Multiple sequence alignment - TraesCS3B01G041100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G041100 chr3B 100.000 2390 0 0 824 3213 20384037 20381648 0.000000e+00 4414.0
1 TraesCS3B01G041100 chr3B 95.632 870 27 2 865 1723 16324341 16325210 0.000000e+00 1386.0
2 TraesCS3B01G041100 chr3B 91.970 797 45 5 1712 2503 16326537 16327319 0.000000e+00 1099.0
3 TraesCS3B01G041100 chr3B 100.000 499 0 0 1 499 20384860 20384362 0.000000e+00 922.0
4 TraesCS3B01G041100 chr3B 86.767 733 56 22 2495 3213 16328583 16329288 0.000000e+00 778.0
5 TraesCS3B01G041100 chr3B 92.373 472 30 4 21 490 16334473 16334940 0.000000e+00 667.0
6 TraesCS3B01G041100 chr3B 84.314 357 50 4 1308 1658 16333633 16333989 8.530000e-91 344.0
7 TraesCS3B01G041100 chr3B 79.787 376 57 16 1886 2246 16334344 16334715 4.110000e-64 255.0
8 TraesCS3B01G041100 chr3D 89.075 1968 153 18 1273 3213 11592715 11594647 0.000000e+00 2386.0
9 TraesCS3B01G041100 chr3D 92.357 471 33 2 21 490 11601784 11602252 0.000000e+00 667.0
10 TraesCS3B01G041100 chr3D 85.434 357 46 4 1308 1658 11600938 11601294 1.820000e-97 366.0
11 TraesCS3B01G041100 chr3D 89.655 58 4 1 3157 3212 78517334 78517391 4.450000e-09 73.1
12 TraesCS3B01G041100 chr3A 90.645 1550 113 15 1250 2783 25389008 25387475 0.000000e+00 2030.0
13 TraesCS3B01G041100 chr3A 92.823 418 25 4 2369 2783 25385696 25385281 4.590000e-168 601.0
14 TraesCS3B01G041100 chr3A 90.594 202 17 2 2733 2934 25385299 25385100 1.900000e-67 267.0
15 TraesCS3B01G041100 chr7D 76.243 362 66 15 1890 2246 70821098 70821444 1.180000e-39 174.0
16 TraesCS3B01G041100 chr7D 90.152 132 13 0 1527 1658 70820861 70820992 4.260000e-39 172.0
17 TraesCS3B01G041100 chr7D 90.385 52 4 1 3162 3212 30985513 30985564 2.070000e-07 67.6
18 TraesCS3B01G041100 chr7D 89.091 55 4 1 3160 3212 450271443 450271497 2.070000e-07 67.6
19 TraesCS3B01G041100 chr7B 90.226 133 13 0 1526 1658 12966913 12967045 1.180000e-39 174.0
20 TraesCS3B01G041100 chr7B 87.162 148 19 0 2099 2246 12967338 12967485 5.510000e-38 169.0
21 TraesCS3B01G041100 chr7A 90.226 133 13 0 1526 1658 76936022 76936154 1.180000e-39 174.0
22 TraesCS3B01G041100 chr7A 87.838 148 18 0 2099 2246 76936449 76936596 1.180000e-39 174.0
23 TraesCS3B01G041100 chr2A 98.077 52 1 0 90 141 741990046 741989995 1.230000e-14 91.6
24 TraesCS3B01G041100 chr2D 95.918 49 2 0 3164 3212 8493574 8493526 2.660000e-11 80.5
25 TraesCS3B01G041100 chr2D 90.385 52 3 2 3163 3212 451694139 451694088 2.070000e-07 67.6
26 TraesCS3B01G041100 chrUn 90.909 55 2 3 3161 3212 45549393 45549447 1.600000e-08 71.3
27 TraesCS3B01G041100 chr6A 90.385 52 4 1 3162 3212 135759903 135759852 2.070000e-07 67.6
28 TraesCS3B01G041100 chr1B 89.091 55 5 1 3158 3211 681806964 681806910 2.070000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G041100 chr3B 20381648 20384860 3212 True 2668.000000 4414 100.000000 1 3213 2 chr3B.!!$R1 3212
1 TraesCS3B01G041100 chr3B 16324341 16329288 4947 False 1087.666667 1386 91.456333 865 3213 3 chr3B.!!$F1 2348
2 TraesCS3B01G041100 chr3B 16333633 16334940 1307 False 422.000000 667 85.491333 21 2246 3 chr3B.!!$F2 2225
3 TraesCS3B01G041100 chr3D 11592715 11594647 1932 False 2386.000000 2386 89.075000 1273 3213 1 chr3D.!!$F1 1940
4 TraesCS3B01G041100 chr3D 11600938 11602252 1314 False 516.500000 667 88.895500 21 1658 2 chr3D.!!$F3 1637
5 TraesCS3B01G041100 chr3A 25385100 25389008 3908 True 966.000000 2030 91.354000 1250 2934 3 chr3A.!!$R1 1684

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
176 177 0.105039 CTCGGCAAGGACTACCATCC 59.895 60.0 0.00 0.0 39.28 3.51 F
486 487 0.108186 TGTTGTGCCGGCATCTAGAG 60.108 55.0 35.23 0.0 0.00 2.43 F
1726 3088 0.174389 CTCTAAGGCTCTGCTCGCAA 59.826 55.0 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1189 1201 0.028902 GTTTCGTGGCTGGTGTTGTC 59.971 55.0 0.0 0.0 0.0 3.18 R
1987 3369 0.384309 GCACATACCTCACGATCCGA 59.616 55.0 0.0 0.0 0.0 4.55 R
2895 5616 1.097547 CAGCCAATCTAAGCCCGTGG 61.098 60.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.807649 AAATTACTCATATTTCCAACATTGCTC 57.192 29.630 0.00 0.00 0.00 4.26
27 28 7.936496 TTACTCATATTTCCAACATTGCTCA 57.064 32.000 0.00 0.00 0.00 4.26
28 29 6.839124 ACTCATATTTCCAACATTGCTCAA 57.161 33.333 0.00 0.00 0.00 3.02
29 30 6.624423 ACTCATATTTCCAACATTGCTCAAC 58.376 36.000 0.00 0.00 0.00 3.18
30 31 6.209192 ACTCATATTTCCAACATTGCTCAACA 59.791 34.615 0.00 0.00 0.00 3.33
31 32 7.093640 ACTCATATTTCCAACATTGCTCAACAT 60.094 33.333 0.00 0.00 0.00 2.71
32 33 7.036829 TCATATTTCCAACATTGCTCAACATG 58.963 34.615 0.00 0.00 0.00 3.21
33 34 4.933505 TTTCCAACATTGCTCAACATGA 57.066 36.364 0.00 0.00 0.00 3.07
34 35 4.933505 TTCCAACATTGCTCAACATGAA 57.066 36.364 0.00 0.00 0.00 2.57
35 36 4.241590 TCCAACATTGCTCAACATGAAC 57.758 40.909 0.00 0.00 0.00 3.18
36 37 2.981805 CCAACATTGCTCAACATGAACG 59.018 45.455 0.00 0.00 0.00 3.95
37 38 2.336554 ACATTGCTCAACATGAACGC 57.663 45.000 0.00 0.00 0.00 4.84
38 39 1.253116 CATTGCTCAACATGAACGCG 58.747 50.000 3.53 3.53 0.00 6.01
39 40 0.454957 ATTGCTCAACATGAACGCGC 60.455 50.000 5.73 0.00 0.00 6.86
40 41 2.202349 GCTCAACATGAACGCGCC 60.202 61.111 5.73 0.00 0.00 6.53
41 42 2.096406 CTCAACATGAACGCGCCG 59.904 61.111 5.73 0.00 0.00 6.46
42 43 2.356433 TCAACATGAACGCGCCGA 60.356 55.556 5.73 0.00 0.00 5.54
43 44 2.096406 CAACATGAACGCGCCGAG 59.904 61.111 5.73 0.00 0.00 4.63
44 45 2.357034 AACATGAACGCGCCGAGT 60.357 55.556 5.73 0.00 0.00 4.18
45 46 2.380410 AACATGAACGCGCCGAGTC 61.380 57.895 5.73 0.00 0.00 3.36
46 47 3.554692 CATGAACGCGCCGAGTCC 61.555 66.667 5.73 0.00 0.00 3.85
47 48 3.760035 ATGAACGCGCCGAGTCCT 61.760 61.111 5.73 0.00 0.00 3.85
48 49 3.296709 ATGAACGCGCCGAGTCCTT 62.297 57.895 5.73 0.00 0.00 3.36
49 50 2.737376 GAACGCGCCGAGTCCTTT 60.737 61.111 5.73 0.00 0.00 3.11
50 51 1.444895 GAACGCGCCGAGTCCTTTA 60.445 57.895 5.73 0.00 0.00 1.85
51 52 0.804933 GAACGCGCCGAGTCCTTTAT 60.805 55.000 5.73 0.00 0.00 1.40
52 53 0.457035 AACGCGCCGAGTCCTTTATA 59.543 50.000 5.73 0.00 0.00 0.98
53 54 0.672342 ACGCGCCGAGTCCTTTATAT 59.328 50.000 5.73 0.00 0.00 0.86
54 55 1.068127 ACGCGCCGAGTCCTTTATATT 59.932 47.619 5.73 0.00 0.00 1.28
55 56 1.455786 CGCGCCGAGTCCTTTATATTG 59.544 52.381 0.00 0.00 0.00 1.90
56 57 2.750948 GCGCCGAGTCCTTTATATTGA 58.249 47.619 0.00 0.00 0.00 2.57
57 58 3.326747 GCGCCGAGTCCTTTATATTGAT 58.673 45.455 0.00 0.00 0.00 2.57
58 59 4.491676 GCGCCGAGTCCTTTATATTGATA 58.508 43.478 0.00 0.00 0.00 2.15
59 60 4.927425 GCGCCGAGTCCTTTATATTGATAA 59.073 41.667 0.00 0.00 0.00 1.75
60 61 5.407387 GCGCCGAGTCCTTTATATTGATAAA 59.593 40.000 0.00 0.00 36.35 1.40
61 62 6.092259 GCGCCGAGTCCTTTATATTGATAAAT 59.908 38.462 0.00 0.00 37.00 1.40
62 63 7.674240 GCGCCGAGTCCTTTATATTGATAAATC 60.674 40.741 0.00 0.00 37.00 2.17
63 64 7.545965 CGCCGAGTCCTTTATATTGATAAATCT 59.454 37.037 0.00 0.00 37.00 2.40
64 65 8.874816 GCCGAGTCCTTTATATTGATAAATCTC 58.125 37.037 0.00 0.00 37.00 2.75
65 66 9.929180 CCGAGTCCTTTATATTGATAAATCTCA 57.071 33.333 0.00 0.00 37.00 3.27
79 80 9.844790 TTGATAAATCTCAAACAAGCACTATTG 57.155 29.630 0.00 0.00 32.35 1.90
80 81 9.230122 TGATAAATCTCAAACAAGCACTATTGA 57.770 29.630 0.00 0.00 34.20 2.57
83 84 7.692460 AATCTCAAACAAGCACTATTGATCA 57.308 32.000 0.00 0.00 34.20 2.92
84 85 7.692460 ATCTCAAACAAGCACTATTGATCAA 57.308 32.000 11.26 11.26 34.20 2.57
85 86 7.692460 TCTCAAACAAGCACTATTGATCAAT 57.308 32.000 23.75 23.75 34.20 2.57
86 87 7.755591 TCTCAAACAAGCACTATTGATCAATC 58.244 34.615 23.95 10.18 34.20 2.67
87 88 6.855836 TCAAACAAGCACTATTGATCAATCC 58.144 36.000 23.95 11.25 34.20 3.01
88 89 5.841957 AACAAGCACTATTGATCAATCCC 57.158 39.130 23.95 10.93 34.20 3.85
89 90 4.858850 ACAAGCACTATTGATCAATCCCA 58.141 39.130 23.95 6.71 34.20 4.37
90 91 4.641989 ACAAGCACTATTGATCAATCCCAC 59.358 41.667 23.95 12.63 34.20 4.61
91 92 4.508551 AGCACTATTGATCAATCCCACA 57.491 40.909 23.95 5.97 32.50 4.17
92 93 4.202441 AGCACTATTGATCAATCCCACAC 58.798 43.478 23.95 10.35 32.50 3.82
93 94 3.002656 GCACTATTGATCAATCCCACACG 59.997 47.826 23.95 8.47 32.50 4.49
94 95 3.002656 CACTATTGATCAATCCCACACGC 59.997 47.826 23.95 0.00 32.50 5.34
95 96 2.127271 ATTGATCAATCCCACACGCA 57.873 45.000 15.36 0.00 0.00 5.24
96 97 1.164411 TTGATCAATCCCACACGCAC 58.836 50.000 3.38 0.00 0.00 5.34
97 98 1.018752 TGATCAATCCCACACGCACG 61.019 55.000 0.00 0.00 0.00 5.34
98 99 2.309764 GATCAATCCCACACGCACGC 62.310 60.000 0.00 0.00 0.00 5.34
99 100 2.803155 ATCAATCCCACACGCACGCT 62.803 55.000 0.00 0.00 0.00 5.07
100 101 2.742372 AATCCCACACGCACGCTC 60.742 61.111 0.00 0.00 0.00 5.03
111 112 2.807045 CACGCTCGTGCTGGTCTC 60.807 66.667 9.55 0.00 39.39 3.36
112 113 4.057428 ACGCTCGTGCTGGTCTCC 62.057 66.667 7.97 0.00 36.97 3.71
113 114 3.753434 CGCTCGTGCTGGTCTCCT 61.753 66.667 7.97 0.00 36.97 3.69
114 115 2.183046 GCTCGTGCTGGTCTCCTC 59.817 66.667 1.41 0.00 36.03 3.71
115 116 2.347322 GCTCGTGCTGGTCTCCTCT 61.347 63.158 1.41 0.00 36.03 3.69
116 117 1.032657 GCTCGTGCTGGTCTCCTCTA 61.033 60.000 1.41 0.00 36.03 2.43
117 118 1.464734 CTCGTGCTGGTCTCCTCTAA 58.535 55.000 0.00 0.00 0.00 2.10
118 119 2.028130 CTCGTGCTGGTCTCCTCTAAT 58.972 52.381 0.00 0.00 0.00 1.73
119 120 1.751351 TCGTGCTGGTCTCCTCTAATG 59.249 52.381 0.00 0.00 0.00 1.90
120 121 1.202463 CGTGCTGGTCTCCTCTAATGG 60.202 57.143 0.00 0.00 0.00 3.16
121 122 0.833287 TGCTGGTCTCCTCTAATGGC 59.167 55.000 0.00 0.00 0.00 4.40
122 123 0.833287 GCTGGTCTCCTCTAATGGCA 59.167 55.000 0.00 0.00 0.00 4.92
123 124 1.202627 GCTGGTCTCCTCTAATGGCAG 60.203 57.143 0.00 0.00 0.00 4.85
124 125 0.833287 TGGTCTCCTCTAATGGCAGC 59.167 55.000 0.00 0.00 0.00 5.25
125 126 0.107643 GGTCTCCTCTAATGGCAGCC 59.892 60.000 3.66 3.66 0.00 4.85
126 127 1.127343 GTCTCCTCTAATGGCAGCCT 58.873 55.000 14.15 0.00 0.00 4.58
127 128 1.126488 TCTCCTCTAATGGCAGCCTG 58.874 55.000 14.15 0.38 0.00 4.85
128 129 0.835941 CTCCTCTAATGGCAGCCTGT 59.164 55.000 14.15 2.51 0.00 4.00
129 130 2.042464 CTCCTCTAATGGCAGCCTGTA 58.958 52.381 14.15 3.69 0.00 2.74
130 131 2.636893 CTCCTCTAATGGCAGCCTGTAT 59.363 50.000 14.15 0.00 0.00 2.29
131 132 3.048600 TCCTCTAATGGCAGCCTGTATT 58.951 45.455 14.15 6.86 0.00 1.89
132 133 3.144506 CCTCTAATGGCAGCCTGTATTG 58.855 50.000 14.15 0.00 0.00 1.90
133 134 3.144506 CTCTAATGGCAGCCTGTATTGG 58.855 50.000 14.15 6.50 0.00 3.16
134 135 2.777114 TCTAATGGCAGCCTGTATTGGA 59.223 45.455 14.15 8.88 0.00 3.53
135 136 2.530460 AATGGCAGCCTGTATTGGAA 57.470 45.000 14.15 0.00 0.00 3.53
136 137 2.062971 ATGGCAGCCTGTATTGGAAG 57.937 50.000 14.15 0.00 0.00 3.46
137 138 0.680921 TGGCAGCCTGTATTGGAAGC 60.681 55.000 14.15 0.00 0.00 3.86
138 139 1.718757 GGCAGCCTGTATTGGAAGCG 61.719 60.000 3.29 0.00 31.93 4.68
139 140 0.744414 GCAGCCTGTATTGGAAGCGA 60.744 55.000 0.00 0.00 0.00 4.93
140 141 1.009829 CAGCCTGTATTGGAAGCGAC 58.990 55.000 0.00 0.00 0.00 5.19
141 142 0.613260 AGCCTGTATTGGAAGCGACA 59.387 50.000 0.00 0.00 0.00 4.35
142 143 1.009829 GCCTGTATTGGAAGCGACAG 58.990 55.000 0.00 0.00 39.22 3.51
143 144 1.009829 CCTGTATTGGAAGCGACAGC 58.990 55.000 0.00 0.00 45.58 4.40
155 156 2.502080 GACAGCGACCGTCGTCTG 60.502 66.667 28.31 28.31 43.94 3.51
156 157 4.702081 ACAGCGACCGTCGTCTGC 62.702 66.667 29.15 13.95 42.97 4.26
160 161 4.813526 CGACCGTCGTCTGCCTCG 62.814 72.222 12.91 0.00 36.82 4.63
161 162 4.477975 GACCGTCGTCTGCCTCGG 62.478 72.222 0.00 0.00 46.98 4.63
175 176 3.669354 CTCGGCAAGGACTACCATC 57.331 57.895 0.00 0.00 38.94 3.51
176 177 0.105039 CTCGGCAAGGACTACCATCC 59.895 60.000 0.00 0.00 39.28 3.51
177 178 1.227263 CGGCAAGGACTACCATCCG 60.227 63.158 0.00 0.00 44.22 4.18
178 179 1.672854 CGGCAAGGACTACCATCCGA 61.673 60.000 0.00 0.00 44.22 4.55
179 180 0.179081 GGCAAGGACTACCATCCGAC 60.179 60.000 0.00 0.00 44.22 4.79
180 181 0.179081 GCAAGGACTACCATCCGACC 60.179 60.000 0.00 0.00 44.22 4.79
181 182 0.464452 CAAGGACTACCATCCGACCC 59.536 60.000 0.00 0.00 44.22 4.46
182 183 1.041447 AAGGACTACCATCCGACCCG 61.041 60.000 0.00 0.00 44.22 5.28
183 184 2.416260 GACTACCATCCGACCCGC 59.584 66.667 0.00 0.00 0.00 6.13
184 185 3.480225 GACTACCATCCGACCCGCG 62.480 68.421 0.00 0.00 40.47 6.46
185 186 3.524606 CTACCATCCGACCCGCGT 61.525 66.667 4.92 0.00 38.67 6.01
186 187 3.480225 CTACCATCCGACCCGCGTC 62.480 68.421 4.92 0.00 38.67 5.19
188 189 4.143333 CCATCCGACCCGCGTCTT 62.143 66.667 4.92 0.00 36.82 3.01
189 190 2.582498 CATCCGACCCGCGTCTTC 60.582 66.667 4.92 0.00 36.82 2.87
190 191 3.834799 ATCCGACCCGCGTCTTCC 61.835 66.667 4.92 0.00 36.82 3.46
193 194 4.796231 CGACCCGCGTCTTCCCTG 62.796 72.222 4.92 0.00 36.82 4.45
194 195 3.379445 GACCCGCGTCTTCCCTGA 61.379 66.667 4.92 0.00 35.99 3.86
195 196 3.358076 GACCCGCGTCTTCCCTGAG 62.358 68.421 4.92 0.00 35.99 3.35
196 197 3.068691 CCCGCGTCTTCCCTGAGA 61.069 66.667 4.92 0.00 0.00 3.27
197 198 2.427245 CCCGCGTCTTCCCTGAGAT 61.427 63.158 4.92 0.00 0.00 2.75
198 199 1.227089 CCGCGTCTTCCCTGAGATG 60.227 63.158 4.92 0.00 36.07 2.90
199 200 1.513158 CGCGTCTTCCCTGAGATGT 59.487 57.895 0.00 0.00 35.54 3.06
200 201 0.526524 CGCGTCTTCCCTGAGATGTC 60.527 60.000 0.00 0.00 35.54 3.06
201 202 0.532573 GCGTCTTCCCTGAGATGTCA 59.467 55.000 0.00 0.00 35.54 3.58
202 203 1.137872 GCGTCTTCCCTGAGATGTCAT 59.862 52.381 0.00 0.00 35.54 3.06
203 204 2.801342 GCGTCTTCCCTGAGATGTCATC 60.801 54.545 4.52 4.52 35.54 2.92
204 205 2.692557 CGTCTTCCCTGAGATGTCATCT 59.307 50.000 15.40 15.40 43.70 2.90
205 206 3.885901 CGTCTTCCCTGAGATGTCATCTA 59.114 47.826 15.44 4.02 40.38 1.98
206 207 4.339530 CGTCTTCCCTGAGATGTCATCTAA 59.660 45.833 15.44 7.53 40.38 2.10
207 208 5.507149 CGTCTTCCCTGAGATGTCATCTAAG 60.507 48.000 17.66 17.66 40.38 2.18
208 209 4.343526 TCTTCCCTGAGATGTCATCTAAGC 59.656 45.833 18.83 7.25 40.38 3.09
209 210 3.921104 TCCCTGAGATGTCATCTAAGCT 58.079 45.455 18.83 0.00 40.38 3.74
210 211 3.640498 TCCCTGAGATGTCATCTAAGCTG 59.360 47.826 18.83 12.91 40.38 4.24
211 212 3.391965 CCTGAGATGTCATCTAAGCTGC 58.608 50.000 18.83 5.97 40.38 5.25
212 213 3.181468 CCTGAGATGTCATCTAAGCTGCA 60.181 47.826 18.83 9.75 40.38 4.41
213 214 4.503469 CCTGAGATGTCATCTAAGCTGCAT 60.503 45.833 18.83 0.00 40.38 3.96
214 215 4.629092 TGAGATGTCATCTAAGCTGCATC 58.371 43.478 15.44 1.14 40.38 3.91
215 216 4.100498 TGAGATGTCATCTAAGCTGCATCA 59.900 41.667 15.44 3.71 40.38 3.07
216 217 5.032327 AGATGTCATCTAAGCTGCATCAA 57.968 39.130 13.89 0.00 38.00 2.57
217 218 5.622180 AGATGTCATCTAAGCTGCATCAAT 58.378 37.500 13.89 0.00 38.00 2.57
218 219 6.062749 AGATGTCATCTAAGCTGCATCAATT 58.937 36.000 13.89 0.00 38.00 2.32
219 220 5.746307 TGTCATCTAAGCTGCATCAATTC 57.254 39.130 1.02 0.00 0.00 2.17
220 221 5.434408 TGTCATCTAAGCTGCATCAATTCT 58.566 37.500 1.02 0.00 0.00 2.40
221 222 5.884232 TGTCATCTAAGCTGCATCAATTCTT 59.116 36.000 1.02 0.00 0.00 2.52
222 223 6.037940 TGTCATCTAAGCTGCATCAATTCTTC 59.962 38.462 1.02 0.00 0.00 2.87
223 224 6.260493 GTCATCTAAGCTGCATCAATTCTTCT 59.740 38.462 1.02 0.00 0.00 2.85
224 225 6.482641 TCATCTAAGCTGCATCAATTCTTCTC 59.517 38.462 1.02 0.00 0.00 2.87
225 226 5.737860 TCTAAGCTGCATCAATTCTTCTCA 58.262 37.500 1.02 0.00 0.00 3.27
226 227 6.354938 TCTAAGCTGCATCAATTCTTCTCAT 58.645 36.000 1.02 0.00 0.00 2.90
227 228 5.502153 AAGCTGCATCAATTCTTCTCATC 57.498 39.130 1.02 0.00 0.00 2.92
228 229 4.783055 AGCTGCATCAATTCTTCTCATCT 58.217 39.130 1.02 0.00 0.00 2.90
229 230 5.926663 AGCTGCATCAATTCTTCTCATCTA 58.073 37.500 1.02 0.00 0.00 1.98
230 231 6.354938 AGCTGCATCAATTCTTCTCATCTAA 58.645 36.000 1.02 0.00 0.00 2.10
231 232 6.483974 AGCTGCATCAATTCTTCTCATCTAAG 59.516 38.462 1.02 0.00 0.00 2.18
232 233 6.293516 GCTGCATCAATTCTTCTCATCTAAGG 60.294 42.308 0.00 0.00 0.00 2.69
233 234 6.892485 TGCATCAATTCTTCTCATCTAAGGA 58.108 36.000 0.00 0.00 0.00 3.36
234 235 7.515586 TGCATCAATTCTTCTCATCTAAGGAT 58.484 34.615 0.00 0.00 0.00 3.24
236 237 7.094720 GCATCAATTCTTCTCATCTAAGGATGG 60.095 40.741 6.22 0.00 46.70 3.51
237 238 7.443302 TCAATTCTTCTCATCTAAGGATGGT 57.557 36.000 6.22 0.00 46.70 3.55
238 239 7.504403 TCAATTCTTCTCATCTAAGGATGGTC 58.496 38.462 6.22 0.00 46.70 4.02
239 240 7.126268 TCAATTCTTCTCATCTAAGGATGGTCA 59.874 37.037 6.22 0.00 46.70 4.02
240 241 6.477053 TTCTTCTCATCTAAGGATGGTCAG 57.523 41.667 6.22 0.00 46.70 3.51
241 242 4.343526 TCTTCTCATCTAAGGATGGTCAGC 59.656 45.833 6.22 0.00 46.70 4.26
242 243 3.646534 TCTCATCTAAGGATGGTCAGCA 58.353 45.455 6.22 0.00 46.70 4.41
243 244 4.229639 TCTCATCTAAGGATGGTCAGCAT 58.770 43.478 0.00 0.00 46.70 3.79
244 245 4.040095 TCTCATCTAAGGATGGTCAGCATG 59.960 45.833 0.00 0.00 46.70 4.06
245 246 3.969312 TCATCTAAGGATGGTCAGCATGA 59.031 43.478 0.00 0.00 45.55 3.07
246 247 4.409901 TCATCTAAGGATGGTCAGCATGAA 59.590 41.667 0.00 0.00 46.69 2.57
247 248 4.755629 CATCTAAGGATGGTCAGCATGAAG 59.244 45.833 0.00 0.00 43.17 3.02
248 249 5.454329 CATCTAAGGATGGTCAGCATGAAGA 60.454 44.000 0.00 0.00 43.17 2.87
249 250 6.744622 CATCTAAGGATGGTCAGCATGAAGAT 60.745 42.308 0.00 0.00 43.17 2.40
250 251 8.484453 CATCTAAGGATGGTCAGCATGAAGATC 61.484 44.444 0.00 0.00 43.17 2.75
260 261 6.732531 TCAGCATGAAGATCAGTTTACAAG 57.267 37.500 0.00 0.00 45.97 3.16
261 262 5.122869 TCAGCATGAAGATCAGTTTACAAGC 59.877 40.000 0.00 0.00 45.97 4.01
262 263 5.123502 CAGCATGAAGATCAGTTTACAAGCT 59.876 40.000 0.00 0.00 39.69 3.74
263 264 6.314648 CAGCATGAAGATCAGTTTACAAGCTA 59.685 38.462 0.00 0.00 39.69 3.32
264 265 7.012138 CAGCATGAAGATCAGTTTACAAGCTAT 59.988 37.037 0.00 0.00 39.69 2.97
265 266 8.206867 AGCATGAAGATCAGTTTACAAGCTATA 58.793 33.333 0.00 0.00 32.19 1.31
266 267 8.830580 GCATGAAGATCAGTTTACAAGCTATAA 58.169 33.333 0.00 0.00 0.00 0.98
290 291 8.970691 AAATTGTTGTAGTTAATCTCATGTGC 57.029 30.769 0.00 0.00 0.00 4.57
291 292 7.686438 ATTGTTGTAGTTAATCTCATGTGCA 57.314 32.000 0.00 0.00 0.00 4.57
292 293 7.686438 TTGTTGTAGTTAATCTCATGTGCAT 57.314 32.000 0.00 0.00 0.00 3.96
293 294 7.686438 TGTTGTAGTTAATCTCATGTGCATT 57.314 32.000 0.00 0.00 0.00 3.56
294 295 7.529158 TGTTGTAGTTAATCTCATGTGCATTG 58.471 34.615 0.00 0.00 0.00 2.82
295 296 7.174772 TGTTGTAGTTAATCTCATGTGCATTGT 59.825 33.333 0.00 0.00 0.00 2.71
296 297 8.664798 GTTGTAGTTAATCTCATGTGCATTGTA 58.335 33.333 0.00 0.00 0.00 2.41
297 298 8.962884 TGTAGTTAATCTCATGTGCATTGTAT 57.037 30.769 0.00 0.00 0.00 2.29
298 299 9.394767 TGTAGTTAATCTCATGTGCATTGTATT 57.605 29.630 0.00 0.00 0.00 1.89
299 300 9.655769 GTAGTTAATCTCATGTGCATTGTATTG 57.344 33.333 0.00 0.00 0.00 1.90
300 301 8.284945 AGTTAATCTCATGTGCATTGTATTGT 57.715 30.769 0.00 0.00 0.00 2.71
301 302 9.394767 AGTTAATCTCATGTGCATTGTATTGTA 57.605 29.630 0.00 0.00 0.00 2.41
302 303 9.655769 GTTAATCTCATGTGCATTGTATTGTAG 57.344 33.333 0.00 0.00 0.00 2.74
303 304 7.870509 AATCTCATGTGCATTGTATTGTAGT 57.129 32.000 0.00 0.00 0.00 2.73
304 305 7.870509 ATCTCATGTGCATTGTATTGTAGTT 57.129 32.000 0.00 0.00 0.00 2.24
305 306 8.962884 ATCTCATGTGCATTGTATTGTAGTTA 57.037 30.769 0.00 0.00 0.00 2.24
306 307 8.785329 TCTCATGTGCATTGTATTGTAGTTAA 57.215 30.769 0.00 0.00 0.00 2.01
307 308 9.225436 TCTCATGTGCATTGTATTGTAGTTAAA 57.775 29.630 0.00 0.00 0.00 1.52
308 309 9.838975 CTCATGTGCATTGTATTGTAGTTAAAA 57.161 29.630 0.00 0.00 0.00 1.52
324 325 9.841295 TGTAGTTAAAATATATGTTGACCCCTC 57.159 33.333 6.88 0.00 0.00 4.30
326 327 8.980481 AGTTAAAATATATGTTGACCCCTCTG 57.020 34.615 6.88 0.00 0.00 3.35
327 328 7.998964 AGTTAAAATATATGTTGACCCCTCTGG 59.001 37.037 6.88 0.00 41.37 3.86
328 329 6.590656 AAAATATATGTTGACCCCTCTGGA 57.409 37.500 0.00 0.00 38.00 3.86
329 330 6.786843 AAATATATGTTGACCCCTCTGGAT 57.213 37.500 0.00 0.00 38.00 3.41
330 331 5.768980 ATATATGTTGACCCCTCTGGATG 57.231 43.478 0.00 0.00 38.00 3.51
331 332 1.673767 ATGTTGACCCCTCTGGATGT 58.326 50.000 0.00 0.00 38.00 3.06
332 333 1.444933 TGTTGACCCCTCTGGATGTT 58.555 50.000 0.00 0.00 38.00 2.71
333 334 1.073763 TGTTGACCCCTCTGGATGTTG 59.926 52.381 0.00 0.00 38.00 3.33
334 335 0.698238 TTGACCCCTCTGGATGTTGG 59.302 55.000 0.00 0.00 38.00 3.77
335 336 0.475632 TGACCCCTCTGGATGTTGGT 60.476 55.000 0.00 0.00 38.00 3.67
336 337 0.698818 GACCCCTCTGGATGTTGGTT 59.301 55.000 0.00 0.00 38.00 3.67
337 338 0.405585 ACCCCTCTGGATGTTGGTTG 59.594 55.000 0.00 0.00 38.00 3.77
338 339 0.698238 CCCCTCTGGATGTTGGTTGA 59.302 55.000 0.00 0.00 35.39 3.18
339 340 1.285962 CCCCTCTGGATGTTGGTTGAT 59.714 52.381 0.00 0.00 35.39 2.57
340 341 2.291800 CCCCTCTGGATGTTGGTTGATT 60.292 50.000 0.00 0.00 35.39 2.57
341 342 3.053693 CCCCTCTGGATGTTGGTTGATTA 60.054 47.826 0.00 0.00 35.39 1.75
342 343 4.569653 CCCCTCTGGATGTTGGTTGATTAA 60.570 45.833 0.00 0.00 35.39 1.40
343 344 5.016173 CCCTCTGGATGTTGGTTGATTAAA 58.984 41.667 0.00 0.00 0.00 1.52
344 345 5.480073 CCCTCTGGATGTTGGTTGATTAAAA 59.520 40.000 0.00 0.00 0.00 1.52
345 346 6.014669 CCCTCTGGATGTTGGTTGATTAAAAA 60.015 38.462 0.00 0.00 0.00 1.94
346 347 7.310609 CCCTCTGGATGTTGGTTGATTAAAAAT 60.311 37.037 0.00 0.00 0.00 1.82
347 348 8.096414 CCTCTGGATGTTGGTTGATTAAAAATT 58.904 33.333 0.00 0.00 0.00 1.82
350 351 9.927668 CTGGATGTTGGTTGATTAAAAATTAGT 57.072 29.630 0.00 0.00 0.00 2.24
351 352 9.703892 TGGATGTTGGTTGATTAAAAATTAGTG 57.296 29.630 0.00 0.00 0.00 2.74
352 353 9.921637 GGATGTTGGTTGATTAAAAATTAGTGA 57.078 29.630 0.00 0.00 0.00 3.41
391 392 8.963725 AGCTTGTAATTTACCAAAGTATTACCC 58.036 33.333 4.17 0.00 28.88 3.69
392 393 8.963725 GCTTGTAATTTACCAAAGTATTACCCT 58.036 33.333 4.17 0.00 28.88 4.34
394 395 8.283699 TGTAATTTACCAAAGTATTACCCTGC 57.716 34.615 4.17 0.00 28.88 4.85
395 396 7.889073 TGTAATTTACCAAAGTATTACCCTGCA 59.111 33.333 4.17 0.00 28.88 4.41
396 397 7.971368 AATTTACCAAAGTATTACCCTGCAT 57.029 32.000 0.00 0.00 0.00 3.96
397 398 7.971368 ATTTACCAAAGTATTACCCTGCATT 57.029 32.000 0.00 0.00 0.00 3.56
398 399 7.784470 TTTACCAAAGTATTACCCTGCATTT 57.216 32.000 0.00 0.00 0.00 2.32
399 400 7.784470 TTACCAAAGTATTACCCTGCATTTT 57.216 32.000 0.00 0.00 0.00 1.82
400 401 6.680148 ACCAAAGTATTACCCTGCATTTTT 57.320 33.333 0.00 0.00 0.00 1.94
430 431 9.313118 CCAAAGTATTTATTTGAAATAGGGTGC 57.687 33.333 0.00 0.00 39.50 5.01
431 432 9.313118 CAAAGTATTTATTTGAAATAGGGTGCC 57.687 33.333 0.00 0.00 39.50 5.01
432 433 8.838649 AAGTATTTATTTGAAATAGGGTGCCT 57.161 30.769 0.00 0.00 37.71 4.75
433 434 9.930158 AAGTATTTATTTGAAATAGGGTGCCTA 57.070 29.630 0.00 0.00 40.71 3.93
434 435 9.574516 AGTATTTATTTGAAATAGGGTGCCTAG 57.425 33.333 0.00 0.00 39.70 3.02
435 436 7.839680 ATTTATTTGAAATAGGGTGCCTAGG 57.160 36.000 3.67 3.67 39.70 3.02
436 437 4.881157 ATTTGAAATAGGGTGCCTAGGT 57.119 40.909 11.31 0.00 39.70 3.08
437 438 3.644966 TTGAAATAGGGTGCCTAGGTG 57.355 47.619 11.31 0.00 39.70 4.00
438 439 1.211949 TGAAATAGGGTGCCTAGGTGC 59.788 52.381 11.31 3.33 39.70 5.01
439 440 0.551396 AAATAGGGTGCCTAGGTGCC 59.449 55.000 11.31 12.54 39.70 5.01
440 441 1.353394 AATAGGGTGCCTAGGTGCCC 61.353 60.000 26.13 26.13 39.70 5.36
441 442 4.354943 AGGGTGCCTAGGTGCCCT 62.355 66.667 28.84 28.84 46.02 5.19
442 443 3.339093 GGGTGCCTAGGTGCCCTT 61.339 66.667 26.15 0.00 38.12 3.95
443 444 2.044946 GGTGCCTAGGTGCCCTTG 60.045 66.667 11.31 0.00 34.61 3.61
444 445 2.757077 GTGCCTAGGTGCCCTTGT 59.243 61.111 11.31 0.00 34.61 3.16
445 446 1.074951 GTGCCTAGGTGCCCTTGTT 59.925 57.895 11.31 0.00 34.61 2.83
446 447 0.960861 GTGCCTAGGTGCCCTTGTTC 60.961 60.000 11.31 0.00 34.61 3.18
447 448 1.378762 GCCTAGGTGCCCTTGTTCA 59.621 57.895 11.31 0.00 34.61 3.18
448 449 0.960861 GCCTAGGTGCCCTTGTTCAC 60.961 60.000 11.31 0.00 34.61 3.18
454 455 2.908688 GTGCCCTTGTTCACCATTTT 57.091 45.000 0.00 0.00 0.00 1.82
455 456 3.192541 GTGCCCTTGTTCACCATTTTT 57.807 42.857 0.00 0.00 0.00 1.94
476 477 4.491234 TTGTAATAGGTTTGTTGTGCCG 57.509 40.909 0.00 0.00 0.00 5.69
477 478 2.814919 TGTAATAGGTTTGTTGTGCCGG 59.185 45.455 0.00 0.00 0.00 6.13
478 479 0.601057 AATAGGTTTGTTGTGCCGGC 59.399 50.000 22.73 22.73 0.00 6.13
479 480 0.538516 ATAGGTTTGTTGTGCCGGCA 60.539 50.000 29.03 29.03 0.00 5.69
480 481 0.538516 TAGGTTTGTTGTGCCGGCAT 60.539 50.000 35.23 16.02 0.00 4.40
481 482 1.372872 GGTTTGTTGTGCCGGCATC 60.373 57.895 35.23 25.34 0.00 3.91
482 483 1.659794 GTTTGTTGTGCCGGCATCT 59.340 52.632 35.23 0.00 0.00 2.90
483 484 0.878416 GTTTGTTGTGCCGGCATCTA 59.122 50.000 35.23 19.58 0.00 1.98
484 485 1.135689 GTTTGTTGTGCCGGCATCTAG 60.136 52.381 35.23 0.00 0.00 2.43
485 486 0.323302 TTGTTGTGCCGGCATCTAGA 59.677 50.000 35.23 17.97 0.00 2.43
486 487 0.108186 TGTTGTGCCGGCATCTAGAG 60.108 55.000 35.23 0.00 0.00 2.43
487 488 0.811616 GTTGTGCCGGCATCTAGAGG 60.812 60.000 35.23 0.00 0.00 3.69
488 489 1.264749 TTGTGCCGGCATCTAGAGGT 61.265 55.000 35.23 0.00 0.00 3.85
489 490 0.396556 TGTGCCGGCATCTAGAGGTA 60.397 55.000 35.23 0.86 0.00 3.08
490 491 0.315568 GTGCCGGCATCTAGAGGTAG 59.684 60.000 35.23 0.55 0.00 3.18
491 492 1.290639 GCCGGCATCTAGAGGTAGC 59.709 63.158 24.80 3.21 0.00 3.58
492 493 1.464376 GCCGGCATCTAGAGGTAGCA 61.464 60.000 24.80 0.00 0.00 3.49
493 494 1.261480 CCGGCATCTAGAGGTAGCAT 58.739 55.000 6.23 0.00 0.00 3.79
494 495 1.620819 CCGGCATCTAGAGGTAGCATT 59.379 52.381 6.23 0.00 0.00 3.56
495 496 2.826128 CCGGCATCTAGAGGTAGCATTA 59.174 50.000 6.23 0.00 0.00 1.90
496 497 3.367498 CCGGCATCTAGAGGTAGCATTAC 60.367 52.174 6.23 0.00 0.00 1.89
497 498 3.508012 CGGCATCTAGAGGTAGCATTACT 59.492 47.826 6.23 0.00 0.00 2.24
498 499 4.380023 CGGCATCTAGAGGTAGCATTACTC 60.380 50.000 6.23 0.00 0.00 2.59
847 848 5.431650 CGACTACGTACTTCATTTTCCAC 57.568 43.478 0.00 0.00 34.56 4.02
848 849 4.325472 CGACTACGTACTTCATTTTCCACC 59.675 45.833 0.00 0.00 34.56 4.61
849 850 4.572909 ACTACGTACTTCATTTTCCACCC 58.427 43.478 0.00 0.00 0.00 4.61
850 851 3.495434 ACGTACTTCATTTTCCACCCA 57.505 42.857 0.00 0.00 0.00 4.51
851 852 3.822940 ACGTACTTCATTTTCCACCCAA 58.177 40.909 0.00 0.00 0.00 4.12
852 853 4.208746 ACGTACTTCATTTTCCACCCAAA 58.791 39.130 0.00 0.00 0.00 3.28
853 854 4.277423 ACGTACTTCATTTTCCACCCAAAG 59.723 41.667 0.00 0.00 0.00 2.77
854 855 4.517453 CGTACTTCATTTTCCACCCAAAGA 59.483 41.667 0.00 0.00 0.00 2.52
855 856 5.009210 CGTACTTCATTTTCCACCCAAAGAA 59.991 40.000 0.00 0.00 0.00 2.52
856 857 5.948742 ACTTCATTTTCCACCCAAAGAAA 57.051 34.783 0.00 0.00 0.00 2.52
857 858 6.306643 ACTTCATTTTCCACCCAAAGAAAA 57.693 33.333 0.88 0.88 43.85 2.29
858 859 6.348498 ACTTCATTTTCCACCCAAAGAAAAG 58.652 36.000 4.49 0.00 43.19 2.27
859 860 5.289083 TCATTTTCCACCCAAAGAAAAGG 57.711 39.130 4.09 4.09 43.19 3.11
860 861 4.965532 TCATTTTCCACCCAAAGAAAAGGA 59.034 37.500 8.09 8.09 45.30 3.36
861 862 5.606329 TCATTTTCCACCCAAAGAAAAGGAT 59.394 36.000 8.09 0.00 43.70 3.24
862 863 6.784969 TCATTTTCCACCCAAAGAAAAGGATA 59.215 34.615 8.09 0.00 43.70 2.59
863 864 7.291182 TCATTTTCCACCCAAAGAAAAGGATAA 59.709 33.333 8.09 0.00 43.70 1.75
917 918 4.396478 TGTTCCACGTGTCAAGAATGAAAA 59.604 37.500 15.65 0.24 37.30 2.29
921 922 2.948979 ACGTGTCAAGAATGAAAAGCCA 59.051 40.909 0.00 0.00 37.30 4.75
928 929 1.808945 AGAATGAAAAGCCACTCAGCG 59.191 47.619 0.00 0.00 38.01 5.18
1053 1058 1.073199 CCACCACTCACCACCTTCC 59.927 63.158 0.00 0.00 0.00 3.46
1054 1059 1.418908 CCACCACTCACCACCTTCCT 61.419 60.000 0.00 0.00 0.00 3.36
1117 1122 3.842923 ACCTCGCCATGCTCTCCG 61.843 66.667 0.00 0.00 0.00 4.63
1189 1201 2.515523 CCCAGGGCATCTTCAGCG 60.516 66.667 0.00 0.00 0.00 5.18
1199 1211 1.462283 CATCTTCAGCGACAACACCAG 59.538 52.381 0.00 0.00 0.00 4.00
1249 1261 9.058174 TCCGAATTGAACTAGTTTTTATTGACA 57.942 29.630 10.02 0.00 0.00 3.58
1395 1412 0.179161 GAGATGACCGTCCGTGACAG 60.179 60.000 0.00 0.00 32.09 3.51
1550 1572 1.611474 ATTGCCTGCAGCTCGAGAGA 61.611 55.000 18.75 0.00 44.23 3.10
1664 1686 2.224378 CCTCTACTGGTATGTGCATGGG 60.224 54.545 0.00 0.00 0.00 4.00
1686 1708 4.572795 GGACATCCGAAATCTCTTCTTTCC 59.427 45.833 0.00 0.00 30.47 3.13
1726 3088 0.174389 CTCTAAGGCTCTGCTCGCAA 59.826 55.000 0.00 0.00 0.00 4.85
1732 3094 1.589716 GGCTCTGCTCGCAATGGTTT 61.590 55.000 0.00 0.00 0.00 3.27
1743 3105 7.594714 TGCTCGCAATGGTTTTAAAATTAGTA 58.405 30.769 3.52 0.00 0.00 1.82
1747 3109 7.976734 TCGCAATGGTTTTAAAATTAGTATGGG 59.023 33.333 3.52 7.70 0.00 4.00
1751 3113 7.784470 TGGTTTTAAAATTAGTATGGGCACT 57.216 32.000 3.52 0.00 0.00 4.40
1765 3127 1.342819 GGGCACTGGTATCTAGCTCAG 59.657 57.143 0.00 0.00 0.00 3.35
1768 3130 3.452474 GCACTGGTATCTAGCTCAGTTG 58.548 50.000 0.97 0.18 38.27 3.16
1774 3136 4.526650 TGGTATCTAGCTCAGTTGTGAACA 59.473 41.667 0.00 0.00 30.14 3.18
1875 3243 7.903145 ACCCCCAAATCTCAAGTTTTAATAAC 58.097 34.615 0.00 0.00 0.00 1.89
1876 3244 7.038587 ACCCCCAAATCTCAAGTTTTAATAACC 60.039 37.037 0.00 0.00 0.00 2.85
1877 3245 7.038658 CCCCCAAATCTCAAGTTTTAATAACCA 60.039 37.037 0.00 0.00 0.00 3.67
1878 3246 7.817478 CCCCAAATCTCAAGTTTTAATAACCAC 59.183 37.037 0.00 0.00 0.00 4.16
1909 3291 5.874810 GCATTGATTAATATCCAGCGAGGTA 59.125 40.000 0.00 0.00 39.02 3.08
2029 3420 1.518325 AACGATGGATGTTGAACGCA 58.482 45.000 0.00 0.00 0.00 5.24
2101 3504 6.283694 TGTGTATGTTGATCTCCTCTAATGC 58.716 40.000 0.00 0.00 0.00 3.56
2367 3780 5.710099 TGGTTCTAGGCCAAAGTTTCATTAG 59.290 40.000 5.01 0.00 32.29 1.73
2700 5388 4.889241 GCAATATGCACAAATCAAGCAAC 58.111 39.130 0.00 0.00 44.26 4.17
2713 5401 7.227116 ACAAATCAAGCAACAACTTTATGCAAT 59.773 29.630 0.00 0.00 42.45 3.56
2779 5499 5.778161 TGACAATATACAACAACGAGCAG 57.222 39.130 0.00 0.00 0.00 4.24
2839 5560 2.673775 TCATGGGCTGTTTCTTGGAA 57.326 45.000 0.00 0.00 0.00 3.53
2840 5561 2.956132 TCATGGGCTGTTTCTTGGAAA 58.044 42.857 0.00 0.00 0.00 3.13
2895 5616 4.369182 CCCGACAACAACTATATGAGTCC 58.631 47.826 0.00 0.00 37.44 3.85
2951 5678 4.832248 GACTTAGGGTCAATGACATGTGA 58.168 43.478 15.86 0.00 43.94 3.58
2952 5679 5.241403 ACTTAGGGTCAATGACATGTGAA 57.759 39.130 15.86 0.00 33.68 3.18
2971 5698 5.221380 GTGAAGTCACAAACCTGATGGTCA 61.221 45.833 6.57 0.00 45.23 4.02
2980 5707 3.507162 ACCTGATGGTCAACATGTCAA 57.493 42.857 0.00 0.00 44.78 3.18
3004 5731 3.628008 ACCCTATGTCACACGAGATACA 58.372 45.455 0.00 0.00 0.00 2.29
3024 5751 7.624077 AGATACAACCCTAAGTCAGTTAATCCT 59.376 37.037 0.00 0.00 0.00 3.24
3025 5752 8.849543 ATACAACCCTAAGTCAGTTAATCCTA 57.150 34.615 0.00 0.00 0.00 2.94
3026 5753 7.563724 ACAACCCTAAGTCAGTTAATCCTAA 57.436 36.000 0.00 0.00 0.00 2.69
3027 5754 8.159229 ACAACCCTAAGTCAGTTAATCCTAAT 57.841 34.615 0.00 0.00 0.00 1.73
3106 5834 4.468095 ACAAACGCAACTAATGACTCAC 57.532 40.909 0.00 0.00 0.00 3.51
3145 6615 9.290988 TGATTGTAATTAGCAACCTGAACTAAA 57.709 29.630 3.59 0.00 30.23 1.85
3148 6618 9.959749 TTGTAATTAGCAACCTGAACTAAAAAG 57.040 29.630 0.00 0.00 30.23 2.27
3201 6678 9.458727 ACTTTTGATCTATTCATCAACTGTCAT 57.541 29.630 0.00 0.00 41.52 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.970020 TGAGCAATGTTGGAAATATGAGTAATT 58.030 29.630 0.00 0.00 0.00 1.40
3 4 7.936496 TGAGCAATGTTGGAAATATGAGTAA 57.064 32.000 0.00 0.00 0.00 2.24
4 5 7.392953 TGTTGAGCAATGTTGGAAATATGAGTA 59.607 33.333 0.00 0.00 0.00 2.59
5 6 6.209192 TGTTGAGCAATGTTGGAAATATGAGT 59.791 34.615 0.00 0.00 0.00 3.41
6 7 6.623486 TGTTGAGCAATGTTGGAAATATGAG 58.377 36.000 0.00 0.00 0.00 2.90
7 8 6.587206 TGTTGAGCAATGTTGGAAATATGA 57.413 33.333 0.00 0.00 0.00 2.15
9 10 7.172868 TCATGTTGAGCAATGTTGGAAATAT 57.827 32.000 0.00 0.00 0.00 1.28
10 11 6.587206 TCATGTTGAGCAATGTTGGAAATA 57.413 33.333 0.00 0.00 0.00 1.40
11 12 5.471556 TCATGTTGAGCAATGTTGGAAAT 57.528 34.783 0.00 0.00 0.00 2.17
12 13 4.933505 TCATGTTGAGCAATGTTGGAAA 57.066 36.364 0.00 0.00 0.00 3.13
13 14 4.619973 GTTCATGTTGAGCAATGTTGGAA 58.380 39.130 0.00 0.00 0.00 3.53
14 15 3.304592 CGTTCATGTTGAGCAATGTTGGA 60.305 43.478 0.00 0.00 0.00 3.53
15 16 2.981805 CGTTCATGTTGAGCAATGTTGG 59.018 45.455 0.00 0.00 0.00 3.77
16 17 2.406024 GCGTTCATGTTGAGCAATGTTG 59.594 45.455 0.00 0.00 0.00 3.33
17 18 2.664916 GCGTTCATGTTGAGCAATGTT 58.335 42.857 0.00 0.00 0.00 2.71
18 19 1.400113 CGCGTTCATGTTGAGCAATGT 60.400 47.619 0.00 0.00 0.00 2.71
19 20 1.253116 CGCGTTCATGTTGAGCAATG 58.747 50.000 0.00 0.00 0.00 2.82
20 21 0.454957 GCGCGTTCATGTTGAGCAAT 60.455 50.000 8.43 0.00 0.00 3.56
21 22 1.082169 GCGCGTTCATGTTGAGCAA 60.082 52.632 8.43 0.00 0.00 3.91
22 23 2.555782 GCGCGTTCATGTTGAGCA 59.444 55.556 8.43 0.00 0.00 4.26
23 24 2.202349 GGCGCGTTCATGTTGAGC 60.202 61.111 8.43 0.00 0.00 4.26
24 25 2.096406 CGGCGCGTTCATGTTGAG 59.904 61.111 8.43 0.00 0.00 3.02
25 26 2.356433 TCGGCGCGTTCATGTTGA 60.356 55.556 8.43 0.00 0.00 3.18
26 27 2.096406 CTCGGCGCGTTCATGTTG 59.904 61.111 8.43 0.00 0.00 3.33
27 28 2.357034 ACTCGGCGCGTTCATGTT 60.357 55.556 8.43 0.00 0.00 2.71
28 29 2.809601 GACTCGGCGCGTTCATGT 60.810 61.111 8.43 0.31 0.00 3.21
29 30 3.554692 GGACTCGGCGCGTTCATG 61.555 66.667 8.43 0.00 0.00 3.07
30 31 2.781595 AAAGGACTCGGCGCGTTCAT 62.782 55.000 11.34 0.00 0.00 2.57
31 32 2.144833 TAAAGGACTCGGCGCGTTCA 62.145 55.000 11.34 0.00 0.00 3.18
32 33 0.804933 ATAAAGGACTCGGCGCGTTC 60.805 55.000 8.43 0.91 0.00 3.95
33 34 0.457035 TATAAAGGACTCGGCGCGTT 59.543 50.000 8.43 0.00 0.00 4.84
34 35 0.672342 ATATAAAGGACTCGGCGCGT 59.328 50.000 8.43 0.46 0.00 6.01
35 36 1.455786 CAATATAAAGGACTCGGCGCG 59.544 52.381 0.00 0.00 0.00 6.86
36 37 2.750948 TCAATATAAAGGACTCGGCGC 58.249 47.619 0.00 0.00 0.00 6.53
37 38 7.545965 AGATTTATCAATATAAAGGACTCGGCG 59.454 37.037 0.00 0.00 40.11 6.46
38 39 8.779354 AGATTTATCAATATAAAGGACTCGGC 57.221 34.615 0.00 0.00 40.11 5.54
39 40 9.929180 TGAGATTTATCAATATAAAGGACTCGG 57.071 33.333 0.00 0.00 40.11 4.63
53 54 9.844790 CAATAGTGCTTGTTTGAGATTTATCAA 57.155 29.630 0.00 0.00 37.41 2.57
54 55 9.230122 TCAATAGTGCTTGTTTGAGATTTATCA 57.770 29.630 0.00 0.00 0.00 2.15
57 58 9.230122 TGATCAATAGTGCTTGTTTGAGATTTA 57.770 29.630 0.00 0.00 32.13 1.40
58 59 8.114331 TGATCAATAGTGCTTGTTTGAGATTT 57.886 30.769 0.00 0.00 32.13 2.17
59 60 7.692460 TGATCAATAGTGCTTGTTTGAGATT 57.308 32.000 0.00 0.00 32.13 2.40
60 61 7.692460 TTGATCAATAGTGCTTGTTTGAGAT 57.308 32.000 3.38 0.00 32.13 2.75
61 62 7.148188 GGATTGATCAATAGTGCTTGTTTGAGA 60.148 37.037 20.75 0.00 32.13 3.27
62 63 6.971184 GGATTGATCAATAGTGCTTGTTTGAG 59.029 38.462 20.75 0.00 32.13 3.02
63 64 6.127647 GGGATTGATCAATAGTGCTTGTTTGA 60.128 38.462 20.75 0.00 33.06 2.69
64 65 6.038356 GGGATTGATCAATAGTGCTTGTTTG 58.962 40.000 20.75 0.00 0.00 2.93
65 66 5.716228 TGGGATTGATCAATAGTGCTTGTTT 59.284 36.000 20.75 0.00 0.00 2.83
66 67 5.126061 GTGGGATTGATCAATAGTGCTTGTT 59.874 40.000 20.75 0.00 0.00 2.83
67 68 4.641989 GTGGGATTGATCAATAGTGCTTGT 59.358 41.667 20.75 0.00 0.00 3.16
68 69 4.641541 TGTGGGATTGATCAATAGTGCTTG 59.358 41.667 20.75 0.00 0.00 4.01
69 70 4.641989 GTGTGGGATTGATCAATAGTGCTT 59.358 41.667 20.75 0.00 0.00 3.91
70 71 4.202441 GTGTGGGATTGATCAATAGTGCT 58.798 43.478 20.75 0.00 0.00 4.40
71 72 3.002656 CGTGTGGGATTGATCAATAGTGC 59.997 47.826 20.75 11.99 0.00 4.40
72 73 3.002656 GCGTGTGGGATTGATCAATAGTG 59.997 47.826 20.75 8.09 0.00 2.74
73 74 3.206150 GCGTGTGGGATTGATCAATAGT 58.794 45.455 20.75 0.00 0.00 2.12
74 75 3.002656 GTGCGTGTGGGATTGATCAATAG 59.997 47.826 20.75 7.81 0.00 1.73
75 76 2.942376 GTGCGTGTGGGATTGATCAATA 59.058 45.455 20.75 3.03 0.00 1.90
76 77 1.745087 GTGCGTGTGGGATTGATCAAT 59.255 47.619 20.85 20.85 0.00 2.57
77 78 1.164411 GTGCGTGTGGGATTGATCAA 58.836 50.000 11.26 11.26 0.00 2.57
78 79 1.018752 CGTGCGTGTGGGATTGATCA 61.019 55.000 0.00 0.00 0.00 2.92
79 80 1.715585 CGTGCGTGTGGGATTGATC 59.284 57.895 0.00 0.00 0.00 2.92
80 81 2.398554 GCGTGCGTGTGGGATTGAT 61.399 57.895 0.00 0.00 0.00 2.57
81 82 3.047280 GCGTGCGTGTGGGATTGA 61.047 61.111 0.00 0.00 0.00 2.57
82 83 3.027170 GAGCGTGCGTGTGGGATTG 62.027 63.158 0.00 0.00 0.00 2.67
83 84 2.742372 GAGCGTGCGTGTGGGATT 60.742 61.111 0.00 0.00 0.00 3.01
97 98 1.032657 TAGAGGAGACCAGCACGAGC 61.033 60.000 0.00 0.00 42.56 5.03
98 99 1.464734 TTAGAGGAGACCAGCACGAG 58.535 55.000 0.00 0.00 0.00 4.18
99 100 1.751351 CATTAGAGGAGACCAGCACGA 59.249 52.381 0.00 0.00 0.00 4.35
100 101 1.202463 CCATTAGAGGAGACCAGCACG 60.202 57.143 0.00 0.00 0.00 5.34
101 102 1.474143 GCCATTAGAGGAGACCAGCAC 60.474 57.143 0.00 0.00 0.00 4.40
102 103 0.833287 GCCATTAGAGGAGACCAGCA 59.167 55.000 0.00 0.00 0.00 4.41
103 104 0.833287 TGCCATTAGAGGAGACCAGC 59.167 55.000 0.00 0.00 0.00 4.85
104 105 1.202627 GCTGCCATTAGAGGAGACCAG 60.203 57.143 0.00 0.00 0.00 4.00
105 106 0.833287 GCTGCCATTAGAGGAGACCA 59.167 55.000 0.00 0.00 0.00 4.02
106 107 0.107643 GGCTGCCATTAGAGGAGACC 59.892 60.000 15.17 0.00 0.00 3.85
107 108 1.127343 AGGCTGCCATTAGAGGAGAC 58.873 55.000 22.65 0.00 0.00 3.36
108 109 1.126488 CAGGCTGCCATTAGAGGAGA 58.874 55.000 22.65 0.00 0.00 3.71
109 110 0.835941 ACAGGCTGCCATTAGAGGAG 59.164 55.000 22.65 1.42 0.00 3.69
110 111 2.174685 TACAGGCTGCCATTAGAGGA 57.825 50.000 22.65 0.00 0.00 3.71
111 112 3.144506 CAATACAGGCTGCCATTAGAGG 58.855 50.000 22.65 3.49 0.00 3.69
112 113 3.144506 CCAATACAGGCTGCCATTAGAG 58.855 50.000 22.65 6.32 0.00 2.43
113 114 2.777114 TCCAATACAGGCTGCCATTAGA 59.223 45.455 22.65 10.09 0.00 2.10
114 115 3.213206 TCCAATACAGGCTGCCATTAG 57.787 47.619 22.65 10.02 0.00 1.73
115 116 3.554934 CTTCCAATACAGGCTGCCATTA 58.445 45.455 22.65 11.52 0.00 1.90
116 117 2.381911 CTTCCAATACAGGCTGCCATT 58.618 47.619 22.65 11.61 0.00 3.16
117 118 2.025863 GCTTCCAATACAGGCTGCCAT 61.026 52.381 22.65 11.17 0.00 4.40
118 119 0.680921 GCTTCCAATACAGGCTGCCA 60.681 55.000 22.65 2.65 0.00 4.92
119 120 1.718757 CGCTTCCAATACAGGCTGCC 61.719 60.000 15.89 11.65 0.00 4.85
120 121 0.744414 TCGCTTCCAATACAGGCTGC 60.744 55.000 15.89 0.00 0.00 5.25
121 122 1.009829 GTCGCTTCCAATACAGGCTG 58.990 55.000 14.16 14.16 0.00 4.85
122 123 0.613260 TGTCGCTTCCAATACAGGCT 59.387 50.000 0.00 0.00 0.00 4.58
123 124 1.009829 CTGTCGCTTCCAATACAGGC 58.990 55.000 0.00 0.00 36.53 4.85
124 125 1.009829 GCTGTCGCTTCCAATACAGG 58.990 55.000 0.00 0.00 39.75 4.00
125 126 0.647410 CGCTGTCGCTTCCAATACAG 59.353 55.000 0.00 0.00 41.78 2.74
126 127 0.245266 TCGCTGTCGCTTCCAATACA 59.755 50.000 0.00 0.00 35.26 2.29
127 128 0.645868 GTCGCTGTCGCTTCCAATAC 59.354 55.000 0.00 0.00 35.26 1.89
128 129 0.459585 GGTCGCTGTCGCTTCCAATA 60.460 55.000 0.00 0.00 35.26 1.90
129 130 1.741770 GGTCGCTGTCGCTTCCAAT 60.742 57.895 0.00 0.00 35.26 3.16
130 131 2.357034 GGTCGCTGTCGCTTCCAA 60.357 61.111 0.00 0.00 35.26 3.53
131 132 4.717629 CGGTCGCTGTCGCTTCCA 62.718 66.667 0.00 0.00 35.26 3.53
132 133 4.719369 ACGGTCGCTGTCGCTTCC 62.719 66.667 0.00 0.00 35.26 3.46
133 134 3.173240 GACGGTCGCTGTCGCTTC 61.173 66.667 0.00 0.00 35.26 3.86
144 145 4.477975 CCGAGGCAGACGACGGTC 62.478 72.222 0.00 0.00 43.76 4.79
155 156 1.972660 ATGGTAGTCCTTGCCGAGGC 61.973 60.000 7.26 7.26 45.87 4.70
157 158 0.105039 GGATGGTAGTCCTTGCCGAG 59.895 60.000 0.00 0.00 35.32 4.63
158 159 1.672854 CGGATGGTAGTCCTTGCCGA 61.673 60.000 0.00 0.00 35.64 5.54
159 160 1.227263 CGGATGGTAGTCCTTGCCG 60.227 63.158 0.00 0.00 36.07 5.69
160 161 0.179081 GTCGGATGGTAGTCCTTGCC 60.179 60.000 0.00 0.00 36.07 4.52
161 162 0.179081 GGTCGGATGGTAGTCCTTGC 60.179 60.000 0.00 0.00 36.07 4.01
162 163 0.464452 GGGTCGGATGGTAGTCCTTG 59.536 60.000 0.00 0.00 36.07 3.61
163 164 1.041447 CGGGTCGGATGGTAGTCCTT 61.041 60.000 0.00 0.00 36.07 3.36
164 165 1.455217 CGGGTCGGATGGTAGTCCT 60.455 63.158 0.00 0.00 36.07 3.85
165 166 3.126528 CGGGTCGGATGGTAGTCC 58.873 66.667 0.00 0.00 34.82 3.85
166 167 2.416260 GCGGGTCGGATGGTAGTC 59.584 66.667 0.00 0.00 0.00 2.59
167 168 3.524606 CGCGGGTCGGATGGTAGT 61.525 66.667 0.00 0.00 33.78 2.73
168 169 3.480225 GACGCGGGTCGGATGGTAG 62.480 68.421 17.36 0.00 43.86 3.18
169 170 3.520862 GACGCGGGTCGGATGGTA 61.521 66.667 17.36 0.00 43.86 3.25
177 178 3.358076 CTCAGGGAAGACGCGGGTC 62.358 68.421 23.85 23.85 43.76 4.46
178 179 3.382832 CTCAGGGAAGACGCGGGT 61.383 66.667 12.47 4.12 0.00 5.28
179 180 2.427245 ATCTCAGGGAAGACGCGGG 61.427 63.158 12.47 0.00 0.00 6.13
180 181 1.227089 CATCTCAGGGAAGACGCGG 60.227 63.158 12.47 0.00 0.00 6.46
181 182 0.526524 GACATCTCAGGGAAGACGCG 60.527 60.000 3.53 3.53 0.00 6.01
182 183 0.532573 TGACATCTCAGGGAAGACGC 59.467 55.000 0.00 0.00 0.00 5.19
183 184 2.692557 AGATGACATCTCAGGGAAGACG 59.307 50.000 12.37 0.00 33.42 4.18
184 185 5.738783 GCTTAGATGACATCTCAGGGAAGAC 60.739 48.000 21.20 10.91 40.76 3.01
185 186 4.343526 GCTTAGATGACATCTCAGGGAAGA 59.656 45.833 21.20 0.00 40.76 2.87
186 187 4.344679 AGCTTAGATGACATCTCAGGGAAG 59.655 45.833 21.20 18.06 40.76 3.46
187 188 4.100653 CAGCTTAGATGACATCTCAGGGAA 59.899 45.833 21.20 9.03 40.76 3.97
188 189 3.640498 CAGCTTAGATGACATCTCAGGGA 59.360 47.826 21.20 0.82 40.76 4.20
189 190 3.803021 GCAGCTTAGATGACATCTCAGGG 60.803 52.174 21.20 10.83 40.76 4.45
190 191 3.181468 TGCAGCTTAGATGACATCTCAGG 60.181 47.826 21.20 13.03 40.76 3.86
191 192 4.056092 TGCAGCTTAGATGACATCTCAG 57.944 45.455 21.20 19.69 40.76 3.35
192 193 4.100498 TGATGCAGCTTAGATGACATCTCA 59.900 41.667 21.20 12.23 40.76 3.27
193 194 4.629092 TGATGCAGCTTAGATGACATCTC 58.371 43.478 21.20 7.79 40.76 2.75
194 195 4.684484 TGATGCAGCTTAGATGACATCT 57.316 40.909 21.31 21.31 43.33 2.90
195 196 5.943706 ATTGATGCAGCTTAGATGACATC 57.056 39.130 19.81 19.81 34.56 3.06
196 197 6.062749 AGAATTGATGCAGCTTAGATGACAT 58.937 36.000 2.53 4.41 0.00 3.06
197 198 5.434408 AGAATTGATGCAGCTTAGATGACA 58.566 37.500 2.53 0.00 0.00 3.58
198 199 6.260493 AGAAGAATTGATGCAGCTTAGATGAC 59.740 38.462 2.53 0.00 0.00 3.06
199 200 6.354938 AGAAGAATTGATGCAGCTTAGATGA 58.645 36.000 2.53 0.00 0.00 2.92
200 201 6.260271 TGAGAAGAATTGATGCAGCTTAGATG 59.740 38.462 2.53 0.00 0.00 2.90
201 202 6.354938 TGAGAAGAATTGATGCAGCTTAGAT 58.645 36.000 2.53 0.00 0.00 1.98
202 203 5.737860 TGAGAAGAATTGATGCAGCTTAGA 58.262 37.500 2.53 0.00 0.00 2.10
203 204 6.483974 AGATGAGAAGAATTGATGCAGCTTAG 59.516 38.462 2.53 0.00 0.00 2.18
204 205 6.354938 AGATGAGAAGAATTGATGCAGCTTA 58.645 36.000 2.53 0.00 0.00 3.09
205 206 5.194432 AGATGAGAAGAATTGATGCAGCTT 58.806 37.500 2.53 0.00 0.00 3.74
206 207 4.783055 AGATGAGAAGAATTGATGCAGCT 58.217 39.130 2.53 0.00 0.00 4.24
207 208 6.293516 CCTTAGATGAGAAGAATTGATGCAGC 60.294 42.308 0.00 0.00 0.00 5.25
208 209 6.990939 TCCTTAGATGAGAAGAATTGATGCAG 59.009 38.462 0.00 0.00 0.00 4.41
209 210 6.892485 TCCTTAGATGAGAAGAATTGATGCA 58.108 36.000 0.00 0.00 0.00 3.96
210 211 7.982761 ATCCTTAGATGAGAAGAATTGATGC 57.017 36.000 0.00 0.00 0.00 3.91
225 226 4.657504 TCTTCATGCTGACCATCCTTAGAT 59.342 41.667 0.00 0.00 29.71 1.98
226 227 4.033009 TCTTCATGCTGACCATCCTTAGA 58.967 43.478 0.00 0.00 29.71 2.10
227 228 4.412796 TCTTCATGCTGACCATCCTTAG 57.587 45.455 0.00 0.00 29.71 2.18
228 229 4.409901 TGATCTTCATGCTGACCATCCTTA 59.590 41.667 0.00 0.00 29.71 2.69
229 230 3.201487 TGATCTTCATGCTGACCATCCTT 59.799 43.478 0.00 0.00 29.71 3.36
230 231 2.775960 TGATCTTCATGCTGACCATCCT 59.224 45.455 0.00 0.00 29.71 3.24
231 232 3.139850 CTGATCTTCATGCTGACCATCC 58.860 50.000 0.00 0.00 29.71 3.51
232 233 3.806380 ACTGATCTTCATGCTGACCATC 58.194 45.455 0.00 0.00 29.71 3.51
233 234 3.928005 ACTGATCTTCATGCTGACCAT 57.072 42.857 0.00 0.00 33.39 3.55
234 235 3.708403 AACTGATCTTCATGCTGACCA 57.292 42.857 0.00 0.00 0.00 4.02
235 236 4.937620 TGTAAACTGATCTTCATGCTGACC 59.062 41.667 0.00 0.00 0.00 4.02
236 237 6.486253 TTGTAAACTGATCTTCATGCTGAC 57.514 37.500 0.00 0.00 0.00 3.51
237 238 5.122869 GCTTGTAAACTGATCTTCATGCTGA 59.877 40.000 0.00 0.00 0.00 4.26
238 239 5.123502 AGCTTGTAAACTGATCTTCATGCTG 59.876 40.000 0.00 0.00 35.87 4.41
239 240 5.251764 AGCTTGTAAACTGATCTTCATGCT 58.748 37.500 0.00 0.00 33.65 3.79
240 241 5.557891 AGCTTGTAAACTGATCTTCATGC 57.442 39.130 0.00 0.00 0.00 4.06
265 266 8.575589 TGCACATGAGATTAACTACAACAATTT 58.424 29.630 0.00 0.00 0.00 1.82
266 267 8.109705 TGCACATGAGATTAACTACAACAATT 57.890 30.769 0.00 0.00 0.00 2.32
267 268 7.686438 TGCACATGAGATTAACTACAACAAT 57.314 32.000 0.00 0.00 0.00 2.71
268 269 7.686438 ATGCACATGAGATTAACTACAACAA 57.314 32.000 0.00 0.00 0.00 2.83
269 270 7.174772 ACAATGCACATGAGATTAACTACAACA 59.825 33.333 0.00 0.00 0.00 3.33
270 271 7.530010 ACAATGCACATGAGATTAACTACAAC 58.470 34.615 0.00 0.00 0.00 3.32
271 272 7.686438 ACAATGCACATGAGATTAACTACAA 57.314 32.000 0.00 0.00 0.00 2.41
272 273 8.962884 ATACAATGCACATGAGATTAACTACA 57.037 30.769 0.00 0.00 0.00 2.74
273 274 9.655769 CAATACAATGCACATGAGATTAACTAC 57.344 33.333 0.00 0.00 0.00 2.73
274 275 9.394767 ACAATACAATGCACATGAGATTAACTA 57.605 29.630 0.00 0.00 0.00 2.24
275 276 8.284945 ACAATACAATGCACATGAGATTAACT 57.715 30.769 0.00 0.00 0.00 2.24
276 277 9.655769 CTACAATACAATGCACATGAGATTAAC 57.344 33.333 0.00 0.00 0.00 2.01
277 278 9.394767 ACTACAATACAATGCACATGAGATTAA 57.605 29.630 0.00 0.00 0.00 1.40
278 279 8.962884 ACTACAATACAATGCACATGAGATTA 57.037 30.769 0.00 0.00 0.00 1.75
279 280 7.870509 ACTACAATACAATGCACATGAGATT 57.129 32.000 0.00 4.87 0.00 2.40
280 281 7.870509 AACTACAATACAATGCACATGAGAT 57.129 32.000 0.00 0.00 0.00 2.75
281 282 8.785329 TTAACTACAATACAATGCACATGAGA 57.215 30.769 0.00 0.00 0.00 3.27
282 283 9.838975 TTTTAACTACAATACAATGCACATGAG 57.161 29.630 0.00 0.00 0.00 2.90
298 299 9.841295 GAGGGGTCAACATATATTTTAACTACA 57.159 33.333 0.00 0.00 0.00 2.74
301 302 7.998964 CCAGAGGGGTCAACATATATTTTAACT 59.001 37.037 0.00 0.00 0.00 2.24
302 303 7.996644 TCCAGAGGGGTCAACATATATTTTAAC 59.003 37.037 0.00 0.00 38.11 2.01
303 304 8.108378 TCCAGAGGGGTCAACATATATTTTAA 57.892 34.615 0.00 0.00 38.11 1.52
304 305 7.699709 TCCAGAGGGGTCAACATATATTTTA 57.300 36.000 0.00 0.00 38.11 1.52
305 306 6.590656 TCCAGAGGGGTCAACATATATTTT 57.409 37.500 0.00 0.00 38.11 1.82
306 307 6.103205 ACATCCAGAGGGGTCAACATATATTT 59.897 38.462 0.00 0.00 38.11 1.40
307 308 5.612688 ACATCCAGAGGGGTCAACATATATT 59.387 40.000 0.00 0.00 38.11 1.28
308 309 5.165652 ACATCCAGAGGGGTCAACATATAT 58.834 41.667 0.00 0.00 38.11 0.86
309 310 4.566837 ACATCCAGAGGGGTCAACATATA 58.433 43.478 0.00 0.00 38.11 0.86
310 311 3.397527 ACATCCAGAGGGGTCAACATAT 58.602 45.455 0.00 0.00 38.11 1.78
311 312 2.845659 ACATCCAGAGGGGTCAACATA 58.154 47.619 0.00 0.00 38.11 2.29
312 313 1.673767 ACATCCAGAGGGGTCAACAT 58.326 50.000 0.00 0.00 38.11 2.71
313 314 1.073763 CAACATCCAGAGGGGTCAACA 59.926 52.381 0.00 0.00 38.11 3.33
314 315 1.614317 CCAACATCCAGAGGGGTCAAC 60.614 57.143 0.00 0.00 38.11 3.18
315 316 0.698238 CCAACATCCAGAGGGGTCAA 59.302 55.000 0.00 0.00 38.11 3.18
316 317 0.475632 ACCAACATCCAGAGGGGTCA 60.476 55.000 0.00 0.00 38.11 4.02
317 318 0.698818 AACCAACATCCAGAGGGGTC 59.301 55.000 0.00 0.00 38.11 4.46
318 319 0.405585 CAACCAACATCCAGAGGGGT 59.594 55.000 0.00 0.00 38.11 4.95
319 320 0.698238 TCAACCAACATCCAGAGGGG 59.302 55.000 0.00 0.00 38.37 4.79
320 321 2.814805 ATCAACCAACATCCAGAGGG 57.185 50.000 0.00 0.00 0.00 4.30
321 322 6.588719 TTTTAATCAACCAACATCCAGAGG 57.411 37.500 0.00 0.00 0.00 3.69
324 325 9.927668 ACTAATTTTTAATCAACCAACATCCAG 57.072 29.630 0.00 0.00 0.00 3.86
325 326 9.703892 CACTAATTTTTAATCAACCAACATCCA 57.296 29.630 0.00 0.00 0.00 3.41
326 327 9.921637 TCACTAATTTTTAATCAACCAACATCC 57.078 29.630 0.00 0.00 0.00 3.51
365 366 8.963725 GGGTAATACTTTGGTAAATTACAAGCT 58.036 33.333 5.45 0.00 30.77 3.74
366 367 8.963725 AGGGTAATACTTTGGTAAATTACAAGC 58.036 33.333 5.45 0.00 30.77 4.01
368 369 8.741841 GCAGGGTAATACTTTGGTAAATTACAA 58.258 33.333 5.45 0.00 30.77 2.41
369 370 7.889073 TGCAGGGTAATACTTTGGTAAATTACA 59.111 33.333 5.45 0.00 30.77 2.41
370 371 8.283699 TGCAGGGTAATACTTTGGTAAATTAC 57.716 34.615 0.00 0.00 0.00 1.89
371 372 9.482175 AATGCAGGGTAATACTTTGGTAAATTA 57.518 29.630 0.00 0.00 0.00 1.40
372 373 7.971368 ATGCAGGGTAATACTTTGGTAAATT 57.029 32.000 0.00 0.00 0.00 1.82
373 374 7.971368 AATGCAGGGTAATACTTTGGTAAAT 57.029 32.000 0.00 0.00 0.00 1.40
374 375 7.784470 AAATGCAGGGTAATACTTTGGTAAA 57.216 32.000 0.00 0.00 0.00 2.01
375 376 7.784470 AAAATGCAGGGTAATACTTTGGTAA 57.216 32.000 0.00 0.00 0.00 2.85
376 377 7.784470 AAAAATGCAGGGTAATACTTTGGTA 57.216 32.000 0.00 0.00 0.00 3.25
377 378 6.680148 AAAAATGCAGGGTAATACTTTGGT 57.320 33.333 0.00 0.00 0.00 3.67
404 405 9.313118 GCACCCTATTTCAAATAAATACTTTGG 57.687 33.333 0.00 0.00 34.95 3.28
405 406 9.313118 GGCACCCTATTTCAAATAAATACTTTG 57.687 33.333 0.00 0.00 35.41 2.77
406 407 9.267071 AGGCACCCTATTTCAAATAAATACTTT 57.733 29.630 0.00 0.00 28.47 2.66
407 408 8.838649 AGGCACCCTATTTCAAATAAATACTT 57.161 30.769 0.00 0.00 28.47 2.24
408 409 9.574516 CTAGGCACCCTATTTCAAATAAATACT 57.425 33.333 0.00 0.00 35.36 2.12
409 410 8.793592 CCTAGGCACCCTATTTCAAATAAATAC 58.206 37.037 0.00 0.00 35.36 1.89
410 411 8.507761 ACCTAGGCACCCTATTTCAAATAAATA 58.492 33.333 9.30 0.00 35.36 1.40
411 412 7.287696 CACCTAGGCACCCTATTTCAAATAAAT 59.712 37.037 9.30 0.00 35.36 1.40
412 413 6.605594 CACCTAGGCACCCTATTTCAAATAAA 59.394 38.462 9.30 0.00 35.36 1.40
413 414 6.126409 CACCTAGGCACCCTATTTCAAATAA 58.874 40.000 9.30 0.00 35.36 1.40
414 415 5.690865 CACCTAGGCACCCTATTTCAAATA 58.309 41.667 9.30 0.00 35.36 1.40
415 416 4.536765 CACCTAGGCACCCTATTTCAAAT 58.463 43.478 9.30 0.00 35.36 2.32
416 417 3.876156 GCACCTAGGCACCCTATTTCAAA 60.876 47.826 9.30 0.00 35.36 2.69
417 418 2.356741 GCACCTAGGCACCCTATTTCAA 60.357 50.000 9.30 0.00 35.36 2.69
418 419 1.211949 GCACCTAGGCACCCTATTTCA 59.788 52.381 9.30 0.00 35.36 2.69
419 420 1.477014 GGCACCTAGGCACCCTATTTC 60.477 57.143 9.30 0.00 43.51 2.17
420 421 0.551396 GGCACCTAGGCACCCTATTT 59.449 55.000 9.30 0.00 43.51 1.40
421 422 2.231642 GGCACCTAGGCACCCTATT 58.768 57.895 9.30 0.00 43.51 1.73
422 423 3.987638 GGCACCTAGGCACCCTAT 58.012 61.111 9.30 0.00 43.51 2.57
435 436 2.908688 AAAATGGTGAACAAGGGCAC 57.091 45.000 0.00 0.00 0.00 5.01
452 453 5.749109 CGGCACAACAAACCTATTACAAAAA 59.251 36.000 0.00 0.00 0.00 1.94
453 454 5.282510 CGGCACAACAAACCTATTACAAAA 58.717 37.500 0.00 0.00 0.00 2.44
454 455 4.261656 CCGGCACAACAAACCTATTACAAA 60.262 41.667 0.00 0.00 0.00 2.83
455 456 3.253677 CCGGCACAACAAACCTATTACAA 59.746 43.478 0.00 0.00 0.00 2.41
456 457 2.814919 CCGGCACAACAAACCTATTACA 59.185 45.455 0.00 0.00 0.00 2.41
457 458 2.414957 GCCGGCACAACAAACCTATTAC 60.415 50.000 24.80 0.00 0.00 1.89
458 459 1.813786 GCCGGCACAACAAACCTATTA 59.186 47.619 24.80 0.00 0.00 0.98
459 460 0.601057 GCCGGCACAACAAACCTATT 59.399 50.000 24.80 0.00 0.00 1.73
460 461 0.538516 TGCCGGCACAACAAACCTAT 60.539 50.000 29.03 0.00 0.00 2.57
461 462 0.538516 ATGCCGGCACAACAAACCTA 60.539 50.000 35.50 3.63 0.00 3.08
462 463 1.805428 GATGCCGGCACAACAAACCT 61.805 55.000 35.50 13.21 0.00 3.50
463 464 1.372872 GATGCCGGCACAACAAACC 60.373 57.895 35.50 9.60 0.00 3.27
464 465 0.878416 TAGATGCCGGCACAACAAAC 59.122 50.000 35.50 16.36 0.00 2.93
465 466 1.164411 CTAGATGCCGGCACAACAAA 58.836 50.000 35.50 16.32 0.00 2.83
466 467 0.323302 TCTAGATGCCGGCACAACAA 59.677 50.000 35.50 15.32 0.00 2.83
467 468 0.108186 CTCTAGATGCCGGCACAACA 60.108 55.000 35.50 16.44 0.00 3.33
468 469 0.811616 CCTCTAGATGCCGGCACAAC 60.812 60.000 35.50 25.14 0.00 3.32
469 470 1.264749 ACCTCTAGATGCCGGCACAA 61.265 55.000 35.50 19.19 0.00 3.33
470 471 0.396556 TACCTCTAGATGCCGGCACA 60.397 55.000 35.50 19.24 0.00 4.57
471 472 0.315568 CTACCTCTAGATGCCGGCAC 59.684 60.000 35.50 24.96 0.00 5.01
472 473 1.464376 GCTACCTCTAGATGCCGGCA 61.464 60.000 34.80 34.80 0.00 5.69
473 474 1.290639 GCTACCTCTAGATGCCGGC 59.709 63.158 22.73 22.73 0.00 6.13
474 475 1.261480 ATGCTACCTCTAGATGCCGG 58.739 55.000 0.00 0.00 0.00 6.13
475 476 3.508012 AGTAATGCTACCTCTAGATGCCG 59.492 47.826 0.00 0.00 0.00 5.69
476 477 5.066968 GAGTAATGCTACCTCTAGATGCC 57.933 47.826 0.00 0.00 0.00 4.40
825 826 4.325472 GGTGGAAAATGAAGTACGTAGTCG 59.675 45.833 2.79 0.00 43.93 4.18
826 827 4.628766 GGGTGGAAAATGAAGTACGTAGTC 59.371 45.833 2.79 1.28 43.93 2.59
828 829 4.571919 TGGGTGGAAAATGAAGTACGTAG 58.428 43.478 0.00 0.00 0.00 3.51
829 830 4.620589 TGGGTGGAAAATGAAGTACGTA 57.379 40.909 0.00 0.00 0.00 3.57
830 831 3.495434 TGGGTGGAAAATGAAGTACGT 57.505 42.857 0.00 0.00 0.00 3.57
831 832 4.517453 TCTTTGGGTGGAAAATGAAGTACG 59.483 41.667 0.00 0.00 0.00 3.67
832 833 6.399639 TTCTTTGGGTGGAAAATGAAGTAC 57.600 37.500 0.00 0.00 0.00 2.73
833 834 7.418483 CCTTTTCTTTGGGTGGAAAATGAAGTA 60.418 37.037 0.00 0.00 39.60 2.24
834 835 5.948742 TTTCTTTGGGTGGAAAATGAAGT 57.051 34.783 0.00 0.00 0.00 3.01
835 836 5.759763 CCTTTTCTTTGGGTGGAAAATGAAG 59.240 40.000 0.00 0.00 39.60 3.02
836 837 5.426833 TCCTTTTCTTTGGGTGGAAAATGAA 59.573 36.000 0.00 0.00 39.60 2.57
837 838 4.965532 TCCTTTTCTTTGGGTGGAAAATGA 59.034 37.500 0.00 0.00 39.60 2.57
838 839 5.289083 TCCTTTTCTTTGGGTGGAAAATG 57.711 39.130 0.00 0.00 39.60 2.32
839 840 7.625498 TTATCCTTTTCTTTGGGTGGAAAAT 57.375 32.000 0.00 0.00 39.60 1.82
840 841 7.439108 TTTATCCTTTTCTTTGGGTGGAAAA 57.561 32.000 0.00 0.00 38.55 2.29
841 842 7.625498 ATTTATCCTTTTCTTTGGGTGGAAA 57.375 32.000 0.00 0.00 0.00 3.13
842 843 7.953493 AGTATTTATCCTTTTCTTTGGGTGGAA 59.047 33.333 0.00 0.00 0.00 3.53
843 844 7.396055 CAGTATTTATCCTTTTCTTTGGGTGGA 59.604 37.037 0.00 0.00 0.00 4.02
844 845 7.178451 ACAGTATTTATCCTTTTCTTTGGGTGG 59.822 37.037 0.00 0.00 0.00 4.61
845 846 8.122472 ACAGTATTTATCCTTTTCTTTGGGTG 57.878 34.615 0.00 0.00 0.00 4.61
846 847 8.721133 AACAGTATTTATCCTTTTCTTTGGGT 57.279 30.769 0.00 0.00 0.00 4.51
862 863 7.709613 CGGCCTAATGAAGTAGTAACAGTATTT 59.290 37.037 0.00 0.00 0.00 1.40
863 864 7.208080 CGGCCTAATGAAGTAGTAACAGTATT 58.792 38.462 0.00 0.00 0.00 1.89
1189 1201 0.028902 GTTTCGTGGCTGGTGTTGTC 59.971 55.000 0.00 0.00 0.00 3.18
1199 1211 3.703286 ACCTTAGTTTTGTTTCGTGGC 57.297 42.857 0.00 0.00 0.00 5.01
1249 1261 5.645929 TGTATCGCCTTAATGTGACATTTGT 59.354 36.000 16.75 0.00 0.00 2.83
1395 1412 4.688021 GACTCCATACTGGTCAAGATCAC 58.312 47.826 0.00 0.00 39.03 3.06
1550 1572 2.360852 AATGCTCGCAGCCAGCTT 60.361 55.556 13.59 3.97 41.51 3.74
1664 1686 4.268884 CGGAAAGAAGAGATTTCGGATGTC 59.731 45.833 0.00 0.00 38.53 3.06
1693 1715 4.018050 AGCCTTAGAGGTTTTGGATGTGAT 60.018 41.667 0.00 0.00 37.80 3.06
1702 1724 2.354203 CGAGCAGAGCCTTAGAGGTTTT 60.354 50.000 0.00 0.00 37.80 2.43
1726 3088 8.257306 CAGTGCCCATACTAATTTTAAAACCAT 58.743 33.333 1.97 0.00 0.00 3.55
1732 3094 8.499406 AGATACCAGTGCCCATACTAATTTTAA 58.501 33.333 0.00 0.00 0.00 1.52
1743 3105 1.974236 GAGCTAGATACCAGTGCCCAT 59.026 52.381 0.00 0.00 0.00 4.00
1747 3109 3.118956 ACAACTGAGCTAGATACCAGTGC 60.119 47.826 3.37 0.00 39.52 4.40
1751 3113 4.526650 TGTTCACAACTGAGCTAGATACCA 59.473 41.667 0.00 0.00 0.00 3.25
1765 3127 3.357166 TGCCGGTATTTTGTTCACAAC 57.643 42.857 1.90 0.00 35.28 3.32
1768 3130 2.094752 AGCATGCCGGTATTTTGTTCAC 60.095 45.455 15.66 0.00 0.00 3.18
1774 3136 6.868622 TGTAAAATTAGCATGCCGGTATTTT 58.131 32.000 15.66 20.14 34.35 1.82
1875 3243 1.458398 TAATCAATGCACGTGGGTGG 58.542 50.000 18.88 0.00 44.54 4.61
1876 3244 5.451908 GATATTAATCAATGCACGTGGGTG 58.548 41.667 18.88 0.00 38.36 4.61
1877 3245 4.518970 GGATATTAATCAATGCACGTGGGT 59.481 41.667 18.88 0.00 33.41 4.51
1878 3246 4.518590 TGGATATTAATCAATGCACGTGGG 59.481 41.667 18.88 0.00 33.41 4.61
1909 3291 3.283751 TCACCTTGACGACAAATTTGGT 58.716 40.909 21.74 11.06 35.49 3.67
1977 3359 2.219458 TCACGATCCGATAGTGTCTCC 58.781 52.381 17.89 0.00 37.22 3.71
1987 3369 0.384309 GCACATACCTCACGATCCGA 59.616 55.000 0.00 0.00 0.00 4.55
2029 3420 4.715297 ACTGATCACTATAAGGGAAACGGT 59.285 41.667 0.00 0.00 27.39 4.83
2101 3504 0.667993 TCGCTTCCAAAACAAGCTGG 59.332 50.000 3.14 0.00 43.57 4.85
2177 3580 1.239296 TGCTGCAGCTTGGATGACAC 61.239 55.000 36.61 6.43 42.66 3.67
2252 3665 5.683681 TCATTTGAGAGCCATATAAGCACA 58.316 37.500 1.44 0.00 0.00 4.57
2417 3830 0.603569 CCTAGCGACAACTGAGGTGT 59.396 55.000 1.07 1.07 0.00 4.16
2555 5243 5.614324 TGGATATAATATTCCGCCTCCAG 57.386 43.478 0.00 0.00 34.58 3.86
2700 5388 6.122850 TCGATTCTGGATTGCATAAAGTTG 57.877 37.500 0.00 0.00 0.00 3.16
2713 5401 6.709018 TGTATCAACTGTATCGATTCTGGA 57.291 37.500 1.71 0.00 0.00 3.86
2839 5560 6.317642 CCCATCATTGTCATGCATTGATTTTT 59.682 34.615 17.33 3.96 42.29 1.94
2840 5561 5.820423 CCCATCATTGTCATGCATTGATTTT 59.180 36.000 17.33 4.20 42.29 1.82
2895 5616 1.097547 CAGCCAATCTAAGCCCGTGG 61.098 60.000 0.00 0.00 0.00 4.94
2997 5724 7.927092 GGATTAACTGACTTAGGGTTGTATCTC 59.073 40.741 0.00 0.00 0.00 2.75
3001 5728 8.669055 TTAGGATTAACTGACTTAGGGTTGTA 57.331 34.615 0.00 0.00 0.00 2.41
3024 5751 5.644206 TCTTATGTGCAACGCTGGTTAATTA 59.356 36.000 0.00 0.00 42.39 1.40
3025 5752 4.457603 TCTTATGTGCAACGCTGGTTAATT 59.542 37.500 0.00 0.00 42.39 1.40
3026 5753 4.006989 TCTTATGTGCAACGCTGGTTAAT 58.993 39.130 0.00 0.00 42.39 1.40
3027 5754 3.403968 TCTTATGTGCAACGCTGGTTAA 58.596 40.909 0.00 0.00 42.39 2.01
3078 5806 7.033185 AGTCATTAGTTGCGTTTGTTTTCTTT 58.967 30.769 0.00 0.00 0.00 2.52
3180 6657 7.128234 TCCATGACAGTTGATGAATAGATCA 57.872 36.000 0.00 0.00 43.67 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.