Multiple sequence alignment - TraesCS3B01G038500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G038500 chr3B 100.000 2485 0 0 1 2485 18541363 18543847 0.000000e+00 4590.0
1 TraesCS3B01G038500 chr3B 93.351 1519 79 8 437 1937 644434853 644433339 0.000000e+00 2226.0
2 TraesCS3B01G038500 chr3B 95.881 437 18 0 1 437 3567029 3567465 0.000000e+00 708.0
3 TraesCS3B01G038500 chr6B 94.851 2078 89 8 424 2485 564719715 564721790 0.000000e+00 3229.0
4 TraesCS3B01G038500 chr6B 95.004 1141 47 3 801 1936 527622775 527621640 0.000000e+00 1783.0
5 TraesCS3B01G038500 chr6B 89.524 420 34 4 437 850 115236702 115236287 7.870000e-145 523.0
6 TraesCS3B01G038500 chr3A 93.519 2083 95 19 427 2485 714029564 714027498 0.000000e+00 3062.0
7 TraesCS3B01G038500 chr7A 92.829 2064 108 17 436 2485 71731328 71733365 0.000000e+00 2955.0
8 TraesCS3B01G038500 chr2A 94.619 1691 70 5 814 2485 617004275 617005963 0.000000e+00 2599.0
9 TraesCS3B01G038500 chr2A 95.069 1156 49 4 1254 2402 647179026 647180180 0.000000e+00 1812.0
10 TraesCS3B01G038500 chr5B 91.202 1523 91 14 437 1937 468307855 468306354 0.000000e+00 2030.0
11 TraesCS3B01G038500 chr1A 95.156 1156 49 3 1254 2402 401548688 401547533 0.000000e+00 1818.0
12 TraesCS3B01G038500 chr1A 89.892 554 44 9 986 1529 583604890 583605441 0.000000e+00 702.0
13 TraesCS3B01G038500 chr1A 90.863 394 27 4 436 821 410203300 410203692 1.020000e-143 520.0
14 TraesCS3B01G038500 chr1A 92.453 53 4 0 825 877 530731454 530731402 2.650000e-10 76.8
15 TraesCS3B01G038500 chr5A 94.923 1162 44 6 1254 2402 27125971 27124812 0.000000e+00 1805.0
16 TraesCS3B01G038500 chr4A 93.836 1168 53 5 1254 2402 550328060 550326893 0.000000e+00 1740.0
17 TraesCS3B01G038500 chr7D 96.339 437 16 0 1 437 623718391 623718827 0.000000e+00 719.0
18 TraesCS3B01G038500 chr7D 96.313 434 10 2 1 434 15094677 15095104 0.000000e+00 708.0
19 TraesCS3B01G038500 chr7D 92.875 393 19 4 437 821 503944578 503944187 1.670000e-156 562.0
20 TraesCS3B01G038500 chr7D 92.222 90 4 1 791 877 503944189 503944100 9.330000e-25 124.0
21 TraesCS3B01G038500 chr2D 96.339 437 16 0 1 437 519723296 519723732 0.000000e+00 719.0
22 TraesCS3B01G038500 chrUn 96.339 437 13 2 1 437 96342391 96341958 0.000000e+00 715.0
23 TraesCS3B01G038500 chr6A 95.890 438 16 2 1 437 110679123 110678687 0.000000e+00 708.0
24 TraesCS3B01G038500 chr3D 95.881 437 18 0 1 437 60485580 60486016 0.000000e+00 708.0
25 TraesCS3B01G038500 chr7B 95.682 440 16 1 1 437 463341788 463342227 0.000000e+00 704.0
26 TraesCS3B01G038500 chr4D 95.881 437 15 2 1 437 199141887 199142320 0.000000e+00 704.0
27 TraesCS3B01G038500 chr1B 87.608 581 42 19 986 1537 676746695 676747274 0.000000e+00 647.0
28 TraesCS3B01G038500 chr2B 90.265 452 26 7 437 877 69470166 69469722 2.140000e-160 575.0
29 TraesCS3B01G038500 chr2B 91.094 393 27 3 437 821 799774042 799774434 2.190000e-145 525.0
30 TraesCS3B01G038500 chr4B 89.231 455 36 6 434 875 627802733 627802279 7.760000e-155 556.0
31 TraesCS3B01G038500 chr5D 91.111 90 5 1 791 877 394992040 394992129 4.340000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G038500 chr3B 18541363 18543847 2484 False 4590 4590 100.000 1 2485 1 chr3B.!!$F2 2484
1 TraesCS3B01G038500 chr3B 644433339 644434853 1514 True 2226 2226 93.351 437 1937 1 chr3B.!!$R1 1500
2 TraesCS3B01G038500 chr6B 564719715 564721790 2075 False 3229 3229 94.851 424 2485 1 chr6B.!!$F1 2061
3 TraesCS3B01G038500 chr6B 527621640 527622775 1135 True 1783 1783 95.004 801 1936 1 chr6B.!!$R2 1135
4 TraesCS3B01G038500 chr3A 714027498 714029564 2066 True 3062 3062 93.519 427 2485 1 chr3A.!!$R1 2058
5 TraesCS3B01G038500 chr7A 71731328 71733365 2037 False 2955 2955 92.829 436 2485 1 chr7A.!!$F1 2049
6 TraesCS3B01G038500 chr2A 617004275 617005963 1688 False 2599 2599 94.619 814 2485 1 chr2A.!!$F1 1671
7 TraesCS3B01G038500 chr2A 647179026 647180180 1154 False 1812 1812 95.069 1254 2402 1 chr2A.!!$F2 1148
8 TraesCS3B01G038500 chr5B 468306354 468307855 1501 True 2030 2030 91.202 437 1937 1 chr5B.!!$R1 1500
9 TraesCS3B01G038500 chr1A 401547533 401548688 1155 True 1818 1818 95.156 1254 2402 1 chr1A.!!$R1 1148
10 TraesCS3B01G038500 chr1A 583604890 583605441 551 False 702 702 89.892 986 1529 1 chr1A.!!$F2 543
11 TraesCS3B01G038500 chr5A 27124812 27125971 1159 True 1805 1805 94.923 1254 2402 1 chr5A.!!$R1 1148
12 TraesCS3B01G038500 chr4A 550326893 550328060 1167 True 1740 1740 93.836 1254 2402 1 chr4A.!!$R1 1148
13 TraesCS3B01G038500 chr1B 676746695 676747274 579 False 647 647 87.608 986 1537 1 chr1B.!!$F1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 166 0.036732 TTGAACTGCCTCTTCGCCAT 59.963 50.0 0.0 0.0 0.0 4.40 F
253 254 0.108041 TCGTTATTTCCTGCCCCGTC 60.108 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1461 1523 0.689080 TCTCCTCTCATCACAGGGCC 60.689 60.0 0.0 0.0 0.0 5.80 R
2216 2315 1.097547 GGCTGATGTTGATGTCCCCG 61.098 60.0 0.0 0.0 0.0 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.560251 ACCTCCAGTTGCGCCAGT 61.560 61.111 4.18 0.00 0.00 4.00
18 19 2.281761 CCTCCAGTTGCGCCAGTT 60.282 61.111 4.18 0.00 0.00 3.16
19 20 1.898574 CCTCCAGTTGCGCCAGTTT 60.899 57.895 4.18 0.00 0.00 2.66
20 21 1.283793 CTCCAGTTGCGCCAGTTTG 59.716 57.895 4.18 0.00 0.00 2.93
21 22 2.133742 CTCCAGTTGCGCCAGTTTGG 62.134 60.000 4.18 6.05 41.55 3.28
31 32 2.381445 CCAGTTTGGCCTCCTCTCT 58.619 57.895 3.32 0.00 0.00 3.10
32 33 0.695347 CCAGTTTGGCCTCCTCTCTT 59.305 55.000 3.32 0.00 0.00 2.85
33 34 1.612726 CCAGTTTGGCCTCCTCTCTTG 60.613 57.143 3.32 0.00 0.00 3.02
34 35 1.349026 CAGTTTGGCCTCCTCTCTTGA 59.651 52.381 3.32 0.00 0.00 3.02
35 36 2.057922 AGTTTGGCCTCCTCTCTTGAA 58.942 47.619 3.32 0.00 0.00 2.69
36 37 2.039613 AGTTTGGCCTCCTCTCTTGAAG 59.960 50.000 3.32 0.00 0.00 3.02
37 38 0.326264 TTGGCCTCCTCTCTTGAAGC 59.674 55.000 3.32 0.00 0.00 3.86
38 39 0.837691 TGGCCTCCTCTCTTGAAGCA 60.838 55.000 3.32 0.00 0.00 3.91
39 40 0.107752 GGCCTCCTCTCTTGAAGCAG 60.108 60.000 0.00 0.00 0.00 4.24
40 41 0.744057 GCCTCCTCTCTTGAAGCAGC 60.744 60.000 0.00 0.00 0.00 5.25
41 42 0.903942 CCTCCTCTCTTGAAGCAGCT 59.096 55.000 0.00 0.00 0.00 4.24
42 43 1.134729 CCTCCTCTCTTGAAGCAGCTC 60.135 57.143 0.00 0.00 0.00 4.09
43 44 1.826720 CTCCTCTCTTGAAGCAGCTCT 59.173 52.381 0.00 0.00 0.00 4.09
44 45 1.549620 TCCTCTCTTGAAGCAGCTCTG 59.450 52.381 0.00 0.00 0.00 3.35
45 46 1.275856 CCTCTCTTGAAGCAGCTCTGT 59.724 52.381 0.00 0.00 0.00 3.41
46 47 2.495270 CCTCTCTTGAAGCAGCTCTGTA 59.505 50.000 0.00 0.00 0.00 2.74
47 48 3.429272 CCTCTCTTGAAGCAGCTCTGTAG 60.429 52.174 0.00 0.00 0.00 2.74
59 60 3.328237 GCTCTGTAGCTAGTCGTCTTC 57.672 52.381 0.00 0.00 45.85 2.87
60 61 2.940410 GCTCTGTAGCTAGTCGTCTTCT 59.060 50.000 0.00 0.00 45.85 2.85
61 62 3.375922 GCTCTGTAGCTAGTCGTCTTCTT 59.624 47.826 0.00 0.00 45.85 2.52
62 63 4.729458 GCTCTGTAGCTAGTCGTCTTCTTG 60.729 50.000 0.00 0.00 45.85 3.02
63 64 3.127203 TCTGTAGCTAGTCGTCTTCTTGC 59.873 47.826 0.00 0.00 34.84 4.01
64 65 2.159558 TGTAGCTAGTCGTCTTCTTGCG 60.160 50.000 0.00 0.00 38.33 4.85
65 66 1.166129 AGCTAGTCGTCTTCTTGCGA 58.834 50.000 0.00 0.00 38.33 5.10
66 67 1.540267 AGCTAGTCGTCTTCTTGCGAA 59.460 47.619 0.00 0.00 38.91 4.70
67 68 1.914700 GCTAGTCGTCTTCTTGCGAAG 59.085 52.381 0.00 0.00 46.41 3.79
81 82 3.540211 CGAAGCAGGTCTCCAACAT 57.460 52.632 0.00 0.00 0.00 2.71
82 83 1.081892 CGAAGCAGGTCTCCAACATG 58.918 55.000 0.00 0.00 42.56 3.21
83 84 1.609061 CGAAGCAGGTCTCCAACATGT 60.609 52.381 0.00 0.00 41.70 3.21
84 85 1.808945 GAAGCAGGTCTCCAACATGTG 59.191 52.381 0.00 0.00 41.70 3.21
92 93 3.061848 CCAACATGTGGGTCCCGC 61.062 66.667 15.15 15.15 44.64 6.13
101 102 4.424711 GGGTCCCGCATGGCTGAA 62.425 66.667 0.00 0.00 0.00 3.02
102 103 3.134127 GGTCCCGCATGGCTGAAC 61.134 66.667 0.00 0.00 0.00 3.18
103 104 2.045926 GTCCCGCATGGCTGAACT 60.046 61.111 0.00 0.00 0.00 3.01
104 105 1.675641 GTCCCGCATGGCTGAACTT 60.676 57.895 0.00 0.00 0.00 2.66
105 106 0.392461 GTCCCGCATGGCTGAACTTA 60.392 55.000 0.00 0.00 0.00 2.24
106 107 0.107703 TCCCGCATGGCTGAACTTAG 60.108 55.000 0.00 0.00 0.00 2.18
107 108 0.392998 CCCGCATGGCTGAACTTAGT 60.393 55.000 0.00 0.00 0.00 2.24
108 109 1.134521 CCCGCATGGCTGAACTTAGTA 60.135 52.381 0.00 0.00 0.00 1.82
109 110 2.205074 CCGCATGGCTGAACTTAGTAG 58.795 52.381 0.00 0.00 0.00 2.57
110 111 1.594862 CGCATGGCTGAACTTAGTAGC 59.405 52.381 0.00 0.00 36.74 3.58
111 112 1.594862 GCATGGCTGAACTTAGTAGCG 59.405 52.381 0.00 0.00 38.31 4.26
112 113 2.738643 GCATGGCTGAACTTAGTAGCGA 60.739 50.000 0.00 0.00 38.31 4.93
113 114 2.649331 TGGCTGAACTTAGTAGCGAC 57.351 50.000 1.63 0.00 38.31 5.19
114 115 1.135489 TGGCTGAACTTAGTAGCGACG 60.135 52.381 1.63 0.00 38.31 5.12
115 116 1.131883 GGCTGAACTTAGTAGCGACGA 59.868 52.381 0.00 0.00 38.31 4.20
116 117 2.415090 GGCTGAACTTAGTAGCGACGAA 60.415 50.000 0.00 0.00 38.31 3.85
117 118 2.847133 GCTGAACTTAGTAGCGACGAAG 59.153 50.000 16.14 16.14 42.29 3.79
118 119 3.425892 GCTGAACTTAGTAGCGACGAAGA 60.426 47.826 22.69 3.77 39.84 2.87
119 120 4.731193 GCTGAACTTAGTAGCGACGAAGAT 60.731 45.833 22.69 13.33 39.84 2.40
120 121 4.659088 TGAACTTAGTAGCGACGAAGATG 58.341 43.478 22.69 2.15 39.84 2.90
121 122 3.694535 ACTTAGTAGCGACGAAGATGG 57.305 47.619 22.69 1.83 39.84 3.51
122 123 2.223525 ACTTAGTAGCGACGAAGATGGC 60.224 50.000 22.69 0.00 39.84 4.40
123 124 0.306840 TAGTAGCGACGAAGATGGCG 59.693 55.000 0.00 0.00 0.00 5.69
124 125 1.944676 GTAGCGACGAAGATGGCGG 60.945 63.158 0.00 0.00 0.00 6.13
125 126 3.768185 TAGCGACGAAGATGGCGGC 62.768 63.158 0.00 0.00 0.00 6.53
128 129 3.554692 GACGAAGATGGCGGCGTG 61.555 66.667 9.10 0.00 37.07 5.34
129 130 4.373116 ACGAAGATGGCGGCGTGT 62.373 61.111 9.10 0.00 35.44 4.49
130 131 3.554692 CGAAGATGGCGGCGTGTC 61.555 66.667 9.10 4.85 0.00 3.67
131 132 3.195698 GAAGATGGCGGCGTGTCC 61.196 66.667 9.10 1.13 0.00 4.02
142 143 3.449042 CGTGTCCGCGTCTTCTTC 58.551 61.111 4.92 0.00 0.00 2.87
143 144 1.081376 CGTGTCCGCGTCTTCTTCT 60.081 57.895 4.92 0.00 0.00 2.85
144 145 1.066114 CGTGTCCGCGTCTTCTTCTC 61.066 60.000 4.92 0.00 0.00 2.87
145 146 0.733223 GTGTCCGCGTCTTCTTCTCC 60.733 60.000 4.92 0.00 0.00 3.71
146 147 0.894184 TGTCCGCGTCTTCTTCTCCT 60.894 55.000 4.92 0.00 0.00 3.69
147 148 0.244178 GTCCGCGTCTTCTTCTCCTT 59.756 55.000 4.92 0.00 0.00 3.36
148 149 0.243907 TCCGCGTCTTCTTCTCCTTG 59.756 55.000 4.92 0.00 0.00 3.61
149 150 0.243907 CCGCGTCTTCTTCTCCTTGA 59.756 55.000 4.92 0.00 0.00 3.02
150 151 1.336887 CCGCGTCTTCTTCTCCTTGAA 60.337 52.381 4.92 0.00 0.00 2.69
151 152 1.721926 CGCGTCTTCTTCTCCTTGAAC 59.278 52.381 0.00 0.00 0.00 3.18
152 153 2.608261 CGCGTCTTCTTCTCCTTGAACT 60.608 50.000 0.00 0.00 0.00 3.01
153 154 2.734079 GCGTCTTCTTCTCCTTGAACTG 59.266 50.000 0.00 0.00 0.00 3.16
154 155 2.734079 CGTCTTCTTCTCCTTGAACTGC 59.266 50.000 0.00 0.00 0.00 4.40
155 156 3.070748 GTCTTCTTCTCCTTGAACTGCC 58.929 50.000 0.00 0.00 0.00 4.85
156 157 2.975489 TCTTCTTCTCCTTGAACTGCCT 59.025 45.455 0.00 0.00 0.00 4.75
157 158 3.007398 TCTTCTTCTCCTTGAACTGCCTC 59.993 47.826 0.00 0.00 0.00 4.70
158 159 2.614259 TCTTCTCCTTGAACTGCCTCT 58.386 47.619 0.00 0.00 0.00 3.69
159 160 2.975489 TCTTCTCCTTGAACTGCCTCTT 59.025 45.455 0.00 0.00 0.00 2.85
160 161 3.007398 TCTTCTCCTTGAACTGCCTCTTC 59.993 47.826 0.00 0.00 0.00 2.87
161 162 1.273606 TCTCCTTGAACTGCCTCTTCG 59.726 52.381 0.00 0.00 0.00 3.79
162 163 0.320771 TCCTTGAACTGCCTCTTCGC 60.321 55.000 0.00 0.00 0.00 4.70
163 164 1.301677 CCTTGAACTGCCTCTTCGCC 61.302 60.000 0.00 0.00 0.00 5.54
164 165 0.603707 CTTGAACTGCCTCTTCGCCA 60.604 55.000 0.00 0.00 0.00 5.69
165 166 0.036732 TTGAACTGCCTCTTCGCCAT 59.963 50.000 0.00 0.00 0.00 4.40
166 167 0.391661 TGAACTGCCTCTTCGCCATC 60.392 55.000 0.00 0.00 0.00 3.51
167 168 1.424493 GAACTGCCTCTTCGCCATCG 61.424 60.000 0.00 0.00 0.00 3.84
168 169 1.888436 AACTGCCTCTTCGCCATCGA 61.888 55.000 0.00 0.00 43.89 3.59
169 170 1.880340 CTGCCTCTTCGCCATCGAC 60.880 63.158 0.00 0.00 45.43 4.20
170 171 2.184322 GCCTCTTCGCCATCGACA 59.816 61.111 0.00 0.00 45.43 4.35
171 172 1.227380 GCCTCTTCGCCATCGACAT 60.227 57.895 0.00 0.00 45.43 3.06
172 173 0.811616 GCCTCTTCGCCATCGACATT 60.812 55.000 0.00 0.00 45.43 2.71
173 174 1.656652 CCTCTTCGCCATCGACATTT 58.343 50.000 0.00 0.00 45.43 2.32
174 175 1.594862 CCTCTTCGCCATCGACATTTC 59.405 52.381 0.00 0.00 45.43 2.17
175 176 1.594862 CTCTTCGCCATCGACATTTCC 59.405 52.381 0.00 0.00 45.43 3.13
176 177 0.301687 CTTCGCCATCGACATTTCCG 59.698 55.000 0.00 0.00 45.43 4.30
177 178 0.108567 TTCGCCATCGACATTTCCGA 60.109 50.000 0.00 0.00 45.43 4.55
178 179 0.527600 TCGCCATCGACATTTCCGAG 60.528 55.000 0.00 0.00 40.21 4.63
179 180 1.490693 CGCCATCGACATTTCCGAGG 61.491 60.000 0.00 0.00 39.55 4.63
180 181 1.776034 GCCATCGACATTTCCGAGGC 61.776 60.000 0.00 0.00 40.32 4.70
181 182 0.179073 CCATCGACATTTCCGAGGCT 60.179 55.000 0.00 0.00 39.55 4.58
182 183 0.933097 CATCGACATTTCCGAGGCTG 59.067 55.000 0.00 0.00 39.55 4.85
183 184 0.537188 ATCGACATTTCCGAGGCTGT 59.463 50.000 0.00 0.00 39.55 4.40
184 185 0.108804 TCGACATTTCCGAGGCTGTC 60.109 55.000 0.00 0.00 35.72 3.51
185 186 0.108615 CGACATTTCCGAGGCTGTCT 60.109 55.000 0.00 0.00 36.67 3.41
186 187 1.673033 CGACATTTCCGAGGCTGTCTT 60.673 52.381 0.00 0.00 36.67 3.01
187 188 2.003301 GACATTTCCGAGGCTGTCTTC 58.997 52.381 0.00 0.00 36.07 2.87
188 189 1.339151 ACATTTCCGAGGCTGTCTTCC 60.339 52.381 0.00 0.00 0.00 3.46
189 190 1.065854 CATTTCCGAGGCTGTCTTCCT 60.066 52.381 0.00 0.00 36.46 3.36
190 191 0.608640 TTTCCGAGGCTGTCTTCCTC 59.391 55.000 0.00 0.00 45.12 3.71
191 192 0.251832 TTCCGAGGCTGTCTTCCTCT 60.252 55.000 0.00 0.00 46.11 3.69
192 193 0.251832 TCCGAGGCTGTCTTCCTCTT 60.252 55.000 0.00 0.00 46.11 2.85
193 194 0.174617 CCGAGGCTGTCTTCCTCTTC 59.825 60.000 0.00 0.00 46.11 2.87
194 195 0.179150 CGAGGCTGTCTTCCTCTTCG 60.179 60.000 0.00 0.00 46.11 3.79
195 196 0.174617 GAGGCTGTCTTCCTCTTCGG 59.825 60.000 0.00 0.00 45.13 4.30
196 197 1.219393 GGCTGTCTTCCTCTTCGGG 59.781 63.158 0.00 0.00 0.00 5.14
197 198 1.448717 GCTGTCTTCCTCTTCGGGC 60.449 63.158 0.00 0.00 0.00 6.13
198 199 1.975327 CTGTCTTCCTCTTCGGGCA 59.025 57.895 0.00 0.00 0.00 5.36
199 200 0.390472 CTGTCTTCCTCTTCGGGCAC 60.390 60.000 0.00 0.00 0.00 5.01
200 201 1.118965 TGTCTTCCTCTTCGGGCACA 61.119 55.000 0.00 0.00 0.00 4.57
201 202 0.250513 GTCTTCCTCTTCGGGCACAT 59.749 55.000 0.00 0.00 0.00 3.21
202 203 1.480954 GTCTTCCTCTTCGGGCACATA 59.519 52.381 0.00 0.00 0.00 2.29
203 204 2.093658 GTCTTCCTCTTCGGGCACATAA 60.094 50.000 0.00 0.00 0.00 1.90
204 205 2.771943 TCTTCCTCTTCGGGCACATAAT 59.228 45.455 0.00 0.00 0.00 1.28
205 206 2.910688 TCCTCTTCGGGCACATAATC 57.089 50.000 0.00 0.00 0.00 1.75
206 207 1.068588 TCCTCTTCGGGCACATAATCG 59.931 52.381 0.00 0.00 0.00 3.34
207 208 1.502231 CTCTTCGGGCACATAATCGG 58.498 55.000 0.00 0.00 0.00 4.18
208 209 0.828022 TCTTCGGGCACATAATCGGT 59.172 50.000 0.00 0.00 0.00 4.69
209 210 1.202486 TCTTCGGGCACATAATCGGTC 60.202 52.381 0.00 0.00 0.00 4.79
210 211 0.537653 TTCGGGCACATAATCGGTCA 59.462 50.000 0.00 0.00 0.00 4.02
211 212 0.756294 TCGGGCACATAATCGGTCAT 59.244 50.000 0.00 0.00 0.00 3.06
212 213 1.148310 CGGGCACATAATCGGTCATC 58.852 55.000 0.00 0.00 0.00 2.92
213 214 1.270305 CGGGCACATAATCGGTCATCT 60.270 52.381 0.00 0.00 0.00 2.90
214 215 2.417719 GGGCACATAATCGGTCATCTC 58.582 52.381 0.00 0.00 0.00 2.75
215 216 2.037772 GGGCACATAATCGGTCATCTCT 59.962 50.000 0.00 0.00 0.00 3.10
216 217 3.495100 GGGCACATAATCGGTCATCTCTT 60.495 47.826 0.00 0.00 0.00 2.85
217 218 3.743396 GGCACATAATCGGTCATCTCTTC 59.257 47.826 0.00 0.00 0.00 2.87
218 219 3.426859 GCACATAATCGGTCATCTCTTCG 59.573 47.826 0.00 0.00 0.00 3.79
219 220 4.611943 CACATAATCGGTCATCTCTTCGT 58.388 43.478 0.00 0.00 0.00 3.85
220 221 4.677378 CACATAATCGGTCATCTCTTCGTC 59.323 45.833 0.00 0.00 0.00 4.20
221 222 4.580995 ACATAATCGGTCATCTCTTCGTCT 59.419 41.667 0.00 0.00 0.00 4.18
222 223 3.428746 AATCGGTCATCTCTTCGTCTG 57.571 47.619 0.00 0.00 0.00 3.51
223 224 1.095600 TCGGTCATCTCTTCGTCTGG 58.904 55.000 0.00 0.00 0.00 3.86
224 225 0.811915 CGGTCATCTCTTCGTCTGGT 59.188 55.000 0.00 0.00 0.00 4.00
225 226 1.468224 CGGTCATCTCTTCGTCTGGTG 60.468 57.143 0.00 0.00 0.00 4.17
226 227 1.134965 GGTCATCTCTTCGTCTGGTGG 60.135 57.143 0.00 0.00 0.00 4.61
227 228 0.532573 TCATCTCTTCGTCTGGTGGC 59.467 55.000 0.00 0.00 0.00 5.01
228 229 0.460987 CATCTCTTCGTCTGGTGGCC 60.461 60.000 0.00 0.00 0.00 5.36
229 230 1.617947 ATCTCTTCGTCTGGTGGCCC 61.618 60.000 0.00 0.00 0.00 5.80
230 231 3.316573 CTCTTCGTCTGGTGGCCCC 62.317 68.421 0.00 0.85 0.00 5.80
231 232 3.636231 CTTCGTCTGGTGGCCCCA 61.636 66.667 11.91 11.91 42.51 4.96
232 233 2.933287 TTCGTCTGGTGGCCCCAT 60.933 61.111 12.75 0.00 44.15 4.00
233 234 3.266686 TTCGTCTGGTGGCCCCATG 62.267 63.158 12.75 7.98 44.15 3.66
234 235 4.033776 CGTCTGGTGGCCCCATGT 62.034 66.667 12.75 0.00 44.15 3.21
235 236 2.044946 GTCTGGTGGCCCCATGTC 60.045 66.667 12.75 4.25 44.15 3.06
236 237 3.716195 TCTGGTGGCCCCATGTCG 61.716 66.667 12.75 2.82 44.15 4.35
237 238 4.033776 CTGGTGGCCCCATGTCGT 62.034 66.667 12.75 0.00 44.15 4.34
238 239 3.567579 CTGGTGGCCCCATGTCGTT 62.568 63.158 12.75 0.00 44.15 3.85
239 240 2.191786 CTGGTGGCCCCATGTCGTTA 62.192 60.000 12.75 0.00 44.15 3.18
240 241 1.226262 GGTGGCCCCATGTCGTTAT 59.774 57.895 0.00 0.00 0.00 1.89
241 242 0.395173 GGTGGCCCCATGTCGTTATT 60.395 55.000 0.00 0.00 0.00 1.40
242 243 1.470051 GTGGCCCCATGTCGTTATTT 58.530 50.000 0.00 0.00 0.00 1.40
243 244 1.404035 GTGGCCCCATGTCGTTATTTC 59.596 52.381 0.00 0.00 0.00 2.17
244 245 1.029681 GGCCCCATGTCGTTATTTCC 58.970 55.000 0.00 0.00 0.00 3.13
245 246 1.409661 GGCCCCATGTCGTTATTTCCT 60.410 52.381 0.00 0.00 0.00 3.36
246 247 1.676006 GCCCCATGTCGTTATTTCCTG 59.324 52.381 0.00 0.00 0.00 3.86
247 248 1.676006 CCCCATGTCGTTATTTCCTGC 59.324 52.381 0.00 0.00 0.00 4.85
248 249 1.676006 CCCATGTCGTTATTTCCTGCC 59.324 52.381 0.00 0.00 0.00 4.85
249 250 1.676006 CCATGTCGTTATTTCCTGCCC 59.324 52.381 0.00 0.00 0.00 5.36
250 251 1.676006 CATGTCGTTATTTCCTGCCCC 59.324 52.381 0.00 0.00 0.00 5.80
251 252 0.391927 TGTCGTTATTTCCTGCCCCG 60.392 55.000 0.00 0.00 0.00 5.73
252 253 0.392060 GTCGTTATTTCCTGCCCCGT 60.392 55.000 0.00 0.00 0.00 5.28
253 254 0.108041 TCGTTATTTCCTGCCCCGTC 60.108 55.000 0.00 0.00 0.00 4.79
254 255 1.426041 CGTTATTTCCTGCCCCGTCG 61.426 60.000 0.00 0.00 0.00 5.12
255 256 0.108041 GTTATTTCCTGCCCCGTCGA 60.108 55.000 0.00 0.00 0.00 4.20
256 257 0.108041 TTATTTCCTGCCCCGTCGAC 60.108 55.000 5.18 5.18 0.00 4.20
257 258 2.287457 TATTTCCTGCCCCGTCGACG 62.287 60.000 30.33 30.33 39.44 5.12
264 265 3.138798 CCCCGTCGACGTCCTCAT 61.139 66.667 33.49 0.00 37.74 2.90
265 266 2.408022 CCCGTCGACGTCCTCATC 59.592 66.667 33.49 0.00 37.74 2.92
266 267 2.404186 CCCGTCGACGTCCTCATCA 61.404 63.158 33.49 0.00 37.74 3.07
267 268 1.725557 CCCGTCGACGTCCTCATCAT 61.726 60.000 33.49 0.00 37.74 2.45
268 269 0.317103 CCGTCGACGTCCTCATCATC 60.317 60.000 33.49 0.00 37.74 2.92
269 270 0.377203 CGTCGACGTCCTCATCATCA 59.623 55.000 29.08 0.00 34.11 3.07
270 271 1.002359 CGTCGACGTCCTCATCATCAT 60.002 52.381 29.08 0.00 34.11 2.45
271 272 2.656085 GTCGACGTCCTCATCATCATC 58.344 52.381 10.58 0.00 0.00 2.92
272 273 2.033424 GTCGACGTCCTCATCATCATCA 59.967 50.000 10.58 0.00 0.00 3.07
273 274 2.887152 TCGACGTCCTCATCATCATCAT 59.113 45.455 10.58 0.00 0.00 2.45
274 275 3.057946 TCGACGTCCTCATCATCATCATC 60.058 47.826 10.58 0.00 0.00 2.92
275 276 3.304928 CGACGTCCTCATCATCATCATCA 60.305 47.826 10.58 0.00 0.00 3.07
276 277 4.617762 CGACGTCCTCATCATCATCATCAT 60.618 45.833 10.58 0.00 0.00 2.45
277 278 4.818642 ACGTCCTCATCATCATCATCATC 58.181 43.478 0.00 0.00 0.00 2.92
278 279 4.282703 ACGTCCTCATCATCATCATCATCA 59.717 41.667 0.00 0.00 0.00 3.07
279 280 5.046520 ACGTCCTCATCATCATCATCATCAT 60.047 40.000 0.00 0.00 0.00 2.45
280 281 5.520649 CGTCCTCATCATCATCATCATCATC 59.479 44.000 0.00 0.00 0.00 2.92
281 282 6.407202 GTCCTCATCATCATCATCATCATCA 58.593 40.000 0.00 0.00 0.00 3.07
282 283 7.051000 GTCCTCATCATCATCATCATCATCAT 58.949 38.462 0.00 0.00 0.00 2.45
283 284 7.225734 GTCCTCATCATCATCATCATCATCATC 59.774 40.741 0.00 0.00 0.00 2.92
284 285 7.126421 TCCTCATCATCATCATCATCATCATCT 59.874 37.037 0.00 0.00 0.00 2.90
285 286 7.772757 CCTCATCATCATCATCATCATCATCTT 59.227 37.037 0.00 0.00 0.00 2.40
286 287 8.723942 TCATCATCATCATCATCATCATCTTC 57.276 34.615 0.00 0.00 0.00 2.87
287 288 8.321353 TCATCATCATCATCATCATCATCTTCA 58.679 33.333 0.00 0.00 0.00 3.02
288 289 7.907214 TCATCATCATCATCATCATCTTCAC 57.093 36.000 0.00 0.00 0.00 3.18
289 290 7.680730 TCATCATCATCATCATCATCTTCACT 58.319 34.615 0.00 0.00 0.00 3.41
290 291 8.157476 TCATCATCATCATCATCATCTTCACTT 58.843 33.333 0.00 0.00 0.00 3.16
291 292 9.436957 CATCATCATCATCATCATCTTCACTTA 57.563 33.333 0.00 0.00 0.00 2.24
293 294 9.654663 TCATCATCATCATCATCTTCACTTATC 57.345 33.333 0.00 0.00 0.00 1.75
294 295 8.884726 CATCATCATCATCATCTTCACTTATCC 58.115 37.037 0.00 0.00 0.00 2.59
295 296 7.970102 TCATCATCATCATCTTCACTTATCCA 58.030 34.615 0.00 0.00 0.00 3.41
296 297 7.876582 TCATCATCATCATCTTCACTTATCCAC 59.123 37.037 0.00 0.00 0.00 4.02
297 298 6.528321 TCATCATCATCTTCACTTATCCACC 58.472 40.000 0.00 0.00 0.00 4.61
298 299 4.948847 TCATCATCTTCACTTATCCACCG 58.051 43.478 0.00 0.00 0.00 4.94
299 300 4.649218 TCATCATCTTCACTTATCCACCGA 59.351 41.667 0.00 0.00 0.00 4.69
300 301 4.655762 TCATCTTCACTTATCCACCGAG 57.344 45.455 0.00 0.00 0.00 4.63
301 302 4.023980 TCATCTTCACTTATCCACCGAGT 58.976 43.478 0.00 0.00 0.00 4.18
302 303 5.198207 TCATCTTCACTTATCCACCGAGTA 58.802 41.667 0.00 0.00 0.00 2.59
303 304 5.833667 TCATCTTCACTTATCCACCGAGTAT 59.166 40.000 0.00 0.00 0.00 2.12
304 305 5.515797 TCTTCACTTATCCACCGAGTATG 57.484 43.478 0.00 0.00 0.00 2.39
305 306 4.954202 TCTTCACTTATCCACCGAGTATGT 59.046 41.667 0.00 0.00 0.00 2.29
306 307 4.913335 TCACTTATCCACCGAGTATGTC 57.087 45.455 0.00 0.00 0.00 3.06
307 308 3.635373 TCACTTATCCACCGAGTATGTCC 59.365 47.826 0.00 0.00 0.00 4.02
308 309 3.383505 CACTTATCCACCGAGTATGTCCA 59.616 47.826 0.00 0.00 0.00 4.02
309 310 4.039245 CACTTATCCACCGAGTATGTCCAT 59.961 45.833 0.00 0.00 0.00 3.41
310 311 4.039245 ACTTATCCACCGAGTATGTCCATG 59.961 45.833 0.00 0.00 0.00 3.66
311 312 0.464036 TCCACCGAGTATGTCCATGC 59.536 55.000 0.00 0.00 0.00 4.06
312 313 0.177836 CCACCGAGTATGTCCATGCA 59.822 55.000 0.00 0.00 0.00 3.96
313 314 1.202687 CCACCGAGTATGTCCATGCAT 60.203 52.381 0.00 0.00 0.00 3.96
314 315 1.869132 CACCGAGTATGTCCATGCATG 59.131 52.381 20.19 20.19 0.00 4.06
315 316 1.762370 ACCGAGTATGTCCATGCATGA 59.238 47.619 28.31 8.76 0.00 3.07
316 317 2.170397 ACCGAGTATGTCCATGCATGAA 59.830 45.455 28.31 4.34 0.00 2.57
317 318 3.205338 CCGAGTATGTCCATGCATGAAA 58.795 45.455 28.31 12.72 0.00 2.69
318 319 3.002656 CCGAGTATGTCCATGCATGAAAC 59.997 47.826 28.31 23.08 0.00 2.78
319 320 3.002656 CGAGTATGTCCATGCATGAAACC 59.997 47.826 28.31 12.25 0.00 3.27
320 321 3.947196 GAGTATGTCCATGCATGAAACCA 59.053 43.478 28.31 17.11 0.00 3.67
321 322 4.539726 AGTATGTCCATGCATGAAACCAT 58.460 39.130 28.31 21.83 0.00 3.55
322 323 3.812156 ATGTCCATGCATGAAACCATG 57.188 42.857 28.31 9.32 43.20 3.66
340 341 2.749044 CATGAGCAGGTGCGCCTT 60.749 61.111 18.42 2.21 44.18 4.35
341 342 2.749044 ATGAGCAGGTGCGCCTTG 60.749 61.111 18.42 13.46 44.18 3.61
342 343 3.258228 ATGAGCAGGTGCGCCTTGA 62.258 57.895 18.42 0.00 44.18 3.02
343 344 2.669569 GAGCAGGTGCGCCTTGAA 60.670 61.111 18.42 0.00 44.18 2.69
344 345 2.034687 AGCAGGTGCGCCTTGAAT 59.965 55.556 18.42 0.00 44.18 2.57
345 346 1.589716 GAGCAGGTGCGCCTTGAATT 61.590 55.000 18.42 0.00 44.18 2.17
346 347 1.181098 AGCAGGTGCGCCTTGAATTT 61.181 50.000 18.42 0.00 44.18 1.82
347 348 0.525761 GCAGGTGCGCCTTGAATTTA 59.474 50.000 18.42 0.00 44.18 1.40
348 349 1.732405 GCAGGTGCGCCTTGAATTTAC 60.732 52.381 18.42 0.00 44.18 2.01
349 350 1.135402 CAGGTGCGCCTTGAATTTACC 60.135 52.381 18.42 1.56 44.18 2.85
350 351 0.885196 GGTGCGCCTTGAATTTACCA 59.115 50.000 9.68 0.00 0.00 3.25
351 352 1.402325 GGTGCGCCTTGAATTTACCAC 60.402 52.381 9.68 0.00 0.00 4.16
352 353 0.885196 TGCGCCTTGAATTTACCACC 59.115 50.000 4.18 0.00 0.00 4.61
353 354 0.172578 GCGCCTTGAATTTACCACCC 59.827 55.000 0.00 0.00 0.00 4.61
354 355 1.834188 CGCCTTGAATTTACCACCCT 58.166 50.000 0.00 0.00 0.00 4.34
355 356 1.472480 CGCCTTGAATTTACCACCCTG 59.528 52.381 0.00 0.00 0.00 4.45
356 357 2.802719 GCCTTGAATTTACCACCCTGA 58.197 47.619 0.00 0.00 0.00 3.86
357 358 3.161866 GCCTTGAATTTACCACCCTGAA 58.838 45.455 0.00 0.00 0.00 3.02
358 359 3.576550 GCCTTGAATTTACCACCCTGAAA 59.423 43.478 0.00 0.00 0.00 2.69
359 360 4.321974 GCCTTGAATTTACCACCCTGAAAG 60.322 45.833 0.00 0.00 0.00 2.62
370 371 3.393360 CTGAAAGGGGTCGAGCCT 58.607 61.111 31.09 13.70 37.43 4.58
371 372 1.078848 CTGAAAGGGGTCGAGCCTG 60.079 63.158 31.09 12.02 37.43 4.85
372 373 1.535444 TGAAAGGGGTCGAGCCTGA 60.535 57.895 31.09 4.95 37.43 3.86
373 374 1.079057 GAAAGGGGTCGAGCCTGAC 60.079 63.158 31.09 16.17 38.17 3.51
374 375 1.536662 AAAGGGGTCGAGCCTGACT 60.537 57.895 31.09 18.18 38.91 3.41
375 376 1.545706 AAAGGGGTCGAGCCTGACTC 61.546 60.000 31.09 15.44 42.47 3.36
376 377 2.363147 GGGGTCGAGCCTGACTCT 60.363 66.667 31.09 0.00 43.85 3.24
377 378 1.985116 GGGGTCGAGCCTGACTCTT 60.985 63.158 31.09 0.00 43.85 2.85
378 379 1.513622 GGGTCGAGCCTGACTCTTC 59.486 63.158 26.19 0.00 43.85 2.87
379 380 1.513622 GGTCGAGCCTGACTCTTCC 59.486 63.158 2.39 0.00 43.85 3.46
380 381 0.968393 GGTCGAGCCTGACTCTTCCT 60.968 60.000 2.39 0.00 43.85 3.36
381 382 0.892063 GTCGAGCCTGACTCTTCCTT 59.108 55.000 0.00 0.00 43.85 3.36
382 383 1.273886 GTCGAGCCTGACTCTTCCTTT 59.726 52.381 0.00 0.00 43.85 3.11
383 384 1.273606 TCGAGCCTGACTCTTCCTTTG 59.726 52.381 0.00 0.00 43.85 2.77
384 385 1.447945 GAGCCTGACTCTTCCTTTGC 58.552 55.000 0.00 0.00 42.62 3.68
385 386 0.767375 AGCCTGACTCTTCCTTTGCA 59.233 50.000 0.00 0.00 0.00 4.08
386 387 1.353694 AGCCTGACTCTTCCTTTGCAT 59.646 47.619 0.00 0.00 0.00 3.96
387 388 2.165998 GCCTGACTCTTCCTTTGCATT 58.834 47.619 0.00 0.00 0.00 3.56
388 389 2.560105 GCCTGACTCTTCCTTTGCATTT 59.440 45.455 0.00 0.00 0.00 2.32
389 390 3.006217 GCCTGACTCTTCCTTTGCATTTT 59.994 43.478 0.00 0.00 0.00 1.82
390 391 4.802999 CCTGACTCTTCCTTTGCATTTTC 58.197 43.478 0.00 0.00 0.00 2.29
391 392 4.470462 CTGACTCTTCCTTTGCATTTTCG 58.530 43.478 0.00 0.00 0.00 3.46
392 393 4.133820 TGACTCTTCCTTTGCATTTTCGA 58.866 39.130 0.00 0.00 0.00 3.71
393 394 4.024048 TGACTCTTCCTTTGCATTTTCGAC 60.024 41.667 0.00 0.00 0.00 4.20
394 395 3.882888 ACTCTTCCTTTGCATTTTCGACA 59.117 39.130 0.00 0.00 0.00 4.35
395 396 4.222114 CTCTTCCTTTGCATTTTCGACAC 58.778 43.478 0.00 0.00 0.00 3.67
396 397 2.679355 TCCTTTGCATTTTCGACACG 57.321 45.000 0.00 0.00 0.00 4.49
397 398 1.265635 TCCTTTGCATTTTCGACACGG 59.734 47.619 0.00 0.00 0.00 4.94
398 399 1.265635 CCTTTGCATTTTCGACACGGA 59.734 47.619 0.00 0.00 0.00 4.69
399 400 2.307049 CTTTGCATTTTCGACACGGAC 58.693 47.619 0.00 0.00 0.00 4.79
400 401 1.300481 TTGCATTTTCGACACGGACA 58.700 45.000 0.00 0.00 0.00 4.02
401 402 1.518325 TGCATTTTCGACACGGACAT 58.482 45.000 0.00 0.00 0.00 3.06
402 403 2.689646 TGCATTTTCGACACGGACATA 58.310 42.857 0.00 0.00 0.00 2.29
403 404 3.067833 TGCATTTTCGACACGGACATAA 58.932 40.909 0.00 0.00 0.00 1.90
404 405 3.498777 TGCATTTTCGACACGGACATAAA 59.501 39.130 0.00 0.00 0.00 1.40
405 406 4.023963 TGCATTTTCGACACGGACATAAAA 60.024 37.500 0.00 0.00 0.00 1.52
406 407 4.319901 GCATTTTCGACACGGACATAAAAC 59.680 41.667 0.00 0.00 0.00 2.43
407 408 5.444983 CATTTTCGACACGGACATAAAACA 58.555 37.500 0.00 0.00 0.00 2.83
408 409 5.676532 TTTTCGACACGGACATAAAACAT 57.323 34.783 0.00 0.00 0.00 2.71
409 410 4.914312 TTCGACACGGACATAAAACATC 57.086 40.909 0.00 0.00 0.00 3.06
410 411 3.255725 TCGACACGGACATAAAACATCC 58.744 45.455 0.00 0.00 0.00 3.51
411 412 3.056393 TCGACACGGACATAAAACATCCT 60.056 43.478 0.00 0.00 0.00 3.24
412 413 3.682858 CGACACGGACATAAAACATCCTT 59.317 43.478 0.00 0.00 0.00 3.36
413 414 4.201685 CGACACGGACATAAAACATCCTTC 60.202 45.833 0.00 0.00 0.00 3.46
414 415 4.647611 ACACGGACATAAAACATCCTTCA 58.352 39.130 0.00 0.00 0.00 3.02
415 416 4.695455 ACACGGACATAAAACATCCTTCAG 59.305 41.667 0.00 0.00 0.00 3.02
416 417 4.695455 CACGGACATAAAACATCCTTCAGT 59.305 41.667 0.00 0.00 0.00 3.41
417 418 4.935808 ACGGACATAAAACATCCTTCAGTC 59.064 41.667 0.00 0.00 0.00 3.51
418 419 5.178797 CGGACATAAAACATCCTTCAGTCT 58.821 41.667 0.00 0.00 0.00 3.24
419 420 5.643777 CGGACATAAAACATCCTTCAGTCTT 59.356 40.000 0.00 0.00 0.00 3.01
420 421 6.149474 CGGACATAAAACATCCTTCAGTCTTT 59.851 38.462 0.00 0.00 0.00 2.52
421 422 7.308589 CGGACATAAAACATCCTTCAGTCTTTT 60.309 37.037 0.00 0.00 0.00 2.27
422 423 8.360390 GGACATAAAACATCCTTCAGTCTTTTT 58.640 33.333 0.00 0.00 0.00 1.94
526 533 4.050852 AGTAGCGAGGGGTATAAAAACG 57.949 45.455 0.00 0.00 0.00 3.60
568 575 5.059134 AGTAGTAGCGAGGGGTATAAACT 57.941 43.478 0.00 0.00 0.00 2.66
582 589 2.470196 TAAACTCGCGCTGCTACTAG 57.530 50.000 5.56 0.00 0.00 2.57
594 601 3.323403 GCTGCTACTAGATGGTCTCCAAT 59.677 47.826 0.00 0.00 36.95 3.16
603 610 1.303898 TGGTCTCCAATAATGCCCCA 58.696 50.000 0.00 0.00 0.00 4.96
624 631 4.264442 CCAGGGATAGGCCATAGTAGTAGT 60.264 50.000 5.01 0.00 38.95 2.73
658 666 4.008074 ACCGGCGCTACTACTAAGTATA 57.992 45.455 7.64 0.00 37.57 1.47
734 742 3.182263 CCACACTCCCAACCCCCA 61.182 66.667 0.00 0.00 0.00 4.96
738 746 0.776080 ACACTCCCAACCCCCAATCT 60.776 55.000 0.00 0.00 0.00 2.40
755 768 1.850755 CTACCCCACCCCACCAACT 60.851 63.158 0.00 0.00 0.00 3.16
823 850 3.036959 ATCCCCTCCTCCTCCCGT 61.037 66.667 0.00 0.00 0.00 5.28
1156 1183 3.659089 GATGTGTACAGCGGCCCGT 62.659 63.158 4.45 0.00 0.00 5.28
1209 1242 1.076777 CATGGAGGGCCCGTTCAAT 60.077 57.895 18.44 5.46 37.93 2.57
1461 1523 2.758089 GCTGCATCGGCTTCAGGTG 61.758 63.158 0.00 0.00 41.91 4.00
1499 1564 1.805539 CTGAAGCGCGACGGAATCA 60.806 57.895 12.10 2.96 0.00 2.57
1583 1676 0.906756 CCTTCCTCTGCTCCCTGTCA 60.907 60.000 0.00 0.00 0.00 3.58
1597 1690 1.432514 CTGTCAAAGCAAGCGAGCTA 58.567 50.000 6.37 0.00 45.89 3.32
1823 1916 9.147732 AGGAGAAAAGTTTGATATTTTCCTGTT 57.852 29.630 6.75 0.00 43.34 3.16
1834 1927 8.506168 TGATATTTTCCTGTTATTGGAGACAC 57.494 34.615 0.00 0.00 42.67 3.67
2082 2179 5.250200 AGTTGGACACAGTAGAAACAACAA 58.750 37.500 0.00 0.00 39.18 2.83
2089 2186 5.034152 CACAGTAGAAACAACAAACGCAAT 58.966 37.500 0.00 0.00 0.00 3.56
2122 2220 6.476243 TTCAGTCGGTTAATTTTACTGCTC 57.524 37.500 0.00 0.00 37.94 4.26
2146 2244 3.007614 AGGTGTATCACGTGCCTTACTTT 59.992 43.478 11.67 0.98 34.83 2.66
2150 2248 6.040878 GTGTATCACGTGCCTTACTTTCTAT 58.959 40.000 11.67 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.624674 AAACTGGCGCAACTGGAGGT 62.625 55.000 10.83 0.00 0.00 3.85
4 5 2.336088 CCAAACTGGCGCAACTGG 59.664 61.111 10.83 4.15 0.00 4.00
13 14 0.695347 AAGAGAGGAGGCCAAACTGG 59.305 55.000 5.01 0.00 41.55 4.00
14 15 1.349026 TCAAGAGAGGAGGCCAAACTG 59.651 52.381 5.01 0.00 0.00 3.16
15 16 1.734655 TCAAGAGAGGAGGCCAAACT 58.265 50.000 5.01 0.00 0.00 2.66
16 17 2.431454 CTTCAAGAGAGGAGGCCAAAC 58.569 52.381 5.01 0.00 0.00 2.93
17 18 1.271597 GCTTCAAGAGAGGAGGCCAAA 60.272 52.381 5.01 0.00 31.82 3.28
18 19 0.326264 GCTTCAAGAGAGGAGGCCAA 59.674 55.000 5.01 0.00 31.82 4.52
19 20 0.837691 TGCTTCAAGAGAGGAGGCCA 60.838 55.000 5.01 0.00 36.63 5.36
20 21 0.107752 CTGCTTCAAGAGAGGAGGCC 60.108 60.000 0.00 0.00 36.63 5.19
21 22 0.744057 GCTGCTTCAAGAGAGGAGGC 60.744 60.000 0.00 0.00 37.82 4.70
22 23 0.903942 AGCTGCTTCAAGAGAGGAGG 59.096 55.000 0.00 0.00 0.00 4.30
23 24 1.826720 AGAGCTGCTTCAAGAGAGGAG 59.173 52.381 2.53 0.00 0.00 3.69
24 25 1.549620 CAGAGCTGCTTCAAGAGAGGA 59.450 52.381 2.53 0.00 0.00 3.71
25 26 1.275856 ACAGAGCTGCTTCAAGAGAGG 59.724 52.381 2.53 0.00 0.00 3.69
26 27 2.747396 ACAGAGCTGCTTCAAGAGAG 57.253 50.000 2.53 0.00 0.00 3.20
27 28 2.094286 GCTACAGAGCTGCTTCAAGAGA 60.094 50.000 2.53 0.00 45.98 3.10
28 29 2.270047 GCTACAGAGCTGCTTCAAGAG 58.730 52.381 2.53 0.00 45.98 2.85
29 30 2.376808 GCTACAGAGCTGCTTCAAGA 57.623 50.000 2.53 0.00 45.98 3.02
40 41 4.729458 GCAAGAAGACGACTAGCTACAGAG 60.729 50.000 0.00 0.00 0.00 3.35
41 42 3.127203 GCAAGAAGACGACTAGCTACAGA 59.873 47.826 0.00 0.00 0.00 3.41
42 43 3.430931 GCAAGAAGACGACTAGCTACAG 58.569 50.000 0.00 0.00 0.00 2.74
43 44 2.159558 CGCAAGAAGACGACTAGCTACA 60.160 50.000 0.00 0.00 43.02 2.74
44 45 2.442424 CGCAAGAAGACGACTAGCTAC 58.558 52.381 0.00 0.00 43.02 3.58
45 46 2.826979 CGCAAGAAGACGACTAGCTA 57.173 50.000 0.00 0.00 43.02 3.32
46 47 3.704381 CGCAAGAAGACGACTAGCT 57.296 52.632 0.00 0.00 43.02 3.32
59 60 0.603707 TTGGAGACCTGCTTCGCAAG 60.604 55.000 0.00 0.00 38.41 4.01
60 61 0.884704 GTTGGAGACCTGCTTCGCAA 60.885 55.000 0.00 0.00 38.41 4.85
61 62 1.301716 GTTGGAGACCTGCTTCGCA 60.302 57.895 0.00 0.00 36.92 5.10
62 63 0.674895 ATGTTGGAGACCTGCTTCGC 60.675 55.000 0.00 0.00 0.00 4.70
63 64 1.081892 CATGTTGGAGACCTGCTTCG 58.918 55.000 0.00 0.00 0.00 3.79
64 65 1.808945 CACATGTTGGAGACCTGCTTC 59.191 52.381 0.00 0.00 0.00 3.86
65 66 1.901591 CACATGTTGGAGACCTGCTT 58.098 50.000 0.00 0.00 0.00 3.91
66 67 3.639099 CACATGTTGGAGACCTGCT 57.361 52.632 0.00 0.00 0.00 4.24
75 76 3.061848 GCGGGACCCACATGTTGG 61.062 66.667 14.29 14.29 46.47 3.77
76 77 1.678635 ATGCGGGACCCACATGTTG 60.679 57.895 13.46 0.00 0.00 3.33
77 78 1.678635 CATGCGGGACCCACATGTT 60.679 57.895 27.13 0.44 37.10 2.71
78 79 2.045045 CATGCGGGACCCACATGT 60.045 61.111 27.13 1.17 37.10 3.21
79 80 2.829914 CCATGCGGGACCCACATG 60.830 66.667 28.11 28.11 40.67 3.21
80 81 4.820744 GCCATGCGGGACCCACAT 62.821 66.667 12.15 10.14 40.01 3.21
84 85 4.424711 TTCAGCCATGCGGGACCC 62.425 66.667 0.00 0.00 40.01 4.46
85 86 3.134127 GTTCAGCCATGCGGGACC 61.134 66.667 0.00 0.00 40.01 4.46
86 87 0.392461 TAAGTTCAGCCATGCGGGAC 60.392 55.000 0.00 0.00 40.01 4.46
87 88 0.107703 CTAAGTTCAGCCATGCGGGA 60.108 55.000 0.00 0.00 40.01 5.14
88 89 0.392998 ACTAAGTTCAGCCATGCGGG 60.393 55.000 0.00 0.00 40.85 6.13
89 90 2.205074 CTACTAAGTTCAGCCATGCGG 58.795 52.381 0.00 0.00 0.00 5.69
90 91 1.594862 GCTACTAAGTTCAGCCATGCG 59.405 52.381 0.00 0.00 0.00 4.73
91 92 1.594862 CGCTACTAAGTTCAGCCATGC 59.405 52.381 0.00 0.00 31.43 4.06
92 93 2.860735 GTCGCTACTAAGTTCAGCCATG 59.139 50.000 0.00 0.00 31.43 3.66
93 94 2.479730 CGTCGCTACTAAGTTCAGCCAT 60.480 50.000 0.00 0.00 31.43 4.40
94 95 1.135489 CGTCGCTACTAAGTTCAGCCA 60.135 52.381 0.00 0.00 31.43 4.75
95 96 1.131883 TCGTCGCTACTAAGTTCAGCC 59.868 52.381 0.00 0.00 31.43 4.85
96 97 2.539346 TCGTCGCTACTAAGTTCAGC 57.461 50.000 0.00 0.00 0.00 4.26
97 98 4.337985 TCTTCGTCGCTACTAAGTTCAG 57.662 45.455 3.10 0.00 31.89 3.02
98 99 4.438336 CCATCTTCGTCGCTACTAAGTTCA 60.438 45.833 3.10 0.00 31.89 3.18
99 100 4.036352 CCATCTTCGTCGCTACTAAGTTC 58.964 47.826 3.10 0.00 31.89 3.01
100 101 3.734293 GCCATCTTCGTCGCTACTAAGTT 60.734 47.826 3.10 0.00 31.89 2.66
101 102 2.223525 GCCATCTTCGTCGCTACTAAGT 60.224 50.000 3.10 0.00 31.89 2.24
102 103 2.386249 GCCATCTTCGTCGCTACTAAG 58.614 52.381 0.00 0.00 31.35 2.18
103 104 1.268386 CGCCATCTTCGTCGCTACTAA 60.268 52.381 0.00 0.00 0.00 2.24
104 105 0.306840 CGCCATCTTCGTCGCTACTA 59.693 55.000 0.00 0.00 0.00 1.82
105 106 1.064296 CGCCATCTTCGTCGCTACT 59.936 57.895 0.00 0.00 0.00 2.57
106 107 1.944676 CCGCCATCTTCGTCGCTAC 60.945 63.158 0.00 0.00 0.00 3.58
107 108 2.411701 CCGCCATCTTCGTCGCTA 59.588 61.111 0.00 0.00 0.00 4.26
111 112 3.554692 CACGCCGCCATCTTCGTC 61.555 66.667 0.00 0.00 32.38 4.20
112 113 4.373116 ACACGCCGCCATCTTCGT 62.373 61.111 0.00 0.00 35.35 3.85
113 114 3.554692 GACACGCCGCCATCTTCG 61.555 66.667 0.00 0.00 0.00 3.79
114 115 3.195698 GGACACGCCGCCATCTTC 61.196 66.667 0.00 0.00 0.00 2.87
125 126 1.066114 GAGAAGAAGACGCGGACACG 61.066 60.000 12.47 0.00 44.63 4.49
126 127 0.733223 GGAGAAGAAGACGCGGACAC 60.733 60.000 12.47 0.00 0.00 3.67
127 128 0.894184 AGGAGAAGAAGACGCGGACA 60.894 55.000 12.47 0.00 0.00 4.02
128 129 0.244178 AAGGAGAAGAAGACGCGGAC 59.756 55.000 12.47 3.93 0.00 4.79
129 130 0.243907 CAAGGAGAAGAAGACGCGGA 59.756 55.000 12.47 0.00 0.00 5.54
130 131 0.243907 TCAAGGAGAAGAAGACGCGG 59.756 55.000 12.47 0.00 0.00 6.46
131 132 1.721926 GTTCAAGGAGAAGAAGACGCG 59.278 52.381 3.53 3.53 36.78 6.01
132 133 2.734079 CAGTTCAAGGAGAAGAAGACGC 59.266 50.000 0.00 0.00 36.78 5.19
133 134 2.734079 GCAGTTCAAGGAGAAGAAGACG 59.266 50.000 0.00 0.00 36.78 4.18
134 135 3.070748 GGCAGTTCAAGGAGAAGAAGAC 58.929 50.000 0.00 0.00 36.78 3.01
135 136 2.975489 AGGCAGTTCAAGGAGAAGAAGA 59.025 45.455 0.00 0.00 36.78 2.87
136 137 3.007831 AGAGGCAGTTCAAGGAGAAGAAG 59.992 47.826 0.00 0.00 36.78 2.85
137 138 2.975489 AGAGGCAGTTCAAGGAGAAGAA 59.025 45.455 0.00 0.00 36.78 2.52
138 139 2.614259 AGAGGCAGTTCAAGGAGAAGA 58.386 47.619 0.00 0.00 36.78 2.87
139 140 3.333804 GAAGAGGCAGTTCAAGGAGAAG 58.666 50.000 0.00 0.00 36.78 2.85
140 141 2.289072 CGAAGAGGCAGTTCAAGGAGAA 60.289 50.000 0.00 0.00 0.00 2.87
141 142 1.273606 CGAAGAGGCAGTTCAAGGAGA 59.726 52.381 0.00 0.00 0.00 3.71
142 143 1.719600 CGAAGAGGCAGTTCAAGGAG 58.280 55.000 0.00 0.00 0.00 3.69
143 144 0.320771 GCGAAGAGGCAGTTCAAGGA 60.321 55.000 0.00 0.00 0.00 3.36
144 145 1.301677 GGCGAAGAGGCAGTTCAAGG 61.302 60.000 0.00 0.00 45.92 3.61
145 146 2.166270 GGCGAAGAGGCAGTTCAAG 58.834 57.895 0.00 0.00 45.92 3.02
146 147 4.379174 GGCGAAGAGGCAGTTCAA 57.621 55.556 0.00 0.00 45.92 2.69
159 160 0.527600 CTCGGAAATGTCGATGGCGA 60.528 55.000 0.00 0.00 45.71 5.54
160 161 1.490693 CCTCGGAAATGTCGATGGCG 61.491 60.000 0.00 0.00 36.01 5.69
161 162 1.776034 GCCTCGGAAATGTCGATGGC 61.776 60.000 0.00 0.00 40.58 4.40
162 163 0.179073 AGCCTCGGAAATGTCGATGG 60.179 55.000 0.00 0.00 36.01 3.51
163 164 0.933097 CAGCCTCGGAAATGTCGATG 59.067 55.000 0.00 0.00 36.01 3.84
164 165 0.537188 ACAGCCTCGGAAATGTCGAT 59.463 50.000 0.00 0.00 36.01 3.59
165 166 0.108804 GACAGCCTCGGAAATGTCGA 60.109 55.000 2.40 0.00 33.42 4.20
166 167 0.108615 AGACAGCCTCGGAAATGTCG 60.109 55.000 9.77 0.00 45.25 4.35
167 168 2.003301 GAAGACAGCCTCGGAAATGTC 58.997 52.381 8.19 8.19 41.86 3.06
168 169 1.339151 GGAAGACAGCCTCGGAAATGT 60.339 52.381 0.00 0.00 0.00 2.71
169 170 1.065854 AGGAAGACAGCCTCGGAAATG 60.066 52.381 0.00 0.00 0.00 2.32
170 171 1.208293 GAGGAAGACAGCCTCGGAAAT 59.792 52.381 0.00 0.00 42.22 2.17
171 172 0.608640 GAGGAAGACAGCCTCGGAAA 59.391 55.000 0.00 0.00 42.22 3.13
172 173 2.277858 GAGGAAGACAGCCTCGGAA 58.722 57.895 0.00 0.00 42.22 4.30
173 174 4.019983 GAGGAAGACAGCCTCGGA 57.980 61.111 0.00 0.00 42.22 4.55
177 178 1.261238 CCCGAAGAGGAAGACAGCCT 61.261 60.000 0.00 0.00 45.00 4.58
178 179 1.219393 CCCGAAGAGGAAGACAGCC 59.781 63.158 0.00 0.00 45.00 4.85
179 180 1.448717 GCCCGAAGAGGAAGACAGC 60.449 63.158 0.00 0.00 45.00 4.40
180 181 0.390472 GTGCCCGAAGAGGAAGACAG 60.390 60.000 0.00 0.00 45.00 3.51
181 182 1.118965 TGTGCCCGAAGAGGAAGACA 61.119 55.000 0.00 0.00 45.00 3.41
182 183 0.250513 ATGTGCCCGAAGAGGAAGAC 59.749 55.000 0.00 0.00 45.00 3.01
183 184 1.860641 TATGTGCCCGAAGAGGAAGA 58.139 50.000 0.00 0.00 45.00 2.87
184 185 2.691409 TTATGTGCCCGAAGAGGAAG 57.309 50.000 0.00 0.00 45.00 3.46
185 186 2.483013 CGATTATGTGCCCGAAGAGGAA 60.483 50.000 0.00 0.00 45.00 3.36
186 187 1.068588 CGATTATGTGCCCGAAGAGGA 59.931 52.381 0.00 0.00 45.00 3.71
187 188 1.502231 CGATTATGTGCCCGAAGAGG 58.498 55.000 0.00 0.00 40.63 3.69
188 189 1.202533 ACCGATTATGTGCCCGAAGAG 60.203 52.381 0.00 0.00 0.00 2.85
189 190 0.828022 ACCGATTATGTGCCCGAAGA 59.172 50.000 0.00 0.00 0.00 2.87
190 191 1.217882 GACCGATTATGTGCCCGAAG 58.782 55.000 0.00 0.00 0.00 3.79
191 192 0.537653 TGACCGATTATGTGCCCGAA 59.462 50.000 0.00 0.00 0.00 4.30
192 193 0.756294 ATGACCGATTATGTGCCCGA 59.244 50.000 0.00 0.00 0.00 5.14
193 194 1.148310 GATGACCGATTATGTGCCCG 58.852 55.000 0.00 0.00 0.00 6.13
194 195 2.037772 AGAGATGACCGATTATGTGCCC 59.962 50.000 0.00 0.00 0.00 5.36
195 196 3.393089 AGAGATGACCGATTATGTGCC 57.607 47.619 0.00 0.00 0.00 5.01
196 197 3.426859 CGAAGAGATGACCGATTATGTGC 59.573 47.826 0.00 0.00 0.00 4.57
197 198 4.611943 ACGAAGAGATGACCGATTATGTG 58.388 43.478 0.00 0.00 0.00 3.21
198 199 4.580995 AGACGAAGAGATGACCGATTATGT 59.419 41.667 0.00 0.00 0.00 2.29
199 200 4.914504 CAGACGAAGAGATGACCGATTATG 59.085 45.833 0.00 0.00 0.00 1.90
200 201 4.022762 CCAGACGAAGAGATGACCGATTAT 60.023 45.833 0.00 0.00 0.00 1.28
201 202 3.315470 CCAGACGAAGAGATGACCGATTA 59.685 47.826 0.00 0.00 0.00 1.75
202 203 2.099921 CCAGACGAAGAGATGACCGATT 59.900 50.000 0.00 0.00 0.00 3.34
203 204 1.678627 CCAGACGAAGAGATGACCGAT 59.321 52.381 0.00 0.00 0.00 4.18
204 205 1.095600 CCAGACGAAGAGATGACCGA 58.904 55.000 0.00 0.00 0.00 4.69
205 206 0.811915 ACCAGACGAAGAGATGACCG 59.188 55.000 0.00 0.00 0.00 4.79
206 207 1.134965 CCACCAGACGAAGAGATGACC 60.135 57.143 0.00 0.00 0.00 4.02
207 208 1.737363 GCCACCAGACGAAGAGATGAC 60.737 57.143 0.00 0.00 0.00 3.06
208 209 0.532573 GCCACCAGACGAAGAGATGA 59.467 55.000 0.00 0.00 0.00 2.92
209 210 0.460987 GGCCACCAGACGAAGAGATG 60.461 60.000 0.00 0.00 0.00 2.90
210 211 1.617947 GGGCCACCAGACGAAGAGAT 61.618 60.000 4.39 0.00 36.50 2.75
211 212 2.283529 GGGCCACCAGACGAAGAGA 61.284 63.158 4.39 0.00 36.50 3.10
212 213 2.266055 GGGCCACCAGACGAAGAG 59.734 66.667 4.39 0.00 36.50 2.85
213 214 3.319198 GGGGCCACCAGACGAAGA 61.319 66.667 4.39 0.00 39.85 2.87
214 215 3.636231 TGGGGCCACCAGACGAAG 61.636 66.667 0.20 0.00 46.80 3.79
222 223 0.395173 AATAACGACATGGGGCCACC 60.395 55.000 0.20 2.19 40.81 4.61
223 224 1.404035 GAAATAACGACATGGGGCCAC 59.596 52.381 4.39 0.00 0.00 5.01
224 225 1.683629 GGAAATAACGACATGGGGCCA 60.684 52.381 4.39 0.00 0.00 5.36
225 226 1.029681 GGAAATAACGACATGGGGCC 58.970 55.000 0.00 0.00 0.00 5.80
226 227 1.676006 CAGGAAATAACGACATGGGGC 59.324 52.381 0.00 0.00 0.00 5.80
227 228 1.676006 GCAGGAAATAACGACATGGGG 59.324 52.381 0.00 0.00 0.00 4.96
228 229 1.676006 GGCAGGAAATAACGACATGGG 59.324 52.381 0.00 0.00 0.00 4.00
229 230 1.676006 GGGCAGGAAATAACGACATGG 59.324 52.381 0.00 0.00 0.00 3.66
230 231 1.676006 GGGGCAGGAAATAACGACATG 59.324 52.381 0.00 0.00 0.00 3.21
231 232 1.745827 CGGGGCAGGAAATAACGACAT 60.746 52.381 0.00 0.00 0.00 3.06
232 233 0.391927 CGGGGCAGGAAATAACGACA 60.392 55.000 0.00 0.00 0.00 4.35
233 234 0.392060 ACGGGGCAGGAAATAACGAC 60.392 55.000 0.00 0.00 0.00 4.34
234 235 0.108041 GACGGGGCAGGAAATAACGA 60.108 55.000 0.00 0.00 0.00 3.85
235 236 1.426041 CGACGGGGCAGGAAATAACG 61.426 60.000 0.00 0.00 0.00 3.18
236 237 0.108041 TCGACGGGGCAGGAAATAAC 60.108 55.000 0.00 0.00 0.00 1.89
237 238 0.108041 GTCGACGGGGCAGGAAATAA 60.108 55.000 0.00 0.00 0.00 1.40
238 239 1.518774 GTCGACGGGGCAGGAAATA 59.481 57.895 0.00 0.00 0.00 1.40
239 240 2.267961 GTCGACGGGGCAGGAAAT 59.732 61.111 0.00 0.00 0.00 2.17
240 241 4.367023 CGTCGACGGGGCAGGAAA 62.367 66.667 29.70 0.00 35.37 3.13
247 248 3.122250 GATGAGGACGTCGACGGGG 62.122 68.421 37.89 14.82 44.95 5.73
248 249 1.725557 ATGATGAGGACGTCGACGGG 61.726 60.000 37.89 15.57 44.95 5.28
249 250 0.317103 GATGATGAGGACGTCGACGG 60.317 60.000 37.89 21.83 44.95 4.79
250 251 0.377203 TGATGATGAGGACGTCGACG 59.623 55.000 34.58 34.58 46.33 5.12
251 252 2.033424 TGATGATGATGAGGACGTCGAC 59.967 50.000 9.92 5.18 35.04 4.20
252 253 2.297701 TGATGATGATGAGGACGTCGA 58.702 47.619 9.92 0.00 35.04 4.20
253 254 2.781945 TGATGATGATGAGGACGTCG 57.218 50.000 9.92 0.00 35.04 5.12
254 255 4.248691 TGATGATGATGATGAGGACGTC 57.751 45.455 7.13 7.13 0.00 4.34
255 256 4.282703 TGATGATGATGATGATGAGGACGT 59.717 41.667 0.00 0.00 0.00 4.34
256 257 4.817517 TGATGATGATGATGATGAGGACG 58.182 43.478 0.00 0.00 0.00 4.79
257 258 6.407202 TGATGATGATGATGATGATGAGGAC 58.593 40.000 0.00 0.00 0.00 3.85
258 259 6.620877 TGATGATGATGATGATGATGAGGA 57.379 37.500 0.00 0.00 0.00 3.71
259 260 7.278875 AGATGATGATGATGATGATGATGAGG 58.721 38.462 0.00 0.00 0.00 3.86
260 261 8.729805 AAGATGATGATGATGATGATGATGAG 57.270 34.615 0.00 0.00 0.00 2.90
261 262 8.321353 TGAAGATGATGATGATGATGATGATGA 58.679 33.333 0.00 0.00 0.00 2.92
262 263 8.394121 GTGAAGATGATGATGATGATGATGATG 58.606 37.037 0.00 0.00 0.00 3.07
263 264 8.325046 AGTGAAGATGATGATGATGATGATGAT 58.675 33.333 0.00 0.00 0.00 2.45
264 265 7.680730 AGTGAAGATGATGATGATGATGATGA 58.319 34.615 0.00 0.00 0.00 2.92
265 266 7.913674 AGTGAAGATGATGATGATGATGATG 57.086 36.000 0.00 0.00 0.00 3.07
267 268 9.654663 GATAAGTGAAGATGATGATGATGATGA 57.345 33.333 0.00 0.00 0.00 2.92
268 269 8.884726 GGATAAGTGAAGATGATGATGATGATG 58.115 37.037 0.00 0.00 0.00 3.07
269 270 8.603304 TGGATAAGTGAAGATGATGATGATGAT 58.397 33.333 0.00 0.00 0.00 2.45
270 271 7.876582 GTGGATAAGTGAAGATGATGATGATGA 59.123 37.037 0.00 0.00 0.00 2.92
271 272 7.119407 GGTGGATAAGTGAAGATGATGATGATG 59.881 40.741 0.00 0.00 0.00 3.07
272 273 7.166851 GGTGGATAAGTGAAGATGATGATGAT 58.833 38.462 0.00 0.00 0.00 2.45
273 274 6.528321 GGTGGATAAGTGAAGATGATGATGA 58.472 40.000 0.00 0.00 0.00 2.92
274 275 5.407691 CGGTGGATAAGTGAAGATGATGATG 59.592 44.000 0.00 0.00 0.00 3.07
275 276 5.305386 TCGGTGGATAAGTGAAGATGATGAT 59.695 40.000 0.00 0.00 0.00 2.45
276 277 4.649218 TCGGTGGATAAGTGAAGATGATGA 59.351 41.667 0.00 0.00 0.00 2.92
277 278 4.948847 TCGGTGGATAAGTGAAGATGATG 58.051 43.478 0.00 0.00 0.00 3.07
278 279 4.651503 ACTCGGTGGATAAGTGAAGATGAT 59.348 41.667 0.00 0.00 0.00 2.45
279 280 4.023980 ACTCGGTGGATAAGTGAAGATGA 58.976 43.478 0.00 0.00 0.00 2.92
280 281 4.392921 ACTCGGTGGATAAGTGAAGATG 57.607 45.455 0.00 0.00 0.00 2.90
281 282 5.598830 ACATACTCGGTGGATAAGTGAAGAT 59.401 40.000 0.00 0.00 0.00 2.40
282 283 4.954202 ACATACTCGGTGGATAAGTGAAGA 59.046 41.667 0.00 0.00 0.00 2.87
283 284 5.263968 ACATACTCGGTGGATAAGTGAAG 57.736 43.478 0.00 0.00 0.00 3.02
284 285 4.098960 GGACATACTCGGTGGATAAGTGAA 59.901 45.833 0.00 0.00 0.00 3.18
285 286 3.635373 GGACATACTCGGTGGATAAGTGA 59.365 47.826 0.00 0.00 0.00 3.41
286 287 3.383505 TGGACATACTCGGTGGATAAGTG 59.616 47.826 0.00 0.00 0.00 3.16
287 288 3.638860 TGGACATACTCGGTGGATAAGT 58.361 45.455 0.00 0.00 0.00 2.24
288 289 4.560128 CATGGACATACTCGGTGGATAAG 58.440 47.826 0.00 0.00 0.00 1.73
289 290 3.244078 GCATGGACATACTCGGTGGATAA 60.244 47.826 0.00 0.00 0.00 1.75
290 291 2.299013 GCATGGACATACTCGGTGGATA 59.701 50.000 0.00 0.00 0.00 2.59
291 292 1.070758 GCATGGACATACTCGGTGGAT 59.929 52.381 0.00 0.00 0.00 3.41
292 293 0.464036 GCATGGACATACTCGGTGGA 59.536 55.000 0.00 0.00 0.00 4.02
293 294 0.177836 TGCATGGACATACTCGGTGG 59.822 55.000 0.00 0.00 0.00 4.61
294 295 1.869132 CATGCATGGACATACTCGGTG 59.131 52.381 19.40 0.00 0.00 4.94
295 296 1.762370 TCATGCATGGACATACTCGGT 59.238 47.619 25.97 0.00 0.00 4.69
296 297 2.531522 TCATGCATGGACATACTCGG 57.468 50.000 25.97 0.00 0.00 4.63
297 298 3.002656 GGTTTCATGCATGGACATACTCG 59.997 47.826 25.97 0.00 0.00 4.18
298 299 3.947196 TGGTTTCATGCATGGACATACTC 59.053 43.478 25.97 11.93 0.00 2.59
299 300 3.966979 TGGTTTCATGCATGGACATACT 58.033 40.909 25.97 0.00 0.00 2.12
300 301 4.613944 CATGGTTTCATGCATGGACATAC 58.386 43.478 25.97 12.90 43.44 2.39
301 302 4.922471 CATGGTTTCATGCATGGACATA 57.078 40.909 25.97 16.41 43.44 2.29
302 303 3.812156 CATGGTTTCATGCATGGACAT 57.188 42.857 25.97 19.76 43.44 3.06
331 332 0.885196 TGGTAAATTCAAGGCGCACC 59.115 50.000 10.83 5.12 0.00 5.01
332 333 1.402325 GGTGGTAAATTCAAGGCGCAC 60.402 52.381 10.83 0.00 0.00 5.34
333 334 0.885196 GGTGGTAAATTCAAGGCGCA 59.115 50.000 10.83 0.00 0.00 6.09
334 335 0.172578 GGGTGGTAAATTCAAGGCGC 59.827 55.000 0.00 0.00 0.00 6.53
335 336 1.472480 CAGGGTGGTAAATTCAAGGCG 59.528 52.381 0.00 0.00 0.00 5.52
336 337 2.802719 TCAGGGTGGTAAATTCAAGGC 58.197 47.619 0.00 0.00 0.00 4.35
337 338 4.220602 CCTTTCAGGGTGGTAAATTCAAGG 59.779 45.833 0.00 0.00 0.00 3.61
338 339 5.391312 CCTTTCAGGGTGGTAAATTCAAG 57.609 43.478 0.00 0.00 0.00 3.02
352 353 2.269241 GGCTCGACCCCTTTCAGG 59.731 66.667 0.00 0.00 34.30 3.86
353 354 1.078848 CAGGCTCGACCCCTTTCAG 60.079 63.158 0.00 0.00 40.58 3.02
354 355 1.535444 TCAGGCTCGACCCCTTTCA 60.535 57.895 0.00 0.00 40.58 2.69
355 356 1.079057 GTCAGGCTCGACCCCTTTC 60.079 63.158 0.00 0.00 40.58 2.62
356 357 1.536662 AGTCAGGCTCGACCCCTTT 60.537 57.895 11.72 0.00 40.58 3.11
357 358 1.985116 GAGTCAGGCTCGACCCCTT 60.985 63.158 11.72 0.00 40.58 3.95
358 359 2.363147 GAGTCAGGCTCGACCCCT 60.363 66.667 11.72 0.00 40.58 4.79
365 366 1.271054 TGCAAAGGAAGAGTCAGGCTC 60.271 52.381 0.00 0.00 44.45 4.70
366 367 0.767375 TGCAAAGGAAGAGTCAGGCT 59.233 50.000 0.00 0.00 0.00 4.58
367 368 1.831580 ATGCAAAGGAAGAGTCAGGC 58.168 50.000 0.00 0.00 0.00 4.85
368 369 4.614535 CGAAAATGCAAAGGAAGAGTCAGG 60.615 45.833 0.00 0.00 0.00 3.86
369 370 4.214119 TCGAAAATGCAAAGGAAGAGTCAG 59.786 41.667 0.00 0.00 0.00 3.51
370 371 4.024048 GTCGAAAATGCAAAGGAAGAGTCA 60.024 41.667 0.00 0.00 0.00 3.41
371 372 4.024048 TGTCGAAAATGCAAAGGAAGAGTC 60.024 41.667 0.00 0.00 0.00 3.36
372 373 3.882888 TGTCGAAAATGCAAAGGAAGAGT 59.117 39.130 0.00 0.00 0.00 3.24
373 374 4.222114 GTGTCGAAAATGCAAAGGAAGAG 58.778 43.478 0.00 0.00 0.00 2.85
374 375 3.303725 CGTGTCGAAAATGCAAAGGAAGA 60.304 43.478 0.00 0.00 0.00 2.87
375 376 2.973224 CGTGTCGAAAATGCAAAGGAAG 59.027 45.455 0.00 0.00 0.00 3.46
376 377 2.287308 CCGTGTCGAAAATGCAAAGGAA 60.287 45.455 0.00 0.00 0.00 3.36
377 378 1.265635 CCGTGTCGAAAATGCAAAGGA 59.734 47.619 0.00 0.00 0.00 3.36
378 379 1.265635 TCCGTGTCGAAAATGCAAAGG 59.734 47.619 0.00 0.00 0.00 3.11
379 380 2.286713 TGTCCGTGTCGAAAATGCAAAG 60.287 45.455 0.00 0.00 0.00 2.77
380 381 1.671328 TGTCCGTGTCGAAAATGCAAA 59.329 42.857 0.00 0.00 0.00 3.68
381 382 1.300481 TGTCCGTGTCGAAAATGCAA 58.700 45.000 0.00 0.00 0.00 4.08
382 383 1.518325 ATGTCCGTGTCGAAAATGCA 58.482 45.000 0.00 0.00 0.00 3.96
383 384 3.733024 TTATGTCCGTGTCGAAAATGC 57.267 42.857 0.00 0.00 0.00 3.56
384 385 5.444983 TGTTTTATGTCCGTGTCGAAAATG 58.555 37.500 0.00 0.00 0.00 2.32
385 386 5.676532 TGTTTTATGTCCGTGTCGAAAAT 57.323 34.783 0.00 0.00 0.00 1.82
386 387 5.334260 GGATGTTTTATGTCCGTGTCGAAAA 60.334 40.000 0.00 0.00 0.00 2.29
387 388 4.152759 GGATGTTTTATGTCCGTGTCGAAA 59.847 41.667 0.00 0.00 0.00 3.46
388 389 3.680937 GGATGTTTTATGTCCGTGTCGAA 59.319 43.478 0.00 0.00 0.00 3.71
389 390 3.056393 AGGATGTTTTATGTCCGTGTCGA 60.056 43.478 0.00 0.00 37.12 4.20
390 391 3.259064 AGGATGTTTTATGTCCGTGTCG 58.741 45.455 0.00 0.00 37.12 4.35
391 392 4.693566 TGAAGGATGTTTTATGTCCGTGTC 59.306 41.667 0.00 0.00 37.12 3.67
392 393 4.647611 TGAAGGATGTTTTATGTCCGTGT 58.352 39.130 0.00 0.00 37.12 4.49
393 394 4.695455 ACTGAAGGATGTTTTATGTCCGTG 59.305 41.667 0.00 0.00 37.12 4.94
394 395 4.906618 ACTGAAGGATGTTTTATGTCCGT 58.093 39.130 0.00 0.00 37.12 4.69
395 396 5.178797 AGACTGAAGGATGTTTTATGTCCG 58.821 41.667 0.00 0.00 37.12 4.79
396 397 7.454260 AAAGACTGAAGGATGTTTTATGTCC 57.546 36.000 0.00 0.00 0.00 4.02
419 420 9.599866 CCTAGTAGTGATGACATGTATGAAAAA 57.400 33.333 0.00 0.00 0.00 1.94
420 421 8.204160 CCCTAGTAGTGATGACATGTATGAAAA 58.796 37.037 0.00 0.00 0.00 2.29
421 422 7.563556 TCCCTAGTAGTGATGACATGTATGAAA 59.436 37.037 0.00 0.00 0.00 2.69
422 423 7.066781 TCCCTAGTAGTGATGACATGTATGAA 58.933 38.462 0.00 0.00 0.00 2.57
423 424 6.610830 TCCCTAGTAGTGATGACATGTATGA 58.389 40.000 0.00 0.00 0.00 2.15
424 425 6.901081 TCCCTAGTAGTGATGACATGTATG 57.099 41.667 0.00 0.00 0.00 2.39
425 426 7.914427 TTTCCCTAGTAGTGATGACATGTAT 57.086 36.000 0.00 0.00 0.00 2.29
426 427 7.364408 GGTTTTCCCTAGTAGTGATGACATGTA 60.364 40.741 0.00 0.00 0.00 2.29
427 428 6.407202 GTTTTCCCTAGTAGTGATGACATGT 58.593 40.000 0.00 0.00 0.00 3.21
428 429 5.817816 GGTTTTCCCTAGTAGTGATGACATG 59.182 44.000 0.00 0.00 0.00 3.21
429 430 5.726793 AGGTTTTCCCTAGTAGTGATGACAT 59.273 40.000 0.00 0.00 43.87 3.06
430 431 5.091552 AGGTTTTCCCTAGTAGTGATGACA 58.908 41.667 0.00 0.00 43.87 3.58
431 432 5.678955 AGGTTTTCCCTAGTAGTGATGAC 57.321 43.478 0.00 0.00 43.87 3.06
432 433 7.989947 ATAAGGTTTTCCCTAGTAGTGATGA 57.010 36.000 0.00 0.00 45.47 2.92
433 434 7.866393 CGTATAAGGTTTTCCCTAGTAGTGATG 59.134 40.741 0.00 0.00 45.47 3.07
434 435 7.562821 ACGTATAAGGTTTTCCCTAGTAGTGAT 59.437 37.037 0.00 0.00 45.47 3.06
526 533 5.435820 ACTATCAACTTAGTAGTAGCGCC 57.564 43.478 2.29 0.00 33.17 6.53
568 575 1.101635 ACCATCTAGTAGCAGCGCGA 61.102 55.000 12.10 0.00 0.00 5.87
582 589 2.158475 TGGGGCATTATTGGAGACCATC 60.158 50.000 0.00 0.00 31.53 3.51
594 601 1.140134 GGCCTATCCCTGGGGCATTA 61.140 60.000 14.00 0.00 46.56 1.90
603 610 4.606697 TCACTACTACTATGGCCTATCCCT 59.393 45.833 3.32 0.00 0.00 4.20
624 631 1.073548 GCCGGTTTTGTACCCCTCA 59.926 57.895 1.90 0.00 44.70 3.86
658 666 3.819902 GGTCTTACCTGCGCTACTACTAT 59.180 47.826 9.73 0.00 34.73 2.12
734 742 0.478789 TTGGTGGGGTGGGGTAGATT 60.479 55.000 0.00 0.00 0.00 2.40
738 746 2.157452 CAGTTGGTGGGGTGGGGTA 61.157 63.158 0.00 0.00 0.00 3.69
755 768 2.920912 GGGTGGAGTGGGACGACA 60.921 66.667 0.00 0.00 0.00 4.35
797 821 0.113385 GAGGAGGGGATCTGGATCGA 59.887 60.000 4.75 0.00 38.69 3.59
837 864 2.943978 CGGAAGAAGGGCGACTGGT 61.944 63.158 0.00 0.00 0.00 4.00
1156 1183 2.224769 GGAACTTGAAGACACCCATGGA 60.225 50.000 15.22 0.00 0.00 3.41
1243 1276 2.027625 GGAAGACACGGACGCCAAG 61.028 63.158 0.00 0.00 0.00 3.61
1245 1278 2.579657 ATGGAAGACACGGACGCCA 61.580 57.895 0.00 0.00 0.00 5.69
1461 1523 0.689080 TCTCCTCTCATCACAGGGCC 60.689 60.000 0.00 0.00 0.00 5.80
1499 1564 4.339247 AGCTAGTGACAAGCATGTTTTGTT 59.661 37.500 15.67 6.29 42.62 2.83
1583 1676 2.216898 GATCCATAGCTCGCTTGCTTT 58.783 47.619 5.67 0.00 43.74 3.51
1597 1690 1.697297 GTTGTGGGGGTGGATCCAT 59.303 57.895 19.62 0.00 38.11 3.41
1823 1916 8.160765 TGTCAAATTTTCCTAGTGTCTCCAATA 58.839 33.333 0.00 0.00 0.00 1.90
1834 1927 4.215399 TCCGCAAGTGTCAAATTTTCCTAG 59.785 41.667 0.00 0.00 0.00 3.02
2082 2179 5.186996 ACTGAATCAAGTCAAATTGCGTT 57.813 34.783 0.00 0.00 0.00 4.84
2089 2186 7.504924 AATTAACCGACTGAATCAAGTCAAA 57.495 32.000 11.37 3.39 45.77 2.69
2122 2220 2.961526 AAGGCACGTGATACACCTAG 57.038 50.000 22.23 0.00 0.00 3.02
2146 2244 5.137551 TGTCGGTGATGATCCAACTATAGA 58.862 41.667 6.78 0.00 0.00 1.98
2150 2248 3.096852 ACTGTCGGTGATGATCCAACTA 58.903 45.455 0.00 0.00 0.00 2.24
2189 2287 1.402968 CGCTACTGCTGCATCCAAATT 59.597 47.619 1.31 0.00 36.97 1.82
2216 2315 1.097547 GGCTGATGTTGATGTCCCCG 61.098 60.000 0.00 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.