Multiple sequence alignment - TraesCS3B01G040100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G040100 chr3B 100.000 4607 0 0 1 4607 19397966 19393360 0.000000e+00 8508.0
1 TraesCS3B01G040100 chr3A 94.198 3533 182 11 6 3529 23640297 23643815 0.000000e+00 5367.0
2 TraesCS3B01G040100 chr3A 97.980 99 2 0 3525 3623 23643841 23643939 6.130000e-39 172.0
3 TraesCS3B01G040100 chr3A 95.098 102 5 0 4506 4607 23651161 23651262 1.330000e-35 161.0
4 TraesCS3B01G040100 chr3A 77.273 198 34 10 960 1151 8837801 8837993 6.300000e-19 106.0
5 TraesCS3B01G040100 chr3D 94.158 3526 181 14 13 3529 13428702 13425193 0.000000e+00 5347.0
6 TraesCS3B01G040100 chr3D 87.624 202 15 5 4416 4607 13423040 13422839 4.640000e-55 226.0
7 TraesCS3B01G040100 chr3D 92.523 107 6 1 3525 3629 13425167 13425061 7.980000e-33 152.0
8 TraesCS3B01G040100 chr3D 77.041 196 38 6 960 1151 640999 641191 6.300000e-19 106.0
9 TraesCS3B01G040100 chr1B 76.923 156 28 8 1004 1155 9692975 9692824 1.060000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G040100 chr3B 19393360 19397966 4606 True 8508.000000 8508 100.000 1 4607 1 chr3B.!!$R1 4606
1 TraesCS3B01G040100 chr3A 23640297 23643939 3642 False 2769.500000 5367 96.089 6 3623 2 chr3A.!!$F3 3617
2 TraesCS3B01G040100 chr3D 13422839 13428702 5863 True 1908.333333 5347 91.435 13 4607 3 chr3D.!!$R1 4594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
982 999 0.179702 CATCTGCTCTGCAAGGCCTA 59.820 55.0 5.16 0.0 38.41 3.93 F
1275 1293 0.607112 TCAAGAGTGCTGCAGAGAGG 59.393 55.0 20.43 0.0 0.00 3.69 F
2538 2556 0.107945 ATCTCCGCTCCTTGCTTGTC 60.108 55.0 0.00 0.0 40.11 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2016 2034 0.038251 TCGCGCTCTTGAATGACAGT 60.038 50.0 5.56 0.0 0.00 3.55 R
2763 2781 0.962356 CCACTGGCAGGTTGGTGATC 60.962 60.0 20.34 0.0 32.12 2.92 R
4170 5139 0.035317 TCCGAACAATGTGCTGCTCT 59.965 50.0 0.00 0.0 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 6.617371 AGAGTGGTATTTTCCCAGATACTCAT 59.383 38.462 0.00 0.00 31.13 2.90
103 104 1.066914 GACAAGAGCAAGAGACGCTG 58.933 55.000 0.00 0.00 40.63 5.18
147 148 2.559698 TTGGCGGTGAATCTTCTTGA 57.440 45.000 0.00 0.00 0.00 3.02
148 149 2.559698 TGGCGGTGAATCTTCTTGAA 57.440 45.000 0.00 0.00 0.00 2.69
149 150 3.071874 TGGCGGTGAATCTTCTTGAAT 57.928 42.857 0.00 0.00 0.00 2.57
150 151 2.749076 TGGCGGTGAATCTTCTTGAATG 59.251 45.455 0.00 0.00 0.00 2.67
213 214 5.411669 CGACCACAGCCTTAGTCTTTTATTT 59.588 40.000 0.00 0.00 0.00 1.40
297 306 3.097614 ACGTGGGCTCAGTAATCTACTT 58.902 45.455 0.00 0.00 36.76 2.24
305 314 4.551603 GCTCAGTAATCTACTTGCAATGCG 60.552 45.833 0.00 0.00 36.76 4.73
332 341 6.780031 TGGTGTTTCCTTCAATATTTCTTCCA 59.220 34.615 0.00 0.00 37.07 3.53
377 386 3.479505 TGTTTCAGTTGTTTGTGGACG 57.520 42.857 0.00 0.00 0.00 4.79
522 538 4.593597 AACGATGCTACGGTTGTAAATG 57.406 40.909 7.82 0.00 37.61 2.32
578 595 7.141100 AGATGTAAACTATTGACCGTTTTGG 57.859 36.000 0.00 0.00 46.41 3.28
640 657 1.145119 GGTCTTGAAAGGGACAAGGGT 59.855 52.381 0.00 0.00 43.11 4.34
748 765 2.597455 CACAGGATTGGTTTGGGAGTT 58.403 47.619 0.00 0.00 0.00 3.01
750 767 3.387699 CACAGGATTGGTTTGGGAGTTTT 59.612 43.478 0.00 0.00 0.00 2.43
752 769 3.006859 CAGGATTGGTTTGGGAGTTTTCC 59.993 47.826 0.00 0.00 43.23 3.13
753 770 2.969262 GGATTGGTTTGGGAGTTTTCCA 59.031 45.455 0.00 0.00 45.98 3.53
754 771 3.244078 GGATTGGTTTGGGAGTTTTCCAC 60.244 47.826 0.00 0.00 45.98 4.02
755 772 2.838637 TGGTTTGGGAGTTTTCCACT 57.161 45.000 0.00 0.00 45.98 4.00
756 773 3.955524 TGGTTTGGGAGTTTTCCACTA 57.044 42.857 0.00 0.00 45.98 2.74
777 794 8.943002 CCACTAAACCAAAGATATAAACGTTCT 58.057 33.333 0.00 0.00 0.00 3.01
782 799 6.737254 CCAAAGATATAAACGTTCTGTGGT 57.263 37.500 13.29 0.00 39.22 4.16
783 800 7.141100 CCAAAGATATAAACGTTCTGTGGTT 57.859 36.000 13.29 0.00 39.22 3.67
836 853 5.376625 ACAACTCCATTACTGAAGCAAAGA 58.623 37.500 0.00 0.00 0.00 2.52
861 878 3.076032 TGTATAGCCAGCTCCATCTAGGA 59.924 47.826 0.00 0.00 46.75 2.94
982 999 0.179702 CATCTGCTCTGCAAGGCCTA 59.820 55.000 5.16 0.00 38.41 3.93
1074 1092 1.261480 AGGATGCAGACGAGACAACT 58.739 50.000 0.00 0.00 0.00 3.16
1083 1101 3.002656 CAGACGAGACAACTGTTGCATTT 59.997 43.478 19.82 0.57 0.00 2.32
1179 1197 1.806542 CGTGAGGGGATGTTTCTGTTG 59.193 52.381 0.00 0.00 0.00 3.33
1199 1217 4.380843 TGAAAGCAATTAGGAGGGTCAA 57.619 40.909 0.00 0.00 0.00 3.18
1200 1218 4.335416 TGAAAGCAATTAGGAGGGTCAAG 58.665 43.478 0.00 0.00 0.00 3.02
1203 1221 2.041620 AGCAATTAGGAGGGTCAAGCAA 59.958 45.455 0.00 0.00 0.00 3.91
1275 1293 0.607112 TCAAGAGTGCTGCAGAGAGG 59.393 55.000 20.43 0.00 0.00 3.69
1554 1572 0.767375 ACACCTGTGCTTGGATCACT 59.233 50.000 0.00 0.00 35.58 3.41
1896 1914 1.688772 ATGCATGGGATCTGTTCTGC 58.311 50.000 0.00 0.00 0.00 4.26
1947 1965 1.808945 GACTGTCCACCAGAATTGCAG 59.191 52.381 0.00 0.00 44.49 4.41
2007 2025 2.855953 GCCGATTGCTATTGTGTGCATC 60.856 50.000 0.00 0.00 39.07 3.91
2034 2052 1.585668 CTACTGTCATTCAAGAGCGCG 59.414 52.381 0.00 0.00 0.00 6.86
2217 2235 1.896220 TGCAAAGGAAGTGGCTAGTG 58.104 50.000 0.00 0.00 0.00 2.74
2307 2325 2.457366 ACCTGACCGAACTCATCAAC 57.543 50.000 0.00 0.00 0.00 3.18
2352 2370 9.213799 GTTAAGAGGAATGAATCAGGATATGTC 57.786 37.037 0.00 0.00 0.00 3.06
2496 2514 0.679505 TCCAAAGAGGGGATATCGCG 59.320 55.000 13.09 0.00 38.24 5.87
2538 2556 0.107945 ATCTCCGCTCCTTGCTTGTC 60.108 55.000 0.00 0.00 40.11 3.18
2574 2592 2.227968 CTTTTGGCTCGCTCCGTTCG 62.228 60.000 0.00 0.00 0.00 3.95
2634 2652 4.115516 TGCAAGATAGTTCGATTGAGAGC 58.884 43.478 0.00 0.00 0.00 4.09
2727 2745 1.377725 ACGGCTGATTGGAAGGCTG 60.378 57.895 0.00 0.00 38.04 4.85
2763 2781 1.172180 TGGACGCCTGGAAAAGCAAG 61.172 55.000 0.00 0.00 0.00 4.01
2823 2841 3.366629 ACGCACCTCATCGTCACT 58.633 55.556 0.00 0.00 33.09 3.41
2862 2880 0.721718 CGATGCAGTTCGTTCCTTCC 59.278 55.000 1.50 0.00 34.46 3.46
2874 2892 3.814268 CCTTCCATTGGCGTGCCG 61.814 66.667 6.37 0.00 39.42 5.69
2901 2919 1.804396 TTGGCATGTGGTCTTTGGCG 61.804 55.000 0.00 0.00 38.65 5.69
2917 2935 1.432270 GGCGAGCCTGCAGACATTAC 61.432 60.000 17.39 0.00 36.28 1.89
2970 2988 2.636412 CCTCGGTGCTCTGGTTCGA 61.636 63.158 0.00 0.00 0.00 3.71
3003 3021 1.804372 CGCATCAGTAGAGTCCAAGGC 60.804 57.143 0.00 0.00 0.00 4.35
3012 3030 4.133796 GTCCAAGGCCGCCATTGC 62.134 66.667 13.15 0.00 0.00 3.56
3105 3123 3.832171 GTTCTGCAGCTCGACGCG 61.832 66.667 9.47 3.53 45.59 6.01
3139 3157 3.557264 CCCGTTACTCCAGAAGCTTTTCT 60.557 47.826 0.00 0.00 0.00 2.52
3153 3171 2.095718 GCTTTTCTTGCTAGGGACGTTG 60.096 50.000 0.00 0.00 0.00 4.10
3183 3201 1.073199 ACTGCCCCGGTTCTTCTTG 59.927 57.895 0.00 0.00 0.00 3.02
3185 3203 0.537371 CTGCCCCGGTTCTTCTTGTT 60.537 55.000 0.00 0.00 0.00 2.83
3186 3204 0.821711 TGCCCCGGTTCTTCTTGTTG 60.822 55.000 0.00 0.00 0.00 3.33
3216 3234 2.089980 CTGAAAAGCCTCACCATCCTG 58.910 52.381 0.00 0.00 0.00 3.86
3303 3321 1.659954 GCTCCAGCTCTACGATGCG 60.660 63.158 0.00 0.00 38.21 4.73
3309 3327 1.321743 CAGCTCTACGATGCGTTTGAC 59.678 52.381 0.00 0.00 41.54 3.18
3314 3332 1.619526 TACGATGCGTTTGACGGCAC 61.620 55.000 0.00 0.00 42.82 5.01
3330 3348 4.473520 ACCAGGATGCGCTTCCGG 62.474 66.667 32.04 32.04 40.94 5.14
3332 3350 4.161295 CAGGATGCGCTTCCGGGA 62.161 66.667 30.11 0.00 40.94 5.14
3333 3351 3.854669 AGGATGCGCTTCCGGGAG 61.855 66.667 30.11 4.95 40.94 4.30
3360 3378 2.125350 CAGAAGCTCCGGGTGCTC 60.125 66.667 22.60 15.66 40.22 4.26
3375 3393 1.148048 GCTCAAGATCTGGGGAGCC 59.852 63.158 23.69 12.28 45.31 4.70
3426 3444 3.512516 GCGATGCCCAGCTTGGTC 61.513 66.667 5.61 0.00 35.17 4.02
3432 3450 1.522580 GCCCAGCTTGGTCGATCTC 60.523 63.158 5.61 0.00 35.17 2.75
3626 3706 1.969923 GTAGATGCAGCTCCATCCTCT 59.030 52.381 14.20 0.00 41.98 3.69
3629 3709 0.759959 ATGCAGCTCCATCCTCTCTG 59.240 55.000 0.00 0.00 0.00 3.35
3630 3710 1.227615 GCAGCTCCATCCTCTCTGC 60.228 63.158 0.00 0.00 42.46 4.26
3632 3712 0.831966 CAGCTCCATCCTCTCTGCTT 59.168 55.000 0.00 0.00 0.00 3.91
3633 3713 1.122227 AGCTCCATCCTCTCTGCTTC 58.878 55.000 0.00 0.00 0.00 3.86
3634 3714 1.122227 GCTCCATCCTCTCTGCTTCT 58.878 55.000 0.00 0.00 0.00 2.85
3635 3715 1.485895 GCTCCATCCTCTCTGCTTCTT 59.514 52.381 0.00 0.00 0.00 2.52
3636 3716 2.697751 GCTCCATCCTCTCTGCTTCTTA 59.302 50.000 0.00 0.00 0.00 2.10
3637 3717 3.324556 GCTCCATCCTCTCTGCTTCTTAT 59.675 47.826 0.00 0.00 0.00 1.73
3644 3826 7.414984 CCATCCTCTCTGCTTCTTATTTGTTTC 60.415 40.741 0.00 0.00 0.00 2.78
3651 3833 8.092521 TCTGCTTCTTATTTGTTTCTTCTCTG 57.907 34.615 0.00 0.00 0.00 3.35
3657 3839 8.539770 TCTTATTTGTTTCTTCTCTGCTGTAG 57.460 34.615 0.00 0.00 0.00 2.74
3659 3841 9.424319 CTTATTTGTTTCTTCTCTGCTGTAGTA 57.576 33.333 0.00 0.00 0.00 1.82
3660 3842 7.897575 ATTTGTTTCTTCTCTGCTGTAGTAG 57.102 36.000 0.00 0.00 0.00 2.57
3661 3843 6.650427 TTGTTTCTTCTCTGCTGTAGTAGA 57.350 37.500 0.00 0.00 35.51 2.59
3662 3844 6.842437 TGTTTCTTCTCTGCTGTAGTAGAT 57.158 37.500 0.13 0.00 36.24 1.98
3667 3849 5.592282 TCTTCTCTGCTGTAGTAGATTCAGG 59.408 44.000 0.13 0.00 36.24 3.86
3668 3850 5.117406 TCTCTGCTGTAGTAGATTCAGGA 57.883 43.478 0.13 0.00 36.24 3.86
3669 3851 5.129634 TCTCTGCTGTAGTAGATTCAGGAG 58.870 45.833 6.59 6.59 44.79 3.69
3670 3852 4.861196 TCTGCTGTAGTAGATTCAGGAGT 58.139 43.478 11.32 0.00 44.15 3.85
3671 3853 6.002653 TCTGCTGTAGTAGATTCAGGAGTA 57.997 41.667 11.32 0.00 44.15 2.59
3672 3854 6.058833 TCTGCTGTAGTAGATTCAGGAGTAG 58.941 44.000 11.32 0.00 44.15 2.57
3673 3855 5.756918 TGCTGTAGTAGATTCAGGAGTAGT 58.243 41.667 0.00 0.00 0.00 2.73
3674 3856 6.896883 TGCTGTAGTAGATTCAGGAGTAGTA 58.103 40.000 0.00 0.00 0.00 1.82
3675 3857 7.519057 TGCTGTAGTAGATTCAGGAGTAGTAT 58.481 38.462 0.00 0.00 0.00 2.12
3676 3858 8.657712 TGCTGTAGTAGATTCAGGAGTAGTATA 58.342 37.037 0.00 0.00 0.00 1.47
3677 3859 8.938906 GCTGTAGTAGATTCAGGAGTAGTATAC 58.061 40.741 0.00 0.00 43.47 1.47
3709 3891 7.173218 GTCATCTGATGTAACTTGAAACCTTCA 59.827 37.037 16.66 0.00 38.04 3.02
3733 3915 6.438763 AGTTTCTATACAAACTGTGCAAAGC 58.561 36.000 2.98 0.00 43.57 3.51
3734 3916 5.371115 TTCTATACAAACTGTGCAAAGCC 57.629 39.130 2.98 0.00 0.00 4.35
3735 3917 4.651778 TCTATACAAACTGTGCAAAGCCT 58.348 39.130 2.98 0.00 0.00 4.58
3736 3918 5.070001 TCTATACAAACTGTGCAAAGCCTT 58.930 37.500 2.98 0.00 0.00 4.35
3737 3919 6.234920 TCTATACAAACTGTGCAAAGCCTTA 58.765 36.000 2.98 0.00 0.00 2.69
3738 3920 5.982890 ATACAAACTGTGCAAAGCCTTAT 57.017 34.783 2.98 0.00 0.00 1.73
3739 3921 4.670896 ACAAACTGTGCAAAGCCTTATT 57.329 36.364 2.98 0.00 0.00 1.40
3740 3922 5.022282 ACAAACTGTGCAAAGCCTTATTT 57.978 34.783 2.98 0.00 0.00 1.40
3741 3923 6.155475 ACAAACTGTGCAAAGCCTTATTTA 57.845 33.333 2.98 0.00 0.00 1.40
3742 3924 6.758254 ACAAACTGTGCAAAGCCTTATTTAT 58.242 32.000 2.98 0.00 0.00 1.40
3743 3925 6.646240 ACAAACTGTGCAAAGCCTTATTTATG 59.354 34.615 2.98 0.00 0.00 1.90
3754 3936 8.505625 CAAAGCCTTATTTATGTTTGTGCATTT 58.494 29.630 0.00 0.00 0.00 2.32
3755 3937 8.620116 AAGCCTTATTTATGTTTGTGCATTTT 57.380 26.923 0.00 0.00 0.00 1.82
3768 3950 5.982465 TGTGCATTTTAAAGTTTTCCTGC 57.018 34.783 0.00 0.00 0.00 4.85
3770 3952 4.506288 GTGCATTTTAAAGTTTTCCTGCGT 59.494 37.500 0.00 0.00 0.00 5.24
3791 3973 2.685388 TCCATGTTTGCGTTTGTCTTCA 59.315 40.909 0.00 0.00 0.00 3.02
3794 3976 4.260990 CCATGTTTGCGTTTGTCTTCACTA 60.261 41.667 0.00 0.00 0.00 2.74
3802 3985 6.837992 TGCGTTTGTCTTCACTATATTTTCC 58.162 36.000 0.00 0.00 0.00 3.13
3810 3993 9.904198 TGTCTTCACTATATTTTCCATGATCAA 57.096 29.630 0.00 0.00 0.00 2.57
3822 4005 6.593268 TTCCATGATCAAAATCAGCTTCAA 57.407 33.333 0.00 0.00 44.90 2.69
3825 4008 7.617225 TCCATGATCAAAATCAGCTTCAATTT 58.383 30.769 0.00 0.00 44.90 1.82
3826 4009 7.762615 TCCATGATCAAAATCAGCTTCAATTTC 59.237 33.333 0.00 0.00 44.90 2.17
3827 4010 7.547722 CCATGATCAAAATCAGCTTCAATTTCA 59.452 33.333 0.00 0.00 44.90 2.69
3828 4011 8.595533 CATGATCAAAATCAGCTTCAATTTCAG 58.404 33.333 0.00 0.00 44.90 3.02
3830 4013 8.145767 TGATCAAAATCAGCTTCAATTTCAGTT 58.854 29.630 0.00 0.00 36.98 3.16
3832 4015 7.267128 TCAAAATCAGCTTCAATTTCAGTTGT 58.733 30.769 0.00 0.00 0.00 3.32
3833 4016 7.223193 TCAAAATCAGCTTCAATTTCAGTTGTG 59.777 33.333 0.00 0.00 0.00 3.33
3834 4017 6.395426 AATCAGCTTCAATTTCAGTTGTGA 57.605 33.333 0.00 0.00 0.00 3.58
3836 4019 6.395426 TCAGCTTCAATTTCAGTTGTGATT 57.605 33.333 0.00 0.00 30.85 2.57
3837 4020 6.441274 TCAGCTTCAATTTCAGTTGTGATTC 58.559 36.000 0.00 0.00 30.85 2.52
3845 4045 8.729756 TCAATTTCAGTTGTGATTCGATATGTT 58.270 29.630 0.00 0.00 30.85 2.71
3851 4051 7.387673 TCAGTTGTGATTCGATATGTTTCACTT 59.612 33.333 0.00 0.00 38.00 3.16
3852 4052 8.655970 CAGTTGTGATTCGATATGTTTCACTTA 58.344 33.333 0.00 0.00 38.00 2.24
3857 4057 9.638300 GTGATTCGATATGTTTCACTTATTGTC 57.362 33.333 0.00 0.00 35.09 3.18
3859 4059 9.855361 GATTCGATATGTTTCACTTATTGTCTG 57.145 33.333 0.00 0.00 0.00 3.51
3860 4060 8.996024 TTCGATATGTTTCACTTATTGTCTGA 57.004 30.769 0.00 0.00 0.00 3.27
3861 4061 8.996024 TCGATATGTTTCACTTATTGTCTGAA 57.004 30.769 0.00 0.00 0.00 3.02
3862 4062 8.869897 TCGATATGTTTCACTTATTGTCTGAAC 58.130 33.333 0.00 0.00 0.00 3.18
3863 4063 8.873830 CGATATGTTTCACTTATTGTCTGAACT 58.126 33.333 0.00 0.00 0.00 3.01
3890 4823 3.933861 GGGGGTCACTTATGTCTGAAT 57.066 47.619 0.00 0.00 0.00 2.57
3897 4830 7.393515 GGGGTCACTTATGTCTGAATTTTAGTT 59.606 37.037 0.00 0.00 0.00 2.24
3936 4905 4.638304 TCAGTGTAGTTTGGGCTTTAGAC 58.362 43.478 0.00 0.00 0.00 2.59
3937 4906 4.347000 TCAGTGTAGTTTGGGCTTTAGACT 59.653 41.667 0.00 0.00 0.00 3.24
3938 4907 5.063880 CAGTGTAGTTTGGGCTTTAGACTT 58.936 41.667 0.00 0.00 0.00 3.01
3939 4908 5.049405 CAGTGTAGTTTGGGCTTTAGACTTG 60.049 44.000 0.00 0.00 0.00 3.16
3940 4909 4.820173 GTGTAGTTTGGGCTTTAGACTTGT 59.180 41.667 0.00 0.00 0.00 3.16
3941 4910 4.819630 TGTAGTTTGGGCTTTAGACTTGTG 59.180 41.667 0.00 0.00 0.00 3.33
3943 4912 5.043737 AGTTTGGGCTTTAGACTTGTGTA 57.956 39.130 0.00 0.00 0.00 2.90
3945 4914 4.425180 TTGGGCTTTAGACTTGTGTACA 57.575 40.909 0.00 0.00 0.00 2.90
3946 4915 4.002906 TGGGCTTTAGACTTGTGTACAG 57.997 45.455 0.00 0.00 0.00 2.74
3949 4918 4.065789 GGCTTTAGACTTGTGTACAGCTT 58.934 43.478 13.23 0.00 0.00 3.74
3950 4919 5.235516 GGCTTTAGACTTGTGTACAGCTTA 58.764 41.667 13.23 0.00 0.00 3.09
3951 4920 5.875359 GGCTTTAGACTTGTGTACAGCTTAT 59.125 40.000 13.23 0.00 0.00 1.73
3952 4921 6.371825 GGCTTTAGACTTGTGTACAGCTTATT 59.628 38.462 13.23 0.00 0.00 1.40
3954 4923 7.958025 GCTTTAGACTTGTGTACAGCTTATTTC 59.042 37.037 0.00 0.00 0.00 2.17
3955 4924 7.900782 TTAGACTTGTGTACAGCTTATTTCC 57.099 36.000 0.00 0.00 0.00 3.13
3956 4925 5.246307 AGACTTGTGTACAGCTTATTTCCC 58.754 41.667 0.00 0.00 0.00 3.97
3957 4926 5.013183 AGACTTGTGTACAGCTTATTTCCCT 59.987 40.000 0.00 0.00 0.00 4.20
3958 4927 5.631119 ACTTGTGTACAGCTTATTTCCCTT 58.369 37.500 0.00 0.00 0.00 3.95
3959 4928 5.705905 ACTTGTGTACAGCTTATTTCCCTTC 59.294 40.000 0.00 0.00 0.00 3.46
3960 4929 4.585879 TGTGTACAGCTTATTTCCCTTCC 58.414 43.478 0.00 0.00 0.00 3.46
3961 4930 4.042311 TGTGTACAGCTTATTTCCCTTCCA 59.958 41.667 0.00 0.00 0.00 3.53
3963 4932 5.007682 TGTACAGCTTATTTCCCTTCCAAC 58.992 41.667 0.00 0.00 0.00 3.77
3964 4933 4.112634 ACAGCTTATTTCCCTTCCAACA 57.887 40.909 0.00 0.00 0.00 3.33
3965 4934 3.826729 ACAGCTTATTTCCCTTCCAACAC 59.173 43.478 0.00 0.00 0.00 3.32
3966 4935 3.826157 CAGCTTATTTCCCTTCCAACACA 59.174 43.478 0.00 0.00 0.00 3.72
3967 4936 4.280677 CAGCTTATTTCCCTTCCAACACAA 59.719 41.667 0.00 0.00 0.00 3.33
3968 4937 4.898861 AGCTTATTTCCCTTCCAACACAAA 59.101 37.500 0.00 0.00 0.00 2.83
3969 4938 5.365314 AGCTTATTTCCCTTCCAACACAAAA 59.635 36.000 0.00 0.00 0.00 2.44
3970 4939 5.465390 GCTTATTTCCCTTCCAACACAAAAC 59.535 40.000 0.00 0.00 0.00 2.43
3971 4940 6.546428 TTATTTCCCTTCCAACACAAAACA 57.454 33.333 0.00 0.00 0.00 2.83
3972 4941 5.628797 ATTTCCCTTCCAACACAAAACAT 57.371 34.783 0.00 0.00 0.00 2.71
3973 4942 4.399004 TTCCCTTCCAACACAAAACATG 57.601 40.909 0.00 0.00 0.00 3.21
3974 4943 3.636679 TCCCTTCCAACACAAAACATGA 58.363 40.909 0.00 0.00 0.00 3.07
3975 4944 4.222336 TCCCTTCCAACACAAAACATGAT 58.778 39.130 0.00 0.00 0.00 2.45
3976 4945 4.653341 TCCCTTCCAACACAAAACATGATT 59.347 37.500 0.00 0.00 0.00 2.57
3977 4946 5.130145 TCCCTTCCAACACAAAACATGATTT 59.870 36.000 0.00 0.00 0.00 2.17
3978 4947 5.821995 CCCTTCCAACACAAAACATGATTTT 59.178 36.000 0.00 0.00 0.00 1.82
3988 4957 5.746539 CAAAACATGATTTTTGTTTCCCCG 58.253 37.500 0.00 0.00 44.32 5.73
3989 4958 3.038788 ACATGATTTTTGTTTCCCCGC 57.961 42.857 0.00 0.00 0.00 6.13
3991 4960 0.319125 TGATTTTTGTTTCCCCGCGC 60.319 50.000 0.00 0.00 0.00 6.86
3992 4961 1.341369 GATTTTTGTTTCCCCGCGCG 61.341 55.000 25.67 25.67 0.00 6.86
3994 4963 2.280823 TTTTTGTTTCCCCGCGCGTT 62.281 50.000 29.95 0.00 0.00 4.84
3995 4964 1.442526 TTTTGTTTCCCCGCGCGTTA 61.443 50.000 29.95 10.69 0.00 3.18
3996 4965 1.442526 TTTGTTTCCCCGCGCGTTAA 61.443 50.000 29.95 16.42 0.00 2.01
3998 4967 1.235948 TGTTTCCCCGCGCGTTAATT 61.236 50.000 29.95 0.00 0.00 1.40
3999 4968 0.726256 GTTTCCCCGCGCGTTAATTA 59.274 50.000 29.95 6.35 0.00 1.40
4001 4970 0.938713 TTCCCCGCGCGTTAATTATG 59.061 50.000 29.95 10.39 0.00 1.90
4002 4971 0.881159 TCCCCGCGCGTTAATTATGG 60.881 55.000 29.95 19.15 0.00 2.74
4003 4972 1.161563 CCCCGCGCGTTAATTATGGT 61.162 55.000 29.95 0.00 0.00 3.55
4004 4973 0.233848 CCCGCGCGTTAATTATGGTC 59.766 55.000 29.95 0.00 0.00 4.02
4005 4974 1.214367 CCGCGCGTTAATTATGGTCT 58.786 50.000 29.95 0.00 0.00 3.85
4006 4975 1.070843 CCGCGCGTTAATTATGGTCTG 60.071 52.381 29.95 3.54 0.00 3.51
4007 4976 1.070843 CGCGCGTTAATTATGGTCTGG 60.071 52.381 24.19 0.00 0.00 3.86
4008 4977 2.206750 GCGCGTTAATTATGGTCTGGA 58.793 47.619 8.43 0.00 0.00 3.86
4009 4978 2.221055 GCGCGTTAATTATGGTCTGGAG 59.779 50.000 8.43 0.00 0.00 3.86
4010 4979 2.221055 CGCGTTAATTATGGTCTGGAGC 59.779 50.000 0.00 0.00 0.00 4.70
4011 4980 3.202906 GCGTTAATTATGGTCTGGAGCA 58.797 45.455 4.95 4.95 43.48 4.26
4012 4981 3.625764 GCGTTAATTATGGTCTGGAGCAA 59.374 43.478 6.57 0.00 42.53 3.91
4014 4983 4.273480 CGTTAATTATGGTCTGGAGCAAGG 59.727 45.833 6.57 0.00 42.53 3.61
4047 5016 6.577427 GCACGAAGTTTAACCTGTAATTTCAG 59.423 38.462 5.16 5.16 41.61 3.02
4050 5019 8.985805 ACGAAGTTTAACCTGTAATTTCAGTAG 58.014 33.333 10.72 0.08 37.78 2.57
4052 5021 7.683437 AGTTTAACCTGTAATTTCAGTAGGC 57.317 36.000 10.72 0.00 34.02 3.93
4054 5023 8.599792 AGTTTAACCTGTAATTTCAGTAGGCTA 58.400 33.333 10.72 0.00 34.02 3.93
4058 5027 7.670605 ACCTGTAATTTCAGTAGGCTACATA 57.329 36.000 25.48 10.80 34.02 2.29
4059 5028 7.727181 ACCTGTAATTTCAGTAGGCTACATAG 58.273 38.462 25.48 14.88 34.02 2.23
4061 5030 8.589338 CCTGTAATTTCAGTAGGCTACATAGAT 58.411 37.037 25.48 11.08 34.02 1.98
4062 5031 9.416794 CTGTAATTTCAGTAGGCTACATAGATG 57.583 37.037 25.48 14.72 0.00 2.90
4068 5037 7.618019 TCAGTAGGCTACATAGATGGAAAAT 57.382 36.000 25.48 0.00 0.00 1.82
4070 5039 6.652481 CAGTAGGCTACATAGATGGAAAATGG 59.348 42.308 25.48 0.00 0.00 3.16
4077 5046 7.201857 GCTACATAGATGGAAAATGGCTTTTCT 60.202 37.037 16.30 6.04 46.24 2.52
4087 5056 8.087750 TGGAAAATGGCTTTTCTTATTGTACTG 58.912 33.333 16.30 0.00 46.24 2.74
4096 5065 9.860898 GCTTTTCTTATTGTACTGATTCCATTT 57.139 29.630 0.00 0.00 0.00 2.32
4105 5074 9.912634 ATTGTACTGATTCCATTTTGTTTACAG 57.087 29.630 0.00 0.00 0.00 2.74
4109 5078 7.605449 ACTGATTCCATTTTGTTTACAGGATG 58.395 34.615 0.00 0.00 46.00 3.51
4119 5088 8.463930 TTTTGTTTACAGGATGATCAGAAACT 57.536 30.769 0.09 0.00 39.69 2.66
4120 5089 7.439157 TTGTTTACAGGATGATCAGAAACTG 57.561 36.000 0.09 9.06 39.69 3.16
4121 5090 5.939883 TGTTTACAGGATGATCAGAAACTGG 59.060 40.000 17.49 1.89 39.69 4.00
4136 5105 0.706433 ACTGGAAGATGCACCCCAAT 59.294 50.000 0.00 0.00 37.43 3.16
4145 5114 1.184431 TGCACCCCAATTGCATACAG 58.816 50.000 0.00 0.00 45.06 2.74
4146 5115 1.185315 GCACCCCAATTGCATACAGT 58.815 50.000 0.00 0.00 39.93 3.55
4148 5117 2.417243 GCACCCCAATTGCATACAGTTC 60.417 50.000 0.00 0.00 39.93 3.01
4149 5118 2.166254 CACCCCAATTGCATACAGTTCC 59.834 50.000 0.00 0.00 0.00 3.62
4150 5119 2.042979 ACCCCAATTGCATACAGTTCCT 59.957 45.455 0.00 0.00 0.00 3.36
4151 5120 3.099141 CCCCAATTGCATACAGTTCCTT 58.901 45.455 0.00 0.00 0.00 3.36
4152 5121 4.264172 ACCCCAATTGCATACAGTTCCTTA 60.264 41.667 0.00 0.00 0.00 2.69
4153 5122 4.097892 CCCCAATTGCATACAGTTCCTTAC 59.902 45.833 0.00 0.00 0.00 2.34
4154 5123 4.704540 CCCAATTGCATACAGTTCCTTACA 59.295 41.667 0.00 0.00 0.00 2.41
4155 5124 5.360714 CCCAATTGCATACAGTTCCTTACAT 59.639 40.000 0.00 0.00 0.00 2.29
4156 5125 6.127366 CCCAATTGCATACAGTTCCTTACATT 60.127 38.462 0.00 0.00 0.00 2.71
4157 5126 7.322664 CCAATTGCATACAGTTCCTTACATTT 58.677 34.615 0.00 0.00 0.00 2.32
4158 5127 7.818930 CCAATTGCATACAGTTCCTTACATTTT 59.181 33.333 0.00 0.00 0.00 1.82
4160 5129 6.176975 TGCATACAGTTCCTTACATTTTCG 57.823 37.500 0.00 0.00 0.00 3.46
4161 5130 5.703592 TGCATACAGTTCCTTACATTTTCGT 59.296 36.000 0.00 0.00 0.00 3.85
4162 5131 6.021596 GCATACAGTTCCTTACATTTTCGTG 58.978 40.000 0.00 0.00 0.00 4.35
4163 5132 4.483476 ACAGTTCCTTACATTTTCGTGC 57.517 40.909 0.00 0.00 0.00 5.34
4165 5134 3.252215 CAGTTCCTTACATTTTCGTGCCA 59.748 43.478 0.00 0.00 0.00 4.92
4166 5135 4.079253 AGTTCCTTACATTTTCGTGCCAT 58.921 39.130 0.00 0.00 0.00 4.40
4167 5136 5.123186 CAGTTCCTTACATTTTCGTGCCATA 59.877 40.000 0.00 0.00 0.00 2.74
4168 5137 5.354234 AGTTCCTTACATTTTCGTGCCATAG 59.646 40.000 0.00 0.00 0.00 2.23
4169 5138 3.625764 TCCTTACATTTTCGTGCCATAGC 59.374 43.478 0.00 0.00 40.48 2.97
4178 5147 2.992164 TGCCATAGCAGAGCAGCA 59.008 55.556 0.00 0.00 46.52 4.41
4179 5148 1.450848 TGCCATAGCAGAGCAGCAC 60.451 57.895 0.00 0.00 46.52 4.40
4180 5149 1.450848 GCCATAGCAGAGCAGCACA 60.451 57.895 0.00 0.00 39.53 4.57
4181 5150 0.818445 GCCATAGCAGAGCAGCACAT 60.818 55.000 0.00 0.00 39.53 3.21
4182 5151 1.676746 CCATAGCAGAGCAGCACATT 58.323 50.000 0.00 0.00 36.85 2.71
4183 5152 1.333931 CCATAGCAGAGCAGCACATTG 59.666 52.381 0.00 0.00 36.85 2.82
4184 5153 2.014857 CATAGCAGAGCAGCACATTGT 58.985 47.619 0.00 0.00 36.85 2.71
4185 5154 2.189594 TAGCAGAGCAGCACATTGTT 57.810 45.000 0.00 0.00 36.85 2.83
4186 5155 0.879765 AGCAGAGCAGCACATTGTTC 59.120 50.000 0.00 0.00 36.85 3.18
4191 5160 1.063174 GAGCAGCACATTGTTCGGATC 59.937 52.381 0.00 0.00 0.00 3.36
4204 5173 2.521771 CGGATCGAATTTCGCGCCA 61.522 57.895 21.38 5.72 40.21 5.69
4211 5180 0.366534 GAATTTCGCGCCAACATTGC 59.633 50.000 0.00 0.00 0.00 3.56
4225 5194 7.529158 CGCCAACATTGCATATCTTATCATAA 58.471 34.615 0.00 0.00 0.00 1.90
4288 5257 6.359617 CCTTGTTTGTTTGTACTAGCATTTCG 59.640 38.462 0.00 0.00 0.00 3.46
4299 5268 5.824904 ACTAGCATTTCGCATGAGAAAAT 57.175 34.783 25.22 17.10 46.13 1.82
4301 5270 3.777478 AGCATTTCGCATGAGAAAATGG 58.223 40.909 25.22 18.53 46.13 3.16
4302 5271 3.444742 AGCATTTCGCATGAGAAAATGGA 59.555 39.130 25.22 5.89 46.13 3.41
4326 5295 5.847111 AAAAGAAGGGTTCACTGTAAACC 57.153 39.130 4.14 4.14 44.52 3.27
4331 5300 1.957668 GGTTCACTGTAAACCCGTGT 58.042 50.000 1.05 0.00 40.29 4.49
4332 5301 1.600485 GGTTCACTGTAAACCCGTGTG 59.400 52.381 1.05 0.00 40.29 3.82
4333 5302 2.553086 GTTCACTGTAAACCCGTGTGA 58.447 47.619 0.00 0.00 36.10 3.58
4334 5303 2.937799 GTTCACTGTAAACCCGTGTGAA 59.062 45.455 0.00 0.00 42.81 3.18
4336 5305 3.811083 TCACTGTAAACCCGTGTGAAAT 58.189 40.909 0.00 0.00 35.15 2.17
4337 5306 4.200874 TCACTGTAAACCCGTGTGAAATT 58.799 39.130 0.00 0.00 35.15 1.82
4338 5307 4.273969 TCACTGTAAACCCGTGTGAAATTC 59.726 41.667 0.00 0.00 35.15 2.17
4339 5308 4.035792 CACTGTAAACCCGTGTGAAATTCA 59.964 41.667 0.00 0.00 0.00 2.57
4340 5309 4.274950 ACTGTAAACCCGTGTGAAATTCAG 59.725 41.667 0.00 0.00 0.00 3.02
4341 5310 2.793278 AAACCCGTGTGAAATTCAGC 57.207 45.000 0.00 0.00 0.00 4.26
4342 5311 1.686355 AACCCGTGTGAAATTCAGCA 58.314 45.000 0.00 0.00 0.00 4.41
4343 5312 1.686355 ACCCGTGTGAAATTCAGCAA 58.314 45.000 0.00 0.00 0.00 3.91
4344 5313 1.608590 ACCCGTGTGAAATTCAGCAAG 59.391 47.619 0.00 0.82 0.00 4.01
4345 5314 1.608590 CCCGTGTGAAATTCAGCAAGT 59.391 47.619 0.00 0.00 0.00 3.16
4346 5315 2.034558 CCCGTGTGAAATTCAGCAAGTT 59.965 45.455 0.00 0.00 0.00 2.66
4347 5316 3.490761 CCCGTGTGAAATTCAGCAAGTTT 60.491 43.478 0.00 0.00 0.00 2.66
4348 5317 4.111916 CCGTGTGAAATTCAGCAAGTTTT 58.888 39.130 0.00 0.00 0.00 2.43
4349 5318 4.566360 CCGTGTGAAATTCAGCAAGTTTTT 59.434 37.500 0.00 0.00 0.00 1.94
4376 5751 5.398603 CCAAAACCATGGTAGCATTGTAA 57.601 39.130 20.12 0.00 35.65 2.41
4381 5756 2.357637 CCATGGTAGCATTGTAAACCCG 59.642 50.000 4.25 0.00 0.00 5.28
4386 5761 0.596082 AGCATTGTAAACCCGTGTGC 59.404 50.000 0.00 0.00 0.00 4.57
4391 5766 2.853731 TGTAAACCCGTGTGCAAAAG 57.146 45.000 0.00 0.00 0.00 2.27
4393 5768 1.677052 GTAAACCCGTGTGCAAAAGGA 59.323 47.619 10.87 0.00 0.00 3.36
4394 5769 1.408969 AAACCCGTGTGCAAAAGGAT 58.591 45.000 10.87 0.00 0.00 3.24
4395 5770 0.958822 AACCCGTGTGCAAAAGGATC 59.041 50.000 10.87 0.00 0.00 3.36
4416 5798 2.038659 AGCCTTTGGTAAGCTGCAAAA 58.961 42.857 1.02 0.00 0.00 2.44
4417 5799 2.036346 AGCCTTTGGTAAGCTGCAAAAG 59.964 45.455 1.02 10.07 0.00 2.27
4418 5800 2.224042 GCCTTTGGTAAGCTGCAAAAGT 60.224 45.455 13.96 0.00 0.00 2.66
4419 5801 3.383761 CCTTTGGTAAGCTGCAAAAGTG 58.616 45.455 13.96 5.62 0.00 3.16
4455 5837 7.083875 GCTTCAGCACTAAATATACCACAAA 57.916 36.000 0.00 0.00 41.59 2.83
4457 5839 8.190784 GCTTCAGCACTAAATATACCACAAATT 58.809 33.333 0.00 0.00 41.59 1.82
4489 5871 7.716998 AGACTCTTTCTGAAAATTTACAGCTCA 59.283 33.333 4.18 0.00 34.57 4.26
4516 5907 2.224018 TGTACAACTTTAAGGGCGTCGT 60.224 45.455 0.00 0.00 0.00 4.34
4518 5909 1.202557 ACAACTTTAAGGGCGTCGTGA 60.203 47.619 0.00 0.00 0.00 4.35
4534 5925 1.924524 CGTGACGTGATAATTTCGCCT 59.075 47.619 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.827727 TCTGGGAAAATACCACTCTATTAGC 58.172 40.000 0.00 0.00 33.63 3.09
1 2 9.930693 GTATCTGGGAAAATACCACTCTATTAG 57.069 37.037 0.00 0.00 33.63 1.73
2 3 9.670442 AGTATCTGGGAAAATACCACTCTATTA 57.330 33.333 0.00 0.00 33.63 0.98
3 4 8.568617 AGTATCTGGGAAAATACCACTCTATT 57.431 34.615 0.00 0.00 33.63 1.73
4 5 7.789831 TGAGTATCTGGGAAAATACCACTCTAT 59.210 37.037 0.00 0.00 32.67 1.98
7 8 6.235231 TGAGTATCTGGGAAAATACCACTC 57.765 41.667 0.00 0.00 34.92 3.51
21 22 3.400255 CTGATGTGGCCATGAGTATCTG 58.600 50.000 9.72 8.73 34.92 2.90
22 23 2.224475 GCTGATGTGGCCATGAGTATCT 60.224 50.000 9.72 0.00 35.05 1.98
44 45 1.735198 TAGGCAGCGTCGTTTTCCG 60.735 57.895 0.00 0.00 38.13 4.30
60 61 5.291128 CCTTGGTTGCTATTTACGACTGTAG 59.709 44.000 0.00 0.00 0.00 2.74
103 104 6.086785 ACGGTCAATAGTTTAGATCTAGCC 57.913 41.667 2.02 0.00 0.00 3.93
213 214 3.706600 ATACCACTTTAGGCGGAAACA 57.293 42.857 0.00 0.00 0.00 2.83
305 314 6.272822 AGAAATATTGAAGGAAACACCAGC 57.727 37.500 0.00 0.00 42.04 4.85
332 341 0.251121 TGCGATGAACCCAATGTGGT 60.251 50.000 0.00 0.00 41.55 4.16
522 538 0.459489 TTGCTGTTGTCTTGGTTGCC 59.541 50.000 0.00 0.00 0.00 4.52
578 595 4.821805 TGTCTTTCCAAGAAGATTCACCAC 59.178 41.667 0.00 0.00 39.67 4.16
640 657 1.228124 GCACACCCACTAAGCACCA 60.228 57.895 0.00 0.00 0.00 4.17
667 684 8.624776 ACAAGAAGCTTGAATATTACTATTGCC 58.375 33.333 2.10 0.00 0.00 4.52
748 765 9.287373 ACGTTTATATCTTTGGTTTAGTGGAAA 57.713 29.630 0.00 0.00 0.00 3.13
750 767 8.851541 AACGTTTATATCTTTGGTTTAGTGGA 57.148 30.769 0.00 0.00 0.00 4.02
752 769 9.755064 CAGAACGTTTATATCTTTGGTTTAGTG 57.245 33.333 0.46 0.00 0.00 2.74
753 770 9.498176 ACAGAACGTTTATATCTTTGGTTTAGT 57.502 29.630 0.46 0.00 0.00 2.24
754 771 9.755064 CACAGAACGTTTATATCTTTGGTTTAG 57.245 33.333 0.46 0.00 0.00 1.85
755 772 8.723311 CCACAGAACGTTTATATCTTTGGTTTA 58.277 33.333 0.46 0.00 36.65 2.01
756 773 7.229907 ACCACAGAACGTTTATATCTTTGGTTT 59.770 33.333 15.91 0.00 46.73 3.27
777 794 5.363580 TCATGAGTATGCTATGAGAACCACA 59.636 40.000 0.00 0.00 34.21 4.17
782 799 6.966534 TGACTCATGAGTATGCTATGAGAA 57.033 37.500 27.95 14.80 46.71 2.87
783 800 7.536159 AATGACTCATGAGTATGCTATGAGA 57.464 36.000 27.95 11.87 46.71 3.27
836 853 4.989875 AGATGGAGCTGGCTATACAAAT 57.010 40.909 0.00 0.00 0.00 2.32
861 878 1.004745 CACCCTCTAACATGGTTGCCT 59.995 52.381 0.00 0.00 0.00 4.75
862 879 1.271926 ACACCCTCTAACATGGTTGCC 60.272 52.381 0.00 0.00 0.00 4.52
863 880 2.200373 ACACCCTCTAACATGGTTGC 57.800 50.000 0.00 0.00 0.00 4.17
982 999 2.014128 CATTTCCGTACCTCGCCAAAT 58.986 47.619 0.00 0.00 38.35 2.32
988 1005 2.481449 CCTCCTTCATTTCCGTACCTCG 60.481 54.545 0.00 0.00 39.52 4.63
992 1009 2.168728 AGCTCCTCCTTCATTTCCGTAC 59.831 50.000 0.00 0.00 0.00 3.67
1074 1092 3.318557 TGATCTGCTTCACAAATGCAACA 59.681 39.130 0.00 0.00 36.22 3.33
1083 1101 1.300963 GCCCCTGATCTGCTTCACA 59.699 57.895 0.00 0.00 0.00 3.58
1179 1197 3.129462 GCTTGACCCTCCTAATTGCTTTC 59.871 47.826 0.00 0.00 0.00 2.62
1199 1217 3.009723 CGGTACCATGTCTTGATTTGCT 58.990 45.455 13.54 0.00 0.00 3.91
1200 1218 2.097466 CCGGTACCATGTCTTGATTTGC 59.903 50.000 13.54 0.00 0.00 3.68
1203 1221 1.559682 AGCCGGTACCATGTCTTGATT 59.440 47.619 13.54 0.00 0.00 2.57
1782 1800 4.695217 TGTGAAAATTATCCGACCAAGC 57.305 40.909 0.00 0.00 0.00 4.01
1896 1914 5.786311 TCATTCTTCCAAAATGCCTCTTTG 58.214 37.500 0.00 0.00 34.73 2.77
1947 1965 3.807071 CCACAAACTTGTTTGCCCAATAC 59.193 43.478 21.65 0.00 39.91 1.89
1992 2010 1.375853 GCCCGATGCACACAATAGCA 61.376 55.000 0.00 0.00 45.92 3.49
2007 2025 1.883084 GAATGACAGTAGGCGCCCG 60.883 63.158 26.15 12.31 0.00 6.13
2016 2034 0.038251 TCGCGCTCTTGAATGACAGT 60.038 50.000 5.56 0.00 0.00 3.55
2034 2052 3.771577 TTCTCCCACTCCAGAAAAGTC 57.228 47.619 0.00 0.00 0.00 3.01
2352 2370 3.562557 TGTCATGCATCTGGAAATCATCG 59.437 43.478 0.00 0.00 0.00 3.84
2445 2463 3.438360 GCGTGCTTTCCCAATAAGATTG 58.562 45.455 0.00 0.00 0.00 2.67
2496 2514 2.031163 ACGGACTCTGCAAGGTGC 59.969 61.111 0.00 0.00 45.29 5.01
2538 2556 4.470462 CAAAAGTCAGCGAATTCTGGAAG 58.530 43.478 3.52 0.00 34.91 3.46
2574 2592 6.483640 ACATTAACTGAACAGACCTTGAGAAC 59.516 38.462 8.87 0.00 0.00 3.01
2634 2652 2.414750 AAACACCTCGTTTGGCAGG 58.585 52.632 0.00 0.00 46.22 4.85
2691 2709 5.005012 CAGCCGTGAGATATTTGCAATTTTG 59.995 40.000 0.00 0.00 0.00 2.44
2763 2781 0.962356 CCACTGGCAGGTTGGTGATC 60.962 60.000 20.34 0.00 32.12 2.92
3012 3030 3.058016 TGATGGCTTTGAAGAGCTTTTCG 60.058 43.478 11.96 0.00 42.32 3.46
3069 3087 3.758088 CTCCTGGTCGTCATCCGCG 62.758 68.421 0.00 0.00 36.19 6.46
3117 3135 2.474410 AAAGCTTCTGGAGTAACGGG 57.526 50.000 0.00 0.00 0.00 5.28
3139 3157 1.344065 TTCTCCAACGTCCCTAGCAA 58.656 50.000 0.00 0.00 0.00 3.91
3153 3171 1.756430 GGGGCAGTGATTCTTTCTCC 58.244 55.000 0.00 0.00 0.00 3.71
3216 3234 2.357034 TTTGACCAGACGAGCCGC 60.357 61.111 0.00 0.00 0.00 6.53
3288 3306 0.647410 CAAACGCATCGTAGAGCTGG 59.353 55.000 0.00 0.00 43.63 4.85
3294 3312 1.343821 GCCGTCAAACGCATCGTAG 59.656 57.895 0.00 0.00 39.99 3.51
3303 3321 1.875963 CATCCTGGTGCCGTCAAAC 59.124 57.895 0.00 0.00 0.00 2.93
3323 3341 2.760387 AAACGACGTCTCCCGGAAGC 62.760 60.000 14.70 0.00 42.24 3.86
3330 3348 1.061485 GCTTCTGAAACGACGTCTCC 58.939 55.000 14.70 0.39 0.00 3.71
3332 3350 1.336056 GGAGCTTCTGAAACGACGTCT 60.336 52.381 14.70 0.00 0.00 4.18
3333 3351 1.061485 GGAGCTTCTGAAACGACGTC 58.939 55.000 5.18 5.18 0.00 4.34
3375 3393 3.842923 ATCTGGCTGAGACGCGGG 61.843 66.667 12.47 0.00 31.75 6.13
3378 3396 1.875813 CGTCATCTGGCTGAGACGC 60.876 63.158 22.39 5.98 45.68 5.19
3626 3706 7.308229 GCAGAGAAGAAACAAATAAGAAGCAGA 60.308 37.037 0.00 0.00 0.00 4.26
3629 3709 6.800892 CAGCAGAGAAGAAACAAATAAGAAGC 59.199 38.462 0.00 0.00 0.00 3.86
3630 3710 7.869800 ACAGCAGAGAAGAAACAAATAAGAAG 58.130 34.615 0.00 0.00 0.00 2.85
3632 3712 8.150945 ACTACAGCAGAGAAGAAACAAATAAGA 58.849 33.333 0.00 0.00 0.00 2.10
3633 3713 8.316640 ACTACAGCAGAGAAGAAACAAATAAG 57.683 34.615 0.00 0.00 0.00 1.73
3634 3714 9.424319 CTACTACAGCAGAGAAGAAACAAATAA 57.576 33.333 0.00 0.00 0.00 1.40
3635 3715 8.803235 TCTACTACAGCAGAGAAGAAACAAATA 58.197 33.333 0.00 0.00 0.00 1.40
3636 3716 7.671302 TCTACTACAGCAGAGAAGAAACAAAT 58.329 34.615 0.00 0.00 0.00 2.32
3637 3717 7.050970 TCTACTACAGCAGAGAAGAAACAAA 57.949 36.000 0.00 0.00 0.00 2.83
3644 3826 5.592282 TCCTGAATCTACTACAGCAGAGAAG 59.408 44.000 0.00 0.00 0.00 2.85
3651 3833 7.989416 ATACTACTCCTGAATCTACTACAGC 57.011 40.000 0.00 0.00 0.00 4.40
3679 3861 9.167311 GGTTTCAAGTTACATCAGATGACTTAT 57.833 33.333 17.81 0.00 0.00 1.73
3680 3862 8.375506 AGGTTTCAAGTTACATCAGATGACTTA 58.624 33.333 17.81 1.09 0.00 2.24
3681 3863 7.227156 AGGTTTCAAGTTACATCAGATGACTT 58.773 34.615 17.81 13.53 0.00 3.01
3682 3864 6.773638 AGGTTTCAAGTTACATCAGATGACT 58.226 36.000 17.81 8.10 0.00 3.41
3683 3865 7.173218 TGAAGGTTTCAAGTTACATCAGATGAC 59.827 37.037 17.81 5.79 36.59 3.06
3684 3866 7.223584 TGAAGGTTTCAAGTTACATCAGATGA 58.776 34.615 17.81 0.00 36.59 2.92
3685 3867 7.173907 ACTGAAGGTTTCAAGTTACATCAGATG 59.826 37.037 9.03 9.03 39.58 2.90
3709 3891 6.438763 GCTTTGCACAGTTTGTATAGAAACT 58.561 36.000 19.41 19.41 45.17 2.66
3713 3895 4.651778 AGGCTTTGCACAGTTTGTATAGA 58.348 39.130 1.15 0.00 0.00 1.98
3714 3896 5.376854 AAGGCTTTGCACAGTTTGTATAG 57.623 39.130 1.15 0.00 0.00 1.31
3718 3900 4.670896 AATAAGGCTTTGCACAGTTTGT 57.329 36.364 4.45 0.00 0.00 2.83
3722 3904 5.982890 ACATAAATAAGGCTTTGCACAGT 57.017 34.783 4.45 0.00 0.00 3.55
3723 3905 6.646240 ACAAACATAAATAAGGCTTTGCACAG 59.354 34.615 4.45 0.00 0.00 3.66
3725 3907 6.618379 GCACAAACATAAATAAGGCTTTGCAC 60.618 38.462 4.45 0.00 0.00 4.57
3727 3909 5.407995 TGCACAAACATAAATAAGGCTTTGC 59.592 36.000 4.45 5.08 0.00 3.68
3728 3910 7.599630 ATGCACAAACATAAATAAGGCTTTG 57.400 32.000 4.45 0.00 0.00 2.77
3729 3911 8.620116 AAATGCACAAACATAAATAAGGCTTT 57.380 26.923 4.45 0.00 0.00 3.51
3730 3912 8.620116 AAAATGCACAAACATAAATAAGGCTT 57.380 26.923 4.58 4.58 0.00 4.35
3731 3913 9.717942 TTAAAATGCACAAACATAAATAAGGCT 57.282 25.926 0.00 0.00 0.00 4.58
3740 3922 9.606631 AGGAAAACTTTAAAATGCACAAACATA 57.393 25.926 0.00 0.00 0.00 2.29
3741 3923 8.397148 CAGGAAAACTTTAAAATGCACAAACAT 58.603 29.630 0.00 0.00 0.00 2.71
3742 3924 7.625185 GCAGGAAAACTTTAAAATGCACAAACA 60.625 33.333 0.00 0.00 32.79 2.83
3743 3925 6.686679 GCAGGAAAACTTTAAAATGCACAAAC 59.313 34.615 0.00 0.00 32.79 2.93
3754 3936 3.886505 ACATGGACGCAGGAAAACTTTAA 59.113 39.130 0.00 0.00 0.00 1.52
3755 3937 3.482436 ACATGGACGCAGGAAAACTTTA 58.518 40.909 0.00 0.00 0.00 1.85
3760 3942 1.269517 GCAAACATGGACGCAGGAAAA 60.270 47.619 0.00 0.00 0.00 2.29
3761 3943 0.313672 GCAAACATGGACGCAGGAAA 59.686 50.000 0.00 0.00 0.00 3.13
3764 3946 2.128853 AACGCAAACATGGACGCAGG 62.129 55.000 0.00 0.00 0.00 4.85
3765 3947 0.317770 AAACGCAAACATGGACGCAG 60.318 50.000 0.00 0.00 0.00 5.18
3768 3950 1.002900 AGACAAACGCAAACATGGACG 60.003 47.619 0.00 0.00 0.00 4.79
3770 3952 2.685388 TGAAGACAAACGCAAACATGGA 59.315 40.909 0.00 0.00 0.00 3.41
3794 3976 9.760077 GAAGCTGATTTTGATCATGGAAAATAT 57.240 29.630 0.00 0.00 33.03 1.28
3802 3985 8.474006 TGAAATTGAAGCTGATTTTGATCATG 57.526 30.769 0.00 0.00 0.00 3.07
3807 3990 7.223193 CACAACTGAAATTGAAGCTGATTTTGA 59.777 33.333 0.00 0.00 33.57 2.69
3810 3993 6.808829 TCACAACTGAAATTGAAGCTGATTT 58.191 32.000 0.00 0.00 33.57 2.17
3811 3994 6.395426 TCACAACTGAAATTGAAGCTGATT 57.605 33.333 0.00 0.00 33.57 2.57
3822 4005 8.729756 TGAAACATATCGAATCACAACTGAAAT 58.270 29.630 0.00 0.00 0.00 2.17
3825 4008 6.873605 AGTGAAACATATCGAATCACAACTGA 59.126 34.615 6.94 0.00 42.12 3.41
3826 4009 7.065216 AGTGAAACATATCGAATCACAACTG 57.935 36.000 6.94 0.00 42.12 3.16
3827 4010 7.672983 AAGTGAAACATATCGAATCACAACT 57.327 32.000 6.94 0.52 42.12 3.16
3828 4011 9.988350 AATAAGTGAAACATATCGAATCACAAC 57.012 29.630 6.94 0.00 42.12 3.32
3830 4013 9.161629 ACAATAAGTGAAACATATCGAATCACA 57.838 29.630 6.94 0.00 42.12 3.58
3832 4015 9.599866 AGACAATAAGTGAAACATATCGAATCA 57.400 29.630 0.00 0.00 41.43 2.57
3833 4016 9.855361 CAGACAATAAGTGAAACATATCGAATC 57.145 33.333 0.00 0.00 41.43 2.52
3834 4017 9.599866 TCAGACAATAAGTGAAACATATCGAAT 57.400 29.630 0.00 0.00 41.43 3.34
3836 4019 8.869897 GTTCAGACAATAAGTGAAACATATCGA 58.130 33.333 0.00 0.00 41.43 3.59
3837 4020 8.873830 AGTTCAGACAATAAGTGAAACATATCG 58.126 33.333 0.00 0.00 41.43 2.92
3870 4070 3.933861 ATTCAGACATAAGTGACCCCC 57.066 47.619 0.00 0.00 0.00 5.40
3871 4071 6.884836 ACTAAAATTCAGACATAAGTGACCCC 59.115 38.462 0.00 0.00 0.00 4.95
3872 4072 7.923414 ACTAAAATTCAGACATAAGTGACCC 57.077 36.000 0.00 0.00 0.00 4.46
3875 4808 8.389779 TGCAACTAAAATTCAGACATAAGTGA 57.610 30.769 0.00 0.00 0.00 3.41
3879 4812 9.230122 TGATCTGCAACTAAAATTCAGACATAA 57.770 29.630 0.00 0.00 36.72 1.90
3917 4886 4.820173 ACAAGTCTAAAGCCCAAACTACAC 59.180 41.667 0.00 0.00 0.00 2.90
3936 4905 5.123979 GGAAGGGAAATAAGCTGTACACAAG 59.876 44.000 0.00 0.00 0.00 3.16
3937 4906 5.007682 GGAAGGGAAATAAGCTGTACACAA 58.992 41.667 0.00 0.00 0.00 3.33
3938 4907 4.042311 TGGAAGGGAAATAAGCTGTACACA 59.958 41.667 0.00 0.00 0.00 3.72
3939 4908 4.585879 TGGAAGGGAAATAAGCTGTACAC 58.414 43.478 0.00 0.00 0.00 2.90
3940 4909 4.919774 TGGAAGGGAAATAAGCTGTACA 57.080 40.909 0.00 0.00 0.00 2.90
3941 4910 5.007682 TGTTGGAAGGGAAATAAGCTGTAC 58.992 41.667 0.00 0.00 0.00 2.90
3943 4912 3.826729 GTGTTGGAAGGGAAATAAGCTGT 59.173 43.478 0.00 0.00 0.00 4.40
3945 4914 4.112634 TGTGTTGGAAGGGAAATAAGCT 57.887 40.909 0.00 0.00 0.00 3.74
3946 4915 4.864704 TTGTGTTGGAAGGGAAATAAGC 57.135 40.909 0.00 0.00 0.00 3.09
3949 4918 6.325028 TCATGTTTTGTGTTGGAAGGGAAATA 59.675 34.615 0.00 0.00 0.00 1.40
3950 4919 5.130145 TCATGTTTTGTGTTGGAAGGGAAAT 59.870 36.000 0.00 0.00 0.00 2.17
3951 4920 4.467795 TCATGTTTTGTGTTGGAAGGGAAA 59.532 37.500 0.00 0.00 0.00 3.13
3952 4921 4.026744 TCATGTTTTGTGTTGGAAGGGAA 58.973 39.130 0.00 0.00 0.00 3.97
3954 4923 4.605640 ATCATGTTTTGTGTTGGAAGGG 57.394 40.909 0.00 0.00 0.00 3.95
3955 4924 6.923928 AAAATCATGTTTTGTGTTGGAAGG 57.076 33.333 2.56 0.00 0.00 3.46
3968 4937 3.398406 GCGGGGAAACAAAAATCATGTT 58.602 40.909 0.00 0.00 42.56 2.71
3969 4938 2.609244 CGCGGGGAAACAAAAATCATGT 60.609 45.455 0.00 0.00 0.00 3.21
3970 4939 1.991965 CGCGGGGAAACAAAAATCATG 59.008 47.619 0.00 0.00 0.00 3.07
3971 4940 1.671556 GCGCGGGGAAACAAAAATCAT 60.672 47.619 8.83 0.00 0.00 2.45
3972 4941 0.319125 GCGCGGGGAAACAAAAATCA 60.319 50.000 8.83 0.00 0.00 2.57
3973 4942 1.341369 CGCGCGGGGAAACAAAAATC 61.341 55.000 24.84 0.00 0.00 2.17
3974 4943 1.372375 CGCGCGGGGAAACAAAAAT 60.372 52.632 24.84 0.00 0.00 1.82
3975 4944 2.026301 CGCGCGGGGAAACAAAAA 59.974 55.556 24.84 0.00 0.00 1.94
3976 4945 1.442526 TAACGCGCGGGGAAACAAAA 61.443 50.000 35.22 3.27 0.00 2.44
3977 4946 1.442526 TTAACGCGCGGGGAAACAAA 61.443 50.000 35.22 12.44 0.00 2.83
3978 4947 1.235948 ATTAACGCGCGGGGAAACAA 61.236 50.000 35.22 15.90 0.00 2.83
3981 4950 1.331138 CATAATTAACGCGCGGGGAAA 59.669 47.619 35.22 21.20 0.00 3.13
3983 4952 0.881159 CCATAATTAACGCGCGGGGA 60.881 55.000 35.22 18.99 0.00 4.81
3984 4953 1.161563 ACCATAATTAACGCGCGGGG 61.162 55.000 35.22 21.48 0.00 5.73
3985 4954 0.233848 GACCATAATTAACGCGCGGG 59.766 55.000 35.22 23.96 0.00 6.13
3986 4955 1.070843 CAGACCATAATTAACGCGCGG 60.071 52.381 35.22 16.31 0.00 6.46
3987 4956 1.070843 CCAGACCATAATTAACGCGCG 60.071 52.381 30.96 30.96 0.00 6.86
3988 4957 2.206750 TCCAGACCATAATTAACGCGC 58.793 47.619 5.73 0.00 0.00 6.86
3989 4958 2.221055 GCTCCAGACCATAATTAACGCG 59.779 50.000 3.53 3.53 0.00 6.01
3991 4960 4.273480 CCTTGCTCCAGACCATAATTAACG 59.727 45.833 0.00 0.00 0.00 3.18
3992 4961 4.036852 GCCTTGCTCCAGACCATAATTAAC 59.963 45.833 0.00 0.00 0.00 2.01
3994 4963 3.435026 GGCCTTGCTCCAGACCATAATTA 60.435 47.826 0.00 0.00 0.00 1.40
3995 4964 2.659428 GCCTTGCTCCAGACCATAATT 58.341 47.619 0.00 0.00 0.00 1.40
3996 4965 1.133668 GGCCTTGCTCCAGACCATAAT 60.134 52.381 0.00 0.00 0.00 1.28
3998 4967 0.913934 TGGCCTTGCTCCAGACCATA 60.914 55.000 3.32 0.00 0.00 2.74
3999 4968 2.233566 TGGCCTTGCTCCAGACCAT 61.234 57.895 3.32 0.00 0.00 3.55
4005 4974 4.020617 CCGTCTGGCCTTGCTCCA 62.021 66.667 3.32 0.00 0.00 3.86
4017 4986 1.069668 AGGTTAAACTTCGTGCCGTCT 59.930 47.619 0.00 0.00 0.00 4.18
4018 4987 1.193874 CAGGTTAAACTTCGTGCCGTC 59.806 52.381 0.00 0.00 0.00 4.79
4020 4989 1.223187 ACAGGTTAAACTTCGTGCCG 58.777 50.000 0.00 0.00 0.00 5.69
4021 4990 5.366829 AATTACAGGTTAAACTTCGTGCC 57.633 39.130 0.00 0.00 0.00 5.01
4024 4993 7.797038 ACTGAAATTACAGGTTAAACTTCGT 57.203 32.000 0.00 0.00 41.59 3.85
4026 4995 8.235226 GCCTACTGAAATTACAGGTTAAACTTC 58.765 37.037 0.00 0.00 41.59 3.01
4029 4998 7.683437 AGCCTACTGAAATTACAGGTTAAAC 57.317 36.000 0.00 0.00 41.59 2.01
4042 5011 7.432148 TTTCCATCTATGTAGCCTACTGAAA 57.568 36.000 3.13 0.00 0.00 2.69
4047 5016 5.412904 GCCATTTTCCATCTATGTAGCCTAC 59.587 44.000 0.00 0.00 0.00 3.18
4050 5019 4.401925 AGCCATTTTCCATCTATGTAGCC 58.598 43.478 0.00 0.00 0.00 3.93
4068 5037 6.945435 TGGAATCAGTACAATAAGAAAAGCCA 59.055 34.615 0.00 0.00 0.00 4.75
4070 5039 9.860898 AAATGGAATCAGTACAATAAGAAAAGC 57.139 29.630 0.00 0.00 0.00 3.51
4087 5056 8.469200 TGATCATCCTGTAAACAAAATGGAATC 58.531 33.333 0.00 0.00 0.00 2.52
4096 5065 6.430925 CCAGTTTCTGATCATCCTGTAAACAA 59.569 38.462 0.00 0.00 32.44 2.83
4103 5072 5.095145 TCTTCCAGTTTCTGATCATCCTG 57.905 43.478 0.00 0.17 32.44 3.86
4105 5074 4.275443 GCATCTTCCAGTTTCTGATCATCC 59.725 45.833 0.00 0.00 32.44 3.51
4109 5078 3.376546 GGTGCATCTTCCAGTTTCTGATC 59.623 47.826 0.00 0.00 32.44 2.92
4119 5088 1.559368 CAATTGGGGTGCATCTTCCA 58.441 50.000 0.00 0.00 0.00 3.53
4120 5089 0.176449 GCAATTGGGGTGCATCTTCC 59.824 55.000 7.72 0.00 41.80 3.46
4121 5090 0.896923 TGCAATTGGGGTGCATCTTC 59.103 50.000 7.72 0.00 46.76 2.87
4136 5105 6.205853 ACGAAAATGTAAGGAACTGTATGCAA 59.794 34.615 0.00 0.00 40.86 4.08
4145 5114 3.907894 TGGCACGAAAATGTAAGGAAC 57.092 42.857 0.00 0.00 0.00 3.62
4146 5115 4.095782 GCTATGGCACGAAAATGTAAGGAA 59.904 41.667 0.00 0.00 38.54 3.36
4148 5117 3.376859 TGCTATGGCACGAAAATGTAAGG 59.623 43.478 0.00 0.00 44.28 2.69
4149 5118 4.332543 TCTGCTATGGCACGAAAATGTAAG 59.667 41.667 0.00 0.00 44.28 2.34
4150 5119 4.257731 TCTGCTATGGCACGAAAATGTAA 58.742 39.130 0.00 0.00 44.28 2.41
4151 5120 3.867857 TCTGCTATGGCACGAAAATGTA 58.132 40.909 0.00 0.00 44.28 2.29
4152 5121 2.679837 CTCTGCTATGGCACGAAAATGT 59.320 45.455 0.00 0.00 44.28 2.71
4153 5122 2.540361 GCTCTGCTATGGCACGAAAATG 60.540 50.000 0.00 0.00 44.28 2.32
4154 5123 1.672881 GCTCTGCTATGGCACGAAAAT 59.327 47.619 0.00 0.00 44.28 1.82
4155 5124 1.086696 GCTCTGCTATGGCACGAAAA 58.913 50.000 0.00 0.00 44.28 2.29
4156 5125 0.036483 TGCTCTGCTATGGCACGAAA 60.036 50.000 0.00 0.00 44.28 3.46
4157 5126 0.460811 CTGCTCTGCTATGGCACGAA 60.461 55.000 0.00 0.00 44.28 3.85
4158 5127 1.142531 CTGCTCTGCTATGGCACGA 59.857 57.895 0.00 1.37 44.28 4.35
4160 5129 1.450848 TGCTGCTCTGCTATGGCAC 60.451 57.895 0.00 0.00 44.28 5.01
4162 5131 0.818445 ATGTGCTGCTCTGCTATGGC 60.818 55.000 0.00 0.00 39.26 4.40
4163 5132 1.333931 CAATGTGCTGCTCTGCTATGG 59.666 52.381 0.00 0.00 0.00 2.74
4165 5134 2.414994 ACAATGTGCTGCTCTGCTAT 57.585 45.000 0.00 0.00 0.00 2.97
4166 5135 2.079158 GAACAATGTGCTGCTCTGCTA 58.921 47.619 0.00 0.00 0.00 3.49
4167 5136 0.879765 GAACAATGTGCTGCTCTGCT 59.120 50.000 0.00 0.00 0.00 4.24
4168 5137 0.453950 CGAACAATGTGCTGCTCTGC 60.454 55.000 0.00 0.00 0.00 4.26
4169 5138 0.167470 CCGAACAATGTGCTGCTCTG 59.833 55.000 0.00 0.00 0.00 3.35
4170 5139 0.035317 TCCGAACAATGTGCTGCTCT 59.965 50.000 0.00 0.00 0.00 4.09
4171 5140 1.063174 GATCCGAACAATGTGCTGCTC 59.937 52.381 0.00 0.00 0.00 4.26
4172 5141 1.089920 GATCCGAACAATGTGCTGCT 58.910 50.000 0.00 0.00 0.00 4.24
4173 5142 0.247814 CGATCCGAACAATGTGCTGC 60.248 55.000 0.00 0.00 0.00 5.25
4174 5143 1.358877 TCGATCCGAACAATGTGCTG 58.641 50.000 0.00 0.00 31.06 4.41
4175 5144 2.093306 TTCGATCCGAACAATGTGCT 57.907 45.000 0.00 0.00 41.05 4.40
4185 5154 2.235016 GGCGCGAAATTCGATCCGA 61.235 57.895 20.38 0.00 43.74 4.55
4186 5155 2.031044 TTGGCGCGAAATTCGATCCG 62.031 55.000 20.38 13.91 43.74 4.18
4191 5160 0.634731 CAATGTTGGCGCGAAATTCG 59.365 50.000 12.10 11.47 43.89 3.34
4199 5168 2.497107 AAGATATGCAATGTTGGCGC 57.503 45.000 0.00 0.00 0.00 6.53
4200 5169 5.361135 TGATAAGATATGCAATGTTGGCG 57.639 39.130 0.00 0.00 0.00 5.69
4252 5221 9.959749 GTACAAACAAACAAGGATCATAGAAAA 57.040 29.630 0.00 0.00 0.00 2.29
4254 5223 8.918202 AGTACAAACAAACAAGGATCATAGAA 57.082 30.769 0.00 0.00 0.00 2.10
4255 5224 9.653287 CTAGTACAAACAAACAAGGATCATAGA 57.347 33.333 0.00 0.00 0.00 1.98
4256 5225 8.391106 GCTAGTACAAACAAACAAGGATCATAG 58.609 37.037 0.00 0.00 0.00 2.23
4257 5226 7.880713 TGCTAGTACAAACAAACAAGGATCATA 59.119 33.333 0.00 0.00 0.00 2.15
4266 5235 5.209240 GCGAAATGCTAGTACAAACAAACA 58.791 37.500 0.00 0.00 41.73 2.83
4268 5237 5.425577 TGCGAAATGCTAGTACAAACAAA 57.574 34.783 0.00 0.00 46.63 2.83
4271 5240 5.063438 TCTCATGCGAAATGCTAGTACAAAC 59.937 40.000 0.00 0.00 46.63 2.93
4280 5249 3.444742 TCCATTTTCTCATGCGAAATGCT 59.555 39.130 11.43 0.00 46.63 3.79
4313 5282 2.553086 TCACACGGGTTTACAGTGAAC 58.447 47.619 12.47 0.00 39.04 3.18
4314 5283 2.983907 TCACACGGGTTTACAGTGAA 57.016 45.000 12.47 0.00 39.04 3.18
4315 5284 2.983907 TTCACACGGGTTTACAGTGA 57.016 45.000 12.47 0.00 39.04 3.41
4316 5285 4.035792 TGAATTTCACACGGGTTTACAGTG 59.964 41.667 0.00 6.29 41.28 3.66
4317 5286 4.200874 TGAATTTCACACGGGTTTACAGT 58.799 39.130 0.00 0.00 0.00 3.55
4318 5287 4.783242 CTGAATTTCACACGGGTTTACAG 58.217 43.478 0.00 0.00 0.00 2.74
4319 5288 3.003897 GCTGAATTTCACACGGGTTTACA 59.996 43.478 0.00 0.00 0.00 2.41
4320 5289 3.003897 TGCTGAATTTCACACGGGTTTAC 59.996 43.478 0.00 0.00 0.00 2.01
4321 5290 3.215151 TGCTGAATTTCACACGGGTTTA 58.785 40.909 0.00 0.00 0.00 2.01
4322 5291 2.028130 TGCTGAATTTCACACGGGTTT 58.972 42.857 0.00 0.00 0.00 3.27
4324 5293 1.608590 CTTGCTGAATTTCACACGGGT 59.391 47.619 0.00 0.00 0.00 5.28
4325 5294 1.608590 ACTTGCTGAATTTCACACGGG 59.391 47.619 0.00 0.00 0.00 5.28
4326 5295 3.354089 AACTTGCTGAATTTCACACGG 57.646 42.857 0.00 0.00 0.00 4.94
4360 5735 2.357637 CGGGTTTACAATGCTACCATGG 59.642 50.000 11.19 11.19 32.20 3.66
4362 5737 3.013921 CACGGGTTTACAATGCTACCAT 58.986 45.455 0.00 0.00 32.20 3.55
4367 5742 0.596082 GCACACGGGTTTACAATGCT 59.404 50.000 0.00 0.00 0.00 3.79
4372 5747 1.405821 CCTTTTGCACACGGGTTTACA 59.594 47.619 0.00 0.00 0.00 2.41
4373 5748 1.677052 TCCTTTTGCACACGGGTTTAC 59.323 47.619 0.00 0.00 0.00 2.01
4376 5751 0.958822 GATCCTTTTGCACACGGGTT 59.041 50.000 0.00 0.00 0.00 4.11
4381 5756 1.251251 AGGCTGATCCTTTTGCACAC 58.749 50.000 0.00 0.00 44.75 3.82
4391 5766 2.019984 CAGCTTACCAAAGGCTGATCC 58.980 52.381 8.25 0.00 38.26 3.36
4393 5768 1.272092 TGCAGCTTACCAAAGGCTGAT 60.272 47.619 16.70 0.00 38.26 2.90
4394 5769 0.110295 TGCAGCTTACCAAAGGCTGA 59.890 50.000 16.70 1.38 38.26 4.26
4395 5770 0.961019 TTGCAGCTTACCAAAGGCTG 59.039 50.000 9.44 9.44 38.65 4.85
4416 5798 4.959596 CTGAAGCATCAGTATTTGCACT 57.040 40.909 10.80 0.00 46.60 4.40
4462 5844 9.209175 GAGCTGTAAATTTTCAGAAAGAGTCTA 57.791 33.333 24.14 0.00 33.56 2.59
4464 5846 7.865707 TGAGCTGTAAATTTTCAGAAAGAGTC 58.134 34.615 24.14 12.13 34.02 3.36
4516 5907 3.591023 TCAAGGCGAAATTATCACGTCA 58.409 40.909 0.00 0.00 34.03 4.35
4518 5909 5.448632 GGAAATCAAGGCGAAATTATCACGT 60.449 40.000 0.00 0.00 0.00 4.49
4534 5925 7.989947 AGTAAGTAGATGGGTAGGAAATCAA 57.010 36.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.