Multiple sequence alignment - TraesCS3B01G040500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G040500 chr3B 100.000 2114 0 0 1 2114 20004512 20002399 0.000000e+00 3904.0
1 TraesCS3B01G040500 chr3B 99.355 465 3 0 4 468 20017294 20016830 0.000000e+00 843.0
2 TraesCS3B01G040500 chr3B 80.183 873 153 13 1246 2110 20051590 20050730 8.230000e-179 636.0
3 TraesCS3B01G040500 chr3B 86.207 87 7 3 1697 1781 20024396 20024313 2.890000e-14 89.8
4 TraesCS3B01G040500 chr3B 82.796 93 14 1 1689 1781 19983847 19983757 4.830000e-12 82.4
5 TraesCS3B01G040500 chr3D 93.841 1656 85 12 469 2110 13606112 13604460 0.000000e+00 2477.0
6 TraesCS3B01G040500 chr3D 79.679 871 146 18 1246 2110 13661325 13660480 1.080000e-167 599.0
7 TraesCS3B01G040500 chr3D 72.800 375 64 18 1508 1877 13632320 13631979 2.230000e-15 93.5
8 TraesCS3B01G040500 chr3A 94.252 1618 63 7 469 2074 23314626 23316225 0.000000e+00 2446.0
9 TraesCS3B01G040500 chr3A 79.688 192 36 2 1591 1781 23375842 23376031 3.660000e-28 135.0
10 TraesCS3B01G040500 chr3A 82.796 93 10 6 1689 1780 23366282 23366369 6.250000e-11 78.7
11 TraesCS3B01G040500 chr3A 94.118 51 2 1 2065 2114 23319631 23319681 2.250000e-10 76.8
12 TraesCS3B01G040500 chr4B 99.360 469 2 1 1 468 663022038 663021570 0.000000e+00 848.0
13 TraesCS3B01G040500 chr1A 99.149 470 4 0 1 470 588918814 588918345 0.000000e+00 846.0
14 TraesCS3B01G040500 chr2B 99.149 470 3 1 1 469 635042603 635043072 0.000000e+00 845.0
15 TraesCS3B01G040500 chr7B 99.356 466 2 1 1 465 330442148 330442613 0.000000e+00 843.0
16 TraesCS3B01G040500 chr7B 98.941 472 4 1 1 471 677282425 677281954 0.000000e+00 843.0
17 TraesCS3B01G040500 chr7B 99.145 468 4 0 1 468 682141648 682142115 0.000000e+00 843.0
18 TraesCS3B01G040500 chr7B 89.256 363 22 9 897 1244 262234053 262234413 2.490000e-119 438.0
19 TraesCS3B01G040500 chr7B 89.636 357 19 10 903 1244 386362868 386362515 2.490000e-119 438.0
20 TraesCS3B01G040500 chr4A 99.147 469 3 1 1 468 4462744 4462276 0.000000e+00 843.0
21 TraesCS3B01G040500 chr4A 99.147 469 3 1 1 468 740985604 740985136 0.000000e+00 843.0
22 TraesCS3B01G040500 chr5D 89.532 363 21 9 897 1244 554200942 554201302 5.350000e-121 444.0
23 TraesCS3B01G040500 chr5D 89.636 357 19 10 903 1244 554200397 554200044 2.490000e-119 438.0
24 TraesCS3B01G040500 chr1D 89.256 363 23 9 897 1244 394179512 394179873 6.920000e-120 440.0
25 TraesCS3B01G040500 chr6D 89.636 357 20 9 903 1244 431403611 431403257 2.490000e-119 438.0
26 TraesCS3B01G040500 chr2A 89.227 362 22 10 897 1244 335826879 335827237 8.960000e-119 436.0
27 TraesCS3B01G040500 chr2D 100.000 37 0 0 1798 1834 78704930 78704966 3.760000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G040500 chr3B 20002399 20004512 2113 True 3904.0 3904 100.000 1 2114 1 chr3B.!!$R2 2113
1 TraesCS3B01G040500 chr3B 20050730 20051590 860 True 636.0 636 80.183 1246 2110 1 chr3B.!!$R5 864
2 TraesCS3B01G040500 chr3D 13604460 13606112 1652 True 2477.0 2477 93.841 469 2110 1 chr3D.!!$R1 1641
3 TraesCS3B01G040500 chr3D 13660480 13661325 845 True 599.0 599 79.679 1246 2110 1 chr3D.!!$R3 864
4 TraesCS3B01G040500 chr3A 23314626 23319681 5055 False 1261.4 2446 94.185 469 2114 2 chr3A.!!$F3 1645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
309 310 0.034896 AGTTTCGGTGCTTGATCGGT 59.965 50.0 0.0 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1404 1421 0.546122 AGCTGGACTGTTTCACCACA 59.454 50.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.302559 CCCCCTTGGCTCCTTTATATAC 57.697 50.000 0.00 0.00 0.00 1.47
33 34 3.655777 CCCCCTTGGCTCCTTTATATACA 59.344 47.826 0.00 0.00 0.00 2.29
34 35 4.263506 CCCCCTTGGCTCCTTTATATACAG 60.264 50.000 0.00 0.00 0.00 2.74
35 36 4.597507 CCCCTTGGCTCCTTTATATACAGA 59.402 45.833 0.00 0.00 0.00 3.41
36 37 5.280215 CCCCTTGGCTCCTTTATATACAGAG 60.280 48.000 0.00 0.00 0.00 3.35
37 38 5.280215 CCCTTGGCTCCTTTATATACAGAGG 60.280 48.000 0.00 0.00 0.00 3.69
38 39 4.891992 TGGCTCCTTTATATACAGAGGC 57.108 45.455 16.57 16.57 46.93 4.70
39 40 4.891992 GGCTCCTTTATATACAGAGGCA 57.108 45.455 17.72 3.24 46.26 4.75
40 41 4.826556 GGCTCCTTTATATACAGAGGCAG 58.173 47.826 17.72 10.23 46.26 4.85
41 42 4.323104 GGCTCCTTTATATACAGAGGCAGG 60.323 50.000 17.72 0.00 46.26 4.85
42 43 4.323104 GCTCCTTTATATACAGAGGCAGGG 60.323 50.000 0.00 0.00 0.00 4.45
43 44 4.168101 TCCTTTATATACAGAGGCAGGGG 58.832 47.826 0.00 0.00 0.00 4.79
44 45 3.307762 CCTTTATATACAGAGGCAGGGGC 60.308 52.174 0.00 0.00 40.13 5.80
45 46 2.713828 TATATACAGAGGCAGGGGCA 57.286 50.000 0.00 0.00 43.71 5.36
46 47 1.059913 ATATACAGAGGCAGGGGCAC 58.940 55.000 0.00 0.00 43.71 5.01
62 63 2.572290 GGCACCTCTAAACACACAAGT 58.428 47.619 0.00 0.00 0.00 3.16
63 64 2.949644 GGCACCTCTAAACACACAAGTT 59.050 45.455 0.00 0.00 0.00 2.66
64 65 4.131596 GGCACCTCTAAACACACAAGTTA 58.868 43.478 0.00 0.00 0.00 2.24
65 66 4.577283 GGCACCTCTAAACACACAAGTTAA 59.423 41.667 0.00 0.00 0.00 2.01
66 67 5.505159 GGCACCTCTAAACACACAAGTTAAC 60.505 44.000 0.00 0.00 0.00 2.01
67 68 5.065474 GCACCTCTAAACACACAAGTTAACA 59.935 40.000 8.61 0.00 0.00 2.41
68 69 6.483687 CACCTCTAAACACACAAGTTAACAC 58.516 40.000 8.61 0.00 0.00 3.32
69 70 6.092944 CACCTCTAAACACACAAGTTAACACA 59.907 38.462 8.61 0.00 0.00 3.72
70 71 6.655848 ACCTCTAAACACACAAGTTAACACAA 59.344 34.615 8.61 0.00 0.00 3.33
71 72 7.148306 ACCTCTAAACACACAAGTTAACACAAG 60.148 37.037 8.61 0.00 0.00 3.16
72 73 7.148306 CCTCTAAACACACAAGTTAACACAAGT 60.148 37.037 8.61 0.00 0.00 3.16
73 74 8.101654 TCTAAACACACAAGTTAACACAAGTT 57.898 30.769 8.61 2.32 41.74 2.66
74 75 8.018520 TCTAAACACACAAGTTAACACAAGTTG 58.981 33.333 8.61 0.00 38.69 3.16
75 76 5.950758 ACACACAAGTTAACACAAGTTGA 57.049 34.783 10.54 0.00 38.69 3.18
76 77 6.509418 ACACACAAGTTAACACAAGTTGAT 57.491 33.333 10.54 0.00 38.69 2.57
77 78 6.551736 ACACACAAGTTAACACAAGTTGATC 58.448 36.000 10.54 0.00 38.69 2.92
78 79 5.971202 CACACAAGTTAACACAAGTTGATCC 59.029 40.000 10.54 0.00 38.69 3.36
79 80 5.650266 ACACAAGTTAACACAAGTTGATCCA 59.350 36.000 10.54 0.00 38.69 3.41
80 81 5.971202 CACAAGTTAACACAAGTTGATCCAC 59.029 40.000 10.54 0.00 38.69 4.02
81 82 5.204833 CAAGTTAACACAAGTTGATCCACG 58.795 41.667 10.54 0.00 38.69 4.94
82 83 4.448210 AGTTAACACAAGTTGATCCACGT 58.552 39.130 10.54 0.00 38.69 4.49
83 84 4.272504 AGTTAACACAAGTTGATCCACGTG 59.727 41.667 10.54 9.08 38.69 4.49
84 85 2.613026 ACACAAGTTGATCCACGTGA 57.387 45.000 19.30 3.36 31.33 4.35
85 86 3.126001 ACACAAGTTGATCCACGTGAT 57.874 42.857 19.30 8.71 36.01 3.06
93 94 2.802787 GATCCACGTGATCGATTCCT 57.197 50.000 19.30 0.00 40.53 3.36
94 95 3.099267 GATCCACGTGATCGATTCCTT 57.901 47.619 19.30 0.00 40.53 3.36
95 96 4.238761 GATCCACGTGATCGATTCCTTA 57.761 45.455 19.30 0.00 40.53 2.69
96 97 3.710326 TCCACGTGATCGATTCCTTAG 57.290 47.619 19.30 0.00 40.62 2.18
97 98 2.128035 CCACGTGATCGATTCCTTAGC 58.872 52.381 19.30 0.00 40.62 3.09
98 99 2.128035 CACGTGATCGATTCCTTAGCC 58.872 52.381 10.90 0.00 40.62 3.93
99 100 1.269102 ACGTGATCGATTCCTTAGCCG 60.269 52.381 0.00 0.00 40.62 5.52
100 101 1.269102 CGTGATCGATTCCTTAGCCGT 60.269 52.381 0.00 0.00 39.71 5.68
101 102 2.128035 GTGATCGATTCCTTAGCCGTG 58.872 52.381 0.00 0.00 0.00 4.94
102 103 1.754803 TGATCGATTCCTTAGCCGTGT 59.245 47.619 0.00 0.00 0.00 4.49
103 104 2.128035 GATCGATTCCTTAGCCGTGTG 58.872 52.381 0.00 0.00 0.00 3.82
104 105 0.459585 TCGATTCCTTAGCCGTGTGC 60.460 55.000 0.00 0.00 41.71 4.57
123 124 3.738481 GTGCCCCCTGCCACCATA 61.738 66.667 0.00 0.00 40.16 2.74
124 125 2.699554 TGCCCCCTGCCACCATAT 60.700 61.111 0.00 0.00 40.16 1.78
125 126 2.323758 TGCCCCCTGCCACCATATT 61.324 57.895 0.00 0.00 40.16 1.28
126 127 1.531602 GCCCCCTGCCACCATATTC 60.532 63.158 0.00 0.00 0.00 1.75
127 128 1.153756 CCCCCTGCCACCATATTCC 59.846 63.158 0.00 0.00 0.00 3.01
128 129 1.363530 CCCCCTGCCACCATATTCCT 61.364 60.000 0.00 0.00 0.00 3.36
129 130 0.111253 CCCCTGCCACCATATTCCTC 59.889 60.000 0.00 0.00 0.00 3.71
130 131 0.250467 CCCTGCCACCATATTCCTCG 60.250 60.000 0.00 0.00 0.00 4.63
131 132 0.758734 CCTGCCACCATATTCCTCGA 59.241 55.000 0.00 0.00 0.00 4.04
132 133 1.349026 CCTGCCACCATATTCCTCGAT 59.651 52.381 0.00 0.00 0.00 3.59
133 134 2.567169 CCTGCCACCATATTCCTCGATA 59.433 50.000 0.00 0.00 0.00 2.92
134 135 3.007940 CCTGCCACCATATTCCTCGATAA 59.992 47.826 0.00 0.00 0.00 1.75
135 136 4.323792 CCTGCCACCATATTCCTCGATAAT 60.324 45.833 0.00 0.00 0.00 1.28
136 137 5.104941 CCTGCCACCATATTCCTCGATAATA 60.105 44.000 3.60 3.60 0.00 0.98
137 138 5.730550 TGCCACCATATTCCTCGATAATAC 58.269 41.667 3.27 0.00 0.00 1.89
138 139 5.483937 TGCCACCATATTCCTCGATAATACT 59.516 40.000 3.27 0.00 0.00 2.12
139 140 5.812642 GCCACCATATTCCTCGATAATACTG 59.187 44.000 3.27 4.14 0.00 2.74
140 141 6.574465 GCCACCATATTCCTCGATAATACTGT 60.574 42.308 3.27 0.00 0.00 3.55
141 142 7.363530 GCCACCATATTCCTCGATAATACTGTA 60.364 40.741 3.27 0.00 0.00 2.74
142 143 8.191446 CCACCATATTCCTCGATAATACTGTAG 58.809 40.741 3.27 0.00 0.00 2.74
143 144 7.702772 CACCATATTCCTCGATAATACTGTAGC 59.297 40.741 3.27 0.00 0.00 3.58
144 145 6.913132 CCATATTCCTCGATAATACTGTAGCG 59.087 42.308 3.27 0.00 34.27 4.26
145 146 4.761235 TTCCTCGATAATACTGTAGCGG 57.239 45.455 0.00 0.00 33.79 5.52
146 147 4.011966 TCCTCGATAATACTGTAGCGGA 57.988 45.455 0.00 0.00 33.79 5.54
147 148 4.001652 TCCTCGATAATACTGTAGCGGAG 58.998 47.826 0.00 0.00 33.79 4.63
148 149 3.752222 CCTCGATAATACTGTAGCGGAGT 59.248 47.826 0.00 0.00 33.79 3.85
149 150 4.215827 CCTCGATAATACTGTAGCGGAGTT 59.784 45.833 0.00 0.00 33.79 3.01
150 151 5.278364 CCTCGATAATACTGTAGCGGAGTTT 60.278 44.000 0.00 0.00 33.79 2.66
151 152 6.072838 CCTCGATAATACTGTAGCGGAGTTTA 60.073 42.308 0.00 0.00 33.79 2.01
152 153 6.895898 TCGATAATACTGTAGCGGAGTTTAG 58.104 40.000 0.00 0.00 33.79 1.85
153 154 6.072838 TCGATAATACTGTAGCGGAGTTTAGG 60.073 42.308 0.00 0.00 33.79 2.69
154 155 3.729862 ATACTGTAGCGGAGTTTAGGC 57.270 47.619 0.00 0.00 0.00 3.93
155 156 0.172803 ACTGTAGCGGAGTTTAGGCG 59.827 55.000 0.00 0.00 0.00 5.52
156 157 0.454600 CTGTAGCGGAGTTTAGGCGA 59.545 55.000 0.00 0.00 0.00 5.54
157 158 0.889994 TGTAGCGGAGTTTAGGCGAA 59.110 50.000 0.00 0.00 0.00 4.70
158 159 1.135199 TGTAGCGGAGTTTAGGCGAAG 60.135 52.381 0.00 0.00 0.00 3.79
171 172 2.265739 CGAAGCCCTGCTGCTGTA 59.734 61.111 0.00 0.00 41.80 2.74
172 173 1.812922 CGAAGCCCTGCTGCTGTAG 60.813 63.158 0.00 1.57 41.80 2.74
173 174 1.298014 GAAGCCCTGCTGCTGTAGT 59.702 57.895 7.84 0.00 41.80 2.73
174 175 0.322008 GAAGCCCTGCTGCTGTAGTT 60.322 55.000 7.84 0.00 41.80 2.24
175 176 0.322008 AAGCCCTGCTGCTGTAGTTC 60.322 55.000 7.84 0.00 41.80 3.01
176 177 1.003355 GCCCTGCTGCTGTAGTTCA 60.003 57.895 7.84 0.00 0.00 3.18
177 178 0.393537 GCCCTGCTGCTGTAGTTCAT 60.394 55.000 7.84 0.00 0.00 2.57
178 179 1.661341 CCCTGCTGCTGTAGTTCATC 58.339 55.000 7.84 0.00 0.00 2.92
179 180 1.065926 CCCTGCTGCTGTAGTTCATCA 60.066 52.381 7.84 0.00 0.00 3.07
180 181 2.616256 CCCTGCTGCTGTAGTTCATCAA 60.616 50.000 7.84 0.00 0.00 2.57
181 182 2.676839 CCTGCTGCTGTAGTTCATCAAG 59.323 50.000 7.84 0.00 0.00 3.02
182 183 3.593096 CTGCTGCTGTAGTTCATCAAGA 58.407 45.455 0.00 0.00 0.00 3.02
183 184 4.190001 CTGCTGCTGTAGTTCATCAAGAT 58.810 43.478 0.00 0.00 0.00 2.40
184 185 4.186926 TGCTGCTGTAGTTCATCAAGATC 58.813 43.478 0.00 0.00 0.00 2.75
185 186 3.244814 GCTGCTGTAGTTCATCAAGATCG 59.755 47.826 0.00 0.00 0.00 3.69
186 187 4.428209 CTGCTGTAGTTCATCAAGATCGT 58.572 43.478 0.00 0.00 0.00 3.73
187 188 4.424626 TGCTGTAGTTCATCAAGATCGTC 58.575 43.478 0.00 0.00 0.00 4.20
188 189 4.082245 TGCTGTAGTTCATCAAGATCGTCA 60.082 41.667 0.00 0.00 0.00 4.35
189 190 4.266502 GCTGTAGTTCATCAAGATCGTCAC 59.733 45.833 0.00 0.00 0.00 3.67
190 191 4.744570 TGTAGTTCATCAAGATCGTCACC 58.255 43.478 0.00 0.00 0.00 4.02
191 192 3.961480 AGTTCATCAAGATCGTCACCA 57.039 42.857 0.00 0.00 0.00 4.17
192 193 3.589988 AGTTCATCAAGATCGTCACCAC 58.410 45.455 0.00 0.00 0.00 4.16
194 195 0.647410 CATCAAGATCGTCACCACGC 59.353 55.000 0.00 0.00 46.28 5.34
195 196 0.460284 ATCAAGATCGTCACCACGCC 60.460 55.000 0.00 0.00 46.28 5.68
196 197 2.126071 AAGATCGTCACCACGCCG 60.126 61.111 0.00 0.00 46.28 6.46
197 198 2.927580 AAGATCGTCACCACGCCGT 61.928 57.895 0.00 0.00 46.28 5.68
198 199 2.814183 AAGATCGTCACCACGCCGTC 62.814 60.000 0.00 0.00 46.28 4.79
199 200 4.771356 ATCGTCACCACGCCGTCG 62.771 66.667 0.00 0.00 46.28 5.12
213 214 3.843985 GTCGTGCTGACGGAACTC 58.156 61.111 0.00 0.00 46.11 3.01
214 215 1.286260 GTCGTGCTGACGGAACTCT 59.714 57.895 0.00 0.00 46.11 3.24
215 216 0.318784 GTCGTGCTGACGGAACTCTT 60.319 55.000 0.00 0.00 46.11 2.85
216 217 0.039437 TCGTGCTGACGGAACTCTTC 60.039 55.000 0.00 0.00 46.11 2.87
217 218 1.009389 CGTGCTGACGGAACTCTTCC 61.009 60.000 0.00 0.00 46.62 3.46
225 226 2.363297 GGAACTCTTCCCCGACACT 58.637 57.895 0.00 0.00 44.30 3.55
226 227 0.685660 GGAACTCTTCCCCGACACTT 59.314 55.000 0.00 0.00 44.30 3.16
227 228 1.071857 GGAACTCTTCCCCGACACTTT 59.928 52.381 0.00 0.00 44.30 2.66
228 229 2.143925 GAACTCTTCCCCGACACTTTG 58.856 52.381 0.00 0.00 0.00 2.77
229 230 0.250338 ACTCTTCCCCGACACTTTGC 60.250 55.000 0.00 0.00 0.00 3.68
230 231 0.035458 CTCTTCCCCGACACTTTGCT 59.965 55.000 0.00 0.00 0.00 3.91
231 232 0.250295 TCTTCCCCGACACTTTGCTG 60.250 55.000 0.00 0.00 0.00 4.41
232 233 1.228124 TTCCCCGACACTTTGCTGG 60.228 57.895 0.00 0.00 0.00 4.85
233 234 1.701031 TTCCCCGACACTTTGCTGGA 61.701 55.000 0.00 0.00 0.00 3.86
234 235 1.002134 CCCCGACACTTTGCTGGAT 60.002 57.895 0.00 0.00 0.00 3.41
235 236 1.026718 CCCCGACACTTTGCTGGATC 61.027 60.000 0.00 0.00 0.00 3.36
236 237 1.361668 CCCGACACTTTGCTGGATCG 61.362 60.000 0.00 0.00 0.00 3.69
237 238 1.361668 CCGACACTTTGCTGGATCGG 61.362 60.000 0.00 0.00 42.69 4.18
238 239 0.389817 CGACACTTTGCTGGATCGGA 60.390 55.000 0.00 0.00 0.00 4.55
239 240 1.363744 GACACTTTGCTGGATCGGAG 58.636 55.000 0.00 0.00 0.00 4.63
240 241 0.687354 ACACTTTGCTGGATCGGAGT 59.313 50.000 0.00 0.00 0.00 3.85
241 242 1.338200 ACACTTTGCTGGATCGGAGTC 60.338 52.381 0.00 0.00 0.00 3.36
242 243 0.250513 ACTTTGCTGGATCGGAGTCC 59.749 55.000 0.00 0.00 38.81 3.85
252 253 3.593794 CGGAGTCCGGGGATCGTC 61.594 72.222 24.39 0.00 44.15 4.20
253 254 2.441532 GGAGTCCGGGGATCGTCA 60.442 66.667 0.00 0.00 37.11 4.35
254 255 1.833049 GGAGTCCGGGGATCGTCAT 60.833 63.158 0.00 0.00 37.11 3.06
255 256 1.660917 GAGTCCGGGGATCGTCATC 59.339 63.158 0.00 0.00 37.11 2.92
256 257 2.131294 GAGTCCGGGGATCGTCATCG 62.131 65.000 0.00 0.00 37.11 3.84
265 266 4.765611 TCGTCATCGAGCTGAACG 57.234 55.556 0.00 0.00 41.35 3.95
266 267 1.873863 TCGTCATCGAGCTGAACGT 59.126 52.632 0.00 0.00 41.35 3.99
267 268 0.454452 TCGTCATCGAGCTGAACGTG 60.454 55.000 0.00 0.00 41.35 4.49
268 269 0.729478 CGTCATCGAGCTGAACGTGT 60.729 55.000 0.00 0.00 39.71 4.49
269 270 0.710567 GTCATCGAGCTGAACGTGTG 59.289 55.000 0.00 0.00 0.00 3.82
270 271 1.008875 TCATCGAGCTGAACGTGTGC 61.009 55.000 0.00 0.00 0.00 4.57
271 272 1.010935 CATCGAGCTGAACGTGTGCT 61.011 55.000 9.46 9.46 40.02 4.40
272 273 0.734253 ATCGAGCTGAACGTGTGCTC 60.734 55.000 20.65 20.65 46.73 4.26
273 274 3.150895 GAGCTGAACGTGTGCTCG 58.849 61.111 17.59 0.00 42.70 5.03
274 275 1.371758 GAGCTGAACGTGTGCTCGA 60.372 57.895 17.59 0.00 42.70 4.04
275 276 0.939577 GAGCTGAACGTGTGCTCGAA 60.940 55.000 17.59 0.00 42.70 3.71
276 277 1.201825 GCTGAACGTGTGCTCGAAC 59.798 57.895 0.00 0.00 34.70 3.95
277 278 1.215655 GCTGAACGTGTGCTCGAACT 61.216 55.000 0.00 0.00 34.70 3.01
278 279 0.778815 CTGAACGTGTGCTCGAACTC 59.221 55.000 0.00 0.00 34.70 3.01
279 280 0.933047 TGAACGTGTGCTCGAACTCG 60.933 55.000 9.47 9.47 41.49 4.18
280 281 1.606350 GAACGTGTGCTCGAACTCGG 61.606 60.000 14.12 0.00 40.39 4.63
281 282 2.067091 AACGTGTGCTCGAACTCGGA 62.067 55.000 14.12 0.00 40.39 4.55
282 283 1.797933 CGTGTGCTCGAACTCGGAG 60.798 63.158 2.83 2.83 40.29 4.63
283 284 1.444553 GTGTGCTCGAACTCGGAGG 60.445 63.158 10.23 0.00 40.29 4.30
284 285 1.901948 TGTGCTCGAACTCGGAGGT 60.902 57.895 10.23 1.51 40.29 3.85
285 286 1.444553 GTGCTCGAACTCGGAGGTG 60.445 63.158 10.23 0.00 40.29 4.00
286 287 2.507324 GCTCGAACTCGGAGGTGC 60.507 66.667 10.23 0.00 40.29 5.01
287 288 2.182030 CTCGAACTCGGAGGTGCC 59.818 66.667 10.23 0.00 40.29 5.01
296 297 4.180496 GGAGGTGCCGTAGTTTCG 57.820 61.111 0.00 0.00 0.00 3.46
304 305 3.204505 CCGTAGTTTCGGTGCTTGA 57.795 52.632 0.00 0.00 44.77 3.02
305 306 1.722011 CCGTAGTTTCGGTGCTTGAT 58.278 50.000 0.00 0.00 44.77 2.57
306 307 1.659098 CCGTAGTTTCGGTGCTTGATC 59.341 52.381 0.00 0.00 44.77 2.92
307 308 1.320555 CGTAGTTTCGGTGCTTGATCG 59.679 52.381 0.00 0.00 0.00 3.69
308 309 1.659098 GTAGTTTCGGTGCTTGATCGG 59.341 52.381 0.00 0.00 0.00 4.18
309 310 0.034896 AGTTTCGGTGCTTGATCGGT 59.965 50.000 0.00 0.00 0.00 4.69
310 311 0.872388 GTTTCGGTGCTTGATCGGTT 59.128 50.000 0.00 0.00 0.00 4.44
311 312 0.871722 TTTCGGTGCTTGATCGGTTG 59.128 50.000 0.00 0.00 0.00 3.77
312 313 0.953471 TTCGGTGCTTGATCGGTTGG 60.953 55.000 0.00 0.00 0.00 3.77
313 314 1.375396 CGGTGCTTGATCGGTTGGA 60.375 57.895 0.00 0.00 0.00 3.53
314 315 0.744414 CGGTGCTTGATCGGTTGGAT 60.744 55.000 0.00 0.00 38.35 3.41
322 323 2.579207 GATCGGTTGGATCGTGAAGA 57.421 50.000 0.00 0.00 42.02 2.87
323 324 2.194271 GATCGGTTGGATCGTGAAGAC 58.806 52.381 0.00 0.00 42.02 3.01
325 326 0.388134 CGGTTGGATCGTGAAGACGT 60.388 55.000 0.00 0.00 46.20 4.34
326 327 1.135603 CGGTTGGATCGTGAAGACGTA 60.136 52.381 0.00 0.00 46.20 3.57
327 328 2.257034 GGTTGGATCGTGAAGACGTAC 58.743 52.381 0.00 0.00 46.20 3.67
328 329 1.909532 GTTGGATCGTGAAGACGTACG 59.090 52.381 15.01 15.01 46.20 3.67
334 335 2.677199 TCGTGAAGACGTACGACTACT 58.323 47.619 24.41 6.98 46.20 2.57
335 336 3.059884 TCGTGAAGACGTACGACTACTT 58.940 45.455 24.41 19.15 46.20 2.24
336 337 3.121944 TCGTGAAGACGTACGACTACTTC 59.878 47.826 24.41 25.02 46.20 3.01
337 338 3.723250 CGTGAAGACGTACGACTACTTCC 60.723 52.174 24.41 18.62 42.54 3.46
338 339 3.434984 GTGAAGACGTACGACTACTTCCT 59.565 47.826 24.41 4.54 36.96 3.36
339 340 3.681897 TGAAGACGTACGACTACTTCCTC 59.318 47.826 24.41 14.21 36.96 3.71
340 341 3.608316 AGACGTACGACTACTTCCTCT 57.392 47.619 24.41 7.87 0.00 3.69
341 342 4.727507 AGACGTACGACTACTTCCTCTA 57.272 45.455 24.41 0.00 0.00 2.43
342 343 4.429108 AGACGTACGACTACTTCCTCTAC 58.571 47.826 24.41 0.00 0.00 2.59
343 344 3.182967 ACGTACGACTACTTCCTCTACG 58.817 50.000 24.41 0.00 33.44 3.51
344 345 3.182967 CGTACGACTACTTCCTCTACGT 58.817 50.000 10.44 0.00 36.52 3.57
345 346 3.241784 CGTACGACTACTTCCTCTACGTC 59.758 52.174 10.44 0.00 34.52 4.34
346 347 2.266554 ACGACTACTTCCTCTACGTCG 58.733 52.381 7.91 7.91 46.64 5.12
347 348 2.266554 CGACTACTTCCTCTACGTCGT 58.733 52.381 2.21 2.21 39.30 4.34
348 349 2.029003 CGACTACTTCCTCTACGTCGTG 59.971 54.545 8.47 0.00 39.30 4.35
349 350 2.999355 GACTACTTCCTCTACGTCGTGT 59.001 50.000 8.47 0.00 0.00 4.49
350 351 2.999355 ACTACTTCCTCTACGTCGTGTC 59.001 50.000 8.47 0.00 0.00 3.67
351 352 1.888215 ACTTCCTCTACGTCGTGTCA 58.112 50.000 8.47 0.00 0.00 3.58
352 353 2.434428 ACTTCCTCTACGTCGTGTCAT 58.566 47.619 8.47 0.00 0.00 3.06
353 354 2.419324 ACTTCCTCTACGTCGTGTCATC 59.581 50.000 8.47 0.00 0.00 2.92
354 355 1.004595 TCCTCTACGTCGTGTCATCG 58.995 55.000 8.47 0.00 0.00 3.84
355 356 0.589229 CCTCTACGTCGTGTCATCGC 60.589 60.000 8.47 0.00 0.00 4.58
356 357 0.374063 CTCTACGTCGTGTCATCGCT 59.626 55.000 8.47 0.00 0.00 4.93
357 358 0.800631 TCTACGTCGTGTCATCGCTT 59.199 50.000 8.47 0.00 0.00 4.68
358 359 1.181001 CTACGTCGTGTCATCGCTTC 58.819 55.000 8.47 0.00 0.00 3.86
359 360 0.179181 TACGTCGTGTCATCGCTTCC 60.179 55.000 8.47 0.00 0.00 3.46
360 361 2.497092 CGTCGTGTCATCGCTTCCG 61.497 63.158 0.00 0.00 0.00 4.30
361 362 2.506217 TCGTGTCATCGCTTCCGC 60.506 61.111 0.00 0.00 0.00 5.54
362 363 2.809174 CGTGTCATCGCTTCCGCA 60.809 61.111 0.00 0.00 35.30 5.69
363 364 2.792290 CGTGTCATCGCTTCCGCAG 61.792 63.158 0.00 0.00 35.30 5.18
364 365 1.738099 GTGTCATCGCTTCCGCAGT 60.738 57.895 0.00 0.00 35.30 4.40
365 366 1.446099 TGTCATCGCTTCCGCAGTC 60.446 57.895 0.00 0.00 35.30 3.51
366 367 2.202610 TCATCGCTTCCGCAGTCG 60.203 61.111 0.00 0.00 35.30 4.18
378 379 2.738521 CAGTCGGTCTGCGTTGGG 60.739 66.667 0.00 0.00 37.36 4.12
379 380 3.231736 AGTCGGTCTGCGTTGGGT 61.232 61.111 0.00 0.00 0.00 4.51
380 381 1.904865 AGTCGGTCTGCGTTGGGTA 60.905 57.895 0.00 0.00 0.00 3.69
381 382 1.735559 GTCGGTCTGCGTTGGGTAC 60.736 63.158 0.00 0.00 0.00 3.34
391 392 2.420628 CGTTGGGTACGTAGACAACA 57.579 50.000 27.80 10.51 45.14 3.33
392 393 2.053627 CGTTGGGTACGTAGACAACAC 58.946 52.381 27.80 10.85 45.14 3.32
393 394 2.287788 CGTTGGGTACGTAGACAACACT 60.288 50.000 27.80 0.00 45.14 3.55
394 395 3.311966 GTTGGGTACGTAGACAACACTC 58.688 50.000 25.61 6.41 41.95 3.51
395 396 2.867624 TGGGTACGTAGACAACACTCT 58.132 47.619 0.00 0.00 0.00 3.24
396 397 2.816087 TGGGTACGTAGACAACACTCTC 59.184 50.000 0.00 0.00 0.00 3.20
397 398 2.163211 GGGTACGTAGACAACACTCTCC 59.837 54.545 0.00 0.00 0.00 3.71
398 399 3.080319 GGTACGTAGACAACACTCTCCT 58.920 50.000 0.00 0.00 0.00 3.69
399 400 3.126686 GGTACGTAGACAACACTCTCCTC 59.873 52.174 0.00 0.00 0.00 3.71
400 401 3.143211 ACGTAGACAACACTCTCCTCT 57.857 47.619 0.00 0.00 0.00 3.69
401 402 3.075884 ACGTAGACAACACTCTCCTCTC 58.924 50.000 0.00 0.00 0.00 3.20
402 403 2.094575 CGTAGACAACACTCTCCTCTCG 59.905 54.545 0.00 0.00 0.00 4.04
403 404 2.279935 AGACAACACTCTCCTCTCGT 57.720 50.000 0.00 0.00 0.00 4.18
404 405 2.588620 AGACAACACTCTCCTCTCGTT 58.411 47.619 0.00 0.00 0.00 3.85
405 406 2.294791 AGACAACACTCTCCTCTCGTTG 59.705 50.000 0.00 0.00 42.04 4.10
406 407 1.269831 ACAACACTCTCCTCTCGTTGC 60.270 52.381 0.00 0.00 40.42 4.17
407 408 1.000283 CAACACTCTCCTCTCGTTGCT 60.000 52.381 0.00 0.00 31.53 3.91
408 409 2.201921 ACACTCTCCTCTCGTTGCTA 57.798 50.000 0.00 0.00 0.00 3.49
409 410 2.729194 ACACTCTCCTCTCGTTGCTAT 58.271 47.619 0.00 0.00 0.00 2.97
410 411 2.425312 ACACTCTCCTCTCGTTGCTATG 59.575 50.000 0.00 0.00 0.00 2.23
411 412 1.407258 ACTCTCCTCTCGTTGCTATGC 59.593 52.381 0.00 0.00 0.00 3.14
412 413 1.406898 CTCTCCTCTCGTTGCTATGCA 59.593 52.381 0.00 0.00 36.47 3.96
413 414 2.034878 TCTCCTCTCGTTGCTATGCAT 58.965 47.619 3.79 3.79 38.76 3.96
414 415 2.035193 TCTCCTCTCGTTGCTATGCATC 59.965 50.000 0.19 0.00 38.76 3.91
415 416 1.756538 TCCTCTCGTTGCTATGCATCA 59.243 47.619 0.19 0.00 38.76 3.07
416 417 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
417 418 2.543641 CTCTCGTTGCTATGCATCACA 58.456 47.619 0.19 0.00 38.76 3.58
418 419 3.129109 CTCTCGTTGCTATGCATCACAT 58.871 45.455 0.19 0.00 43.18 3.21
419 420 2.867975 TCTCGTTGCTATGCATCACATG 59.132 45.455 0.19 0.00 40.06 3.21
420 421 2.867975 CTCGTTGCTATGCATCACATGA 59.132 45.455 0.19 3.61 40.06 3.07
421 422 3.469739 TCGTTGCTATGCATCACATGAT 58.530 40.909 0.19 0.00 40.06 2.45
422 423 3.495753 TCGTTGCTATGCATCACATGATC 59.504 43.478 0.19 0.00 40.06 2.92
423 424 3.364664 CGTTGCTATGCATCACATGATCC 60.365 47.826 0.19 0.00 40.06 3.36
424 425 3.782656 TGCTATGCATCACATGATCCT 57.217 42.857 0.19 0.00 40.06 3.24
425 426 3.408634 TGCTATGCATCACATGATCCTG 58.591 45.455 0.19 0.00 40.06 3.86
426 427 3.181448 TGCTATGCATCACATGATCCTGT 60.181 43.478 0.19 0.00 40.06 4.00
427 428 3.188667 GCTATGCATCACATGATCCTGTG 59.811 47.826 21.26 21.26 46.34 3.66
428 429 2.793288 TGCATCACATGATCCTGTGT 57.207 45.000 24.67 13.23 45.40 3.72
429 430 2.361789 TGCATCACATGATCCTGTGTG 58.638 47.619 24.67 21.71 45.40 3.82
430 431 1.065102 GCATCACATGATCCTGTGTGC 59.935 52.381 26.11 26.11 45.40 4.57
431 432 1.329599 CATCACATGATCCTGTGTGCG 59.670 52.381 24.67 13.83 45.40 5.34
432 433 1.020861 TCACATGATCCTGTGTGCGC 61.021 55.000 24.67 0.00 45.40 6.09
433 434 2.102438 ACATGATCCTGTGTGCGCG 61.102 57.895 0.00 0.00 0.00 6.86
434 435 2.102438 CATGATCCTGTGTGCGCGT 61.102 57.895 8.43 0.00 0.00 6.01
435 436 0.805711 CATGATCCTGTGTGCGCGTA 60.806 55.000 8.43 0.00 0.00 4.42
436 437 0.528466 ATGATCCTGTGTGCGCGTAG 60.528 55.000 8.43 0.00 0.00 3.51
437 438 1.878522 GATCCTGTGTGCGCGTAGG 60.879 63.158 8.43 12.11 0.00 3.18
438 439 2.279502 GATCCTGTGTGCGCGTAGGA 62.280 60.000 20.38 20.38 43.01 2.94
439 440 1.884075 ATCCTGTGTGCGCGTAGGAA 61.884 55.000 21.51 9.29 42.20 3.36
440 441 1.666553 CCTGTGTGCGCGTAGGAAA 60.667 57.895 8.43 0.00 31.91 3.13
441 442 1.225376 CCTGTGTGCGCGTAGGAAAA 61.225 55.000 8.43 0.00 31.91 2.29
442 443 0.796312 CTGTGTGCGCGTAGGAAAAT 59.204 50.000 8.43 0.00 0.00 1.82
443 444 1.196808 CTGTGTGCGCGTAGGAAAATT 59.803 47.619 8.43 0.00 0.00 1.82
444 445 1.604755 TGTGTGCGCGTAGGAAAATTT 59.395 42.857 8.43 0.00 0.00 1.82
445 446 2.033550 TGTGTGCGCGTAGGAAAATTTT 59.966 40.909 8.43 2.28 0.00 1.82
446 447 2.403698 GTGTGCGCGTAGGAAAATTTTG 59.596 45.455 8.47 0.00 0.00 2.44
447 448 2.290916 TGTGCGCGTAGGAAAATTTTGA 59.709 40.909 8.47 0.00 0.00 2.69
448 449 3.243101 TGTGCGCGTAGGAAAATTTTGAA 60.243 39.130 8.47 0.00 0.00 2.69
449 450 3.731717 GTGCGCGTAGGAAAATTTTGAAA 59.268 39.130 8.47 0.00 0.00 2.69
450 451 4.384547 GTGCGCGTAGGAAAATTTTGAAAT 59.615 37.500 8.47 0.00 0.00 2.17
451 452 4.985409 TGCGCGTAGGAAAATTTTGAAATT 59.015 33.333 8.47 0.00 40.15 1.82
452 453 6.088350 GTGCGCGTAGGAAAATTTTGAAATTA 59.912 34.615 8.47 0.00 37.62 1.40
453 454 6.088350 TGCGCGTAGGAAAATTTTGAAATTAC 59.912 34.615 8.47 3.20 37.62 1.89
454 455 6.307077 GCGCGTAGGAAAATTTTGAAATTACT 59.693 34.615 8.47 0.00 37.62 2.24
455 456 7.482428 GCGCGTAGGAAAATTTTGAAATTACTA 59.518 33.333 8.47 0.00 37.62 1.82
456 457 8.782327 CGCGTAGGAAAATTTTGAAATTACTAC 58.218 33.333 8.47 17.54 37.62 2.73
464 465 9.819267 AAAATTTTGAAATTACTACGAAACCCA 57.181 25.926 1.75 0.00 37.62 4.51
465 466 9.819267 AAATTTTGAAATTACTACGAAACCCAA 57.181 25.926 2.41 0.00 37.62 4.12
466 467 8.806177 ATTTTGAAATTACTACGAAACCCAAC 57.194 30.769 0.00 0.00 0.00 3.77
467 468 6.939132 TTGAAATTACTACGAAACCCAACA 57.061 33.333 0.00 0.00 0.00 3.33
600 604 0.874390 TTTTGGTCACGCTCATCTGC 59.126 50.000 0.00 0.00 0.00 4.26
664 668 3.463533 TTACGAATGCAACATGGTTCG 57.536 42.857 14.48 14.48 46.29 3.95
898 904 5.423886 TCATGGTGATGTTTATCGTAGCAA 58.576 37.500 0.00 0.00 36.04 3.91
1010 1017 5.863397 TCGAACAAATGGAAATGATTGAAGC 59.137 36.000 0.00 0.00 0.00 3.86
1228 1238 7.148641 GCTTCGATAAGATAGAAGGAATCACA 58.851 38.462 10.18 0.00 40.82 3.58
1254 1264 8.661345 ACTCTTAGGATTTGAAAGAAAGGTAGT 58.339 33.333 0.00 0.00 0.00 2.73
1404 1421 6.426587 ACCCATGAATTATAAAGCAGTCTGT 58.573 36.000 0.93 0.00 0.00 3.41
1405 1422 6.319658 ACCCATGAATTATAAAGCAGTCTGTG 59.680 38.462 0.93 0.00 0.00 3.66
1603 1622 2.865079 TCCTCTGCCTCTTCTATACGG 58.135 52.381 0.00 0.00 0.00 4.02
1653 1672 5.208294 ACCTCTCAATCCTCAAGGTACTA 57.792 43.478 0.00 0.00 38.49 1.82
1679 1699 7.725844 AGTTTCTTCCCCCATGATTTATGATAC 59.274 37.037 0.00 0.00 39.21 2.24
1680 1700 6.778542 TCTTCCCCCATGATTTATGATACA 57.221 37.500 0.00 0.00 39.21 2.29
1702 1725 6.509656 ACAGTGTTGTCTTACGAAACTCATA 58.490 36.000 0.00 0.00 27.35 2.15
1794 1818 7.552687 AGAAAATCGCACCTATATTCAGTTTCA 59.447 33.333 0.00 0.00 0.00 2.69
1839 1866 5.879237 TGAATTCAATGCTTGGTTCGTATC 58.121 37.500 5.45 0.00 32.27 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.655777 TGTATATAAAGGAGCCAAGGGGG 59.344 47.826 0.00 0.00 40.85 5.40
12 13 4.597507 TCTGTATATAAAGGAGCCAAGGGG 59.402 45.833 0.00 0.00 37.18 4.79
13 14 5.280215 CCTCTGTATATAAAGGAGCCAAGGG 60.280 48.000 0.00 0.00 0.00 3.95
14 15 5.799213 CCTCTGTATATAAAGGAGCCAAGG 58.201 45.833 0.00 0.00 0.00 3.61
15 16 5.221722 TGCCTCTGTATATAAAGGAGCCAAG 60.222 44.000 10.73 0.00 0.00 3.61
16 17 4.658435 TGCCTCTGTATATAAAGGAGCCAA 59.342 41.667 10.73 0.00 0.00 4.52
17 18 4.231273 TGCCTCTGTATATAAAGGAGCCA 58.769 43.478 10.73 1.89 0.00 4.75
18 19 4.323104 CCTGCCTCTGTATATAAAGGAGCC 60.323 50.000 10.73 0.00 0.00 4.70
19 20 4.323104 CCCTGCCTCTGTATATAAAGGAGC 60.323 50.000 10.03 8.85 0.00 4.70
20 21 4.223923 CCCCTGCCTCTGTATATAAAGGAG 59.776 50.000 10.03 6.23 0.00 3.69
21 22 4.168101 CCCCTGCCTCTGTATATAAAGGA 58.832 47.826 10.03 0.00 0.00 3.36
22 23 3.307762 GCCCCTGCCTCTGTATATAAAGG 60.308 52.174 0.00 2.07 0.00 3.11
23 24 3.327757 TGCCCCTGCCTCTGTATATAAAG 59.672 47.826 0.00 0.00 36.33 1.85
24 25 3.072476 GTGCCCCTGCCTCTGTATATAAA 59.928 47.826 0.00 0.00 36.33 1.40
25 26 2.637872 GTGCCCCTGCCTCTGTATATAA 59.362 50.000 0.00 0.00 36.33 0.98
26 27 2.257207 GTGCCCCTGCCTCTGTATATA 58.743 52.381 0.00 0.00 36.33 0.86
27 28 1.059913 GTGCCCCTGCCTCTGTATAT 58.940 55.000 0.00 0.00 36.33 0.86
28 29 1.054406 GGTGCCCCTGCCTCTGTATA 61.054 60.000 0.00 0.00 36.33 1.47
29 30 2.378634 GGTGCCCCTGCCTCTGTAT 61.379 63.158 0.00 0.00 36.33 2.29
30 31 3.009115 GGTGCCCCTGCCTCTGTA 61.009 66.667 0.00 0.00 36.33 2.74
31 32 4.990910 AGGTGCCCCTGCCTCTGT 62.991 66.667 0.00 0.00 40.58 3.41
32 33 4.106925 GAGGTGCCCCTGCCTCTG 62.107 72.222 0.00 0.00 45.78 3.35
35 36 1.541368 TTTAGAGGTGCCCCTGCCT 60.541 57.895 0.00 0.00 42.86 4.75
36 37 1.378646 GTTTAGAGGTGCCCCTGCC 60.379 63.158 0.00 0.00 42.86 4.85
37 38 0.960861 GTGTTTAGAGGTGCCCCTGC 60.961 60.000 0.00 0.00 42.86 4.85
38 39 0.400213 TGTGTTTAGAGGTGCCCCTG 59.600 55.000 0.00 0.00 42.86 4.45
39 40 0.400594 GTGTGTTTAGAGGTGCCCCT 59.599 55.000 0.00 0.00 46.66 4.79
40 41 0.109723 TGTGTGTTTAGAGGTGCCCC 59.890 55.000 0.00 0.00 0.00 5.80
41 42 1.880027 CTTGTGTGTTTAGAGGTGCCC 59.120 52.381 0.00 0.00 0.00 5.36
42 43 2.572290 ACTTGTGTGTTTAGAGGTGCC 58.428 47.619 0.00 0.00 0.00 5.01
43 44 5.065474 TGTTAACTTGTGTGTTTAGAGGTGC 59.935 40.000 7.22 0.00 0.00 5.01
44 45 6.092944 TGTGTTAACTTGTGTGTTTAGAGGTG 59.907 38.462 7.22 0.00 0.00 4.00
45 46 6.174760 TGTGTTAACTTGTGTGTTTAGAGGT 58.825 36.000 7.22 0.00 0.00 3.85
46 47 6.671614 TGTGTTAACTTGTGTGTTTAGAGG 57.328 37.500 7.22 0.00 0.00 3.69
47 48 7.748847 ACTTGTGTTAACTTGTGTGTTTAGAG 58.251 34.615 7.22 0.00 0.00 2.43
48 49 7.675962 ACTTGTGTTAACTTGTGTGTTTAGA 57.324 32.000 7.22 0.00 0.00 2.10
49 50 8.018520 TCAACTTGTGTTAACTTGTGTGTTTAG 58.981 33.333 7.22 0.00 34.60 1.85
50 51 7.872881 TCAACTTGTGTTAACTTGTGTGTTTA 58.127 30.769 7.22 0.00 34.60 2.01
51 52 6.740110 TCAACTTGTGTTAACTTGTGTGTTT 58.260 32.000 7.22 0.00 34.60 2.83
52 53 6.320494 TCAACTTGTGTTAACTTGTGTGTT 57.680 33.333 7.22 2.50 34.60 3.32
53 54 5.950758 TCAACTTGTGTTAACTTGTGTGT 57.049 34.783 7.22 0.00 34.60 3.72
54 55 5.971202 GGATCAACTTGTGTTAACTTGTGTG 59.029 40.000 7.22 0.00 34.60 3.82
55 56 5.650266 TGGATCAACTTGTGTTAACTTGTGT 59.350 36.000 7.22 0.00 34.60 3.72
56 57 5.971202 GTGGATCAACTTGTGTTAACTTGTG 59.029 40.000 7.22 0.00 34.60 3.33
57 58 5.220777 CGTGGATCAACTTGTGTTAACTTGT 60.221 40.000 7.22 0.00 34.60 3.16
58 59 5.204833 CGTGGATCAACTTGTGTTAACTTG 58.795 41.667 7.22 2.84 34.60 3.16
59 60 4.879545 ACGTGGATCAACTTGTGTTAACTT 59.120 37.500 7.22 0.00 34.60 2.66
60 61 4.272504 CACGTGGATCAACTTGTGTTAACT 59.727 41.667 7.95 0.00 34.60 2.24
61 62 4.271533 TCACGTGGATCAACTTGTGTTAAC 59.728 41.667 17.00 0.00 34.60 2.01
62 63 4.443621 TCACGTGGATCAACTTGTGTTAA 58.556 39.130 17.00 0.00 34.60 2.01
63 64 4.061357 TCACGTGGATCAACTTGTGTTA 57.939 40.909 17.00 0.00 34.60 2.41
64 65 2.912771 TCACGTGGATCAACTTGTGTT 58.087 42.857 17.00 0.00 36.75 3.32
65 66 2.613026 TCACGTGGATCAACTTGTGT 57.387 45.000 17.00 0.00 0.00 3.72
75 76 3.553096 GCTAAGGAATCGATCACGTGGAT 60.553 47.826 17.00 7.86 40.69 3.41
76 77 2.223735 GCTAAGGAATCGATCACGTGGA 60.224 50.000 17.00 5.50 40.69 4.02
77 78 2.128035 GCTAAGGAATCGATCACGTGG 58.872 52.381 17.00 0.00 40.69 4.94
78 79 2.128035 GGCTAAGGAATCGATCACGTG 58.872 52.381 9.94 9.94 40.69 4.49
79 80 1.269102 CGGCTAAGGAATCGATCACGT 60.269 52.381 0.00 0.00 40.69 4.49
80 81 1.269102 ACGGCTAAGGAATCGATCACG 60.269 52.381 0.00 0.00 41.26 4.35
81 82 2.128035 CACGGCTAAGGAATCGATCAC 58.872 52.381 0.00 0.00 0.00 3.06
82 83 1.754803 ACACGGCTAAGGAATCGATCA 59.245 47.619 0.00 0.00 0.00 2.92
83 84 2.128035 CACACGGCTAAGGAATCGATC 58.872 52.381 0.00 0.00 0.00 3.69
84 85 1.806623 GCACACGGCTAAGGAATCGAT 60.807 52.381 0.00 0.00 40.25 3.59
85 86 0.459585 GCACACGGCTAAGGAATCGA 60.460 55.000 0.00 0.00 40.25 3.59
86 87 1.752501 CGCACACGGCTAAGGAATCG 61.753 60.000 0.00 0.00 41.67 3.34
87 88 2.006772 CGCACACGGCTAAGGAATC 58.993 57.895 0.00 0.00 41.67 2.52
88 89 4.201951 CGCACACGGCTAAGGAAT 57.798 55.556 0.00 0.00 41.67 3.01
108 109 1.531602 GAATATGGTGGCAGGGGGC 60.532 63.158 0.00 0.00 43.74 5.80
109 110 1.153756 GGAATATGGTGGCAGGGGG 59.846 63.158 0.00 0.00 0.00 5.40
110 111 0.111253 GAGGAATATGGTGGCAGGGG 59.889 60.000 0.00 0.00 0.00 4.79
111 112 0.250467 CGAGGAATATGGTGGCAGGG 60.250 60.000 0.00 0.00 0.00 4.45
112 113 0.758734 TCGAGGAATATGGTGGCAGG 59.241 55.000 0.00 0.00 0.00 4.85
113 114 2.847327 ATCGAGGAATATGGTGGCAG 57.153 50.000 0.00 0.00 0.00 4.85
114 115 4.908601 ATTATCGAGGAATATGGTGGCA 57.091 40.909 0.00 0.00 0.00 4.92
115 116 5.812642 CAGTATTATCGAGGAATATGGTGGC 59.187 44.000 5.99 0.00 0.00 5.01
116 117 6.936279 ACAGTATTATCGAGGAATATGGTGG 58.064 40.000 5.99 0.00 0.00 4.61
117 118 7.702772 GCTACAGTATTATCGAGGAATATGGTG 59.297 40.741 5.99 6.90 0.00 4.17
118 119 7.415318 CGCTACAGTATTATCGAGGAATATGGT 60.415 40.741 5.99 8.96 0.00 3.55
119 120 6.913132 CGCTACAGTATTATCGAGGAATATGG 59.087 42.308 5.99 4.82 0.00 2.74
120 121 6.913132 CCGCTACAGTATTATCGAGGAATATG 59.087 42.308 5.99 7.68 0.00 1.78
121 122 6.827251 TCCGCTACAGTATTATCGAGGAATAT 59.173 38.462 5.99 0.00 0.00 1.28
122 123 6.175471 TCCGCTACAGTATTATCGAGGAATA 58.825 40.000 0.00 0.00 0.00 1.75
123 124 5.008331 TCCGCTACAGTATTATCGAGGAAT 58.992 41.667 0.00 0.00 0.00 3.01
124 125 4.392047 TCCGCTACAGTATTATCGAGGAA 58.608 43.478 0.00 0.00 0.00 3.36
125 126 4.001652 CTCCGCTACAGTATTATCGAGGA 58.998 47.826 0.00 0.00 0.00 3.71
126 127 3.752222 ACTCCGCTACAGTATTATCGAGG 59.248 47.826 0.00 0.00 0.00 4.63
127 128 5.359716 AACTCCGCTACAGTATTATCGAG 57.640 43.478 0.00 0.00 0.00 4.04
128 129 5.762825 AAACTCCGCTACAGTATTATCGA 57.237 39.130 0.00 0.00 0.00 3.59
129 130 6.084925 CCTAAACTCCGCTACAGTATTATCG 58.915 44.000 0.00 0.00 0.00 2.92
130 131 5.862860 GCCTAAACTCCGCTACAGTATTATC 59.137 44.000 0.00 0.00 0.00 1.75
131 132 5.564259 CGCCTAAACTCCGCTACAGTATTAT 60.564 44.000 0.00 0.00 0.00 1.28
132 133 4.261322 CGCCTAAACTCCGCTACAGTATTA 60.261 45.833 0.00 0.00 0.00 0.98
133 134 3.490419 CGCCTAAACTCCGCTACAGTATT 60.490 47.826 0.00 0.00 0.00 1.89
134 135 2.034305 CGCCTAAACTCCGCTACAGTAT 59.966 50.000 0.00 0.00 0.00 2.12
135 136 1.402968 CGCCTAAACTCCGCTACAGTA 59.597 52.381 0.00 0.00 0.00 2.74
136 137 0.172803 CGCCTAAACTCCGCTACAGT 59.827 55.000 0.00 0.00 0.00 3.55
137 138 0.454600 TCGCCTAAACTCCGCTACAG 59.545 55.000 0.00 0.00 0.00 2.74
138 139 0.889994 TTCGCCTAAACTCCGCTACA 59.110 50.000 0.00 0.00 0.00 2.74
139 140 1.557651 CTTCGCCTAAACTCCGCTAC 58.442 55.000 0.00 0.00 0.00 3.58
140 141 0.179119 GCTTCGCCTAAACTCCGCTA 60.179 55.000 0.00 0.00 0.00 4.26
141 142 1.448013 GCTTCGCCTAAACTCCGCT 60.448 57.895 0.00 0.00 0.00 5.52
142 143 2.461945 GGCTTCGCCTAAACTCCGC 61.462 63.158 0.00 0.00 46.69 5.54
143 144 3.795638 GGCTTCGCCTAAACTCCG 58.204 61.111 0.00 0.00 46.69 4.63
153 154 3.958147 TACAGCAGCAGGGCTTCGC 62.958 63.158 0.00 0.00 42.71 4.70
154 155 1.812922 CTACAGCAGCAGGGCTTCG 60.813 63.158 0.00 0.00 42.71 3.79
155 156 0.322008 AACTACAGCAGCAGGGCTTC 60.322 55.000 0.00 0.00 42.71 3.86
156 157 0.322008 GAACTACAGCAGCAGGGCTT 60.322 55.000 0.00 0.00 42.71 4.35
158 159 0.393537 ATGAACTACAGCAGCAGGGC 60.394 55.000 0.00 0.00 0.00 5.19
159 160 1.065926 TGATGAACTACAGCAGCAGGG 60.066 52.381 0.00 0.00 40.09 4.45
160 161 2.391616 TGATGAACTACAGCAGCAGG 57.608 50.000 0.00 0.00 40.09 4.85
161 162 3.593096 TCTTGATGAACTACAGCAGCAG 58.407 45.455 0.00 0.00 45.64 4.24
162 163 3.683365 TCTTGATGAACTACAGCAGCA 57.317 42.857 0.00 0.00 45.64 4.41
163 164 3.244814 CGATCTTGATGAACTACAGCAGC 59.755 47.826 0.00 0.00 45.64 5.25
164 165 4.428209 ACGATCTTGATGAACTACAGCAG 58.572 43.478 0.00 0.00 45.64 4.24
165 166 4.082245 TGACGATCTTGATGAACTACAGCA 60.082 41.667 0.00 0.00 43.37 4.41
166 167 4.266502 GTGACGATCTTGATGAACTACAGC 59.733 45.833 0.00 0.00 35.25 4.40
167 168 4.800993 GGTGACGATCTTGATGAACTACAG 59.199 45.833 0.00 0.00 0.00 2.74
168 169 4.219725 TGGTGACGATCTTGATGAACTACA 59.780 41.667 0.00 0.00 0.00 2.74
169 170 4.563184 GTGGTGACGATCTTGATGAACTAC 59.437 45.833 0.00 0.00 0.00 2.73
170 171 4.744570 GTGGTGACGATCTTGATGAACTA 58.255 43.478 0.00 0.00 0.00 2.24
171 172 3.589988 GTGGTGACGATCTTGATGAACT 58.410 45.455 0.00 0.00 0.00 3.01
172 173 3.999229 GTGGTGACGATCTTGATGAAC 57.001 47.619 0.00 0.00 0.00 3.18
198 199 1.009389 GGAAGAGTTCCGTCAGCACG 61.009 60.000 0.00 0.00 46.29 5.34
199 200 2.828933 GGAAGAGTTCCGTCAGCAC 58.171 57.895 0.00 0.00 40.59 4.40
208 209 2.143925 CAAAGTGTCGGGGAAGAGTTC 58.856 52.381 0.00 0.00 0.00 3.01
209 210 1.814248 GCAAAGTGTCGGGGAAGAGTT 60.814 52.381 0.00 0.00 0.00 3.01
210 211 0.250338 GCAAAGTGTCGGGGAAGAGT 60.250 55.000 0.00 0.00 0.00 3.24
211 212 0.035458 AGCAAAGTGTCGGGGAAGAG 59.965 55.000 0.00 0.00 0.00 2.85
212 213 0.250295 CAGCAAAGTGTCGGGGAAGA 60.250 55.000 0.00 0.00 0.00 2.87
213 214 1.237285 CCAGCAAAGTGTCGGGGAAG 61.237 60.000 0.00 0.00 0.00 3.46
214 215 1.228124 CCAGCAAAGTGTCGGGGAA 60.228 57.895 0.00 0.00 0.00 3.97
215 216 1.488705 ATCCAGCAAAGTGTCGGGGA 61.489 55.000 0.00 0.00 0.00 4.81
216 217 1.002134 ATCCAGCAAAGTGTCGGGG 60.002 57.895 0.00 0.00 0.00 5.73
217 218 1.361668 CGATCCAGCAAAGTGTCGGG 61.362 60.000 0.00 0.00 0.00 5.14
218 219 1.361668 CCGATCCAGCAAAGTGTCGG 61.362 60.000 0.00 0.00 41.98 4.79
219 220 0.389817 TCCGATCCAGCAAAGTGTCG 60.390 55.000 0.00 0.00 0.00 4.35
220 221 1.338200 ACTCCGATCCAGCAAAGTGTC 60.338 52.381 0.00 0.00 0.00 3.67
221 222 0.687354 ACTCCGATCCAGCAAAGTGT 59.313 50.000 0.00 0.00 0.00 3.55
222 223 1.363744 GACTCCGATCCAGCAAAGTG 58.636 55.000 0.00 0.00 0.00 3.16
223 224 0.250513 GGACTCCGATCCAGCAAAGT 59.749 55.000 0.00 0.00 38.77 2.66
224 225 3.071580 GGACTCCGATCCAGCAAAG 57.928 57.895 0.00 0.00 38.77 2.77
236 237 1.807495 GATGACGATCCCCGGACTCC 61.807 65.000 0.73 0.00 43.93 3.85
237 238 1.660917 GATGACGATCCCCGGACTC 59.339 63.158 0.73 0.00 43.93 3.36
238 239 2.194212 CGATGACGATCCCCGGACT 61.194 63.158 0.73 0.00 43.93 3.85
239 240 2.191513 TCGATGACGATCCCCGGAC 61.192 63.158 0.73 0.00 43.81 4.79
240 241 2.193786 TCGATGACGATCCCCGGA 59.806 61.111 0.73 0.00 43.81 5.14
248 249 0.454452 CACGTTCAGCTCGATGACGA 60.454 55.000 13.59 0.00 46.56 4.20
249 250 0.729478 ACACGTTCAGCTCGATGACG 60.729 55.000 0.00 4.93 41.26 4.35
250 251 0.710567 CACACGTTCAGCTCGATGAC 59.289 55.000 0.00 0.00 0.00 3.06
251 252 1.008875 GCACACGTTCAGCTCGATGA 61.009 55.000 0.00 0.00 0.00 2.92
252 253 1.010935 AGCACACGTTCAGCTCGATG 61.011 55.000 0.00 0.07 32.05 3.84
253 254 0.734253 GAGCACACGTTCAGCTCGAT 60.734 55.000 15.26 0.00 44.37 3.59
254 255 1.371758 GAGCACACGTTCAGCTCGA 60.372 57.895 15.26 0.00 44.37 4.04
255 256 3.150895 GAGCACACGTTCAGCTCG 58.849 61.111 15.26 0.00 44.37 5.03
257 258 1.067416 TTCGAGCACACGTTCAGCT 59.933 52.632 5.90 5.90 42.17 4.24
258 259 1.201825 GTTCGAGCACACGTTCAGC 59.798 57.895 0.00 0.00 34.70 4.26
259 260 0.778815 GAGTTCGAGCACACGTTCAG 59.221 55.000 1.01 0.00 34.70 3.02
260 261 0.933047 CGAGTTCGAGCACACGTTCA 60.933 55.000 1.01 0.00 43.02 3.18
261 262 1.606350 CCGAGTTCGAGCACACGTTC 61.606 60.000 1.01 0.00 43.02 3.95
262 263 1.660575 CCGAGTTCGAGCACACGTT 60.661 57.895 1.01 0.00 43.02 3.99
263 264 2.050351 CCGAGTTCGAGCACACGT 60.050 61.111 1.01 0.00 43.02 4.49
264 265 1.797933 CTCCGAGTTCGAGCACACG 60.798 63.158 1.01 0.89 43.02 4.49
265 266 1.444553 CCTCCGAGTTCGAGCACAC 60.445 63.158 1.01 0.00 43.02 3.82
266 267 1.901948 ACCTCCGAGTTCGAGCACA 60.902 57.895 1.01 0.00 43.02 4.57
267 268 1.444553 CACCTCCGAGTTCGAGCAC 60.445 63.158 1.01 0.00 43.02 4.40
268 269 2.962569 CACCTCCGAGTTCGAGCA 59.037 61.111 1.01 0.00 43.02 4.26
269 270 2.507324 GCACCTCCGAGTTCGAGC 60.507 66.667 2.59 0.00 43.02 5.03
270 271 2.182030 GGCACCTCCGAGTTCGAG 59.818 66.667 2.59 0.00 43.02 4.04
279 280 1.447314 CCGAAACTACGGCACCTCC 60.447 63.158 0.00 0.00 46.20 4.30
280 281 4.180496 CCGAAACTACGGCACCTC 57.820 61.111 0.00 0.00 46.20 3.85
287 288 1.320555 CGATCAAGCACCGAAACTACG 59.679 52.381 0.00 0.00 0.00 3.51
288 289 1.659098 CCGATCAAGCACCGAAACTAC 59.341 52.381 0.00 0.00 0.00 2.73
289 290 1.274167 ACCGATCAAGCACCGAAACTA 59.726 47.619 0.00 0.00 0.00 2.24
290 291 0.034896 ACCGATCAAGCACCGAAACT 59.965 50.000 0.00 0.00 0.00 2.66
291 292 0.872388 AACCGATCAAGCACCGAAAC 59.128 50.000 0.00 0.00 0.00 2.78
292 293 0.871722 CAACCGATCAAGCACCGAAA 59.128 50.000 0.00 0.00 0.00 3.46
293 294 0.953471 CCAACCGATCAAGCACCGAA 60.953 55.000 0.00 0.00 0.00 4.30
294 295 1.375396 CCAACCGATCAAGCACCGA 60.375 57.895 0.00 0.00 0.00 4.69
295 296 0.744414 ATCCAACCGATCAAGCACCG 60.744 55.000 0.00 0.00 0.00 4.94
296 297 1.017387 GATCCAACCGATCAAGCACC 58.983 55.000 0.00 0.00 45.92 5.01
297 298 0.652592 CGATCCAACCGATCAAGCAC 59.347 55.000 0.00 0.00 46.85 4.40
298 299 0.249120 ACGATCCAACCGATCAAGCA 59.751 50.000 0.00 0.00 46.85 3.91
299 300 0.652592 CACGATCCAACCGATCAAGC 59.347 55.000 0.00 0.00 46.85 4.01
300 301 2.293677 TCACGATCCAACCGATCAAG 57.706 50.000 0.00 0.00 46.85 3.02
301 302 2.232696 TCTTCACGATCCAACCGATCAA 59.767 45.455 0.00 0.00 46.85 2.57
302 303 1.822371 TCTTCACGATCCAACCGATCA 59.178 47.619 0.00 0.00 46.85 2.92
303 304 2.194271 GTCTTCACGATCCAACCGATC 58.806 52.381 0.00 0.00 43.58 3.69
304 305 2.295253 GTCTTCACGATCCAACCGAT 57.705 50.000 0.00 0.00 0.00 4.18
305 306 3.806591 GTCTTCACGATCCAACCGA 57.193 52.632 0.00 0.00 0.00 4.69
316 317 3.434984 AGGAAGTAGTCGTACGTCTTCAC 59.565 47.826 27.06 19.30 37.67 3.18
317 318 3.668447 AGGAAGTAGTCGTACGTCTTCA 58.332 45.455 27.06 11.79 37.67 3.02
318 319 3.932089 AGAGGAAGTAGTCGTACGTCTTC 59.068 47.826 19.61 21.62 41.24 2.87
319 320 3.936564 AGAGGAAGTAGTCGTACGTCTT 58.063 45.455 19.61 16.11 37.67 3.01
320 321 3.608316 AGAGGAAGTAGTCGTACGTCT 57.392 47.619 18.54 18.54 37.67 4.18
321 322 3.241784 CGTAGAGGAAGTAGTCGTACGTC 59.758 52.174 16.05 10.06 37.04 4.34
322 323 3.182967 CGTAGAGGAAGTAGTCGTACGT 58.817 50.000 16.05 0.00 33.97 3.57
323 324 3.182967 ACGTAGAGGAAGTAGTCGTACG 58.817 50.000 9.53 9.53 37.23 3.67
324 325 3.241784 CGACGTAGAGGAAGTAGTCGTAC 59.758 52.174 7.52 0.00 44.10 3.67
325 326 3.439293 CGACGTAGAGGAAGTAGTCGTA 58.561 50.000 7.52 0.00 44.10 3.43
326 327 2.266554 CGACGTAGAGGAAGTAGTCGT 58.733 52.381 7.52 0.00 44.10 4.34
327 328 2.994716 CGACGTAGAGGAAGTAGTCG 57.005 55.000 1.51 1.51 43.79 4.18
328 329 2.999355 ACACGACGTAGAGGAAGTAGTC 59.001 50.000 0.00 0.00 0.00 2.59
329 330 2.999355 GACACGACGTAGAGGAAGTAGT 59.001 50.000 0.00 0.00 0.00 2.73
330 331 2.998670 TGACACGACGTAGAGGAAGTAG 59.001 50.000 0.00 0.00 0.00 2.57
331 332 3.044235 TGACACGACGTAGAGGAAGTA 57.956 47.619 0.00 0.00 0.00 2.24
332 333 1.888215 TGACACGACGTAGAGGAAGT 58.112 50.000 0.00 0.00 0.00 3.01
333 334 2.537128 CGATGACACGACGTAGAGGAAG 60.537 54.545 0.00 0.00 35.09 3.46
334 335 1.395954 CGATGACACGACGTAGAGGAA 59.604 52.381 0.00 0.00 35.09 3.36
335 336 1.004595 CGATGACACGACGTAGAGGA 58.995 55.000 0.00 0.00 35.09 3.71
336 337 0.589229 GCGATGACACGACGTAGAGG 60.589 60.000 0.00 0.00 35.09 3.69
337 338 0.374063 AGCGATGACACGACGTAGAG 59.626 55.000 0.00 0.00 35.09 2.43
338 339 0.800631 AAGCGATGACACGACGTAGA 59.199 50.000 0.00 0.00 35.09 2.59
339 340 1.181001 GAAGCGATGACACGACGTAG 58.819 55.000 0.00 0.00 35.09 3.51
340 341 0.179181 GGAAGCGATGACACGACGTA 60.179 55.000 0.00 0.00 35.09 3.57
341 342 1.443872 GGAAGCGATGACACGACGT 60.444 57.895 0.00 0.00 35.09 4.34
342 343 2.497092 CGGAAGCGATGACACGACG 61.497 63.158 0.00 0.00 35.09 5.12
343 344 3.374330 CGGAAGCGATGACACGAC 58.626 61.111 0.00 0.00 35.09 4.34
362 363 1.904865 TACCCAACGCAGACCGACT 60.905 57.895 0.00 0.00 41.02 4.18
363 364 1.735559 GTACCCAACGCAGACCGAC 60.736 63.158 0.00 0.00 41.02 4.79
364 365 2.652530 GTACCCAACGCAGACCGA 59.347 61.111 0.00 0.00 41.02 4.69
365 366 2.807895 CGTACCCAACGCAGACCG 60.808 66.667 0.00 0.00 46.10 4.79
373 374 3.005155 AGAGTGTTGTCTACGTACCCAAC 59.995 47.826 18.86 18.86 38.10 3.77
374 375 3.225104 AGAGTGTTGTCTACGTACCCAA 58.775 45.455 0.00 0.00 0.00 4.12
375 376 2.816087 GAGAGTGTTGTCTACGTACCCA 59.184 50.000 0.00 0.00 0.00 4.51
376 377 2.163211 GGAGAGTGTTGTCTACGTACCC 59.837 54.545 0.00 0.00 0.00 3.69
377 378 3.080319 AGGAGAGTGTTGTCTACGTACC 58.920 50.000 0.00 0.00 31.92 3.34
378 379 4.002316 AGAGGAGAGTGTTGTCTACGTAC 58.998 47.826 0.00 0.00 31.92 3.67
379 380 4.252073 GAGAGGAGAGTGTTGTCTACGTA 58.748 47.826 0.00 0.00 31.92 3.57
380 381 3.075884 GAGAGGAGAGTGTTGTCTACGT 58.924 50.000 0.00 0.00 31.92 3.57
381 382 2.094575 CGAGAGGAGAGTGTTGTCTACG 59.905 54.545 0.00 0.00 31.92 3.51
382 383 3.075884 ACGAGAGGAGAGTGTTGTCTAC 58.924 50.000 0.00 0.00 0.00 2.59
383 384 3.420300 ACGAGAGGAGAGTGTTGTCTA 57.580 47.619 0.00 0.00 0.00 2.59
384 385 2.279935 ACGAGAGGAGAGTGTTGTCT 57.720 50.000 0.00 0.00 0.00 3.41
385 386 2.667137 CAACGAGAGGAGAGTGTTGTC 58.333 52.381 0.00 0.00 36.17 3.18
386 387 1.269831 GCAACGAGAGGAGAGTGTTGT 60.270 52.381 5.44 0.00 41.38 3.32
387 388 1.000283 AGCAACGAGAGGAGAGTGTTG 60.000 52.381 0.00 0.00 42.04 3.33
388 389 1.333177 AGCAACGAGAGGAGAGTGTT 58.667 50.000 0.00 0.00 0.00 3.32
389 390 2.201921 TAGCAACGAGAGGAGAGTGT 57.798 50.000 0.00 0.00 0.00 3.55
390 391 2.797792 GCATAGCAACGAGAGGAGAGTG 60.798 54.545 0.00 0.00 0.00 3.51
391 392 1.407258 GCATAGCAACGAGAGGAGAGT 59.593 52.381 0.00 0.00 0.00 3.24
392 393 1.406898 TGCATAGCAACGAGAGGAGAG 59.593 52.381 0.00 0.00 34.76 3.20
393 394 1.474330 TGCATAGCAACGAGAGGAGA 58.526 50.000 0.00 0.00 34.76 3.71
394 395 2.223900 TGATGCATAGCAACGAGAGGAG 60.224 50.000 0.00 0.00 43.62 3.69
395 396 1.756538 TGATGCATAGCAACGAGAGGA 59.243 47.619 0.00 0.00 43.62 3.71
396 397 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
397 398 2.543641 TGTGATGCATAGCAACGAGAG 58.456 47.619 0.00 0.00 43.62 3.20
398 399 2.671130 TGTGATGCATAGCAACGAGA 57.329 45.000 0.00 0.00 43.62 4.04
399 400 2.867975 TCATGTGATGCATAGCAACGAG 59.132 45.455 0.00 0.00 43.62 4.18
400 401 2.903798 TCATGTGATGCATAGCAACGA 58.096 42.857 0.00 0.66 43.62 3.85
401 402 3.364664 GGATCATGTGATGCATAGCAACG 60.365 47.826 0.00 0.00 43.62 4.10
402 403 3.819337 AGGATCATGTGATGCATAGCAAC 59.181 43.478 15.41 0.00 44.10 4.17
403 404 3.818773 CAGGATCATGTGATGCATAGCAA 59.181 43.478 15.41 0.00 44.10 3.91
404 405 3.181448 ACAGGATCATGTGATGCATAGCA 60.181 43.478 13.05 1.62 44.10 3.49
405 406 3.409570 ACAGGATCATGTGATGCATAGC 58.590 45.455 13.05 0.00 44.10 2.97
415 416 2.102438 CGCGCACACAGGATCATGT 61.102 57.895 7.30 7.30 0.00 3.21
416 417 0.805711 TACGCGCACACAGGATCATG 60.806 55.000 5.73 5.68 0.00 3.07
417 418 0.528466 CTACGCGCACACAGGATCAT 60.528 55.000 5.73 0.00 0.00 2.45
418 419 1.153842 CTACGCGCACACAGGATCA 60.154 57.895 5.73 0.00 0.00 2.92
419 420 1.878522 CCTACGCGCACACAGGATC 60.879 63.158 5.73 0.00 0.00 3.36
420 421 1.884075 TTCCTACGCGCACACAGGAT 61.884 55.000 5.73 0.00 37.06 3.24
421 422 2.089887 TTTCCTACGCGCACACAGGA 62.090 55.000 5.73 10.21 35.38 3.86
422 423 1.225376 TTTTCCTACGCGCACACAGG 61.225 55.000 5.73 7.76 0.00 4.00
423 424 0.796312 ATTTTCCTACGCGCACACAG 59.204 50.000 5.73 0.00 0.00 3.66
424 425 1.231221 AATTTTCCTACGCGCACACA 58.769 45.000 5.73 0.00 0.00 3.72
425 426 2.325509 AAATTTTCCTACGCGCACAC 57.674 45.000 5.73 0.00 0.00 3.82
426 427 2.290916 TCAAAATTTTCCTACGCGCACA 59.709 40.909 5.73 0.00 0.00 4.57
427 428 2.923643 TCAAAATTTTCCTACGCGCAC 58.076 42.857 5.73 0.00 0.00 5.34
428 429 3.627732 TTCAAAATTTTCCTACGCGCA 57.372 38.095 5.73 0.00 0.00 6.09
429 430 5.509605 AATTTCAAAATTTTCCTACGCGC 57.490 34.783 5.73 0.00 35.16 6.86
430 431 7.790861 AGTAATTTCAAAATTTTCCTACGCG 57.209 32.000 3.53 3.53 39.24 6.01
431 432 8.782327 CGTAGTAATTTCAAAATTTTCCTACGC 58.218 33.333 23.29 10.35 41.85 4.42
438 439 9.819267 TGGGTTTCGTAGTAATTTCAAAATTTT 57.181 25.926 6.06 0.00 39.24 1.82
439 440 9.819267 TTGGGTTTCGTAGTAATTTCAAAATTT 57.181 25.926 6.06 0.00 39.24 1.82
440 441 9.251792 GTTGGGTTTCGTAGTAATTTCAAAATT 57.748 29.630 6.04 6.04 41.24 1.82
441 442 8.414778 TGTTGGGTTTCGTAGTAATTTCAAAAT 58.585 29.630 0.00 0.00 0.00 1.82
442 443 7.701501 GTGTTGGGTTTCGTAGTAATTTCAAAA 59.298 33.333 0.00 0.00 0.00 2.44
443 444 7.067251 AGTGTTGGGTTTCGTAGTAATTTCAAA 59.933 33.333 0.00 0.00 0.00 2.69
444 445 6.543100 AGTGTTGGGTTTCGTAGTAATTTCAA 59.457 34.615 0.00 0.00 0.00 2.69
445 446 6.056884 AGTGTTGGGTTTCGTAGTAATTTCA 58.943 36.000 0.00 0.00 0.00 2.69
446 447 6.549912 AGTGTTGGGTTTCGTAGTAATTTC 57.450 37.500 0.00 0.00 0.00 2.17
447 448 6.991531 TGTAGTGTTGGGTTTCGTAGTAATTT 59.008 34.615 0.00 0.00 0.00 1.82
448 449 6.523840 TGTAGTGTTGGGTTTCGTAGTAATT 58.476 36.000 0.00 0.00 0.00 1.40
449 450 6.015180 TCTGTAGTGTTGGGTTTCGTAGTAAT 60.015 38.462 0.00 0.00 0.00 1.89
450 451 5.301551 TCTGTAGTGTTGGGTTTCGTAGTAA 59.698 40.000 0.00 0.00 0.00 2.24
451 452 4.826733 TCTGTAGTGTTGGGTTTCGTAGTA 59.173 41.667 0.00 0.00 0.00 1.82
452 453 3.638160 TCTGTAGTGTTGGGTTTCGTAGT 59.362 43.478 0.00 0.00 0.00 2.73
453 454 3.985925 GTCTGTAGTGTTGGGTTTCGTAG 59.014 47.826 0.00 0.00 0.00 3.51
454 455 3.638160 AGTCTGTAGTGTTGGGTTTCGTA 59.362 43.478 0.00 0.00 0.00 3.43
455 456 2.433239 AGTCTGTAGTGTTGGGTTTCGT 59.567 45.455 0.00 0.00 0.00 3.85
456 457 2.800544 CAGTCTGTAGTGTTGGGTTTCG 59.199 50.000 0.00 0.00 0.00 3.46
457 458 4.058817 CTCAGTCTGTAGTGTTGGGTTTC 58.941 47.826 0.00 0.00 0.00 2.78
458 459 3.744530 GCTCAGTCTGTAGTGTTGGGTTT 60.745 47.826 0.00 0.00 0.00 3.27
459 460 2.224305 GCTCAGTCTGTAGTGTTGGGTT 60.224 50.000 0.00 0.00 0.00 4.11
460 461 1.344763 GCTCAGTCTGTAGTGTTGGGT 59.655 52.381 0.00 0.00 0.00 4.51
461 462 1.620819 AGCTCAGTCTGTAGTGTTGGG 59.379 52.381 0.00 0.00 0.00 4.12
462 463 4.727507 ATAGCTCAGTCTGTAGTGTTGG 57.272 45.455 0.00 0.00 0.00 3.77
463 464 6.443934 ACTATAGCTCAGTCTGTAGTGTTG 57.556 41.667 0.00 0.00 38.84 3.33
464 465 8.215926 CTAACTATAGCTCAGTCTGTAGTGTT 57.784 38.462 0.00 1.35 39.19 3.32
465 466 7.795482 CTAACTATAGCTCAGTCTGTAGTGT 57.205 40.000 0.00 2.21 39.19 3.55
530 534 3.566210 CCCCACACCTCAACCCGT 61.566 66.667 0.00 0.00 0.00 5.28
600 604 1.134907 AGGCGATAACACCACCTTACG 60.135 52.381 0.00 0.00 0.00 3.18
664 668 2.093973 ACAGACGGATTCATGTGGACTC 60.094 50.000 0.00 0.00 0.00 3.36
898 904 8.923270 TGACCAAGAAAGAATTCCTAATTTGTT 58.077 29.630 0.65 0.00 36.12 2.83
1201 1209 7.653713 GTGATTCCTTCTATCTTATCGAAGCAA 59.346 37.037 0.00 0.00 34.33 3.91
1228 1238 8.661345 ACTACCTTTCTTTCAAATCCTAAGAGT 58.339 33.333 0.00 0.00 30.32 3.24
1404 1421 0.546122 AGCTGGACTGTTTCACCACA 59.454 50.000 0.00 0.00 0.00 4.17
1405 1422 2.543777 TAGCTGGACTGTTTCACCAC 57.456 50.000 0.00 0.00 0.00 4.16
1559 1578 4.272504 TCGACAAGTGGAGCAAACTTAAAG 59.727 41.667 0.00 0.00 35.70 1.85
1560 1579 4.193090 TCGACAAGTGGAGCAAACTTAAA 58.807 39.130 0.00 0.00 35.70 1.52
1653 1672 6.091076 TCATAAATCATGGGGGAAGAAACT 57.909 37.500 0.00 0.00 35.16 2.66
1702 1725 6.183360 CCACATATTTTGAGAATTCAGGCCAT 60.183 38.462 5.01 0.00 34.15 4.40
1994 2022 6.110707 AGGCCAATTGCTCAAGATTTAAATG 58.889 36.000 5.01 0.00 40.92 2.32
1998 2026 6.835488 AGATAAGGCCAATTGCTCAAGATTTA 59.165 34.615 5.01 0.00 40.92 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.