 CTTCACCGGCGACCACCA 62.308 66.667 9.30 0.00 0.00 4.17
1153 1210 3.802685 GGTCTACCGTATCTTGCATTGAC 59.197 47.826 0.00 0.00 0.00 3.18
1154 1211 4.441634 GGTCTACCGTATCTTGCATTGACT 60.442 45.833 0.00 0.00 0.00 3.41
1155 1212 4.504461 GTCTACCGTATCTTGCATTGACTG 59.496 45.833 0.00 0.00 0.00 3.51
1156 1213 2.632377 ACCGTATCTTGCATTGACTGG 58.368 47.619 0.00 0.00 0.00 4.00
1157 1214 1.331756 CCGTATCTTGCATTGACTGGC 59.668 52.381 0.00 0.00 0.00 4.85
1171 1228 4.037413 TGGCTGGATCCCCTCCCA 62.037 66.667 9.90 7.46 44.23 4.37
1172 1229 2.696125 GGCTGGATCCCCTCCCAA 60.696 66.667 9.90 0.00 44.23 4.12
1175 1233 0.041090 GCTGGATCCCCTCCCAAAAA 59.959 55.000 9.90 0.00 44.23 1.94
1198 1256 1.377856 GCAGGTCCTGAGAAAGGCC 60.378 63.158 23.77 0.00 46.92 5.19
1287 1375 4.651008 GCGTCCGTCCGGTCAACA 62.651 66.667 0.00 0.00 36.47 3.33
1451 1817 9.617975 GCACTAAGATCAAATGATTTTATAGGC 57.382 33.333 6.80 7.35 32.80 3.93
1600 1970 3.130164 TGTCCCAAACAATGTTGACAGTG 59.870 43.478 11.99 9.74 46.23 3.66
1667 2202 5.825593 AGAAGTACAAAGTTGGATCCTCA 57.174 39.130 14.23 0.00 0.00 3.86
1813 2353 6.626302 AGTATCTTCAAGTGCTTACTGACTC 58.374 40.000 0.00 0.00 0.00 3.36
1814 2354 5.736951 ATCTTCAAGTGCTTACTGACTCT 57.263 39.130 0.00 0.00 0.00 3.24
1815 2355 5.537300 TCTTCAAGTGCTTACTGACTCTT 57.463 39.130 0.00 0.00 0.00 2.85
2101 2730 9.874205 TGTGAAAAATCATTCCTGGAAATAATC 57.126 29.630 14.03 6.59 0.00 1.75
2169 2798 5.362556 TTGTCTCTTACAATTGCTGAAGC 57.637 39.130 5.05 0.00 43.22 3.86
2198 2827 0.533032 AGCAAGGACTAAGGAGCGAC 59.467 55.000 0.00 0.00 0.00 5.19
2284 2917 3.011595 TGAGAATAATATGGGCCATGGGG 59.988 47.826 29.14 0.00 37.18 4.96
2285 2918 2.315763 AGAATAATATGGGCCATGGGGG 59.684 50.000 29.14 0.00 40.85 5.40
2547 3183 5.130477 TGTCTGGTCCATCTAAAGGGATTAC 59.870 44.000 0.00 0.00 37.74 1.89
2645 3282 1.075536 CCAGGGCCTGGTAAGTTTCTT 59.924 52.381 39.34 0.00 45.82 2.52
2687 3324 8.398665 ACAGTTTTAAGTTTCTGAGCTTAACAG 58.601 33.333 12.75 0.00 38.00 3.16
2867 3507 6.601332 AGGTTTTTCATGACCTGTTCTTCTA 58.399 36.000 3.11 0.00 44.40 2.10
2879 3519 5.188555 ACCTGTTCTTCTATCTTGCTGATGA 59.811 40.000 3.60 0.00 36.65 2.92
2885 3525 9.286946 GTTCTTCTATCTTGCTGATGATTTTTG 57.713 33.333 3.60 0.00 36.65 2.44
2941 3593 0.114954 TGCATGGAAAAAGCTCCCCT 59.885 50.000 0.00 0.00 34.22 4.79
3024 3676 7.252612 TCTCAACAGTTCAGTAAATCCCATA 57.747 36.000 0.00 0.00 0.00 2.74
3114 3776 4.634443 CACACATCTCATGATTGCTTCTGA 59.366 41.667 0.00 0.00 0.00 3.27
3334 4008 2.703536 TCCTTGTTCAGTCTGGCACTTA 59.296 45.455 0.00 0.00 30.26 2.24
3411 4086 4.260784 CCTTTTACCGCTGCAAGATATCAC 60.261 45.833 5.32 0.00 34.07 3.06
3533 5238 9.209175 GTACAAGCATATCCAGGTATTTCTTAG 57.791 37.037 0.00 0.00 0.00 2.18
3566 5271 3.927555 CCGTGGTTGTCATGGTAGT 57.072 52.632 0.00 0.00 45.36 2.73
3580 5422 9.642343 TTGTCATGGTAGTACTAACTGATAGAT 57.358 33.333 18.57 0.17 36.36 1.98
3693 5535 1.273606 TCGAGGAGTTTGAGAAGCAGG 59.726 52.381 0.00 0.00 0.00 4.85
3750 5594 4.279982 AGTAGAGCACTTAGGGGAACTAC 58.720 47.826 0.00 0.00 31.59 2.73
3769 5634 5.869579 ACTACATAGATGCTATTGTTGGGG 58.130 41.667 0.00 0.00 0.00 4.96
3806 5680 6.036517 CCAAACAGATTCAGAGATAAGGAACG 59.963 42.308 0.00 0.00 0.00 3.95
3835 5712 1.801512 GCTTTCCGTTGCCATTCGC 60.802 57.895 0.00 0.00 38.31 4.70
3854 5783 7.167968 CCATTCGCTTGGTTCATTGTAATAATG 59.832 37.037 0.00 0.00 31.74 1.90
3855 5784 6.751514 TCGCTTGGTTCATTGTAATAATGT 57.248 33.333 0.00 0.00 0.00 2.71
3870 5799 7.915508 TGTAATAATGTTCATTGTGGATCGAC 58.084 34.615 0.12 0.12 0.00 4.20
3878 5807 4.436332 TCATTGTGGATCGACATCTCTTG 58.564 43.478 11.61 5.43 0.00 3.02
3904 5838 4.787598 ACTTGATCAACTTTGTGAATCGC 58.212 39.130 3.38 0.00 0.00 4.58
3909 5843 0.591170 AACTTTGTGAATCGCGGTGG 59.409 50.000 6.13 0.00 0.00 4.61
3918 5852 1.577328 AATCGCGGTGGCTCTTTGTG 61.577 55.000 6.13 0.00 36.88 3.33
3946 5880 2.445396 TCAGTGGAAGCTGAGCTGT 58.555 52.632 8.16 0.00 40.23 4.40
3957 5891 5.368256 AAGCTGAGCTGTTTAACATCTTG 57.632 39.130 8.16 1.75 39.62 3.02
3959 5893 3.753272 GCTGAGCTGTTTAACATCTTGGA 59.247 43.478 2.91 0.00 0.00 3.53
3967 5901 5.690865 TGTTTAACATCTTGGACTGGTTCT 58.309 37.500 0.00 0.00 0.00 3.01
3971 5905 0.329596 ATCTTGGACTGGTTCTGGGC 59.670 55.000 0.00 0.00 0.00 5.36
3999 5933 1.243342 CCTTGCCGTGCTCCATTTCA 61.243 55.000 0.00 0.00 0.00 2.69
4011 5945 0.982704 CCATTTCATTGTTGGGCCCA 59.017 50.000 24.45 24.45 0.00 5.36
4012 5946 1.350351 CCATTTCATTGTTGGGCCCAA 59.650 47.619 34.07 34.07 0.00 4.12
4022 5956 0.179006 TTGGGCCCAATTGTTTTGGC 60.179 50.000 34.07 13.35 41.77 4.52
4033 6109 5.180271 CAATTGTTTTGGCAGCCTGAATAT 58.820 37.500 14.15 3.15 0.00 1.28
4039 6115 4.924305 TTGGCAGCCTGAATATCATTTC 57.076 40.909 14.15 0.00 0.00 2.17
4042 6118 3.505293 GGCAGCCTGAATATCATTTCCTC 59.495 47.826 3.29 0.00 0.00 3.71
4047 6123 3.990469 CCTGAATATCATTTCCTCCGTCG 59.010 47.826 0.00 0.00 0.00 5.12
4064 6169 2.218603 GTCGTGTTTCACAGGTGGAAT 58.781 47.619 0.00 0.00 35.64 3.01
4065 6170 2.032030 GTCGTGTTTCACAGGTGGAATG 60.032 50.000 0.00 0.00 35.64 2.67
4071 6176 0.692476 TCACAGGTGGAATGAGTGGG 59.308 55.000 0.00 0.00 0.00 4.61
4081 6186 2.299867 GGAATGAGTGGGCAAACATGTT 59.700 45.455 4.92 4.92 0.00 2.71
4084 6189 4.519540 ATGAGTGGGCAAACATGTTTAC 57.480 40.909 22.87 17.44 0.00 2.01
4090 6195 3.509575 TGGGCAAACATGTTTACCTGATC 59.490 43.478 30.65 19.03 36.47 2.92
4107 6212 5.481473 ACCTGATCATACAACATTTTTGCCT 59.519 36.000 0.00 0.00 0.00 4.75
4111 6216 5.895636 TCATACAACATTTTTGCCTCGAT 57.104 34.783 0.00 0.00 0.00 3.59
4126 6231 3.782046 CCTCGATTCTGTACCGAATGTT 58.218 45.455 16.17 0.00 33.96 2.71
4127 6232 4.181578 CCTCGATTCTGTACCGAATGTTT 58.818 43.478 16.17 0.00 33.96 2.83
4128 6233 4.032900 CCTCGATTCTGTACCGAATGTTTG 59.967 45.833 16.17 4.99 33.96 2.93
4129 6234 3.930229 TCGATTCTGTACCGAATGTTTGG 59.070 43.478 16.17 0.00 33.96 3.28
4152 6257 4.516321 GCCAAAAATGCTCTGAAAATGGTT 59.484 37.500 0.00 0.00 0.00 3.67
4154 6259 6.128472 GCCAAAAATGCTCTGAAAATGGTTAG 60.128 38.462 0.00 0.00 0.00 2.34
4155 6260 6.930722 CCAAAAATGCTCTGAAAATGGTTAGT 59.069 34.615 0.00 0.00 0.00 2.24
4164 6269 5.415701 TCTGAAAATGGTTAGTGAATGCCTC 59.584 40.000 0.00 0.00 0.00 4.70
4168 6273 3.003394 TGGTTAGTGAATGCCTCCATG 57.997 47.619 0.00 0.00 0.00 3.66
4169 6274 2.301346 GGTTAGTGAATGCCTCCATGG 58.699 52.381 4.97 4.97 39.35 3.66
4179 6284 2.496942 CCTCCATGGCACCATCAAC 58.503 57.895 6.96 0.00 33.90 3.18
4180 6285 0.323633 CCTCCATGGCACCATCAACA 60.324 55.000 6.96 0.00 33.90 3.33
4181 6286 1.687054 CCTCCATGGCACCATCAACAT 60.687 52.381 6.96 0.00 33.90 2.71
4182 6287 1.407618 CTCCATGGCACCATCAACATG 59.592 52.381 6.96 0.00 40.17 3.21
4183 6288 1.187974 CCATGGCACCATCAACATGT 58.812 50.000 0.00 0.00 39.14 3.21
4184 6289 2.025510 TCCATGGCACCATCAACATGTA 60.026 45.455 6.96 0.00 39.14 2.29
4185 6290 2.359848 CCATGGCACCATCAACATGTAG 59.640 50.000 0.00 0.00 39.14 2.74
4186 6291 2.877097 TGGCACCATCAACATGTAGT 57.123 45.000 0.00 0.00 0.00 2.73
4208 6313 0.391228 TTTCTGCTACACTGTGCGGA 59.609 50.000 7.90 1.66 42.10 5.54
4209 6314 2.046108 TCTGCTACACTGTGCGGAA 58.954 52.632 7.90 0.00 41.04 4.30
4283 6388 2.441750 GGTACCATTCCTGGAAGCCATA 59.558 50.000 15.34 2.30 46.37 2.74
4286 6391 1.776667 CCATTCCTGGAAGCCATAGGA 59.223 52.381 15.34 0.00 46.37 2.94
4287 6392 2.377869 CCATTCCTGGAAGCCATAGGAT 59.622 50.000 15.34 0.00 46.37 3.24
4288 6393 3.588842 CCATTCCTGGAAGCCATAGGATA 59.411 47.826 15.34 0.00 46.37 2.59
4289 6394 4.229123 CCATTCCTGGAAGCCATAGGATAT 59.771 45.833 15.34 0.00 46.37 1.63
4290 6395 5.281401 CCATTCCTGGAAGCCATAGGATATT 60.281 44.000 15.34 0.00 46.37 1.28
4291 6396 6.069440 CCATTCCTGGAAGCCATAGGATATTA 60.069 42.308 15.34 0.00 46.37 0.98
4292 6397 6.627087 TTCCTGGAAGCCATAGGATATTAG 57.373 41.667 4.68 0.00 40.13 1.73
4293 6398 5.032846 TCCTGGAAGCCATAGGATATTAGG 58.967 45.833 0.00 0.00 35.76 2.69
4294 6399 5.032846 CCTGGAAGCCATAGGATATTAGGA 58.967 45.833 0.00 0.00 33.33 2.94
4295 6400 5.669447 CCTGGAAGCCATAGGATATTAGGAT 59.331 44.000 0.00 0.00 33.33 3.24
4296 6401 6.409005 CCTGGAAGCCATAGGATATTAGGATG 60.409 46.154 0.00 0.00 33.33 3.51
4297 6402 5.429762 TGGAAGCCATAGGATATTAGGATGG 59.570 44.000 0.00 0.00 40.11 3.51
4298 6403 5.667626 GGAAGCCATAGGATATTAGGATGGA 59.332 44.000 3.41 0.00 39.61 3.41
4299 6404 6.331307 GGAAGCCATAGGATATTAGGATGGAT 59.669 42.308 3.41 0.00 39.61 3.41
4316 6421 0.976641 GATACGATCTGGATGGCCCA 59.023 55.000 0.00 0.00 44.25 5.36
4318 6423 2.319025 TACGATCTGGATGGCCCATA 57.681 50.000 0.00 0.00 45.57 2.74
4319 6424 0.979665 ACGATCTGGATGGCCCATAG 59.020 55.000 0.00 0.00 45.57 2.23
4320 6425 0.251354 CGATCTGGATGGCCCATAGG 59.749 60.000 0.00 0.00 45.57 2.57
4321 6426 1.366319 GATCTGGATGGCCCATAGGT 58.634 55.000 0.00 0.00 45.57 3.08
4322 6427 1.707427 GATCTGGATGGCCCATAGGTT 59.293 52.381 0.00 0.00 45.57 3.50
4323 6428 1.607225 TCTGGATGGCCCATAGGTTT 58.393 50.000 0.00 0.00 45.57 3.27
4324 6429 1.929494 TCTGGATGGCCCATAGGTTTT 59.071 47.619 0.00 0.00 45.57 2.43
4325 6430 2.034124 CTGGATGGCCCATAGGTTTTG 58.966 52.381 0.00 0.00 45.57 2.44
4326 6431 1.342874 TGGATGGCCCATAGGTTTTGG 60.343 52.381 0.00 0.00 40.82 3.28
4327 6432 1.342975 GGATGGCCCATAGGTTTTGGT 60.343 52.381 0.00 0.00 34.57 3.67
4328 6433 2.466846 GATGGCCCATAGGTTTTGGTT 58.533 47.619 0.00 0.00 34.57 3.67
4329 6434 3.628769 GGATGGCCCATAGGTTTTGGTTA 60.629 47.826 0.00 0.00 34.57 2.85
4330 6435 3.544698 TGGCCCATAGGTTTTGGTTAA 57.455 42.857 0.00 0.00 34.57 2.01
4331 6436 3.858135 TGGCCCATAGGTTTTGGTTAAA 58.142 40.909 0.00 0.00 34.57 1.52
4332 6437 3.579151 TGGCCCATAGGTTTTGGTTAAAC 59.421 43.478 0.00 0.00 44.39 2.01
4333 6438 3.367600 GGCCCATAGGTTTTGGTTAAACG 60.368 47.826 0.00 0.00 45.75 3.60
4334 6439 3.367600 GCCCATAGGTTTTGGTTAAACGG 60.368 47.826 0.00 0.00 45.75 4.44
4335 6440 4.080687 CCCATAGGTTTTGGTTAAACGGA 58.919 43.478 0.00 0.00 45.75 4.69
4379 6493 5.833131 TGCTAAAAAGTGATTTTGACCTCCT 59.167 36.000 0.00 0.00 41.29 3.69
4384 6498 2.573915 AGTGATTTTGACCTCCTCCCTC 59.426 50.000 0.00 0.00 0.00 4.30
4385 6499 2.305927 GTGATTTTGACCTCCTCCCTCA 59.694 50.000 0.00 0.00 0.00 3.86
4389 6503 4.469469 TTTTGACCTCCTCCCTCAAAAT 57.531 40.909 0.00 0.00 38.41 1.82
4391 6505 4.569719 TTGACCTCCTCCCTCAAAATAC 57.430 45.455 0.00 0.00 0.00 1.89
4392 6506 3.803340 TGACCTCCTCCCTCAAAATACT 58.197 45.455 0.00 0.00 0.00 2.12
4393 6507 3.775316 TGACCTCCTCCCTCAAAATACTC 59.225 47.826 0.00 0.00 0.00 2.59
4394 6508 3.116174 ACCTCCTCCCTCAAAATACTCC 58.884 50.000 0.00 0.00 0.00 3.85
4395 6509 2.439880 CCTCCTCCCTCAAAATACTCCC 59.560 54.545 0.00 0.00 0.00 4.30
4396 6510 3.388913 CTCCTCCCTCAAAATACTCCCT 58.611 50.000 0.00 0.00 0.00 4.20
4397 6511 3.385115 TCCTCCCTCAAAATACTCCCTC 58.615 50.000 0.00 0.00 0.00 4.30
4398 6512 2.439880 CCTCCCTCAAAATACTCCCTCC 59.560 54.545 0.00 0.00 0.00 4.30
4399 6513 2.103263 CTCCCTCAAAATACTCCCTCCG 59.897 54.545 0.00 0.00 0.00 4.63
4400 6514 1.838077 CCCTCAAAATACTCCCTCCGT 59.162 52.381 0.00 0.00 0.00 4.69
4401 6515 3.036091 CCCTCAAAATACTCCCTCCGTA 58.964 50.000 0.00 0.00 0.00 4.02
4402 6516 3.453353 CCCTCAAAATACTCCCTCCGTAA 59.547 47.826 0.00 0.00 0.00 3.18
4403 6517 4.080751 CCCTCAAAATACTCCCTCCGTAAA 60.081 45.833 0.00 0.00 0.00 2.01
4404 6518 4.874396 CCTCAAAATACTCCCTCCGTAAAC 59.126 45.833 0.00 0.00 0.00 2.01
4405 6519 5.338137 CCTCAAAATACTCCCTCCGTAAACT 60.338 44.000 0.00 0.00 0.00 2.66
4406 6520 6.127253 CCTCAAAATACTCCCTCCGTAAACTA 60.127 42.308 0.00 0.00 0.00 2.24
4407 6521 7.243604 TCAAAATACTCCCTCCGTAAACTAA 57.756 36.000 0.00 0.00 0.00 2.24
4408 6522 7.854337 TCAAAATACTCCCTCCGTAAACTAAT 58.146 34.615 0.00 0.00 0.00 1.73
4409 6523 8.980596 TCAAAATACTCCCTCCGTAAACTAATA 58.019 33.333 0.00 0.00 0.00 0.98
4410 6524 9.774413 CAAAATACTCCCTCCGTAAACTAATAT 57.226 33.333 0.00 0.00 0.00 1.28
4415 6529 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
4416 6530 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
4417 6531 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
4418 6532 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
4419 6533 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
4420 6534 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
4450 6564 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
4451 6565 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
4452 6566 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
4453 6567 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
4468 6582 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
4469 6583 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
4470 6584 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
4471 6585 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
4487 6601 5.692204 CAGAGGGAGTATGTATTTAACTGCG 59.308 44.000 0.00 0.00 32.89 5.18
4553 6667 0.464036 AGCAGTCTTTGGTCACGTGA 59.536 50.000 15.76 15.76 29.81 4.35
4572 6686 4.862018 CGTGACACATTTGAAGTGGTTTTT 59.138 37.500 6.37 0.00 41.21 1.94
4585 6699 3.632145 AGTGGTTTTTAGCACCTGAACTG 59.368 43.478 4.07 0.00 35.07 3.16
4587 6701 2.360801 GGTTTTTAGCACCTGAACTGCA 59.639 45.455 0.00 0.00 37.08 4.41
4599 6713 2.340337 TGAACTGCACATCATCGTCTG 58.660 47.619 0.00 0.00 0.00 3.51
4600 6714 2.289010 TGAACTGCACATCATCGTCTGT 60.289 45.455 0.00 0.00 0.00 3.41
4601 6715 1.718396 ACTGCACATCATCGTCTGTG 58.282 50.000 0.00 0.00 44.40 3.66
4602 6716 1.001293 ACTGCACATCATCGTCTGTGT 59.999 47.619 4.78 0.00 43.66 3.72
4610 6724 0.792640 CATCGTCTGTGTGGCAAGTC 59.207 55.000 0.00 0.00 0.00 3.01
4625 6739 2.222027 CAAGTCCAAGTCACACCCTTC 58.778 52.381 0.00 0.00 0.00 3.46
4626 6740 1.507140 AGTCCAAGTCACACCCTTCA 58.493 50.000 0.00 0.00 0.00 3.02
4644 6758 7.702348 CACCCTTCACTCAAAACTTCTAAAAAG 59.298 37.037 0.00 0.00 0.00 2.27
4646 6760 8.131731 CCCTTCACTCAAAACTTCTAAAAAGAG 58.868 37.037 0.00 0.00 0.00 2.85
4647 6761 8.893727 CCTTCACTCAAAACTTCTAAAAAGAGA 58.106 33.333 0.00 0.00 0.00 3.10
4661 6775 9.983804 TTCTAAAAAGAGAAGAAGAAAAACGTC 57.016 29.630 0.00 0.00 31.72 4.34
4708 6822 4.411540 TGTACTCCTAGATAGAACCCTCGT 59.588 45.833 0.00 0.00 0.00 4.18
4709 6823 3.822940 ACTCCTAGATAGAACCCTCGTG 58.177 50.000 0.00 0.00 0.00 4.35
4710 6824 3.202595 ACTCCTAGATAGAACCCTCGTGT 59.797 47.826 0.00 0.00 0.00 4.49
4711 6825 3.816523 CTCCTAGATAGAACCCTCGTGTC 59.183 52.174 0.00 0.00 0.00 3.67
4712 6826 3.201487 TCCTAGATAGAACCCTCGTGTCA 59.799 47.826 0.00 0.00 0.00 3.58
4713 6827 3.315749 CCTAGATAGAACCCTCGTGTCAC 59.684 52.174 0.00 0.00 0.00 3.67
4714 6828 3.088789 AGATAGAACCCTCGTGTCACT 57.911 47.619 0.65 0.00 0.00 3.41
4715 6829 3.432378 AGATAGAACCCTCGTGTCACTT 58.568 45.455 0.65 0.00 0.00 3.16
4716 6830 3.193691 AGATAGAACCCTCGTGTCACTTG 59.806 47.826 0.65 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.554395 CCCACACATATAAACAAGTGTATATCA 57.446 33.333 0.00 0.00 42.79 2.15
2 3 9.555727 ACCCACACATATAAACAAGTGTATATC 57.444 33.333 0.00 0.00 42.79 1.63
3 4 9.555727 GACCCACACATATAAACAAGTGTATAT 57.444 33.333 0.00 0.00 42.79 0.86
4 5 8.764558 AGACCCACACATATAAACAAGTGTATA 58.235 33.333 0.00 0.00 42.79 1.47
5 6 7.552687 CAGACCCACACATATAAACAAGTGTAT 59.447 37.037 0.00 0.00 42.79 2.29
6 7 6.876789 CAGACCCACACATATAAACAAGTGTA 59.123 38.462 0.00 0.00 42.79 2.90
7 8 5.705441 CAGACCCACACATATAAACAAGTGT 59.295 40.000 0.00 0.00 45.29 3.55
8 9 5.937540 TCAGACCCACACATATAAACAAGTG 59.062 40.000 0.00 0.00 37.95 3.16
9 10 5.938125 GTCAGACCCACACATATAAACAAGT 59.062 40.000 0.00 0.00 0.00 3.16
10 11 5.354234 GGTCAGACCCACACATATAAACAAG 59.646 44.000 8.65 0.00 30.04 3.16
11 12 5.013704 AGGTCAGACCCACACATATAAACAA 59.986 40.000 16.72 0.00 39.75 2.83
12 13 4.534500 AGGTCAGACCCACACATATAAACA 59.466 41.667 16.72 0.00 39.75 2.83
13 14 5.099042 AGGTCAGACCCACACATATAAAC 57.901 43.478 16.72 0.00 39.75 2.01
14 15 5.772393 AAGGTCAGACCCACACATATAAA 57.228 39.130 16.72 0.00 39.75 1.40
15 16 6.877668 TTAAGGTCAGACCCACACATATAA 57.122 37.500 16.72 1.21 39.75 0.98
16 17 6.239204 CGATTAAGGTCAGACCCACACATATA 60.239 42.308 16.72 0.00 39.75 0.86
17 18 5.453339 CGATTAAGGTCAGACCCACACATAT 60.453 44.000 16.72 0.72 39.75 1.78
18 19 4.142026 CGATTAAGGTCAGACCCACACATA 60.142 45.833 16.72 0.00 39.75 2.29
19 20 3.369471 CGATTAAGGTCAGACCCACACAT 60.369 47.826 16.72 1.65 39.75 3.21
20 21 2.028476 CGATTAAGGTCAGACCCACACA 60.028 50.000 16.72 0.00 39.75 3.72
21 22 2.232941 TCGATTAAGGTCAGACCCACAC 59.767 50.000 16.72 3.92 39.75 3.82
22 23 2.531771 TCGATTAAGGTCAGACCCACA 58.468 47.619 16.72 0.00 39.75 4.17
23 24 3.458189 CATCGATTAAGGTCAGACCCAC 58.542 50.000 16.72 2.88 39.75 4.61
24 25 2.158957 GCATCGATTAAGGTCAGACCCA 60.159 50.000 16.72 1.29 39.75 4.51
25 26 2.484889 GCATCGATTAAGGTCAGACCC 58.515 52.381 16.72 0.00 39.75 4.46
26 27 2.484889 GGCATCGATTAAGGTCAGACC 58.515 52.381 12.25 12.25 38.99 3.85
27 28 2.158957 TGGGCATCGATTAAGGTCAGAC 60.159 50.000 0.00 0.00 0.00 3.51
28 29 2.115427 TGGGCATCGATTAAGGTCAGA 58.885 47.619 0.00 0.00 0.00 3.27
29 30 2.620251 TGGGCATCGATTAAGGTCAG 57.380 50.000 0.00 0.00 0.00 3.51
30 31 3.576078 ATTGGGCATCGATTAAGGTCA 57.424 42.857 0.00 0.00 0.00 4.02
31 32 4.918810 AAATTGGGCATCGATTAAGGTC 57.081 40.909 0.00 0.00 0.00 3.85
32 33 5.675684 AAAAATTGGGCATCGATTAAGGT 57.324 34.783 0.00 0.00 0.00 3.50
51 52 1.435515 GCCCGCACACTGTGAAAAA 59.564 52.632 15.86 0.00 35.23 1.94
52 53 2.829206 CGCCCGCACACTGTGAAAA 61.829 57.895 15.86 0.00 35.23 2.29
53 54 3.276091 CGCCCGCACACTGTGAAA 61.276 61.111 15.86 0.00 35.23 2.69
61 62 2.523453 TATTTAGCACCGCCCGCACA 62.523 55.000 0.00 0.00 0.00 4.57
62 63 1.164041 ATATTTAGCACCGCCCGCAC 61.164 55.000 0.00 0.00 0.00 5.34
63 64 0.393448 TATATTTAGCACCGCCCGCA 59.607 50.000 0.00 0.00 0.00 5.69
64 65 1.734163 ATATATTTAGCACCGCCCGC 58.266 50.000 0.00 0.00 0.00 6.13
65 66 3.749088 TGAAATATATTTAGCACCGCCCG 59.251 43.478 10.68 0.00 0.00 6.13
66 67 5.648092 AGATGAAATATATTTAGCACCGCCC 59.352 40.000 10.68 0.00 0.00 6.13
67 68 6.403636 CCAGATGAAATATATTTAGCACCGCC 60.404 42.308 10.68 0.00 0.00 6.13
68 69 6.149474 ACCAGATGAAATATATTTAGCACCGC 59.851 38.462 10.68 0.00 0.00 5.68
69 70 7.672983 ACCAGATGAAATATATTTAGCACCG 57.327 36.000 10.68 1.46 0.00 4.94
79 80 7.976175 GCAGACGATGATACCAGATGAAATATA 59.024 37.037 0.00 0.00 0.00 0.86
80 81 6.815641 GCAGACGATGATACCAGATGAAATAT 59.184 38.462 0.00 0.00 0.00 1.28
81 82 6.159293 GCAGACGATGATACCAGATGAAATA 58.841 40.000 0.00 0.00 0.00 1.40
82 83 4.993584 GCAGACGATGATACCAGATGAAAT 59.006 41.667 0.00 0.00 0.00 2.17
83 84 4.371786 GCAGACGATGATACCAGATGAAA 58.628 43.478 0.00 0.00 0.00 2.69
84 85 3.550842 CGCAGACGATGATACCAGATGAA 60.551 47.826 0.00 0.00 43.93 2.57
85 86 2.030805 CGCAGACGATGATACCAGATGA 60.031 50.000 0.00 0.00 43.93 2.92
86 87 2.287849 ACGCAGACGATGATACCAGATG 60.288 50.000 0.00 0.00 43.93 2.90
87 88 1.957177 ACGCAGACGATGATACCAGAT 59.043 47.619 0.00 0.00 43.93 2.90
88 89 1.065551 CACGCAGACGATGATACCAGA 59.934 52.381 0.00 0.00 43.93 3.86
89 90 1.481240 CACGCAGACGATGATACCAG 58.519 55.000 0.00 0.00 43.93 4.00
90 91 0.102300 CCACGCAGACGATGATACCA 59.898 55.000 0.00 0.00 43.93 3.25
91 92 1.215655 GCCACGCAGACGATGATACC 61.216 60.000 0.00 0.00 43.93 2.73
92 93 0.527600 TGCCACGCAGACGATGATAC 60.528 55.000 0.00 0.00 43.93 2.24
93 94 0.389025 ATGCCACGCAGACGATGATA 59.611 50.000 0.00 0.00 43.65 2.15
94 95 0.389025 TATGCCACGCAGACGATGAT 59.611 50.000 0.00 0.00 43.65 2.45
95 96 0.389025 ATATGCCACGCAGACGATGA 59.611 50.000 0.00 0.00 43.65 2.92
96 97 1.220529 AATATGCCACGCAGACGATG 58.779 50.000 0.00 0.00 43.65 3.84
97 98 1.953559 AAATATGCCACGCAGACGAT 58.046 45.000 0.00 0.00 43.65 3.73
98 99 1.732941 AAAATATGCCACGCAGACGA 58.267 45.000 0.00 0.00 43.65 4.20
99 100 2.159585 TGAAAAATATGCCACGCAGACG 60.160 45.455 0.00 0.00 43.65 4.18
100 101 3.126858 TCTGAAAAATATGCCACGCAGAC 59.873 43.478 0.00 0.00 43.65 3.51
101 102 3.342719 TCTGAAAAATATGCCACGCAGA 58.657 40.909 0.00 0.00 43.65 4.26
102 103 3.127548 ACTCTGAAAAATATGCCACGCAG 59.872 43.478 0.00 0.00 43.65 5.18
103 104 3.081061 ACTCTGAAAAATATGCCACGCA 58.919 40.909 0.00 0.00 44.86 5.24
104 105 3.764885 ACTCTGAAAAATATGCCACGC 57.235 42.857 0.00 0.00 0.00 5.34
105 106 4.853196 CACAACTCTGAAAAATATGCCACG 59.147 41.667 0.00 0.00 0.00 4.94
106 107 5.163513 CCACAACTCTGAAAAATATGCCAC 58.836 41.667 0.00 0.00 0.00 5.01
107 108 4.321899 GCCACAACTCTGAAAAATATGCCA 60.322 41.667 0.00 0.00 0.00 4.92
108 109 4.176271 GCCACAACTCTGAAAAATATGCC 58.824 43.478 0.00 0.00 0.00 4.40
109 110 4.808558 TGCCACAACTCTGAAAAATATGC 58.191 39.130 0.00 0.00 0.00 3.14
110 111 5.740569 CGATGCCACAACTCTGAAAAATATG 59.259 40.000 0.00 0.00 0.00 1.78
111 112 5.647658 TCGATGCCACAACTCTGAAAAATAT 59.352 36.000 0.00 0.00 0.00 1.28
112 113 5.000591 TCGATGCCACAACTCTGAAAAATA 58.999 37.500 0.00 0.00 0.00 1.40
113 114 3.820467 TCGATGCCACAACTCTGAAAAAT 59.180 39.130 0.00 0.00 0.00 1.82
114 115 3.210227 TCGATGCCACAACTCTGAAAAA 58.790 40.909 0.00 0.00 0.00 1.94
115 116 2.844946 TCGATGCCACAACTCTGAAAA 58.155 42.857 0.00 0.00 0.00 2.29
116 117 2.542020 TCGATGCCACAACTCTGAAA 57.458 45.000 0.00 0.00 0.00 2.69
117 118 2.143122 GTTCGATGCCACAACTCTGAA 58.857 47.619 0.00 0.00 0.00 3.02
118 119 1.069978 TGTTCGATGCCACAACTCTGA 59.930 47.619 0.00 0.00 0.00 3.27
119 120 1.195448 GTGTTCGATGCCACAACTCTG 59.805 52.381 5.74 0.00 0.00 3.35
120 121 1.202639 TGTGTTCGATGCCACAACTCT 60.203 47.619 9.76 0.00 38.56 3.24
121 122 1.225855 TGTGTTCGATGCCACAACTC 58.774 50.000 9.76 0.00 38.56 3.01
122 123 1.896220 ATGTGTTCGATGCCACAACT 58.104 45.000 14.51 0.62 44.10 3.16
123 124 2.287547 ACAATGTGTTCGATGCCACAAC 60.288 45.455 14.51 0.00 44.10 3.32
124 125 1.952990 ACAATGTGTTCGATGCCACAA 59.047 42.857 14.51 2.62 44.10 3.33
125 126 1.266446 CACAATGTGTTCGATGCCACA 59.734 47.619 5.00 13.34 44.91 4.17
126 127 1.401409 CCACAATGTGTTCGATGCCAC 60.401 52.381 12.79 0.00 0.00 5.01
127 128 0.880441 CCACAATGTGTTCGATGCCA 59.120 50.000 12.79 0.00 0.00 4.92
128 129 1.164411 TCCACAATGTGTTCGATGCC 58.836 50.000 12.79 0.00 0.00 4.40
129 130 2.414559 CCTTCCACAATGTGTTCGATGC 60.415 50.000 12.79 0.00 0.00 3.91
130 131 2.414559 GCCTTCCACAATGTGTTCGATG 60.415 50.000 12.79 5.10 0.00 3.84
131 132 1.812571 GCCTTCCACAATGTGTTCGAT 59.187 47.619 12.79 0.00 0.00 3.59
132 133 1.234821 GCCTTCCACAATGTGTTCGA 58.765 50.000 12.79 0.00 0.00 3.71
133 134 0.240945 GGCCTTCCACAATGTGTTCG 59.759 55.000 12.79 0.00 0.00 3.95
134 135 1.620822 AGGCCTTCCACAATGTGTTC 58.379 50.000 12.79 0.00 33.74 3.18
135 136 2.086610 AAGGCCTTCCACAATGTGTT 57.913 45.000 13.78 0.00 33.74 3.32
136 137 2.969821 TAAGGCCTTCCACAATGTGT 57.030 45.000 24.49 0.00 33.74 3.72
137 138 3.885297 CCTATAAGGCCTTCCACAATGTG 59.115 47.826 24.49 6.37 33.74 3.21
138 139 3.117512 CCCTATAAGGCCTTCCACAATGT 60.118 47.826 24.49 0.00 32.73 2.71
139 140 3.138283 TCCCTATAAGGCCTTCCACAATG 59.862 47.826 24.49 6.15 32.73 2.82
140 141 3.403322 TCCCTATAAGGCCTTCCACAAT 58.597 45.455 24.49 12.32 32.73 2.71
141 142 2.853430 TCCCTATAAGGCCTTCCACAA 58.147 47.619 24.49 3.81 32.73 3.33
142 143 2.579624 TCCCTATAAGGCCTTCCACA 57.420 50.000 24.49 4.29 32.73 4.17
143 144 3.046374 TCTTCCCTATAAGGCCTTCCAC 58.954 50.000 24.49 0.00 32.73 4.02
144 145 3.431411 TCTTCCCTATAAGGCCTTCCA 57.569 47.619 24.49 5.67 32.73 3.53
145 146 3.974642 TCTTCTTCCCTATAAGGCCTTCC 59.025 47.826 24.49 0.00 32.73 3.46
146 147 5.367060 TCTTCTTCTTCCCTATAAGGCCTTC 59.633 44.000 24.49 0.00 32.73 3.46
147 148 5.289510 TCTTCTTCTTCCCTATAAGGCCTT 58.710 41.667 24.18 24.18 32.73 4.35
148 149 4.897051 TCTTCTTCTTCCCTATAAGGCCT 58.103 43.478 0.00 0.00 32.73 5.19
149 150 5.546110 AGATCTTCTTCTTCCCTATAAGGCC 59.454 44.000 0.00 0.00 32.73 5.19
150 151 6.268847 TCAGATCTTCTTCTTCCCTATAAGGC 59.731 42.308 0.00 0.00 32.73 4.35
151 152 7.847711 TCAGATCTTCTTCTTCCCTATAAGG 57.152 40.000 0.00 0.00 34.30 2.69
152 153 9.927668 GATTCAGATCTTCTTCTTCCCTATAAG 57.072 37.037 0.00 0.00 0.00 1.73
153 154 9.667607 AGATTCAGATCTTCTTCTTCCCTATAA 57.332 33.333 0.00 0.00 39.63 0.98
154 155 9.087871 CAGATTCAGATCTTCTTCTTCCCTATA 57.912 37.037 0.00 0.00 40.67 1.31
155 156 7.473228 GCAGATTCAGATCTTCTTCTTCCCTAT 60.473 40.741 0.00 0.00 40.67 2.57
156 157 6.183360 GCAGATTCAGATCTTCTTCTTCCCTA 60.183 42.308 0.00 0.00 40.67 3.53
157 158 5.396660 GCAGATTCAGATCTTCTTCTTCCCT 60.397 44.000 0.00 0.00 40.67 4.20
158 159 4.815846 GCAGATTCAGATCTTCTTCTTCCC 59.184 45.833 0.00 0.00 40.67 3.97
159 160 5.426504 TGCAGATTCAGATCTTCTTCTTCC 58.573 41.667 0.00 0.00 40.67 3.46
160 161 6.987992 AGATGCAGATTCAGATCTTCTTCTTC 59.012 38.462 0.00 0.00 40.67 2.87
161 162 6.764085 CAGATGCAGATTCAGATCTTCTTCTT 59.236 38.462 0.00 0.00 40.67 2.52
162 163 6.126997 ACAGATGCAGATTCAGATCTTCTTCT 60.127 38.462 0.00 0.00 40.67 2.85
163 164 6.050432 ACAGATGCAGATTCAGATCTTCTTC 58.950 40.000 0.00 0.00 40.67 2.87
164 165 5.991861 ACAGATGCAGATTCAGATCTTCTT 58.008 37.500 0.00 0.00 40.67 2.52
165 166 5.617528 ACAGATGCAGATTCAGATCTTCT 57.382 39.130 0.00 0.00 40.67 2.85
166 167 6.458478 CCAAACAGATGCAGATTCAGATCTTC 60.458 42.308 0.00 0.00 40.67 2.87
167 168 5.357314 CCAAACAGATGCAGATTCAGATCTT 59.643 40.000 0.00 0.00 40.67 2.40
168 169 4.882427 CCAAACAGATGCAGATTCAGATCT 59.118 41.667 0.00 0.00 43.43 2.75
169 170 4.880120 TCCAAACAGATGCAGATTCAGATC 59.120 41.667 0.00 0.00 0.00 2.75
170 171 4.639310 GTCCAAACAGATGCAGATTCAGAT 59.361 41.667 0.00 0.00 0.00 2.90
171 172 4.005650 GTCCAAACAGATGCAGATTCAGA 58.994 43.478 0.00 0.00 0.00 3.27
172 173 4.008330 AGTCCAAACAGATGCAGATTCAG 58.992 43.478 0.00 0.00 0.00 3.02
173 174 4.025040 AGTCCAAACAGATGCAGATTCA 57.975 40.909 0.00 0.00 0.00 2.57
174 175 5.423015 TCTAGTCCAAACAGATGCAGATTC 58.577 41.667 0.00 0.00 0.00 2.52
175 176 5.426504 CTCTAGTCCAAACAGATGCAGATT 58.573 41.667 0.00 0.00 0.00 2.40
176 177 4.682859 GCTCTAGTCCAAACAGATGCAGAT 60.683 45.833 0.00 0.00 0.00 2.90
177 178 3.368843 GCTCTAGTCCAAACAGATGCAGA 60.369 47.826 0.00 0.00 0.00 4.26
178 179 2.935201 GCTCTAGTCCAAACAGATGCAG 59.065 50.000 0.00 0.00 0.00 4.41
179 180 2.355108 GGCTCTAGTCCAAACAGATGCA 60.355 50.000 0.00 0.00 0.00 3.96
180 181 2.284190 GGCTCTAGTCCAAACAGATGC 58.716 52.381 0.00 0.00 0.00 3.91
181 182 2.911484 GGGCTCTAGTCCAAACAGATG 58.089 52.381 0.00 0.00 40.23 2.90
267 268 0.978907 AAGCAAAGGAAATGGGCTGG 59.021 50.000 0.00 0.00 34.56 4.85
435 465 3.646715 CGGGGCAGGAACTTGGGA 61.647 66.667 0.00 0.00 34.60 4.37
438 468 1.672356 CAGACGGGGCAGGAACTTG 60.672 63.158 0.00 0.00 34.60 3.16
449 479 2.701780 CGAGACAGGGACAGACGGG 61.702 68.421 0.00 0.00 0.00 5.28
455 485 2.282251 ACGCTCGAGACAGGGACA 60.282 61.111 18.75 0.00 0.00 4.02
486 525 3.041940 CTCCACCGTTGTCGTGGC 61.042 66.667 2.02 0.00 37.78 5.01
558 597 1.679032 GGTCAAGAACGGGGGAGAATG 60.679 57.143 0.00 0.00 0.00 2.67
1076 1119 1.807886 GTACGGTGAGTCGCTGGAT 59.192 57.895 16.70 0.00 0.00 3.41
1080 1123 0.098376 GATTCGTACGGTGAGTCGCT 59.902 55.000 16.52 0.00 0.00 4.93
1088 1131 0.248907 CATGGAGCGATTCGTACGGT 60.249 55.000 16.52 4.46 43.87 4.83
1198 1256 0.036010 CTACCACTGAGGGCCAACAG 60.036 60.000 22.78 22.78 43.89 3.16
1280 1368 1.239347 GGGCTTCTTCACTGTTGACC 58.761 55.000 0.00 0.00 0.00 4.02
1287 1375 1.556911 ACGATGATGGGCTTCTTCACT 59.443 47.619 0.00 0.00 33.23 3.41
1600 1970 3.953612 TGGTTGCCAATCAGTTATCATCC 59.046 43.478 0.00 0.00 0.00 3.51
1699 2239 0.320771 AGTGCTACACAGAAAGGGCG 60.321 55.000 0.00 0.00 36.74 6.13
2069 2692 6.760770 TCCAGGAATGATTTTTCACAACAAAC 59.239 34.615 0.00 0.00 0.00 2.93
2122 2751 3.068448 TGCTCAAGACATGCAAACACAAT 59.932 39.130 0.00 0.00 33.48 2.71
2547 3183 8.186163 ACATCATCAGCAAAGTTGTAATATGTG 58.814 33.333 0.00 0.00 0.00 3.21
2691 3328 7.771361 TGTGGTTCGCCTAAAGAAATATGAATA 59.229 33.333 0.00 0.00 38.36 1.75
2867 3507 7.318141 CCTGTAACAAAAATCATCAGCAAGAT 58.682 34.615 0.00 0.00 37.48 2.40
2879 3519 7.973944 GCGAATAATCTTCCCTGTAACAAAAAT 59.026 33.333 0.00 0.00 0.00 1.82
2885 3525 4.117685 ACGCGAATAATCTTCCCTGTAAC 58.882 43.478 15.93 0.00 0.00 2.50
2941 3593 6.751157 TCCTAAAACTTCGTCATAGTGAACA 58.249 36.000 0.00 0.00 0.00 3.18
3024 3676 9.694137 GTAATGTAAGCTAGAACCGAAATATCT 57.306 33.333 0.00 0.00 0.00 1.98
3127 3789 5.299279 CCCAACAGCATTCGTAAATCCTAAT 59.701 40.000 0.00 0.00 0.00 1.73
3219 3890 9.725019 AACTGAATATGTTGACATTCTGACTTA 57.275 29.630 1.46 0.00 37.76 2.24
3307 3981 3.243201 GCCAGACTGAACAAGGAAACAAG 60.243 47.826 3.32 0.00 0.00 3.16
3346 4021 4.525912 AGGATCATGTCAAACCAAAAGC 57.474 40.909 0.00 0.00 0.00 3.51
3411 4086 3.063510 TCCTTCTCAATGACCAAGCTG 57.936 47.619 0.00 0.00 0.00 4.24
3546 5251 0.321210 CTACCATGACAACCACGGCA 60.321 55.000 0.00 0.00 0.00 5.69
3580 5422 7.366191 GGACCCCCTGAAAGAGTTACATTATAA 60.366 40.741 0.00 0.00 34.07 0.98
3584 5426 3.010250 GGACCCCCTGAAAGAGTTACATT 59.990 47.826 0.00 0.00 34.07 2.71
3693 5535 0.683504 TTCCCTACTGAGTCCGAGGC 60.684 60.000 0.00 0.00 0.00 4.70
3750 5594 4.330250 CCTCCCCAACAATAGCATCTATG 58.670 47.826 0.00 0.00 0.00 2.23
3854 5783 4.437239 AGAGATGTCGATCCACAATGAAC 58.563 43.478 0.00 0.00 0.00 3.18
3855 5784 4.743057 AGAGATGTCGATCCACAATGAA 57.257 40.909 0.00 0.00 0.00 2.57
3870 5799 9.390795 CAAAGTTGATCAAGTTTACAAGAGATG 57.609 33.333 31.17 17.96 40.76 2.90
3878 5807 7.149128 GCGATTCACAAAGTTGATCAAGTTTAC 60.149 37.037 31.17 19.53 40.76 2.01
3904 5838 0.878523 TCGTTCACAAAGAGCCACCG 60.879 55.000 0.00 0.00 0.00 4.94
3909 5843 6.017933 CACTGATTTATCGTTCACAAAGAGC 58.982 40.000 0.00 0.00 0.00 4.09
3918 5852 4.870426 TCAGCTTCCACTGATTTATCGTTC 59.130 41.667 0.00 0.00 41.72 3.95
3943 5877 5.765182 AGAACCAGTCCAAGATGTTAAACAG 59.235 40.000 0.00 0.00 0.00 3.16
3945 5879 5.048713 CCAGAACCAGTCCAAGATGTTAAAC 60.049 44.000 0.00 0.00 0.00 2.01
3946 5880 5.070001 CCAGAACCAGTCCAAGATGTTAAA 58.930 41.667 0.00 0.00 0.00 1.52
3957 5891 4.410400 CCCGCCCAGAACCAGTCC 62.410 72.222 0.00 0.00 0.00 3.85
3981 5915 0.813184 ATGAAATGGAGCACGGCAAG 59.187 50.000 0.00 0.00 0.00 4.01
3982 5916 1.067706 CAATGAAATGGAGCACGGCAA 60.068 47.619 0.00 0.00 0.00 4.52
3986 5920 2.598589 CCAACAATGAAATGGAGCACG 58.401 47.619 0.00 0.00 36.27 5.34
3987 5921 2.932187 GCCCAACAATGAAATGGAGCAC 60.932 50.000 6.17 0.00 36.27 4.40
3999 5933 3.220940 CAAAACAATTGGGCCCAACAAT 58.779 40.909 39.44 24.77 40.07 2.71
4011 5945 3.775261 ATTCAGGCTGCCAAAACAATT 57.225 38.095 22.65 0.00 0.00 2.32
4012 5946 4.467082 TGATATTCAGGCTGCCAAAACAAT 59.533 37.500 22.65 12.54 0.00 2.71
4022 5956 3.750130 CGGAGGAAATGATATTCAGGCTG 59.250 47.826 8.58 8.58 0.00 4.85
4033 6109 2.224090 TGAAACACGACGGAGGAAATGA 60.224 45.455 0.00 0.00 0.00 2.57
4039 6115 0.944311 CCTGTGAAACACGACGGAGG 60.944 60.000 0.00 0.00 45.67 4.30
4042 6118 1.495584 CCACCTGTGAAACACGACGG 61.496 60.000 0.00 0.00 45.67 4.79
4047 6123 3.003689 CACTCATTCCACCTGTGAAACAC 59.996 47.826 0.00 0.00 45.67 3.32
4064 6169 2.625790 GGTAAACATGTTTGCCCACTCA 59.374 45.455 35.41 13.30 45.66 3.41
4065 6170 3.297830 GGTAAACATGTTTGCCCACTC 57.702 47.619 35.41 18.12 45.66 3.51
4071 6176 6.851609 TGTATGATCAGGTAAACATGTTTGC 58.148 36.000 29.72 27.69 34.98 3.68
4081 6186 7.178274 AGGCAAAAATGTTGTATGATCAGGTAA 59.822 33.333 0.09 0.00 0.00 2.85
4084 6189 5.969423 AGGCAAAAATGTTGTATGATCAGG 58.031 37.500 0.09 0.00 0.00 3.86
4090 6195 6.252015 CAGAATCGAGGCAAAAATGTTGTATG 59.748 38.462 0.00 0.00 0.00 2.39
4107 6212 3.930229 CCAAACATTCGGTACAGAATCGA 59.070 43.478 17.01 2.77 38.66 3.59
4111 6216 2.156098 GGCCAAACATTCGGTACAGAA 58.844 47.619 10.92 10.92 34.31 3.02
4126 6231 3.834489 TTTCAGAGCATTTTTGGCCAA 57.166 38.095 16.05 16.05 0.00 4.52
4127 6232 3.834489 TTTTCAGAGCATTTTTGGCCA 57.166 38.095 0.00 0.00 0.00 5.36
4128 6233 3.437741 CCATTTTCAGAGCATTTTTGGCC 59.562 43.478 0.00 0.00 0.00 5.36
4129 6234 4.067192 ACCATTTTCAGAGCATTTTTGGC 58.933 39.130 0.00 0.00 0.00 4.52
4164 6269 1.187974 ACATGTTGATGGTGCCATGG 58.812 50.000 7.63 7.63 39.14 3.66
4168 6273 4.519540 AAAACTACATGTTGATGGTGCC 57.480 40.909 14.37 0.00 39.13 5.01
4192 6297 1.016130 CCTTCCGCACAGTGTAGCAG 61.016 60.000 15.02 6.56 0.00 4.24
4195 6300 0.320771 AAGCCTTCCGCACAGTGTAG 60.321 55.000 1.61 0.00 41.38 2.74
4204 6309 2.735444 GCCTTTTATGAAAGCCTTCCGC 60.735 50.000 4.47 0.00 40.75 5.54
4208 6313 3.190383 AGGGCCTTTTATGAAAGCCTT 57.810 42.857 0.00 10.71 40.75 4.35
4209 6314 2.928036 AGGGCCTTTTATGAAAGCCT 57.072 45.000 0.00 11.25 40.75 4.58
4249 6354 4.459337 GGAATGGTACCAGGAAAACTTGAG 59.541 45.833 21.41 0.00 0.00 3.02
4250 6355 4.105697 AGGAATGGTACCAGGAAAACTTGA 59.894 41.667 21.41 0.00 0.00 3.02
4283 6388 6.780031 CCAGATCGTATCCATCCTAATATCCT 59.220 42.308 0.00 0.00 0.00 3.24
4286 6391 7.234371 CCATCCAGATCGTATCCATCCTAATAT 59.766 40.741 0.00 0.00 0.00 1.28
4287 6392 6.551227 CCATCCAGATCGTATCCATCCTAATA 59.449 42.308 0.00 0.00 0.00 0.98
4288 6393 5.365025 CCATCCAGATCGTATCCATCCTAAT 59.635 44.000 0.00 0.00 0.00 1.73
4289 6394 4.711846 CCATCCAGATCGTATCCATCCTAA 59.288 45.833 0.00 0.00 0.00 2.69
4290 6395 4.281657 CCATCCAGATCGTATCCATCCTA 58.718 47.826 0.00 0.00 0.00 2.94
4291 6396 3.102972 CCATCCAGATCGTATCCATCCT 58.897 50.000 0.00 0.00 0.00 3.24
4292 6397 2.419297 GCCATCCAGATCGTATCCATCC 60.419 54.545 0.00 0.00 0.00 3.51
4293 6398 2.419297 GGCCATCCAGATCGTATCCATC 60.419 54.545 0.00 0.00 0.00 3.51
4294 6399 1.556911 GGCCATCCAGATCGTATCCAT 59.443 52.381 0.00 0.00 0.00 3.41
4295 6400 0.976641 GGCCATCCAGATCGTATCCA 59.023 55.000 0.00 0.00 0.00 3.41
4296 6401 0.250513 GGGCCATCCAGATCGTATCC 59.749 60.000 4.39 0.00 35.00 2.59
4297 6402 0.976641 TGGGCCATCCAGATCGTATC 59.023 55.000 0.00 0.00 41.46 2.24
4298 6403 3.164024 TGGGCCATCCAGATCGTAT 57.836 52.632 0.00 0.00 41.46 3.06
4299 6404 4.718143 TGGGCCATCCAGATCGTA 57.282 55.556 0.00 0.00 41.46 3.43
4318 6423 9.863845 CATTTTATATCCGTTTAACCAAAACCT 57.136 29.630 0.00 0.00 43.90 3.50
4319 6424 9.642327 ACATTTTATATCCGTTTAACCAAAACC 57.358 29.630 0.00 0.00 43.90 3.27
4331 6436 8.936864 GCAGATAGCTTTACATTTTATATCCGT 58.063 33.333 0.00 0.00 41.15 4.69
4350 6464 8.734386 AGGTCAAAATCACTTTTTAGCAGATAG 58.266 33.333 0.00 0.00 35.75 2.08
4358 6472 5.773176 GGGAGGAGGTCAAAATCACTTTTTA 59.227 40.000 0.00 0.00 35.75 1.52
4366 6480 3.721087 TTGAGGGAGGAGGTCAAAATC 57.279 47.619 0.00 0.00 0.00 2.17
4367 6481 4.469469 TTTTGAGGGAGGAGGTCAAAAT 57.531 40.909 5.57 0.00 42.44 1.82
4379 6493 2.116238 CGGAGGGAGTATTTTGAGGGA 58.884 52.381 0.00 0.00 0.00 4.20
4384 6498 9.774413 ATATTAGTTTACGGAGGGAGTATTTTG 57.226 33.333 0.00 0.00 0.00 2.44
4389 6503 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
4391 6505 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
4392 6506 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
4393 6507 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
4394 6508 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
4426 6540 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
4427 6541 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
4442 6556 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
4443 6557 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
4444 6558 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
4445 6559 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
4446 6560 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
4460 6574 8.202137 GCAGTTAAATACATACTCCCTCTGTAA 58.798 37.037 0.00 0.00 0.00 2.41
4461 6575 7.469594 CGCAGTTAAATACATACTCCCTCTGTA 60.470 40.741 0.00 0.00 0.00 2.74
4462 6576 6.583562 GCAGTTAAATACATACTCCCTCTGT 58.416 40.000 0.00 0.00 0.00 3.41
4463 6577 5.692204 CGCAGTTAAATACATACTCCCTCTG 59.308 44.000 0.00 0.00 0.00 3.35
4464 6578 5.363005 ACGCAGTTAAATACATACTCCCTCT 59.637 40.000 0.00 0.00 37.78 3.69
4465 6579 5.598769 ACGCAGTTAAATACATACTCCCTC 58.401 41.667 0.00 0.00 37.78 4.30
4466 6580 5.609533 ACGCAGTTAAATACATACTCCCT 57.390 39.130 0.00 0.00 37.78 4.20
4525 6639 4.019321 TGACCAAAGACTGCTTTAGGCTAT 60.019 41.667 0.00 0.00 46.93 2.97
4540 6654 3.064682 TCAAATGTGTCACGTGACCAAAG 59.935 43.478 38.12 26.53 44.15 2.77
4553 6667 5.810074 GTGCTAAAAACCACTTCAAATGTGT 59.190 36.000 0.00 0.00 33.92 3.72
4572 6686 1.347378 TGATGTGCAGTTCAGGTGCTA 59.653 47.619 0.00 0.00 41.78 3.49
4587 6701 0.321346 TGCCACACAGACGATGATGT 59.679 50.000 0.00 0.00 0.00 3.06
4610 6724 1.140852 TGAGTGAAGGGTGTGACTTGG 59.859 52.381 0.00 0.00 0.00 3.61
4644 6758 6.618805 GCCACATAGACGTTTTTCTTCTTCTC 60.619 42.308 0.00 0.00 0.00 2.87
4646 6760 5.049680 TGCCACATAGACGTTTTTCTTCTTC 60.050 40.000 0.00 0.00 0.00 2.87
4647 6761 4.819630 TGCCACATAGACGTTTTTCTTCTT 59.180 37.500 0.00 0.00 0.00 2.52
4649 6763 4.742438 TGCCACATAGACGTTTTTCTTC 57.258 40.909 0.00 0.00 0.00 2.87
4650 6764 5.508200 TTTGCCACATAGACGTTTTTCTT 57.492 34.783 0.00 0.00 0.00 2.52
4651 6765 5.298276 TCTTTTGCCACATAGACGTTTTTCT 59.702 36.000 0.00 0.00 0.00 2.52
4652 6766 5.516090 TCTTTTGCCACATAGACGTTTTTC 58.484 37.500 0.00 0.00 0.00 2.29
4653 6767 5.067283 ACTCTTTTGCCACATAGACGTTTTT 59.933 36.000 0.00 0.00 0.00 1.94
4654 6768 4.578928 ACTCTTTTGCCACATAGACGTTTT 59.421 37.500 0.00 0.00 0.00 2.43
4655 6769 4.134563 ACTCTTTTGCCACATAGACGTTT 58.865 39.130 0.00 0.00 0.00 3.60
4656 6770 3.740115 ACTCTTTTGCCACATAGACGTT 58.260 40.909 0.00 0.00 0.00 3.99
4657 6771 3.402628 ACTCTTTTGCCACATAGACGT 57.597 42.857 0.00 0.00 0.00 4.34
4658 6772 3.498397 ACAACTCTTTTGCCACATAGACG 59.502 43.478 0.00 0.00 0.00 4.18
4659 6773 5.438761 AACAACTCTTTTGCCACATAGAC 57.561 39.130 0.00 0.00 0.00 2.59
4660 6774 7.759489 AATAACAACTCTTTTGCCACATAGA 57.241 32.000 0.00 0.00 0.00 1.98
4661 6775 7.867403 ACAAATAACAACTCTTTTGCCACATAG 59.133 33.333 0.00 0.00 33.43 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.