Multiple sequence alignment - TraesCS3B01G042100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G042100 chr3B 100.000 2671 0 0 1 2671 21348117 21345447 0.000000e+00 4933.0
1 TraesCS3B01G042100 chr3B 88.073 1048 101 12 1420 2454 21387382 21386346 0.000000e+00 1221.0
2 TraesCS3B01G042100 chr3B 85.918 561 49 12 890 1439 21388001 21387460 3.350000e-159 571.0
3 TraesCS3B01G042100 chr3B 90.635 299 20 8 113 407 21388991 21388697 1.010000e-104 390.0
4 TraesCS3B01G042100 chr3B 83.138 427 62 9 1048 1472 11231516 11231934 6.070000e-102 381.0
5 TraesCS3B01G042100 chr3B 81.818 253 45 1 2084 2335 11235353 11235605 8.420000e-51 211.0
6 TraesCS3B01G042100 chr3B 100.000 108 0 0 2892 2999 21345226 21345119 1.820000e-47 200.0
7 TraesCS3B01G042100 chr3B 97.297 37 1 0 757 793 742787974 742787938 2.500000e-06 63.9
8 TraesCS3B01G042100 chr3D 90.061 986 87 5 1489 2463 14406637 14405652 0.000000e+00 1267.0
9 TraesCS3B01G042100 chr3D 84.803 1066 110 25 1420 2453 14416115 14415070 0.000000e+00 1024.0
10 TraesCS3B01G042100 chr3D 90.942 552 38 6 890 1433 14416697 14416150 0.000000e+00 732.0
11 TraesCS3B01G042100 chr3D 91.880 468 29 7 975 1433 14407229 14406762 0.000000e+00 645.0
12 TraesCS3B01G042100 chr3D 88.814 295 32 1 425 719 14417191 14416898 7.900000e-96 361.0
13 TraesCS3B01G042100 chr3D 94.690 113 6 0 2467 2579 14405688 14405576 3.070000e-40 176.0
14 TraesCS3B01G042100 chr3A 87.791 1032 103 9 1436 2454 22248073 22249094 0.000000e+00 1186.0
15 TraesCS3B01G042100 chr3A 89.748 556 41 9 890 1433 22247466 22248017 0.000000e+00 697.0
16 TraesCS3B01G042100 chr3A 84.741 367 53 1 1048 1414 11882914 11882551 6.110000e-97 364.0
17 TraesCS3B01G042100 chr7A 86.538 312 42 0 1103 1414 635552571 635552882 7.960000e-91 344.0
18 TraesCS3B01G042100 chr7B 84.984 313 45 2 1103 1414 594763622 594763933 1.740000e-82 316.0
19 TraesCS3B01G042100 chr6A 83.588 262 41 2 1138 1398 106895341 106895081 8.300000e-61 244.0
20 TraesCS3B01G042100 chr7D 94.828 58 2 1 2491 2547 124517561 124517504 4.120000e-14 89.8
21 TraesCS3B01G042100 chr5A 85.057 87 12 1 2493 2579 152885207 152885122 1.480000e-13 87.9
22 TraesCS3B01G042100 chr4B 85.714 56 6 2 2492 2546 96433542 96433488 1.160000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G042100 chr3B 21345119 21348117 2998 True 2566.500000 4933 100.000000 1 2999 2 chr3B.!!$R2 2998
1 TraesCS3B01G042100 chr3B 21386346 21388991 2645 True 727.333333 1221 88.208667 113 2454 3 chr3B.!!$R3 2341
2 TraesCS3B01G042100 chr3B 11231516 11235605 4089 False 296.000000 381 82.478000 1048 2335 2 chr3B.!!$F1 1287
3 TraesCS3B01G042100 chr3D 14415070 14417191 2121 True 705.666667 1024 88.186333 425 2453 3 chr3D.!!$R2 2028
4 TraesCS3B01G042100 chr3D 14405576 14407229 1653 True 696.000000 1267 92.210333 975 2579 3 chr3D.!!$R1 1604
5 TraesCS3B01G042100 chr3A 22247466 22249094 1628 False 941.500000 1186 88.769500 890 2454 2 chr3A.!!$F1 1564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
987 1287 0.035439 CTAGGCCATGTTGGGTCGTT 60.035 55.0 5.01 0.0 38.19 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2964 5698 0.17899 AGAGTGTTGCCCCACTTTCC 60.179 55.0 6.79 0.0 45.46 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.986904 GAGGAAATTTCTCGAACACCTTAT 57.013 37.500 17.42 0.00 0.00 1.73
24 25 6.743575 AGGAAATTTCTCGAACACCTTATG 57.256 37.500 17.42 0.00 0.00 1.90
25 26 5.648092 AGGAAATTTCTCGAACACCTTATGG 59.352 40.000 17.42 0.00 39.83 2.74
26 27 5.646360 GGAAATTTCTCGAACACCTTATGGA 59.354 40.000 17.42 0.00 37.04 3.41
27 28 6.403309 GGAAATTTCTCGAACACCTTATGGAC 60.403 42.308 17.42 0.00 37.04 4.02
28 29 2.933495 TCTCGAACACCTTATGGACG 57.067 50.000 0.81 2.58 37.04 4.79
29 30 2.165167 TCTCGAACACCTTATGGACGT 58.835 47.619 0.81 0.00 37.04 4.34
30 31 2.163010 TCTCGAACACCTTATGGACGTC 59.837 50.000 7.13 7.13 37.04 4.34
31 32 1.203052 TCGAACACCTTATGGACGTCC 59.797 52.381 28.17 28.17 37.04 4.79
32 33 1.636988 GAACACCTTATGGACGTCCG 58.363 55.000 28.70 16.67 39.43 4.79
33 34 1.203052 GAACACCTTATGGACGTCCGA 59.797 52.381 28.70 17.08 39.43 4.55
34 35 1.259609 ACACCTTATGGACGTCCGAA 58.740 50.000 28.70 22.73 39.43 4.30
35 36 1.203994 ACACCTTATGGACGTCCGAAG 59.796 52.381 29.35 29.35 39.43 3.79
36 37 3.661745 CCTTATGGACGTCCGAAGG 57.338 57.895 35.54 35.54 42.02 3.46
37 38 0.529992 CCTTATGGACGTCCGAAGGC 60.530 60.000 36.42 15.39 41.72 4.35
48 49 2.813474 CGAAGGCGATGCGGACAA 60.813 61.111 0.00 0.00 40.82 3.18
49 50 2.802667 CGAAGGCGATGCGGACAAG 61.803 63.158 0.00 0.00 40.82 3.16
50 51 1.741770 GAAGGCGATGCGGACAAGT 60.742 57.895 0.00 0.00 0.00 3.16
51 52 1.970917 GAAGGCGATGCGGACAAGTG 61.971 60.000 0.00 0.00 0.00 3.16
52 53 2.434185 GGCGATGCGGACAAGTGA 60.434 61.111 0.00 0.00 0.00 3.41
53 54 2.032634 GGCGATGCGGACAAGTGAA 61.033 57.895 0.00 0.00 0.00 3.18
54 55 1.573829 GGCGATGCGGACAAGTGAAA 61.574 55.000 0.00 0.00 0.00 2.69
55 56 0.179215 GCGATGCGGACAAGTGAAAG 60.179 55.000 0.00 0.00 0.00 2.62
56 57 0.179215 CGATGCGGACAAGTGAAAGC 60.179 55.000 0.00 0.00 0.00 3.51
57 58 0.179215 GATGCGGACAAGTGAAAGCG 60.179 55.000 0.00 0.00 0.00 4.68
58 59 1.577328 ATGCGGACAAGTGAAAGCGG 61.577 55.000 0.00 0.00 0.00 5.52
59 60 2.251642 GCGGACAAGTGAAAGCGGT 61.252 57.895 0.00 0.00 0.00 5.68
60 61 1.569493 CGGACAAGTGAAAGCGGTG 59.431 57.895 0.00 0.00 0.00 4.94
61 62 1.841663 CGGACAAGTGAAAGCGGTGG 61.842 60.000 0.00 0.00 0.00 4.61
62 63 1.282875 GACAAGTGAAAGCGGTGGC 59.717 57.895 0.00 0.00 40.37 5.01
63 64 1.444119 GACAAGTGAAAGCGGTGGCA 61.444 55.000 0.00 0.00 43.41 4.92
64 65 1.034838 ACAAGTGAAAGCGGTGGCAA 61.035 50.000 0.00 0.00 43.41 4.52
65 66 0.318107 CAAGTGAAAGCGGTGGCAAG 60.318 55.000 0.00 0.00 43.41 4.01
66 67 0.751643 AAGTGAAAGCGGTGGCAAGT 60.752 50.000 0.00 0.00 43.41 3.16
67 68 1.166531 AGTGAAAGCGGTGGCAAGTC 61.167 55.000 0.00 0.00 43.41 3.01
68 69 2.250939 TGAAAGCGGTGGCAAGTCG 61.251 57.895 0.00 0.00 43.41 4.18
69 70 2.966309 GAAAGCGGTGGCAAGTCGG 61.966 63.158 0.00 0.00 43.41 4.79
73 74 4.760047 CGGTGGCAAGTCGGGGAG 62.760 72.222 0.00 0.00 0.00 4.30
74 75 4.410400 GGTGGCAAGTCGGGGAGG 62.410 72.222 0.00 0.00 0.00 4.30
75 76 3.637273 GTGGCAAGTCGGGGAGGT 61.637 66.667 0.00 0.00 0.00 3.85
76 77 3.319198 TGGCAAGTCGGGGAGGTC 61.319 66.667 0.00 0.00 0.00 3.85
77 78 4.097361 GGCAAGTCGGGGAGGTCC 62.097 72.222 0.00 0.00 0.00 4.46
89 90 3.313874 AGGTCCGATGAGCTTGGG 58.686 61.111 0.00 0.00 46.95 4.12
90 91 1.306141 AGGTCCGATGAGCTTGGGA 60.306 57.895 0.00 0.00 46.95 4.37
91 92 0.909610 AGGTCCGATGAGCTTGGGAA 60.910 55.000 0.00 0.00 46.95 3.97
92 93 0.462759 GGTCCGATGAGCTTGGGAAG 60.463 60.000 0.00 0.00 36.07 3.46
100 101 3.741476 GCTTGGGAAGCGTGGCTG 61.741 66.667 0.00 0.00 45.74 4.85
101 102 3.058160 CTTGGGAAGCGTGGCTGG 61.058 66.667 0.00 0.00 39.62 4.85
102 103 4.659172 TTGGGAAGCGTGGCTGGG 62.659 66.667 0.00 0.00 39.62 4.45
104 105 4.785453 GGGAAGCGTGGCTGGGAG 62.785 72.222 0.00 0.00 39.62 4.30
105 106 3.706373 GGAAGCGTGGCTGGGAGA 61.706 66.667 0.00 0.00 39.62 3.71
106 107 2.125350 GAAGCGTGGCTGGGAGAG 60.125 66.667 0.00 0.00 39.62 3.20
107 108 2.604686 AAGCGTGGCTGGGAGAGA 60.605 61.111 0.00 0.00 39.62 3.10
108 109 2.844072 GAAGCGTGGCTGGGAGAGAC 62.844 65.000 0.00 0.00 39.62 3.36
109 110 4.803426 GCGTGGCTGGGAGAGACG 62.803 72.222 0.00 0.00 28.23 4.18
110 111 4.135153 CGTGGCTGGGAGAGACGG 62.135 72.222 0.00 0.00 28.23 4.79
111 112 4.459089 GTGGCTGGGAGAGACGGC 62.459 72.222 0.00 0.00 39.48 5.68
161 163 8.962884 AAAATTGGTTCAAATAGTGCTCTTTT 57.037 26.923 0.00 0.00 0.00 2.27
164 166 5.757886 TGGTTCAAATAGTGCTCTTTTTCG 58.242 37.500 0.00 0.00 0.00 3.46
174 176 6.288426 AGTGCTCTTTTTCGAAGTTAGTTC 57.712 37.500 0.00 0.00 0.00 3.01
181 183 5.488645 TTTTCGAAGTTAGTTCCACAACC 57.511 39.130 0.00 0.00 32.22 3.77
243 247 3.472283 AAAATTTGCAGGCACATCACA 57.528 38.095 0.00 0.00 0.00 3.58
264 268 3.186001 CACATTCGAGCATCTTAGATGGC 59.814 47.826 21.90 14.43 0.00 4.40
269 273 4.454678 TCGAGCATCTTAGATGGCAAAAT 58.545 39.130 21.90 1.22 0.00 1.82
323 328 6.397831 TTTAATTCTACCGTTCATGACACG 57.602 37.500 17.84 17.84 37.39 4.49
415 490 6.802608 TCAATTCCTGTTATACGGTAGTGAG 58.197 40.000 0.00 0.00 0.00 3.51
417 492 5.571784 TTCCTGTTATACGGTAGTGAGTG 57.428 43.478 0.00 0.00 0.00 3.51
423 498 1.081892 TACGGTAGTGAGTGCGACTC 58.918 55.000 8.75 8.75 45.26 3.36
431 506 3.108521 GAGTGCGACTCATGTTCGT 57.891 52.632 16.99 3.68 44.45 3.85
432 507 2.257974 GAGTGCGACTCATGTTCGTA 57.742 50.000 16.99 11.95 44.45 3.43
433 508 2.592194 GAGTGCGACTCATGTTCGTAA 58.408 47.619 16.99 6.97 44.45 3.18
434 509 3.179830 GAGTGCGACTCATGTTCGTAAT 58.820 45.455 16.99 13.33 44.45 1.89
443 610 4.020573 ACTCATGTTCGTAATTCACCTCCA 60.021 41.667 0.00 0.00 0.00 3.86
446 613 3.659786 TGTTCGTAATTCACCTCCACAG 58.340 45.455 0.00 0.00 0.00 3.66
452 619 0.107508 ATTCACCTCCACAGCATCCG 60.108 55.000 0.00 0.00 0.00 4.18
466 633 2.121786 GCATCCGACGCGATAGTTTAA 58.878 47.619 15.93 0.00 39.35 1.52
475 642 6.454054 CCGACGCGATAGTTTAAACAACATTA 60.454 38.462 15.93 4.11 39.35 1.90
476 643 6.618308 CGACGCGATAGTTTAAACAACATTAG 59.382 38.462 15.93 8.22 39.35 1.73
481 648 9.601971 GCGATAGTTTAAACAACATTAGTTTCA 57.398 29.630 20.06 0.00 38.18 2.69
505 672 6.091441 CAGTCTCAATAAAAACTCCCTTCTCG 59.909 42.308 0.00 0.00 0.00 4.04
537 704 1.808343 TGCAGCTGATGTGATCACAAC 59.192 47.619 31.00 27.64 45.41 3.32
539 706 2.227149 GCAGCTGATGTGATCACAACAA 59.773 45.455 30.90 19.57 45.41 2.83
544 711 3.220940 TGATGTGATCACAACAAAGGCA 58.779 40.909 29.92 17.31 45.41 4.75
552 719 1.868498 CACAACAAAGGCAATGGCAAG 59.132 47.619 10.05 0.43 43.71 4.01
553 720 1.485895 ACAACAAAGGCAATGGCAAGT 59.514 42.857 10.05 1.11 43.71 3.16
559 726 3.846754 GCAATGGCAAGTTGCGAC 58.153 55.556 21.11 9.31 46.21 5.19
569 736 3.064271 GGCAAGTTGCGACGGATTTATAA 59.936 43.478 21.11 0.00 46.21 0.98
581 748 6.578545 CGACGGATTTATAATGGCAAATTCTG 59.421 38.462 0.00 0.00 0.00 3.02
585 752 6.424812 GGATTTATAATGGCAAATTCTGTGGC 59.575 38.462 0.00 0.00 41.71 5.01
592 759 3.181457 TGGCAAATTCTGTGGCATTCAAA 60.181 39.130 1.02 0.00 45.61 2.69
605 772 2.073816 CATTCAAACGGGTAGAAGCGT 58.926 47.619 0.00 0.00 0.00 5.07
634 801 9.820725 TCTGATTCTCAAATTGTTGTTGAATTT 57.179 25.926 0.00 0.00 38.18 1.82
703 870 3.189080 CAGAATGCGTGGATGTTTCTTCA 59.811 43.478 0.00 0.00 0.00 3.02
704 871 3.820467 AGAATGCGTGGATGTTTCTTCAA 59.180 39.130 0.00 0.00 0.00 2.69
720 887 4.996793 TCTTCAATGATTGGGAAGGTCAA 58.003 39.130 5.20 0.00 38.78 3.18
721 888 5.012239 TCTTCAATGATTGGGAAGGTCAAG 58.988 41.667 5.20 0.00 38.78 3.02
722 889 4.387026 TCAATGATTGGGAAGGTCAAGT 57.613 40.909 5.20 0.00 0.00 3.16
737 1020 4.095610 GGTCAAGTTTGAGTTTGTGAACG 58.904 43.478 0.00 0.00 40.75 3.95
756 1042 6.643770 GTGAACGATGTACTCCTTGTTTCTTA 59.356 38.462 0.00 0.00 0.00 2.10
787 1075 5.699143 AGCTAGCCATGATGGTATTTTCTT 58.301 37.500 13.84 0.00 40.46 2.52
788 1076 6.841601 AGCTAGCCATGATGGTATTTTCTTA 58.158 36.000 13.84 0.00 40.46 2.10
822 1118 3.813166 TCAGTCTACCCGCAAAAGAAAAG 59.187 43.478 0.00 0.00 0.00 2.27
827 1123 6.037726 GTCTACCCGCAAAAGAAAAGAAAAA 58.962 36.000 0.00 0.00 0.00 1.94
847 1143 6.484364 AAAAACATTGGTTCCAGTCAGATT 57.516 33.333 0.00 0.00 35.82 2.40
848 1144 6.484364 AAAACATTGGTTCCAGTCAGATTT 57.516 33.333 0.00 0.00 35.82 2.17
849 1145 6.484364 AAACATTGGTTCCAGTCAGATTTT 57.516 33.333 0.00 0.00 35.82 1.82
850 1146 6.484364 AACATTGGTTCCAGTCAGATTTTT 57.516 33.333 0.00 0.00 29.00 1.94
851 1147 7.595819 AACATTGGTTCCAGTCAGATTTTTA 57.404 32.000 0.00 0.00 29.00 1.52
852 1148 7.781324 ACATTGGTTCCAGTCAGATTTTTAT 57.219 32.000 0.00 0.00 0.00 1.40
853 1149 8.193953 ACATTGGTTCCAGTCAGATTTTTATT 57.806 30.769 0.00 0.00 0.00 1.40
854 1150 8.090214 ACATTGGTTCCAGTCAGATTTTTATTG 58.910 33.333 0.00 0.00 0.00 1.90
855 1151 7.831691 TTGGTTCCAGTCAGATTTTTATTGA 57.168 32.000 0.00 0.00 0.00 2.57
856 1152 7.452880 TGGTTCCAGTCAGATTTTTATTGAG 57.547 36.000 0.00 0.00 0.00 3.02
857 1153 6.434028 TGGTTCCAGTCAGATTTTTATTGAGG 59.566 38.462 0.00 0.00 0.00 3.86
858 1154 6.127619 GGTTCCAGTCAGATTTTTATTGAGGG 60.128 42.308 0.00 0.00 0.00 4.30
859 1155 5.509498 TCCAGTCAGATTTTTATTGAGGGG 58.491 41.667 0.00 0.00 0.00 4.79
860 1156 5.015178 TCCAGTCAGATTTTTATTGAGGGGT 59.985 40.000 0.00 0.00 0.00 4.95
861 1157 5.716703 CCAGTCAGATTTTTATTGAGGGGTT 59.283 40.000 0.00 0.00 0.00 4.11
862 1158 6.350445 CCAGTCAGATTTTTATTGAGGGGTTG 60.350 42.308 0.00 0.00 0.00 3.77
863 1159 5.716703 AGTCAGATTTTTATTGAGGGGTTGG 59.283 40.000 0.00 0.00 0.00 3.77
864 1160 5.480422 GTCAGATTTTTATTGAGGGGTTGGT 59.520 40.000 0.00 0.00 0.00 3.67
865 1161 6.014584 GTCAGATTTTTATTGAGGGGTTGGTT 60.015 38.462 0.00 0.00 0.00 3.67
866 1162 6.556874 TCAGATTTTTATTGAGGGGTTGGTTT 59.443 34.615 0.00 0.00 0.00 3.27
867 1163 6.873605 CAGATTTTTATTGAGGGGTTGGTTTC 59.126 38.462 0.00 0.00 0.00 2.78
868 1164 4.857509 TTTTATTGAGGGGTTGGTTTCG 57.142 40.909 0.00 0.00 0.00 3.46
869 1165 2.500392 TATTGAGGGGTTGGTTTCGG 57.500 50.000 0.00 0.00 0.00 4.30
870 1166 0.481128 ATTGAGGGGTTGGTTTCGGT 59.519 50.000 0.00 0.00 0.00 4.69
871 1167 0.179012 TTGAGGGGTTGGTTTCGGTC 60.179 55.000 0.00 0.00 0.00 4.79
872 1168 1.346479 TGAGGGGTTGGTTTCGGTCA 61.346 55.000 0.00 0.00 0.00 4.02
873 1169 0.605589 GAGGGGTTGGTTTCGGTCAG 60.606 60.000 0.00 0.00 0.00 3.51
874 1170 1.057851 AGGGGTTGGTTTCGGTCAGA 61.058 55.000 0.00 0.00 0.00 3.27
875 1171 0.037734 GGGGTTGGTTTCGGTCAGAT 59.962 55.000 0.00 0.00 0.00 2.90
876 1172 1.546998 GGGGTTGGTTTCGGTCAGATT 60.547 52.381 0.00 0.00 0.00 2.40
877 1173 2.235891 GGGTTGGTTTCGGTCAGATTT 58.764 47.619 0.00 0.00 0.00 2.17
878 1174 2.626266 GGGTTGGTTTCGGTCAGATTTT 59.374 45.455 0.00 0.00 0.00 1.82
879 1175 3.069016 GGGTTGGTTTCGGTCAGATTTTT 59.931 43.478 0.00 0.00 0.00 1.94
916 1213 3.737266 TCAGTCGGTAATGTCACGTTTTC 59.263 43.478 0.00 0.00 0.00 2.29
921 1218 5.403466 GTCGGTAATGTCACGTTTTCTTAGT 59.597 40.000 0.00 0.00 0.00 2.24
938 1237 5.302360 TCTTAGTGATAGTGGCACGTTTTT 58.698 37.500 12.71 0.00 41.04 1.94
983 1283 2.990740 TTTTCTAGGCCATGTTGGGT 57.009 45.000 5.01 0.00 38.19 4.51
987 1287 0.035439 CTAGGCCATGTTGGGTCGTT 60.035 55.000 5.01 0.00 38.19 3.85
1002 1305 1.732259 GTCGTTAGAGCCCACACAATG 59.268 52.381 0.00 0.00 0.00 2.82
1027 1339 1.200020 CTGTCGCTGAAATGAAACCCC 59.800 52.381 0.00 0.00 0.00 4.95
1030 1342 1.885887 TCGCTGAAATGAAACCCCAAG 59.114 47.619 0.00 0.00 0.00 3.61
1032 1344 2.607771 CGCTGAAATGAAACCCCAAGTG 60.608 50.000 0.00 0.00 0.00 3.16
1218 1530 4.680237 CGCACCTTCCTGGACGCA 62.680 66.667 0.00 0.00 39.71 5.24
1239 1551 4.130281 CGTTCGTCGCCCGCTTTC 62.130 66.667 0.00 0.00 36.19 2.62
1240 1552 3.785499 GTTCGTCGCCCGCTTTCC 61.785 66.667 0.00 0.00 36.19 3.13
1414 1739 0.037232 CCCAGTCCTCAAAGACGACC 60.037 60.000 0.00 0.00 41.83 4.79
1434 1798 3.041940 GCCGTGTCCGTTCCTGTG 61.042 66.667 0.00 0.00 0.00 3.66
1438 1907 3.948719 TGTCCGTTCCTGTGCCCC 61.949 66.667 0.00 0.00 0.00 5.80
1443 1912 3.897122 GTTCCTGTGCCCCCACCA 61.897 66.667 0.00 0.00 41.35 4.17
1485 1954 0.036294 TCTCTGGCTCTCGAGACGAA 60.036 55.000 12.08 0.00 40.06 3.85
1613 2103 1.004758 CCCTGGATCTCTTCCCCCA 59.995 63.158 0.00 0.00 44.77 4.96
1644 2152 4.500116 GAGGACTGCGAGGGCGAC 62.500 72.222 0.00 0.00 44.10 5.19
1653 2161 0.102481 GCGAGGGCGACTATTCTGAA 59.898 55.000 0.00 0.00 40.82 3.02
1655 2163 2.803492 GCGAGGGCGACTATTCTGAATT 60.803 50.000 8.38 0.00 40.82 2.17
1666 2174 7.652727 CGACTATTCTGAATTCTACATCCTCA 58.347 38.462 8.38 0.00 0.00 3.86
1684 2195 4.127171 CCTCACCGAAAAAGAAGAAGACA 58.873 43.478 0.00 0.00 0.00 3.41
1694 2205 2.213499 AGAAGAAGACAACTTGCCGTG 58.787 47.619 0.00 0.00 36.39 4.94
1761 2272 2.431057 GGTCTTATCATCGGACACCAGT 59.569 50.000 0.00 0.00 0.00 4.00
1766 2278 3.802948 ATCATCGGACACCAGTAAGTC 57.197 47.619 0.00 0.00 0.00 3.01
1791 2303 3.205056 AGATTTTCCCATGGGCAGACATA 59.795 43.478 27.41 3.53 34.68 2.29
1833 2345 1.614317 GGTAAGCTGGTGAATGGCTGT 60.614 52.381 0.00 0.00 36.37 4.40
1844 2356 5.104151 TGGTGAATGGCTGTATCTATTGGAA 60.104 40.000 0.00 0.00 0.00 3.53
1845 2357 6.006449 GGTGAATGGCTGTATCTATTGGAAT 58.994 40.000 0.00 0.00 0.00 3.01
1865 2380 0.186873 ATTGGGATGACTGATGCCCC 59.813 55.000 0.00 0.00 42.00 5.80
1870 2385 2.257409 GATGACTGATGCCCCCGTGT 62.257 60.000 0.00 0.00 0.00 4.49
1898 2413 4.634883 CACTGCTACAATGCAATTCTCTCT 59.365 41.667 0.00 0.00 42.83 3.10
1920 2435 0.179032 TGGATAATCCGCCGCACATT 60.179 50.000 0.00 0.00 40.17 2.71
2009 2525 1.678728 GGGCCACTGACATTCGAATCA 60.679 52.381 7.92 4.38 0.00 2.57
2071 2590 1.905215 AGAGAGGTGGATGTTGGACAG 59.095 52.381 0.00 0.00 0.00 3.51
2081 2600 0.692756 TGTTGGACAGGTCACTCCCA 60.693 55.000 1.41 0.00 36.75 4.37
2116 2635 1.826096 TGGAATCGTTCGGTGTGGATA 59.174 47.619 0.00 0.00 0.00 2.59
2201 2720 3.157087 CTCTGCTTATTGTGGGGTGTTT 58.843 45.455 0.00 0.00 0.00 2.83
2203 2722 1.883275 TGCTTATTGTGGGGTGTTTCG 59.117 47.619 0.00 0.00 0.00 3.46
2258 2777 1.666553 CGTGGAAACAGCGGTGCTA 60.667 57.895 15.82 0.00 44.46 3.49
2287 2806 1.144057 GTCGCATCCCTAGTGGTGG 59.856 63.158 0.00 0.00 34.77 4.61
2377 2899 1.557832 CCCTCGGATCAAGGTTGGTTA 59.442 52.381 11.33 0.00 31.51 2.85
2439 2965 7.944729 ATCATTAAGTTGTGAACTATTGCCT 57.055 32.000 0.00 0.00 41.91 4.75
2440 2966 7.759489 TCATTAAGTTGTGAACTATTGCCTT 57.241 32.000 0.00 0.00 41.91 4.35
2441 2967 7.592938 TCATTAAGTTGTGAACTATTGCCTTG 58.407 34.615 0.00 0.00 41.91 3.61
2442 2968 3.923017 AGTTGTGAACTATTGCCTTGC 57.077 42.857 0.00 0.00 40.69 4.01
2443 2969 2.558359 AGTTGTGAACTATTGCCTTGCC 59.442 45.455 0.00 0.00 40.69 4.52
2444 2970 2.284754 TGTGAACTATTGCCTTGCCA 57.715 45.000 0.00 0.00 0.00 4.92
2445 2971 2.806434 TGTGAACTATTGCCTTGCCAT 58.194 42.857 0.00 0.00 0.00 4.40
2446 2972 2.492881 TGTGAACTATTGCCTTGCCATG 59.507 45.455 0.00 0.00 0.00 3.66
2447 2973 2.101783 TGAACTATTGCCTTGCCATGG 58.898 47.619 7.63 7.63 0.00 3.66
2448 2974 2.102578 GAACTATTGCCTTGCCATGGT 58.897 47.619 14.67 0.00 27.64 3.55
2449 2975 3.287222 GAACTATTGCCTTGCCATGGTA 58.713 45.455 14.67 5.86 26.72 3.25
2450 2976 3.600448 ACTATTGCCTTGCCATGGTAT 57.400 42.857 14.67 0.00 0.00 2.73
2451 2977 3.914771 ACTATTGCCTTGCCATGGTATT 58.085 40.909 14.67 0.00 0.00 1.89
2452 2978 4.289245 ACTATTGCCTTGCCATGGTATTT 58.711 39.130 14.67 0.00 0.00 1.40
2453 2979 4.716287 ACTATTGCCTTGCCATGGTATTTT 59.284 37.500 14.67 0.00 0.00 1.82
2454 2980 4.573021 ATTGCCTTGCCATGGTATTTTT 57.427 36.364 14.67 0.00 0.00 1.94
2526 3052 3.855853 GAGGCTTCTCCCCGGCTC 61.856 72.222 0.00 0.00 43.97 4.70
2579 3105 3.015327 ACAAATCAGCTCATTGAGAGGC 58.985 45.455 17.87 3.05 44.86 4.70
2580 3106 3.014623 CAAATCAGCTCATTGAGAGGCA 58.985 45.455 17.87 0.00 44.86 4.75
2581 3107 2.623878 ATCAGCTCATTGAGAGGCAG 57.376 50.000 17.87 0.38 44.86 4.85
2582 3108 1.273759 TCAGCTCATTGAGAGGCAGT 58.726 50.000 17.87 0.00 44.86 4.40
2583 3109 1.066358 TCAGCTCATTGAGAGGCAGTG 60.066 52.381 17.87 4.49 44.86 3.66
2584 3110 0.252479 AGCTCATTGAGAGGCAGTGG 59.748 55.000 17.87 0.00 44.86 4.00
2586 3112 1.078918 TCATTGAGAGGCAGTGGCG 60.079 57.895 11.51 0.00 42.47 5.69
2587 3113 2.110967 CATTGAGAGGCAGTGGCGG 61.111 63.158 11.51 0.00 42.47 6.13
2588 3114 2.293318 ATTGAGAGGCAGTGGCGGA 61.293 57.895 11.51 0.00 42.47 5.54
2589 3115 2.249413 ATTGAGAGGCAGTGGCGGAG 62.249 60.000 11.51 0.00 42.47 4.63
2603 3129 2.591915 CGGAGCCAGGAAACTAGGA 58.408 57.895 0.00 0.00 40.21 2.94
2604 3130 1.123928 CGGAGCCAGGAAACTAGGAT 58.876 55.000 0.00 0.00 40.21 3.24
2605 3131 1.069358 CGGAGCCAGGAAACTAGGATC 59.931 57.143 0.00 0.00 40.81 3.36
2607 3133 2.103941 GGAGCCAGGAAACTAGGATCAG 59.896 54.545 0.00 0.00 42.26 2.90
2608 3134 2.103941 GAGCCAGGAAACTAGGATCAGG 59.896 54.545 0.00 0.00 41.04 3.86
2610 3136 2.158885 GCCAGGAAACTAGGATCAGGAC 60.159 54.545 0.00 0.00 40.21 3.85
2611 3137 2.101582 CCAGGAAACTAGGATCAGGACG 59.898 54.545 0.00 0.00 40.21 4.79
2613 3139 1.202545 GGAAACTAGGATCAGGACGGC 60.203 57.143 0.00 0.00 0.00 5.68
2614 3140 1.757699 GAAACTAGGATCAGGACGGCT 59.242 52.381 0.00 0.00 0.00 5.52
2616 3142 0.757188 ACTAGGATCAGGACGGCTGG 60.757 60.000 0.00 0.00 0.00 4.85
2618 3144 0.188587 TAGGATCAGGACGGCTGGAT 59.811 55.000 0.00 0.00 0.00 3.41
2619 3145 1.070445 GGATCAGGACGGCTGGATG 59.930 63.158 0.00 0.00 0.00 3.51
2620 3146 1.596477 GATCAGGACGGCTGGATGC 60.596 63.158 0.00 0.00 41.94 3.91
2629 3155 2.262572 CGGCTGGATGCTGTTAAAAC 57.737 50.000 0.00 0.00 42.87 2.43
2630 3156 1.812571 CGGCTGGATGCTGTTAAAACT 59.187 47.619 0.00 0.00 42.87 2.66
2631 3157 3.006940 CGGCTGGATGCTGTTAAAACTA 58.993 45.455 0.00 0.00 42.87 2.24
2634 3160 5.393027 CGGCTGGATGCTGTTAAAACTAATT 60.393 40.000 0.00 0.00 42.87 1.40
2635 3161 6.183360 CGGCTGGATGCTGTTAAAACTAATTA 60.183 38.462 0.00 0.00 42.87 1.40
2636 3162 7.196331 GGCTGGATGCTGTTAAAACTAATTAG 58.804 38.462 11.05 11.05 42.39 1.73
2637 3163 7.196331 GCTGGATGCTGTTAAAACTAATTAGG 58.804 38.462 16.73 0.00 38.95 2.69
2638 3164 7.639113 TGGATGCTGTTAAAACTAATTAGGG 57.361 36.000 16.73 0.00 0.00 3.53
2639 3165 7.406916 TGGATGCTGTTAAAACTAATTAGGGA 58.593 34.615 16.73 0.00 0.00 4.20
2640 3166 7.556275 TGGATGCTGTTAAAACTAATTAGGGAG 59.444 37.037 16.73 0.00 0.00 4.30
2641 3167 7.013369 GGATGCTGTTAAAACTAATTAGGGAGG 59.987 40.741 16.73 0.00 0.00 4.30
2643 3169 6.882678 TGCTGTTAAAACTAATTAGGGAGGAC 59.117 38.462 16.73 9.70 0.00 3.85
2644 3170 6.318144 GCTGTTAAAACTAATTAGGGAGGACC 59.682 42.308 16.73 0.40 40.67 4.46
2645 3171 7.332433 TGTTAAAACTAATTAGGGAGGACCA 57.668 36.000 16.73 2.80 43.89 4.02
2646 3172 7.399634 TGTTAAAACTAATTAGGGAGGACCAG 58.600 38.462 16.73 0.00 43.89 4.00
2647 3173 7.017850 TGTTAAAACTAATTAGGGAGGACCAGT 59.982 37.037 16.73 0.00 43.89 4.00
2648 3174 5.695424 AAACTAATTAGGGAGGACCAGTC 57.305 43.478 16.73 0.00 43.89 3.51
2649 3175 4.628661 ACTAATTAGGGAGGACCAGTCT 57.371 45.455 16.73 0.00 43.89 3.24
2651 3177 5.456779 ACTAATTAGGGAGGACCAGTCTAC 58.543 45.833 16.73 0.00 43.89 2.59
2652 3178 4.348020 AATTAGGGAGGACCAGTCTACA 57.652 45.455 0.00 0.00 43.89 2.74
2909 5643 3.439494 CTGAGAGGAGCAGTTCAGC 57.561 57.895 0.00 0.00 31.68 4.26
2910 5644 0.607112 CTGAGAGGAGCAGTTCAGCA 59.393 55.000 0.00 0.00 36.85 4.41
2911 5645 1.001746 CTGAGAGGAGCAGTTCAGCAA 59.998 52.381 0.00 0.00 36.85 3.91
2912 5646 1.417517 TGAGAGGAGCAGTTCAGCAAA 59.582 47.619 0.00 0.00 36.85 3.68
2913 5647 2.039480 TGAGAGGAGCAGTTCAGCAAAT 59.961 45.455 0.00 0.00 36.85 2.32
2914 5648 2.419324 GAGAGGAGCAGTTCAGCAAATG 59.581 50.000 0.00 0.00 36.85 2.32
2915 5649 2.039480 AGAGGAGCAGTTCAGCAAATGA 59.961 45.455 0.00 0.00 36.85 2.57
2916 5650 2.816087 GAGGAGCAGTTCAGCAAATGAA 59.184 45.455 0.00 0.00 45.79 2.57
2927 5661 6.653526 TTCAGCAAATGAAATCTGGAAGAA 57.346 33.333 0.00 0.00 44.93 2.52
2928 5662 6.653526 TCAGCAAATGAAATCTGGAAGAAA 57.346 33.333 0.00 0.00 40.49 2.52
2929 5663 7.053316 TCAGCAAATGAAATCTGGAAGAAAA 57.947 32.000 0.00 0.00 40.49 2.29
2930 5664 6.925165 TCAGCAAATGAAATCTGGAAGAAAAC 59.075 34.615 0.00 0.00 40.49 2.43
2931 5665 7.417683 TCAGCAAATGAAATCTGGAAGAAAACA 60.418 33.333 0.00 0.00 40.49 2.83
2940 5674 5.934935 TCTGGAAGAAAACAATACGGTTC 57.065 39.130 0.00 0.00 42.31 3.62
2941 5675 5.617252 TCTGGAAGAAAACAATACGGTTCT 58.383 37.500 0.00 0.00 42.31 3.01
2942 5676 6.761312 TCTGGAAGAAAACAATACGGTTCTA 58.239 36.000 0.00 0.00 42.31 2.10
2943 5677 6.647895 TCTGGAAGAAAACAATACGGTTCTAC 59.352 38.462 0.00 0.00 42.31 2.59
2944 5678 6.289834 TGGAAGAAAACAATACGGTTCTACA 58.710 36.000 0.00 0.00 30.24 2.74
2945 5679 6.766944 TGGAAGAAAACAATACGGTTCTACAA 59.233 34.615 0.00 0.00 30.24 2.41
2946 5680 7.446013 TGGAAGAAAACAATACGGTTCTACAAT 59.554 33.333 0.00 0.00 30.24 2.71
2947 5681 8.938906 GGAAGAAAACAATACGGTTCTACAATA 58.061 33.333 0.00 0.00 30.24 1.90
2948 5682 9.968743 GAAGAAAACAATACGGTTCTACAATAG 57.031 33.333 0.00 0.00 30.24 1.73
2949 5683 9.498176 AAGAAAACAATACGGTTCTACAATAGT 57.502 29.630 0.00 0.00 30.24 2.12
2950 5684 9.498176 AGAAAACAATACGGTTCTACAATAGTT 57.502 29.630 0.00 0.00 0.00 2.24
2952 5686 9.887406 AAAACAATACGGTTCTACAATAGTTTG 57.113 29.630 0.00 0.00 38.86 2.93
2953 5687 7.605410 ACAATACGGTTCTACAATAGTTTGG 57.395 36.000 0.00 0.00 37.15 3.28
2954 5688 6.093082 ACAATACGGTTCTACAATAGTTTGGC 59.907 38.462 0.00 0.00 37.15 4.52
2955 5689 4.010667 ACGGTTCTACAATAGTTTGGCA 57.989 40.909 0.00 0.00 37.15 4.92
2956 5690 4.585879 ACGGTTCTACAATAGTTTGGCAT 58.414 39.130 0.00 0.00 37.15 4.40
2957 5691 4.394920 ACGGTTCTACAATAGTTTGGCATG 59.605 41.667 0.00 0.00 37.15 4.06
2958 5692 4.672409 GGTTCTACAATAGTTTGGCATGC 58.328 43.478 9.90 9.90 37.15 4.06
2959 5693 4.157656 GGTTCTACAATAGTTTGGCATGCA 59.842 41.667 21.36 2.54 37.15 3.96
2960 5694 5.163519 GGTTCTACAATAGTTTGGCATGCAT 60.164 40.000 21.36 0.00 37.15 3.96
2961 5695 5.503662 TCTACAATAGTTTGGCATGCATG 57.496 39.130 22.70 22.70 37.15 4.06
2971 5705 4.798288 CATGCATGCCGGAAAGTG 57.202 55.556 14.93 0.00 0.00 3.16
2972 5706 1.140161 CATGCATGCCGGAAAGTGG 59.860 57.895 14.93 0.00 0.00 4.00
2973 5707 2.053865 ATGCATGCCGGAAAGTGGG 61.054 57.895 16.68 0.00 0.00 4.61
2974 5708 3.451894 GCATGCCGGAAAGTGGGG 61.452 66.667 5.05 0.00 0.00 4.96
2978 5712 3.680786 GCCGGAAAGTGGGGCAAC 61.681 66.667 5.05 0.00 46.13 4.17
2979 5713 2.203422 CCGGAAAGTGGGGCAACA 60.203 61.111 0.00 0.00 39.74 3.33
2980 5714 2.561037 CCGGAAAGTGGGGCAACAC 61.561 63.158 0.00 3.67 44.44 3.32
2988 5722 1.954927 GTGGGGCAACACTCTATAGC 58.045 55.000 4.55 0.00 44.55 2.97
2989 5723 0.837272 TGGGGCAACACTCTATAGCC 59.163 55.000 0.00 0.00 44.55 3.93
2990 5724 0.249911 GGGGCAACACTCTATAGCCG 60.250 60.000 0.00 0.00 46.12 5.52
2991 5725 0.880718 GGGCAACACTCTATAGCCGC 60.881 60.000 0.00 0.00 46.12 6.53
2992 5726 0.179084 GGCAACACTCTATAGCCGCA 60.179 55.000 0.00 0.00 35.42 5.69
2993 5727 1.541233 GGCAACACTCTATAGCCGCAT 60.541 52.381 0.00 0.00 35.42 4.73
2994 5728 1.795286 GCAACACTCTATAGCCGCATC 59.205 52.381 0.00 0.00 0.00 3.91
2995 5729 2.803133 GCAACACTCTATAGCCGCATCA 60.803 50.000 0.00 0.00 0.00 3.07
2996 5730 2.797156 CAACACTCTATAGCCGCATCAC 59.203 50.000 0.00 0.00 0.00 3.06
2997 5731 2.031870 ACACTCTATAGCCGCATCACA 58.968 47.619 0.00 0.00 0.00 3.58
2998 5732 2.630098 ACACTCTATAGCCGCATCACAT 59.370 45.455 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.183360 CCATAAGGTGTTCGAGAAATTTCCTC 60.183 42.308 14.61 10.28 0.00 3.71
1 2 5.648092 CCATAAGGTGTTCGAGAAATTTCCT 59.352 40.000 14.61 2.40 0.00 3.36
2 3 5.646360 TCCATAAGGTGTTCGAGAAATTTCC 59.354 40.000 14.61 5.69 35.89 3.13
3 4 6.543736 GTCCATAAGGTGTTCGAGAAATTTC 58.456 40.000 10.33 10.33 35.89 2.17
4 5 5.121768 CGTCCATAAGGTGTTCGAGAAATTT 59.878 40.000 0.00 0.00 35.89 1.82
5 6 4.630069 CGTCCATAAGGTGTTCGAGAAATT 59.370 41.667 0.00 0.00 35.89 1.82
6 7 4.181578 CGTCCATAAGGTGTTCGAGAAAT 58.818 43.478 0.00 0.00 35.89 2.17
7 8 3.006110 ACGTCCATAAGGTGTTCGAGAAA 59.994 43.478 0.00 0.00 35.89 2.52
8 9 2.559668 ACGTCCATAAGGTGTTCGAGAA 59.440 45.455 0.00 0.00 35.89 2.87
9 10 2.163010 GACGTCCATAAGGTGTTCGAGA 59.837 50.000 3.51 0.00 35.89 4.04
10 11 2.527100 GACGTCCATAAGGTGTTCGAG 58.473 52.381 3.51 0.00 35.89 4.04
11 12 1.203052 GGACGTCCATAAGGTGTTCGA 59.797 52.381 29.75 0.00 35.89 3.71
12 13 1.636988 GGACGTCCATAAGGTGTTCG 58.363 55.000 29.75 0.00 35.89 3.95
13 14 1.203052 TCGGACGTCCATAAGGTGTTC 59.797 52.381 32.80 2.71 35.89 3.18
14 15 1.259609 TCGGACGTCCATAAGGTGTT 58.740 50.000 32.80 0.00 35.89 3.32
15 16 1.203994 CTTCGGACGTCCATAAGGTGT 59.796 52.381 32.80 0.00 35.89 4.16
16 17 1.470979 CCTTCGGACGTCCATAAGGTG 60.471 57.143 36.13 22.87 40.92 4.00
17 18 0.822164 CCTTCGGACGTCCATAAGGT 59.178 55.000 36.13 0.00 40.92 3.50
18 19 0.529992 GCCTTCGGACGTCCATAAGG 60.530 60.000 38.19 38.19 45.08 2.69
19 20 0.870307 CGCCTTCGGACGTCCATAAG 60.870 60.000 32.80 29.99 35.14 1.73
20 21 1.140161 CGCCTTCGGACGTCCATAA 59.860 57.895 32.80 23.79 35.14 1.90
21 22 1.105167 ATCGCCTTCGGACGTCCATA 61.105 55.000 32.80 18.36 36.13 2.74
22 23 2.423898 ATCGCCTTCGGACGTCCAT 61.424 57.895 32.80 14.93 36.13 3.41
23 24 3.066190 ATCGCCTTCGGACGTCCA 61.066 61.111 32.80 17.85 36.13 4.02
24 25 2.582498 CATCGCCTTCGGACGTCC 60.582 66.667 25.28 25.28 36.13 4.79
25 26 3.255379 GCATCGCCTTCGGACGTC 61.255 66.667 7.13 7.13 36.13 4.34
28 29 4.508128 TCCGCATCGCCTTCGGAC 62.508 66.667 0.00 0.00 46.12 4.79
30 31 4.812476 TGTCCGCATCGCCTTCGG 62.812 66.667 0.00 0.00 44.16 4.30
31 32 2.802667 CTTGTCCGCATCGCCTTCG 61.803 63.158 0.00 0.00 0.00 3.79
32 33 1.741770 ACTTGTCCGCATCGCCTTC 60.742 57.895 0.00 0.00 0.00 3.46
33 34 2.034879 CACTTGTCCGCATCGCCTT 61.035 57.895 0.00 0.00 0.00 4.35
34 35 2.434884 CACTTGTCCGCATCGCCT 60.435 61.111 0.00 0.00 0.00 5.52
35 36 1.573829 TTTCACTTGTCCGCATCGCC 61.574 55.000 0.00 0.00 0.00 5.54
36 37 0.179215 CTTTCACTTGTCCGCATCGC 60.179 55.000 0.00 0.00 0.00 4.58
37 38 0.179215 GCTTTCACTTGTCCGCATCG 60.179 55.000 0.00 0.00 0.00 3.84
38 39 0.179215 CGCTTTCACTTGTCCGCATC 60.179 55.000 0.00 0.00 0.00 3.91
39 40 1.577328 CCGCTTTCACTTGTCCGCAT 61.577 55.000 0.00 0.00 0.00 4.73
40 41 2.250939 CCGCTTTCACTTGTCCGCA 61.251 57.895 0.00 0.00 0.00 5.69
41 42 2.251642 ACCGCTTTCACTTGTCCGC 61.252 57.895 0.00 0.00 0.00 5.54
42 43 1.569493 CACCGCTTTCACTTGTCCG 59.431 57.895 0.00 0.00 0.00 4.79
43 44 1.949257 CCACCGCTTTCACTTGTCC 59.051 57.895 0.00 0.00 0.00 4.02
44 45 1.282875 GCCACCGCTTTCACTTGTC 59.717 57.895 0.00 0.00 0.00 3.18
45 46 1.034838 TTGCCACCGCTTTCACTTGT 61.035 50.000 0.00 0.00 35.36 3.16
46 47 0.318107 CTTGCCACCGCTTTCACTTG 60.318 55.000 0.00 0.00 35.36 3.16
47 48 0.751643 ACTTGCCACCGCTTTCACTT 60.752 50.000 0.00 0.00 35.36 3.16
48 49 1.152963 ACTTGCCACCGCTTTCACT 60.153 52.632 0.00 0.00 35.36 3.41
49 50 1.282875 GACTTGCCACCGCTTTCAC 59.717 57.895 0.00 0.00 35.36 3.18
50 51 2.250939 CGACTTGCCACCGCTTTCA 61.251 57.895 0.00 0.00 35.36 2.69
51 52 2.556287 CGACTTGCCACCGCTTTC 59.444 61.111 0.00 0.00 35.36 2.62
52 53 2.978010 CCGACTTGCCACCGCTTT 60.978 61.111 0.00 0.00 35.36 3.51
56 57 4.760047 CTCCCCGACTTGCCACCG 62.760 72.222 0.00 0.00 0.00 4.94
57 58 4.410400 CCTCCCCGACTTGCCACC 62.410 72.222 0.00 0.00 0.00 4.61
58 59 3.607370 GACCTCCCCGACTTGCCAC 62.607 68.421 0.00 0.00 0.00 5.01
59 60 3.319198 GACCTCCCCGACTTGCCA 61.319 66.667 0.00 0.00 0.00 4.92
60 61 4.097361 GGACCTCCCCGACTTGCC 62.097 72.222 0.00 0.00 0.00 4.52
68 69 2.066999 AAGCTCATCGGACCTCCCC 61.067 63.158 0.00 0.00 0.00 4.81
69 70 1.144936 CAAGCTCATCGGACCTCCC 59.855 63.158 0.00 0.00 0.00 4.30
70 71 1.144936 CCAAGCTCATCGGACCTCC 59.855 63.158 0.00 0.00 0.00 4.30
71 72 1.144936 CCCAAGCTCATCGGACCTC 59.855 63.158 0.00 0.00 0.00 3.85
72 73 0.909610 TTCCCAAGCTCATCGGACCT 60.910 55.000 0.00 0.00 0.00 3.85
73 74 0.462759 CTTCCCAAGCTCATCGGACC 60.463 60.000 0.00 0.00 0.00 4.46
74 75 3.071580 CTTCCCAAGCTCATCGGAC 57.928 57.895 0.00 0.00 0.00 4.79
84 85 3.058160 CCAGCCACGCTTCCCAAG 61.058 66.667 0.00 0.00 36.40 3.61
85 86 4.659172 CCCAGCCACGCTTCCCAA 62.659 66.667 0.00 0.00 36.40 4.12
87 88 4.785453 CTCCCAGCCACGCTTCCC 62.785 72.222 0.00 0.00 36.40 3.97
88 89 3.672295 CTCTCCCAGCCACGCTTCC 62.672 68.421 0.00 0.00 36.40 3.46
89 90 2.125350 CTCTCCCAGCCACGCTTC 60.125 66.667 0.00 0.00 36.40 3.86
90 91 2.604686 TCTCTCCCAGCCACGCTT 60.605 61.111 0.00 0.00 36.40 4.68
91 92 3.386237 GTCTCTCCCAGCCACGCT 61.386 66.667 0.00 0.00 40.77 5.07
92 93 4.803426 CGTCTCTCCCAGCCACGC 62.803 72.222 0.00 0.00 0.00 5.34
93 94 4.135153 CCGTCTCTCCCAGCCACG 62.135 72.222 0.00 0.00 0.00 4.94
94 95 4.459089 GCCGTCTCTCCCAGCCAC 62.459 72.222 0.00 0.00 0.00 5.01
141 142 5.529430 TCGAAAAAGAGCACTATTTGAACCA 59.471 36.000 0.00 0.00 0.00 3.67
157 158 5.969435 GGTTGTGGAACTAACTTCGAAAAAG 59.031 40.000 0.00 0.00 38.04 2.27
161 163 4.139859 TGGTTGTGGAACTAACTTCGAA 57.860 40.909 0.00 0.00 38.04 3.71
195 198 0.690192 TTTGTCATTCGAGGAGCCCA 59.310 50.000 0.00 0.00 0.00 5.36
198 201 1.464997 GGTGTTTGTCATTCGAGGAGC 59.535 52.381 0.00 0.00 0.00 4.70
230 234 0.179181 CGAATGTGTGATGTGCCTGC 60.179 55.000 0.00 0.00 0.00 4.85
243 247 3.181462 TGCCATCTAAGATGCTCGAATGT 60.181 43.478 0.00 0.00 0.00 2.71
307 312 3.303495 GTGATTCGTGTCATGAACGGTAG 59.697 47.826 21.78 3.94 41.34 3.18
311 316 2.065512 TGGTGATTCGTGTCATGAACG 58.934 47.619 18.38 18.38 42.36 3.95
323 328 2.932614 CCAATCTCGAGTGTGGTGATTC 59.067 50.000 21.76 0.00 0.00 2.52
391 396 6.379133 ACTCACTACCGTATAACAGGAATTGA 59.621 38.462 0.00 0.00 0.00 2.57
398 403 3.064408 TCGCACTCACTACCGTATAACAG 59.936 47.826 0.00 0.00 0.00 3.16
415 490 3.366724 TGAATTACGAACATGAGTCGCAC 59.633 43.478 18.92 9.61 0.00 5.34
417 492 3.241995 GGTGAATTACGAACATGAGTCGC 60.242 47.826 18.92 3.52 0.00 5.19
423 498 4.000325 TGTGGAGGTGAATTACGAACATG 59.000 43.478 0.00 0.00 0.00 3.21
424 499 4.253685 CTGTGGAGGTGAATTACGAACAT 58.746 43.478 0.00 0.00 0.00 2.71
426 501 2.415512 GCTGTGGAGGTGAATTACGAAC 59.584 50.000 0.00 0.00 0.00 3.95
429 504 2.093306 TGCTGTGGAGGTGAATTACG 57.907 50.000 0.00 0.00 0.00 3.18
430 505 2.945668 GGATGCTGTGGAGGTGAATTAC 59.054 50.000 0.00 0.00 0.00 1.89
431 506 2.419990 CGGATGCTGTGGAGGTGAATTA 60.420 50.000 0.00 0.00 0.00 1.40
432 507 1.679944 CGGATGCTGTGGAGGTGAATT 60.680 52.381 0.00 0.00 0.00 2.17
433 508 0.107508 CGGATGCTGTGGAGGTGAAT 60.108 55.000 0.00 0.00 0.00 2.57
434 509 1.191489 TCGGATGCTGTGGAGGTGAA 61.191 55.000 0.00 0.00 0.00 3.18
443 610 1.008424 CTATCGCGTCGGATGCTGT 60.008 57.895 19.14 10.30 0.00 4.40
446 613 1.762419 TAAACTATCGCGTCGGATGC 58.238 50.000 12.17 12.17 0.00 3.91
452 619 7.450627 ACTAATGTTGTTTAAACTATCGCGTC 58.549 34.615 18.72 0.22 0.00 5.19
475 642 7.290813 AGGGAGTTTTTATTGAGACTGAAACT 58.709 34.615 0.00 0.00 39.30 2.66
476 643 7.511959 AGGGAGTTTTTATTGAGACTGAAAC 57.488 36.000 0.00 0.00 0.00 2.78
481 648 6.166982 CGAGAAGGGAGTTTTTATTGAGACT 58.833 40.000 0.00 0.00 0.00 3.24
505 672 4.823989 ACATCAGCTGCATTATTAAGGGAC 59.176 41.667 9.47 0.00 0.00 4.46
537 704 0.869730 GCAACTTGCCATTGCCTTTG 59.130 50.000 1.95 0.00 45.48 2.77
544 711 0.960364 ATCCGTCGCAACTTGCCATT 60.960 50.000 8.20 0.00 41.12 3.16
552 719 3.002862 TGCCATTATAAATCCGTCGCAAC 59.997 43.478 0.00 0.00 0.00 4.17
553 720 3.206964 TGCCATTATAAATCCGTCGCAA 58.793 40.909 0.00 0.00 0.00 4.85
559 726 6.642131 CCACAGAATTTGCCATTATAAATCCG 59.358 38.462 0.00 0.00 0.00 4.18
569 736 2.568062 TGAATGCCACAGAATTTGCCAT 59.432 40.909 0.00 0.00 0.00 4.40
581 748 1.816074 TCTACCCGTTTGAATGCCAC 58.184 50.000 0.00 0.00 0.00 5.01
585 752 2.073816 ACGCTTCTACCCGTTTGAATG 58.926 47.619 0.00 0.00 33.26 2.67
592 759 2.372264 TCAGATTACGCTTCTACCCGT 58.628 47.619 0.00 0.00 41.11 5.28
683 850 3.829886 TGAAGAAACATCCACGCATTC 57.170 42.857 0.00 0.00 0.00 2.67
703 870 5.147032 TCAAACTTGACCTTCCCAATCATT 58.853 37.500 0.00 0.00 31.01 2.57
704 871 4.739793 TCAAACTTGACCTTCCCAATCAT 58.260 39.130 0.00 0.00 31.01 2.45
720 887 5.815740 AGTACATCGTTCACAAACTCAAACT 59.184 36.000 0.00 0.00 32.95 2.66
721 888 6.044512 AGTACATCGTTCACAAACTCAAAC 57.955 37.500 0.00 0.00 32.95 2.93
722 889 5.235616 GGAGTACATCGTTCACAAACTCAAA 59.764 40.000 0.00 0.00 34.86 2.69
756 1042 9.759473 AATACCATCATGGCTAGCTTTATTAAT 57.241 29.630 15.72 0.00 42.67 1.40
827 1123 6.484364 AAAAATCTGACTGGAACCAATGTT 57.516 33.333 0.00 0.00 37.42 2.71
828 1124 7.781324 ATAAAAATCTGACTGGAACCAATGT 57.219 32.000 0.00 0.00 0.00 2.71
829 1125 8.306038 TCAATAAAAATCTGACTGGAACCAATG 58.694 33.333 0.00 0.00 0.00 2.82
830 1126 8.421249 TCAATAAAAATCTGACTGGAACCAAT 57.579 30.769 0.00 0.00 0.00 3.16
831 1127 7.039784 CCTCAATAAAAATCTGACTGGAACCAA 60.040 37.037 0.00 0.00 0.00 3.67
832 1128 6.434028 CCTCAATAAAAATCTGACTGGAACCA 59.566 38.462 0.00 0.00 0.00 3.67
833 1129 6.127619 CCCTCAATAAAAATCTGACTGGAACC 60.128 42.308 0.00 0.00 0.00 3.62
834 1130 6.127619 CCCCTCAATAAAAATCTGACTGGAAC 60.128 42.308 0.00 0.00 0.00 3.62
835 1131 5.951747 CCCCTCAATAAAAATCTGACTGGAA 59.048 40.000 0.00 0.00 0.00 3.53
836 1132 5.015178 ACCCCTCAATAAAAATCTGACTGGA 59.985 40.000 0.00 0.00 0.00 3.86
837 1133 5.264395 ACCCCTCAATAAAAATCTGACTGG 58.736 41.667 0.00 0.00 0.00 4.00
838 1134 6.350445 CCAACCCCTCAATAAAAATCTGACTG 60.350 42.308 0.00 0.00 0.00 3.51
839 1135 5.716703 CCAACCCCTCAATAAAAATCTGACT 59.283 40.000 0.00 0.00 0.00 3.41
840 1136 5.480422 ACCAACCCCTCAATAAAAATCTGAC 59.520 40.000 0.00 0.00 0.00 3.51
841 1137 5.650283 ACCAACCCCTCAATAAAAATCTGA 58.350 37.500 0.00 0.00 0.00 3.27
842 1138 6.358974 AACCAACCCCTCAATAAAAATCTG 57.641 37.500 0.00 0.00 0.00 2.90
843 1139 6.295067 CGAAACCAACCCCTCAATAAAAATCT 60.295 38.462 0.00 0.00 0.00 2.40
844 1140 5.867174 CGAAACCAACCCCTCAATAAAAATC 59.133 40.000 0.00 0.00 0.00 2.17
845 1141 5.279758 CCGAAACCAACCCCTCAATAAAAAT 60.280 40.000 0.00 0.00 0.00 1.82
846 1142 4.039366 CCGAAACCAACCCCTCAATAAAAA 59.961 41.667 0.00 0.00 0.00 1.94
847 1143 3.574826 CCGAAACCAACCCCTCAATAAAA 59.425 43.478 0.00 0.00 0.00 1.52
848 1144 3.158676 CCGAAACCAACCCCTCAATAAA 58.841 45.455 0.00 0.00 0.00 1.40
849 1145 2.108601 ACCGAAACCAACCCCTCAATAA 59.891 45.455 0.00 0.00 0.00 1.40
850 1146 1.706305 ACCGAAACCAACCCCTCAATA 59.294 47.619 0.00 0.00 0.00 1.90
851 1147 0.481128 ACCGAAACCAACCCCTCAAT 59.519 50.000 0.00 0.00 0.00 2.57
852 1148 0.179012 GACCGAAACCAACCCCTCAA 60.179 55.000 0.00 0.00 0.00 3.02
853 1149 1.346479 TGACCGAAACCAACCCCTCA 61.346 55.000 0.00 0.00 0.00 3.86
854 1150 0.605589 CTGACCGAAACCAACCCCTC 60.606 60.000 0.00 0.00 0.00 4.30
855 1151 1.057851 TCTGACCGAAACCAACCCCT 61.058 55.000 0.00 0.00 0.00 4.79
856 1152 0.037734 ATCTGACCGAAACCAACCCC 59.962 55.000 0.00 0.00 0.00 4.95
857 1153 1.905637 AATCTGACCGAAACCAACCC 58.094 50.000 0.00 0.00 0.00 4.11
858 1154 4.316205 AAAAATCTGACCGAAACCAACC 57.684 40.909 0.00 0.00 0.00 3.77
888 1184 2.028476 TGACATTACCGACTGAACCCAG 60.028 50.000 0.00 0.00 45.76 4.45
892 1188 2.669364 ACGTGACATTACCGACTGAAC 58.331 47.619 0.00 0.00 0.00 3.18
900 1196 6.774354 TCACTAAGAAAACGTGACATTACC 57.226 37.500 0.00 0.00 33.15 2.85
916 1213 5.607119 AAAAACGTGCCACTATCACTAAG 57.393 39.130 0.00 0.00 32.54 2.18
938 1237 1.444119 GCACCAGACCGACTTGCAAA 61.444 55.000 0.00 0.00 33.87 3.68
983 1283 1.338674 CCATTGTGTGGGCTCTAACGA 60.339 52.381 0.00 0.00 44.79 3.85
1002 1305 0.036388 TCATTTCAGCGACAGGGACC 60.036 55.000 0.00 0.00 0.00 4.46
1006 1309 1.200020 GGGTTTCATTTCAGCGACAGG 59.800 52.381 0.00 0.00 0.00 4.00
1027 1339 1.298563 CGCACACAGGTTGCACTTG 60.299 57.895 0.00 0.00 0.00 3.16
1030 1342 3.964875 CCCGCACACAGGTTGCAC 61.965 66.667 0.00 0.00 0.00 4.57
1032 1344 3.964875 CACCCGCACACAGGTTGC 61.965 66.667 0.00 0.00 32.72 4.17
1434 1798 3.319198 TCGTCTTCTGGTGGGGGC 61.319 66.667 0.00 0.00 0.00 5.80
1438 1907 1.442184 CGTCGTCGTCTTCTGGTGG 60.442 63.158 0.00 0.00 0.00 4.61
1443 1912 0.727970 CATCCTCGTCGTCGTCTTCT 59.272 55.000 1.33 0.00 38.33 2.85
1477 1946 0.305313 GGATCCTCGTCTTCGTCTCG 59.695 60.000 3.84 0.00 38.33 4.04
1478 1947 0.664224 GGGATCCTCGTCTTCGTCTC 59.336 60.000 12.58 0.00 38.33 3.36
1513 2003 3.188786 GTCGCGGCAGTCATGGAC 61.189 66.667 5.47 0.00 0.00 4.02
1642 2150 7.870445 GGTGAGGATGTAGAATTCAGAATAGTC 59.130 40.741 8.44 0.00 0.00 2.59
1644 2152 6.865726 CGGTGAGGATGTAGAATTCAGAATAG 59.134 42.308 8.44 0.00 0.00 1.73
1653 2161 6.049955 TCTTTTTCGGTGAGGATGTAGAAT 57.950 37.500 0.00 0.00 0.00 2.40
1655 2163 5.245301 TCTTCTTTTTCGGTGAGGATGTAGA 59.755 40.000 0.00 0.00 0.00 2.59
1666 2174 5.676331 GCAAGTTGTCTTCTTCTTTTTCGGT 60.676 40.000 4.48 0.00 0.00 4.69
1761 2272 3.278574 CCATGGGAAAATCTGCGACTTA 58.721 45.455 2.85 0.00 0.00 2.24
1766 2278 1.321805 TGCCCATGGGAAAATCTGCG 61.322 55.000 36.00 3.73 37.50 5.18
1833 2345 9.337714 TCAGTCATCCCAATATTCCAATAGATA 57.662 33.333 0.00 0.00 0.00 1.98
1844 2356 2.042162 GGGGCATCAGTCATCCCAATAT 59.958 50.000 0.00 0.00 40.53 1.28
1845 2357 1.425066 GGGGCATCAGTCATCCCAATA 59.575 52.381 0.00 0.00 40.53 1.90
1870 2385 6.980593 AGAATTGCATTGTAGCAGTGTTAAA 58.019 32.000 0.00 0.00 46.54 1.52
1898 2413 0.602638 GTGCGGCGGATTATCCATCA 60.603 55.000 9.78 0.36 35.91 3.07
1920 2435 4.262463 GCCGTCAATATGTCATTCCCTCTA 60.262 45.833 0.00 0.00 0.00 2.43
2009 2525 1.251251 GGATCCAAACAGCAAGCACT 58.749 50.000 6.95 0.00 0.00 4.40
2045 2564 3.842923 ATCCACCTCTCTGCGCCG 61.843 66.667 4.18 0.00 0.00 6.46
2050 2569 1.625315 TGTCCAACATCCACCTCTCTG 59.375 52.381 0.00 0.00 0.00 3.35
2051 2570 1.905215 CTGTCCAACATCCACCTCTCT 59.095 52.381 0.00 0.00 0.00 3.10
2071 2590 0.393537 CTCCTGCAATGGGAGTGACC 60.394 60.000 11.47 0.00 43.77 4.02
2081 2600 3.556633 CGATTCCAGCTATCTCCTGCAAT 60.557 47.826 0.00 0.00 0.00 3.56
2201 2720 1.683385 AGAGTCGAATGATGATGCCGA 59.317 47.619 0.00 0.00 0.00 5.54
2203 2722 3.058450 CAGAGAGTCGAATGATGATGCC 58.942 50.000 0.00 0.00 0.00 4.40
2258 2777 0.598065 GGATGCGACCAAGCTTGTTT 59.402 50.000 24.35 11.44 38.13 2.83
2287 2806 3.514309 ACGGCATATGTAGGGATAGGAAC 59.486 47.826 4.29 0.00 0.00 3.62
2426 2948 2.159198 CCATGGCAAGGCAATAGTTCAC 60.159 50.000 0.00 0.00 0.00 3.18
2433 2959 4.573021 AAAAATACCATGGCAAGGCAAT 57.427 36.364 13.04 0.00 0.00 3.56
2453 2979 7.615365 AGGCAATAGTTCATGTCCATCTAAAAA 59.385 33.333 0.00 0.00 0.00 1.94
2454 2980 7.118723 AGGCAATAGTTCATGTCCATCTAAAA 58.881 34.615 0.00 0.00 0.00 1.52
2455 2981 6.662755 AGGCAATAGTTCATGTCCATCTAAA 58.337 36.000 0.00 0.00 0.00 1.85
2456 2982 6.252599 AGGCAATAGTTCATGTCCATCTAA 57.747 37.500 0.00 0.00 0.00 2.10
2457 2983 5.894298 AGGCAATAGTTCATGTCCATCTA 57.106 39.130 0.00 0.00 0.00 1.98
2458 2984 4.785346 AGGCAATAGTTCATGTCCATCT 57.215 40.909 0.00 0.00 0.00 2.90
2459 2985 4.498682 GCAAGGCAATAGTTCATGTCCATC 60.499 45.833 0.00 0.00 0.00 3.51
2460 2986 3.382546 GCAAGGCAATAGTTCATGTCCAT 59.617 43.478 0.00 0.00 0.00 3.41
2461 2987 2.754552 GCAAGGCAATAGTTCATGTCCA 59.245 45.455 0.00 0.00 0.00 4.02
2462 2988 2.099756 GGCAAGGCAATAGTTCATGTCC 59.900 50.000 0.00 0.00 0.00 4.02
2463 2989 2.754552 TGGCAAGGCAATAGTTCATGTC 59.245 45.455 0.00 0.00 0.00 3.06
2464 2990 2.806434 TGGCAAGGCAATAGTTCATGT 58.194 42.857 0.00 0.00 0.00 3.21
2465 2991 3.491964 CCATGGCAAGGCAATAGTTCATG 60.492 47.826 0.00 0.00 0.00 3.07
2466 2992 2.696707 CCATGGCAAGGCAATAGTTCAT 59.303 45.455 0.00 0.00 0.00 2.57
2467 2993 2.101783 CCATGGCAAGGCAATAGTTCA 58.898 47.619 0.00 0.00 0.00 3.18
2468 2994 2.102578 ACCATGGCAAGGCAATAGTTC 58.897 47.619 13.04 0.00 0.00 3.01
2469 2995 2.236489 ACCATGGCAAGGCAATAGTT 57.764 45.000 13.04 0.00 0.00 2.24
2470 2996 3.380471 TTACCATGGCAAGGCAATAGT 57.620 42.857 13.04 1.47 0.00 2.12
2471 2997 4.942761 AATTACCATGGCAAGGCAATAG 57.057 40.909 13.04 0.00 0.00 1.73
2472 2998 5.690464 AAAATTACCATGGCAAGGCAATA 57.310 34.783 13.04 0.00 0.00 1.90
2473 2999 4.573021 AAAATTACCATGGCAAGGCAAT 57.427 36.364 13.04 4.91 0.00 3.56
2474 3000 4.363991 AAAAATTACCATGGCAAGGCAA 57.636 36.364 13.04 2.20 0.00 4.52
2526 3052 5.720371 TGTTGGTTTCATTCTGGTAATGG 57.280 39.130 0.00 0.00 0.00 3.16
2584 3110 1.153349 CCTAGTTTCCTGGCTCCGC 60.153 63.158 0.00 0.00 0.00 5.54
2586 3112 2.103941 CTGATCCTAGTTTCCTGGCTCC 59.896 54.545 0.00 0.00 0.00 4.70
2587 3113 2.103941 CCTGATCCTAGTTTCCTGGCTC 59.896 54.545 0.00 0.00 0.00 4.70
2588 3114 2.122768 CCTGATCCTAGTTTCCTGGCT 58.877 52.381 0.00 0.00 0.00 4.75
2589 3115 2.119495 TCCTGATCCTAGTTTCCTGGC 58.881 52.381 0.00 0.00 0.00 4.85
2590 3116 2.101582 CGTCCTGATCCTAGTTTCCTGG 59.898 54.545 0.00 0.00 0.00 4.45
2591 3117 2.101582 CCGTCCTGATCCTAGTTTCCTG 59.898 54.545 0.00 0.00 0.00 3.86
2592 3118 2.389715 CCGTCCTGATCCTAGTTTCCT 58.610 52.381 0.00 0.00 0.00 3.36
2593 3119 1.202545 GCCGTCCTGATCCTAGTTTCC 60.203 57.143 0.00 0.00 0.00 3.13
2594 3120 1.757699 AGCCGTCCTGATCCTAGTTTC 59.242 52.381 0.00 0.00 0.00 2.78
2595 3121 1.482593 CAGCCGTCCTGATCCTAGTTT 59.517 52.381 0.00 0.00 44.64 2.66
2596 3122 1.115467 CAGCCGTCCTGATCCTAGTT 58.885 55.000 0.00 0.00 44.64 2.24
2597 3123 0.757188 CCAGCCGTCCTGATCCTAGT 60.757 60.000 2.22 0.00 44.64 2.57
2598 3124 0.468214 TCCAGCCGTCCTGATCCTAG 60.468 60.000 2.22 0.00 44.64 3.02
2600 3126 1.074926 ATCCAGCCGTCCTGATCCT 60.075 57.895 2.22 0.00 44.64 3.24
2602 3128 1.596477 GCATCCAGCCGTCCTGATC 60.596 63.158 2.22 0.00 44.64 2.92
2603 3129 2.507944 GCATCCAGCCGTCCTGAT 59.492 61.111 2.22 0.00 44.64 2.90
2613 3139 7.556275 TCCCTAATTAGTTTTAACAGCATCCAG 59.444 37.037 11.50 0.00 0.00 3.86
2614 3140 7.406916 TCCCTAATTAGTTTTAACAGCATCCA 58.593 34.615 11.50 0.00 0.00 3.41
2616 3142 7.773690 TCCTCCCTAATTAGTTTTAACAGCATC 59.226 37.037 11.50 0.00 0.00 3.91
2618 3144 6.882678 GTCCTCCCTAATTAGTTTTAACAGCA 59.117 38.462 11.50 0.00 0.00 4.41
2619 3145 6.318144 GGTCCTCCCTAATTAGTTTTAACAGC 59.682 42.308 11.50 0.00 0.00 4.40
2620 3146 7.399634 TGGTCCTCCCTAATTAGTTTTAACAG 58.600 38.462 11.50 0.00 0.00 3.16
2622 3148 7.400439 ACTGGTCCTCCCTAATTAGTTTTAAC 58.600 38.462 11.50 4.35 0.00 2.01
2623 3149 7.460082 AGACTGGTCCTCCCTAATTAGTTTTAA 59.540 37.037 11.50 0.00 0.00 1.52
2624 3150 6.964086 AGACTGGTCCTCCCTAATTAGTTTTA 59.036 38.462 11.50 0.00 0.00 1.52
2626 3152 5.351405 AGACTGGTCCTCCCTAATTAGTTT 58.649 41.667 11.50 0.00 0.00 2.66
2628 3154 4.628661 AGACTGGTCCTCCCTAATTAGT 57.371 45.455 11.50 0.00 0.00 2.24
2629 3155 5.455872 TGTAGACTGGTCCTCCCTAATTAG 58.544 45.833 5.43 5.43 0.00 1.73
2630 3156 5.476950 TGTAGACTGGTCCTCCCTAATTA 57.523 43.478 0.00 0.00 0.00 1.40
2631 3157 4.348020 TGTAGACTGGTCCTCCCTAATT 57.652 45.455 0.00 0.00 0.00 1.40
2634 3160 3.839323 TTTGTAGACTGGTCCTCCCTA 57.161 47.619 0.00 0.00 0.00 3.53
2635 3161 2.715763 TTTGTAGACTGGTCCTCCCT 57.284 50.000 0.00 0.00 0.00 4.20
2636 3162 3.782656 TTTTTGTAGACTGGTCCTCCC 57.217 47.619 0.00 0.00 0.00 4.30
2891 5625 0.607112 TGCTGAACTGCTCCTCTCAG 59.393 55.000 5.42 0.00 38.66 3.35
2892 5626 1.051008 TTGCTGAACTGCTCCTCTCA 58.949 50.000 5.42 0.00 0.00 3.27
2893 5627 2.175878 TTTGCTGAACTGCTCCTCTC 57.824 50.000 5.42 0.00 0.00 3.20
2894 5628 2.039480 TCATTTGCTGAACTGCTCCTCT 59.961 45.455 5.42 0.00 0.00 3.69
2895 5629 2.430465 TCATTTGCTGAACTGCTCCTC 58.570 47.619 5.42 0.00 0.00 3.71
2896 5630 2.574006 TCATTTGCTGAACTGCTCCT 57.426 45.000 5.42 0.00 0.00 3.69
2897 5631 3.648339 TTTCATTTGCTGAACTGCTCC 57.352 42.857 5.42 0.00 43.54 4.70
2898 5632 4.857588 CAGATTTCATTTGCTGAACTGCTC 59.142 41.667 5.42 0.00 43.54 4.26
2899 5633 4.321750 CCAGATTTCATTTGCTGAACTGCT 60.322 41.667 0.00 0.00 43.54 4.24
2900 5634 3.924686 CCAGATTTCATTTGCTGAACTGC 59.075 43.478 0.00 0.00 43.54 4.40
2901 5635 5.381174 TCCAGATTTCATTTGCTGAACTG 57.619 39.130 0.00 0.00 43.54 3.16
2902 5636 5.771666 TCTTCCAGATTTCATTTGCTGAACT 59.228 36.000 0.00 0.00 43.54 3.01
2903 5637 6.017400 TCTTCCAGATTTCATTTGCTGAAC 57.983 37.500 0.00 0.00 43.54 3.18
2904 5638 6.653526 TTCTTCCAGATTTCATTTGCTGAA 57.346 33.333 0.00 0.00 42.15 3.02
2905 5639 6.653526 TTTCTTCCAGATTTCATTTGCTGA 57.346 33.333 0.00 0.00 0.00 4.26
2906 5640 6.702723 TGTTTTCTTCCAGATTTCATTTGCTG 59.297 34.615 0.00 0.00 0.00 4.41
2907 5641 6.819284 TGTTTTCTTCCAGATTTCATTTGCT 58.181 32.000 0.00 0.00 0.00 3.91
2908 5642 7.481275 TTGTTTTCTTCCAGATTTCATTTGC 57.519 32.000 0.00 0.00 0.00 3.68
2910 5644 9.410556 CGTATTGTTTTCTTCCAGATTTCATTT 57.589 29.630 0.00 0.00 0.00 2.32
2911 5645 8.028938 CCGTATTGTTTTCTTCCAGATTTCATT 58.971 33.333 0.00 0.00 0.00 2.57
2912 5646 7.176690 ACCGTATTGTTTTCTTCCAGATTTCAT 59.823 33.333 0.00 0.00 0.00 2.57
2913 5647 6.488683 ACCGTATTGTTTTCTTCCAGATTTCA 59.511 34.615 0.00 0.00 0.00 2.69
2914 5648 6.909909 ACCGTATTGTTTTCTTCCAGATTTC 58.090 36.000 0.00 0.00 0.00 2.17
2915 5649 6.894339 ACCGTATTGTTTTCTTCCAGATTT 57.106 33.333 0.00 0.00 0.00 2.17
2916 5650 6.715264 AGAACCGTATTGTTTTCTTCCAGATT 59.285 34.615 0.00 0.00 0.00 2.40
2917 5651 6.238648 AGAACCGTATTGTTTTCTTCCAGAT 58.761 36.000 0.00 0.00 0.00 2.90
2918 5652 5.617252 AGAACCGTATTGTTTTCTTCCAGA 58.383 37.500 0.00 0.00 0.00 3.86
2919 5653 5.941948 AGAACCGTATTGTTTTCTTCCAG 57.058 39.130 0.00 0.00 0.00 3.86
2920 5654 6.289834 TGTAGAACCGTATTGTTTTCTTCCA 58.710 36.000 0.00 0.00 30.89 3.53
2921 5655 6.790285 TGTAGAACCGTATTGTTTTCTTCC 57.210 37.500 0.00 0.00 30.89 3.46
2922 5656 9.968743 CTATTGTAGAACCGTATTGTTTTCTTC 57.031 33.333 0.00 0.00 30.89 2.87
2923 5657 9.498176 ACTATTGTAGAACCGTATTGTTTTCTT 57.502 29.630 0.00 0.00 30.89 2.52
2924 5658 9.498176 AACTATTGTAGAACCGTATTGTTTTCT 57.502 29.630 0.00 0.00 32.99 2.52
2926 5660 9.887406 CAAACTATTGTAGAACCGTATTGTTTT 57.113 29.630 0.00 0.00 0.00 2.43
2927 5661 8.508875 CCAAACTATTGTAGAACCGTATTGTTT 58.491 33.333 0.00 0.00 34.60 2.83
2928 5662 7.361457 GCCAAACTATTGTAGAACCGTATTGTT 60.361 37.037 0.00 0.00 34.60 2.83
2929 5663 6.093082 GCCAAACTATTGTAGAACCGTATTGT 59.907 38.462 0.00 0.00 34.60 2.71
2930 5664 6.092944 TGCCAAACTATTGTAGAACCGTATTG 59.907 38.462 0.00 0.00 34.60 1.90
2931 5665 6.174760 TGCCAAACTATTGTAGAACCGTATT 58.825 36.000 0.00 0.00 34.60 1.89
2932 5666 5.736813 TGCCAAACTATTGTAGAACCGTAT 58.263 37.500 0.00 0.00 34.60 3.06
2933 5667 5.149973 TGCCAAACTATTGTAGAACCGTA 57.850 39.130 0.00 0.00 34.60 4.02
2934 5668 4.010667 TGCCAAACTATTGTAGAACCGT 57.989 40.909 0.00 0.00 34.60 4.83
2935 5669 4.730613 GCATGCCAAACTATTGTAGAACCG 60.731 45.833 6.36 0.00 34.60 4.44
2936 5670 4.157656 TGCATGCCAAACTATTGTAGAACC 59.842 41.667 16.68 0.00 34.60 3.62
2937 5671 5.309323 TGCATGCCAAACTATTGTAGAAC 57.691 39.130 16.68 0.00 34.60 3.01
2938 5672 5.893687 CATGCATGCCAAACTATTGTAGAA 58.106 37.500 14.93 0.00 34.60 2.10
2939 5673 5.503662 CATGCATGCCAAACTATTGTAGA 57.496 39.130 14.93 0.00 34.60 2.59
2954 5688 1.140161 CCACTTTCCGGCATGCATG 59.860 57.895 22.70 22.70 0.00 4.06
2955 5689 2.053865 CCCACTTTCCGGCATGCAT 61.054 57.895 21.36 0.00 0.00 3.96
2956 5690 2.676121 CCCACTTTCCGGCATGCA 60.676 61.111 21.36 0.00 0.00 3.96
2957 5691 3.451894 CCCCACTTTCCGGCATGC 61.452 66.667 9.90 9.90 0.00 4.06
2958 5692 3.451894 GCCCCACTTTCCGGCATG 61.452 66.667 0.00 0.00 42.52 4.06
2961 5695 3.680786 GTTGCCCCACTTTCCGGC 61.681 66.667 0.00 0.00 43.32 6.13
2962 5696 2.203422 TGTTGCCCCACTTTCCGG 60.203 61.111 0.00 0.00 0.00 5.14
2963 5697 1.515521 GAGTGTTGCCCCACTTTCCG 61.516 60.000 6.79 0.00 45.46 4.30
2964 5698 0.178990 AGAGTGTTGCCCCACTTTCC 60.179 55.000 6.79 0.00 45.46 3.13
2965 5699 2.561478 TAGAGTGTTGCCCCACTTTC 57.439 50.000 6.79 0.00 45.46 2.62
2966 5700 3.622455 GCTATAGAGTGTTGCCCCACTTT 60.622 47.826 3.21 4.39 45.46 2.66
2967 5701 2.092914 GCTATAGAGTGTTGCCCCACTT 60.093 50.000 3.21 1.44 45.46 3.16
2969 5703 1.475213 GGCTATAGAGTGTTGCCCCAC 60.475 57.143 3.21 0.00 37.81 4.61
2970 5704 0.837272 GGCTATAGAGTGTTGCCCCA 59.163 55.000 3.21 0.00 37.81 4.96
2971 5705 0.249911 CGGCTATAGAGTGTTGCCCC 60.250 60.000 3.21 0.00 40.40 5.80
2972 5706 0.880718 GCGGCTATAGAGTGTTGCCC 60.881 60.000 3.21 0.00 40.40 5.36
2973 5707 0.179084 TGCGGCTATAGAGTGTTGCC 60.179 55.000 3.21 0.00 40.14 4.52
2974 5708 1.795286 GATGCGGCTATAGAGTGTTGC 59.205 52.381 3.21 0.00 0.00 4.17
2975 5709 2.797156 GTGATGCGGCTATAGAGTGTTG 59.203 50.000 3.21 0.00 0.00 3.33
2976 5710 2.430694 TGTGATGCGGCTATAGAGTGTT 59.569 45.455 3.21 0.00 0.00 3.32
2977 5711 2.031870 TGTGATGCGGCTATAGAGTGT 58.968 47.619 3.21 0.00 0.00 3.55
2978 5712 2.800881 TGTGATGCGGCTATAGAGTG 57.199 50.000 3.21 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.