AutoCloner

Multiple sequence alignment - TraesCS3B01G038200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G038200	chr3B	100.000	2429	0	0	1	2429	18468468	18470896	0.000000e+00	4486.0
1	TraesCS3B01G038200	chr3B	87.592	2321	179	47	59	2295	18392873	18395168	0.000000e+00	2590.0
2	TraesCS3B01G038200	chr3B	82.940	1694	193	31	130	1759	18431015	18432676	0.000000e+00	1439.0
3	TraesCS3B01G038200	chr3B	81.199	1702	208	57	796	2426	18426612	18428272	0.000000e+00	1267.0
4	TraesCS3B01G038200	chr3B	86.207	870	76	24	642	1474	18484265	18485127	0.000000e+00	902.0
5	TraesCS3B01G038200	chr3B	93.737	495	27	2	1933	2426	18432668	18433159	0.000000e+00	739.0
6	TraesCS3B01G038200	chr3B	99.709	344	1	0	2086	2429	18459210	18459553	4.410000e-177	630.0
7	TraesCS3B01G038200	chr3B	81.179	797	84	29	56	831	18551452	18552203	4.500000e-162	580.0
8	TraesCS3B01G038200	chr3B	82.840	169	27	2	195	363	111933970	111934136	1.500000e-32	150.0
9	TraesCS3B01G038200	chr3D	85.276	2479	208	62	59	2426	12740326	12742758	0.000000e+00	2410.0
10	TraesCS3B01G038200	chr3D	86.303	1964	184	42	500	2407	12835224	12837158	0.000000e+00	2058.0
11	TraesCS3B01G038200	chr3D	89.988	1618	88	19	859	2423	12841094	12842690	0.000000e+00	2023.0
12	TraesCS3B01G038200	chr3D	88.425	1460	103	23	1000	2426	12828851	12830277	0.000000e+00	1700.0
13	TraesCS3B01G038200	chr3D	84.419	783	90	17	59	815	12828056	12828832	0.000000e+00	741.0
14	TraesCS3B01G038200	chr3D	89.200	500	49	3	980	1474	12848470	12848969	9.540000e-174	619.0
15	TraesCS3B01G038200	chr3D	86.515	482	54	5	503	983	12847971	12848442	9.950000e-144	520.0
16	TraesCS3B01G038200	chr3D	82.852	554	85	8	1726	2275	12825293	12825840	2.810000e-134	488.0
17	TraesCS3B01G038200	chr3D	84.375	288	24	10	268	536	12834612	12834897	1.850000e-66	263.0
18	TraesCS3B01G038200	chr3D	84.874	238	16	9	268	485	12838298	12838535	3.140000e-54	222.0
19	TraesCS3B01G038200	chr3D	75.000	240	45	14	394	625	80216139	80216371	1.990000e-16	97.1
20	TraesCS3B01G038200	chr3A	84.508	1362	160	29	1101	2425	24529448	24528101	0.000000e+00	1299.0
21	TraesCS3B01G038200	chr3A	87.839	995	71	26	980	1937	24559797	24558816	0.000000e+00	1122.0
22	TraesCS3B01G038200	chr3A	85.132	834	98	12	59	874	24560714	24559889	0.000000e+00	830.0
23	TraesCS3B01G038200	chr3A	87.654	243	25	4	2187	2426	24546234	24545994	6.610000e-71	278.0
24	TraesCS3B01G038200	chr3A	100.000	44	0	0	942	985	24559863	24559820	5.570000e-12	82.4
25	TraesCS3B01G038200	chrUn	78.125	288	51	10	394	675	250033831	250034112	3.210000e-39	172.0
26	TraesCS3B01G038200	chr6D	81.106	217	40	1	150	366	144486661	144486876	3.210000e-39	172.0
27	TraesCS3B01G038200	chr2B	79.717	212	40	3	156	366	785934119	785933910	1.500000e-32	150.0
28	TraesCS3B01G038200	chr6A	76.871	294	48	15	384	671	86319261	86319540	5.410000e-32	148.0
29	TraesCS3B01G038200	chr6A	82.119	151	22	4	382	528	18451812	18451663	9.120000e-25	124.0
30	TraesCS3B01G038200	chr5D	80.469	128	16	4	1500	1620	23010722	23010597	3.330000e-14	89.8
31	TraesCS3B01G038200	chr5B	78.462	130	14	8	1502	1619	16174350	16174477	3.350000e-09	73.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G038200	chr3B	18468468	18470896	2428	False	4486.000000	4486	100.000000	1	2429	1	chr3B.!!$F3	2428
1	TraesCS3B01G038200	chr3B	18392873	18395168	2295	False	2590.000000	2590	87.592000	59	2295	1	chr3B.!!$F1	2236
2	TraesCS3B01G038200	chr3B	18426612	18433159	6547	False	1148.333333	1439	85.958667	130	2426	3	chr3B.!!$F7	2296
3	TraesCS3B01G038200	chr3B	18484265	18485127	862	False	902.000000	902	86.207000	642	1474	1	chr3B.!!$F4	832
4	TraesCS3B01G038200	chr3B	18551452	18552203	751	False	580.000000	580	81.179000	56	831	1	chr3B.!!$F5	775
5	TraesCS3B01G038200	chr3D	12740326	12742758	2432	False	2410.000000	2410	85.276000	59	2426	1	chr3D.!!$F1	2367
6	TraesCS3B01G038200	chr3D	12834612	12842690	8078	False	1141.500000	2058	86.385000	268	2423	4	chr3D.!!$F4	2155
7	TraesCS3B01G038200	chr3D	12825293	12830277	4984	False	976.333333	1700	85.232000	59	2426	3	chr3D.!!$F3	2367
8	TraesCS3B01G038200	chr3D	12847971	12848969	998	False	569.500000	619	87.857500	503	1474	2	chr3D.!!$F5	971
9	TraesCS3B01G038200	chr3A	24528101	24529448	1347	True	1299.000000	1299	84.508000	1101	2425	1	chr3A.!!$R1	1324
10	TraesCS3B01G038200	chr3A	24558816	24560714	1898	True	678.133333	1122	90.990333	59	1937	3	chr3A.!!$R3	1878

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
265	4550	0.036164	TGCTTACGCACAGGACCATT	59.964	50.0	0.0	0.0	42.25	3.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1786	12158	0.250124	AAATCTGAACACGTCGGCCA	60.25	50.0	2.24	0.0	31.99	5.36	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
47	48	9.846248	AGAAAATCATTACTTATGTTGAGCAAC	57.154	29.630	6.41	6.41	41.50	4.17
57	58	3.419264	TGTTGAGCAACATGTTGTGTC	57.581	42.857	33.01	28.46	45.42	3.67
84	2790	3.845860	AGTGGGAGAGTCACAGAGTAAA	58.154	45.455	0.00	0.00	37.58	2.01
108	2820	9.762933	AAATAATTTCTTGTGTTGTGTGCTAAT	57.237	25.926	0.00	0.00	0.00	1.73
115	2827	6.264292	TCTTGTGTTGTGTGCTAATTGGTAAT	59.736	34.615	0.00	0.00	0.00	1.89
123	2835	7.165485	TGTGTGCTAATTGGTAATAGTGTTCT	58.835	34.615	0.00	0.00	0.00	3.01
124	2836	8.315482	TGTGTGCTAATTGGTAATAGTGTTCTA	58.685	33.333	0.00	0.00	0.00	2.10
125	2837	8.818057	GTGTGCTAATTGGTAATAGTGTTCTAG	58.182	37.037	0.00	0.00	0.00	2.43
166	4441	3.004839	TCGACGCCCAAAAATCATGAAAA	59.995	39.130	0.00	0.00	0.00	2.29
170	4445	5.303971	ACGCCCAAAAATCATGAAAATTCA	58.696	33.333	0.00	0.00	42.14	2.57
199	4482	0.253347	ATGACATGACCCCCAGAGGT	60.253	55.000	0.00	0.00	45.12	3.85
210	4493	2.225267	CCCCCAGAGGTTGTGGTAAAAT	60.225	50.000	0.00	0.00	32.62	1.82
211	4494	3.010808	CCCCCAGAGGTTGTGGTAAAATA	59.989	47.826	0.00	0.00	32.62	1.40
212	4495	4.325816	CCCCCAGAGGTTGTGGTAAAATAT	60.326	45.833	0.00	0.00	32.62	1.28
245	4530	3.411446	TCGTGGAAGTTTTCATGCAGAT	58.589	40.909	0.00	0.00	0.00	2.90
253	4538	4.726416	AGTTTTCATGCAGATTGCTTACG	58.274	39.130	2.48	0.00	45.31	3.18
254	4539	2.830772	TTCATGCAGATTGCTTACGC	57.169	45.000	2.48	0.00	45.31	4.42
265	4550	0.036164	TGCTTACGCACAGGACCATT	59.964	50.000	0.00	0.00	42.25	3.16
348	4634	5.393678	GCTACTTTGTTGGTTGACCTTGAAA	60.394	40.000	1.34	0.00	36.82	2.69
379	8357	1.952102	CTCAATGTGGCATGTGGGGC	61.952	60.000	0.00	0.00	0.00	5.80
383	8361	0.040942	ATGTGGCATGTGGGGCTTTA	59.959	50.000	0.00	0.00	0.00	1.85
384	8362	0.897863	TGTGGCATGTGGGGCTTTAC	60.898	55.000	0.00	0.00	0.00	2.01
385	8363	0.897863	GTGGCATGTGGGGCTTTACA	60.898	55.000	0.00	0.00	0.00	2.41
413	8407	3.364023	CCGAGAGTGTTCGATTTGTACAC	59.636	47.826	8.89	8.89	46.01	2.90
458	8453	7.968405	GTCGTAATGCTCTCAAATTTTTACCAT	59.032	33.333	0.00	0.00	0.00	3.55
478	8475	7.392766	ACCATTCTACATGGATCCTATGAAA	57.607	36.000	23.03	16.01	41.64	2.69
485	8482	5.579047	ACATGGATCCTATGAAAACACCAA	58.421	37.500	23.03	0.00	0.00	3.67
486	8483	6.015918	ACATGGATCCTATGAAAACACCAAA	58.984	36.000	23.03	0.00	0.00	3.28
540	8890	4.277174	AGTGGTATGTTGAACGAAATTGCA	59.723	37.500	0.00	0.00	0.00	4.08
547	8897	5.771469	TGTTGAACGAAATTGCATTCTGAT	58.229	33.333	0.00	0.00	0.00	2.90
565	8916	4.163458	TCTGATCTTTTTAGTGGCCGGTAT	59.837	41.667	1.90	0.00	0.00	2.73
568	8919	6.597562	TGATCTTTTTAGTGGCCGGTATATT	58.402	36.000	1.90	0.00	0.00	1.28
577	8928	6.429521	AGTGGCCGGTATATTAGTTAATGT	57.570	37.500	1.90	0.00	0.00	2.71
634	8985	6.016777	ACAAATTTGACAGTGAGGCTTCTAAG	60.017	38.462	24.64	0.00	0.00	2.18
702	9054	9.941325	TCATAAAAATTAAATTCAGTGTGGCAT	57.059	25.926	0.00	0.00	0.00	4.40
712	9065	2.522923	TGTGGCATGGGCGGTTTT	60.523	55.556	0.00	0.00	42.47	2.43
727	9080	0.237498	GTTTTCGCTCGGAACCCTTG	59.763	55.000	0.00	0.00	33.42	3.61
784	9564	4.870363	TGTACGTAAAAGCCTTCGTAAGT	58.130	39.130	0.00	0.00	39.74	2.24
1005	11267	3.631686	GCACCTACACATTTATCATGGCA	59.368	43.478	0.00	0.00	0.00	4.92
1022	11284	1.586154	GCAAGCACTACCAATGCCGT	61.586	55.000	0.00	0.00	44.53	5.68
1065	11332	1.400494	GTTTTTCTGCAGGTGTCGTGT	59.600	47.619	15.13	0.00	0.00	4.49
1491	11791	1.293924	GGCTGGTGATGATGAGTTCG	58.706	55.000	0.00	0.00	0.00	3.95
1492	11792	1.406069	GGCTGGTGATGATGAGTTCGT	60.406	52.381	0.00	0.00	0.00	3.85
1529	11829	7.595130	GGATCGAGTTATTTGCTTTCAAGTTTT	59.405	33.333	0.00	0.00	33.12	2.43
1609	11913	0.680618	TTTGCCCGACCGTCTAAGAA	59.319	50.000	0.00	0.00	0.00	2.52
1748	12120	1.614051	CCCCTTTGAGCACTGCATACA	60.614	52.381	3.30	0.00	0.00	2.29
1750	12122	2.756760	CCCTTTGAGCACTGCATACATT	59.243	45.455	3.30	0.00	0.00	2.71
1774	12146	3.763097	CATCTCGTGCCTTAAAATGCA	57.237	42.857	0.00	0.00	34.54	3.96
1786	12158	2.818130	AAAATGCATGCAAACGTCCT	57.182	40.000	26.68	2.56	0.00	3.85
1807	12180	1.399727	GGCCGACGTGTTCAGATTTTG	60.400	52.381	0.00	0.00	0.00	2.44
1908	12312	2.358247	TTTGCGAGAAGGGGCGAC	60.358	61.111	0.00	0.00	0.00	5.19
1951	12355	3.008594	TCGAGGGCTTCTTGGACAATAAA	59.991	43.478	0.00	0.00	0.00	1.40
1955	12359	3.129462	GGGCTTCTTGGACAATAAAGAGC	59.871	47.826	9.96	0.00	34.09	4.09
2144	12553	4.099419	AGAGGAAACCAAAATGTTGACCAC	59.901	41.667	0.00	0.00	36.83	4.16
2158	12567	0.741221	GACCACCAAGATGGACGAGC	60.741	60.000	2.85	0.00	43.02	5.03
2173	12582	1.596477	GAGCTGGATCCCGATGTGC	60.596	63.158	9.90	4.22	0.00	4.57
2328	12737	4.514066	ACAATTTACACGGACCTGAACTTC	59.486	41.667	0.00	0.00	0.00	3.01
2350	12759	4.826733	TCTATGATTGGGCGCATGTAAAAT	59.173	37.500	10.83	0.00	0.00	1.82

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	9.624697	TGTTGCTCAACATAAGTAATGATTTTC	57.375	29.630	11.03	0.00	45.42	2.29
38	39	2.223249	ACGACACAACATGTTGCTCAAC	60.223	45.455	33.23	20.06	45.64	3.18
39	40	2.013400	ACGACACAACATGTTGCTCAA	58.987	42.857	33.23	0.00	45.64	3.02
41	42	3.870723	TTACGACACAACATGTTGCTC	57.129	42.857	33.23	25.82	45.64	4.26
44	45	5.390461	CCCACTATTACGACACAACATGTTG	60.390	44.000	32.03	32.03	46.95	3.33
47	48	4.500127	TCCCACTATTACGACACAACATG	58.500	43.478	0.00	0.00	0.00	3.21
48	49	4.464951	TCTCCCACTATTACGACACAACAT	59.535	41.667	0.00	0.00	0.00	2.71
50	51	4.082354	ACTCTCCCACTATTACGACACAAC	60.082	45.833	0.00	0.00	0.00	3.32
52	53	3.693085	GACTCTCCCACTATTACGACACA	59.307	47.826	0.00	0.00	0.00	3.72
54	55	3.693085	GTGACTCTCCCACTATTACGACA	59.307	47.826	0.00	0.00	0.00	4.35
55	56	3.693085	TGTGACTCTCCCACTATTACGAC	59.307	47.826	0.00	0.00	35.66	4.34
56	57	3.945921	CTGTGACTCTCCCACTATTACGA	59.054	47.826	0.00	0.00	35.66	3.43
57	58	3.945921	TCTGTGACTCTCCCACTATTACG	59.054	47.826	0.00	0.00	35.66	3.18
84	2790	9.195411	CAATTAGCACACAACACAAGAAATTAT	57.805	29.630	0.00	0.00	0.00	1.28
123	2835	9.967245	CGTCGATTGAATTTTTGAGAATTACTA	57.033	29.630	0.00	0.00	29.75	1.82
124	2836	7.481798	GCGTCGATTGAATTTTTGAGAATTACT	59.518	33.333	0.00	0.00	29.75	2.24
125	2837	7.253321	GGCGTCGATTGAATTTTTGAGAATTAC	60.253	37.037	0.00	0.00	29.75	1.89
146	4421	5.407995	TGAATTTTCATGATTTTTGGGCGTC	59.592	36.000	0.00	0.00	31.01	5.19
212	4495	9.004717	TGAAAACTTCCACGAAACATTATCATA	57.995	29.630	0.00	0.00	0.00	2.15
253	4538	2.479566	TCTCAGAAATGGTCCTGTGC	57.520	50.000	0.00	0.00	0.00	4.57
254	4539	4.645535	TCTTTCTCAGAAATGGTCCTGTG	58.354	43.478	0.00	0.00	0.00	3.66
282	4567	5.071788	ACTTGACATGTTCCCTCTAGAAACA	59.928	40.000	10.18	10.18	0.00	2.83
379	8357	3.834610	ACACTCTCGGACGAATGTAAAG	58.165	45.455	0.00	0.00	0.00	1.85
383	8361	1.401148	CGAACACTCTCGGACGAATGT	60.401	52.381	0.00	0.00	35.14	2.71
384	8362	1.135774	TCGAACACTCTCGGACGAATG	60.136	52.381	0.00	0.00	39.35	2.67
385	8363	1.162698	TCGAACACTCTCGGACGAAT	58.837	50.000	0.00	0.00	39.35	3.34
413	8407	3.418619	CGACAAAAACTTGATGCACTTCG	59.581	43.478	0.00	0.00	0.00	3.79
458	8453	7.054124	GGTGTTTTCATAGGATCCATGTAGAA	58.946	38.462	15.82	7.69	0.00	2.10
478	8475	7.878547	AATTGATGAAAATTGGTTTGGTGTT	57.121	28.000	0.00	0.00	0.00	3.32
485	8482	5.639082	GCTCCGAAATTGATGAAAATTGGTT	59.361	36.000	0.00	0.00	30.21	3.67
486	8483	5.047092	AGCTCCGAAATTGATGAAAATTGGT	60.047	36.000	0.00	0.00	30.21	3.67
540	8890	3.947834	CCGGCCACTAAAAAGATCAGAAT	59.052	43.478	2.24	0.00	0.00	2.40
547	8897	7.128234	ACTAATATACCGGCCACTAAAAAGA	57.872	36.000	0.00	0.00	0.00	2.52
609	8960	4.210331	AGAAGCCTCACTGTCAAATTTGT	58.790	39.130	17.47	0.00	0.00	2.83
621	8972	1.903183	ACAGACCCTTAGAAGCCTCAC	59.097	52.381	0.00	0.00	0.00	3.51
634	8985	8.336801	ACTTTTTCTATGATTAACACAGACCC	57.663	34.615	0.00	0.00	31.30	4.46
675	9026	9.421806	TGCCACACTGAATTTAATTTTTATGAG	57.578	29.630	0.00	0.00	0.00	2.90
689	9040	2.048023	CGCCCATGCCACACTGAAT	61.048	57.895	0.00	0.00	0.00	2.57
712	9065	3.621805	TGCAAGGGTTCCGAGCGA	61.622	61.111	0.00	0.00	32.47	4.93
727	9080	6.370593	TGAGTAAATCACAAAATCGAAGTGC	58.629	36.000	0.00	0.00	31.12	4.40
771	9551	6.002082	ACCAATTCTTTACTTACGAAGGCTT	58.998	36.000	0.00	0.00	0.00	4.35
784	9564	5.939883	CACTCCTGATGTCACCAATTCTTTA	59.060	40.000	0.00	0.00	0.00	1.85
921	11124	7.944061	TGGTTGGAGATTTTCTGCATTATATG	58.056	34.615	0.00	0.00	44.28	1.78
928	11131	3.295093	TGTTGGTTGGAGATTTTCTGCA	58.705	40.909	0.00	0.00	43.20	4.41
929	11132	3.858503	GCTGTTGGTTGGAGATTTTCTGC	60.859	47.826	0.00	0.00	35.21	4.26
930	11133	3.305608	GGCTGTTGGTTGGAGATTTTCTG	60.306	47.826	0.00	0.00	0.00	3.02
933	11136	2.962859	AGGCTGTTGGTTGGAGATTTT	58.037	42.857	0.00	0.00	0.00	1.82
935	11138	2.158475	TCAAGGCTGTTGGTTGGAGATT	60.158	45.455	0.00	0.00	0.00	2.40
936	11139	1.425066	TCAAGGCTGTTGGTTGGAGAT	59.575	47.619	0.00	0.00	0.00	2.75
1005	11267	0.960364	CCACGGCATTGGTAGTGCTT	60.960	55.000	0.00	0.00	42.16	3.91
1022	11284	3.499338	AGGACAATGCAGAAAATCACCA	58.501	40.909	0.00	0.00	0.00	4.17
1257	11525	1.839894	GAGGATGCGGATTCCCCTT	59.160	57.895	0.00	0.00	33.45	3.95
1491	11791	1.068474	CTCGATCCACCGTGAACAAC	58.932	55.000	0.00	0.00	0.00	3.32
1492	11792	0.677288	ACTCGATCCACCGTGAACAA	59.323	50.000	0.00	0.00	0.00	2.83
1529	11829	6.681729	ATCCCAGTTACAGACTTCAAACTA	57.318	37.500	0.00	0.00	36.10	2.24
1609	11913	2.575532	TGCAAACAAGCTACTTCTGCT	58.424	42.857	8.58	0.00	43.32	4.24
1660	12018	7.645402	ACAAACTTACAGTGCTTAATGGTTAC	58.355	34.615	0.00	0.00	0.00	2.50
1661	12019	7.811117	ACAAACTTACAGTGCTTAATGGTTA	57.189	32.000	0.00	0.00	0.00	2.85
1662	12020	6.709018	ACAAACTTACAGTGCTTAATGGTT	57.291	33.333	0.00	0.00	0.00	3.67
1686	12053	8.922676	CACGTTAATCTGAGTTATTACACACTT	58.077	33.333	0.00	0.00	0.00	3.16
1687	12054	8.301720	TCACGTTAATCTGAGTTATTACACACT	58.698	33.333	0.00	0.00	0.00	3.55
1688	12055	8.456904	TCACGTTAATCTGAGTTATTACACAC	57.543	34.615	0.00	0.00	0.00	3.82
1689	12056	9.297586	GATCACGTTAATCTGAGTTATTACACA	57.702	33.333	0.00	0.00	0.00	3.72
1690	12057	9.517609	AGATCACGTTAATCTGAGTTATTACAC	57.482	33.333	8.96	0.00	32.27	2.90
1691	12058	9.731819	GAGATCACGTTAATCTGAGTTATTACA	57.268	33.333	13.53	0.00	33.64	2.41
1692	12059	9.731819	TGAGATCACGTTAATCTGAGTTATTAC	57.268	33.333	13.53	0.00	33.64	1.89
1693	12060	9.952188	CTGAGATCACGTTAATCTGAGTTATTA	57.048	33.333	13.53	0.00	33.64	0.98
1694	12061	7.436673	GCTGAGATCACGTTAATCTGAGTTATT	59.563	37.037	18.94	0.00	36.98	1.40
1695	12062	6.920758	GCTGAGATCACGTTAATCTGAGTTAT	59.079	38.462	18.94	0.00	36.98	1.89
1774	12146	3.055719	CGGCCAGGACGTTTGCAT	61.056	61.111	6.51	0.00	0.00	3.96
1786	12158	0.250124	AAATCTGAACACGTCGGCCA	60.250	50.000	2.24	0.00	31.99	5.36
1908	12312	0.994995	CTTCTGCGTCATCTTGTCCG	59.005	55.000	0.00	0.00	0.00	4.79
1951	12355	1.202348	CGATCGACACATTCCTGCTCT	60.202	52.381	10.26	0.00	0.00	4.09
1955	12359	0.460109	TGGCGATCGACACATTCCTG	60.460	55.000	22.34	0.00	0.00	3.86
2006	12410	1.926511	GCCGCCATGAAGGTGTCAAG	61.927	60.000	0.00	0.00	46.87	3.02
2144	12553	0.467384	ATCCAGCTCGTCCATCTTGG	59.533	55.000	0.00	0.00	39.43	3.61
2158	12567	0.394216	TTTGGCACATCGGGATCCAG	60.394	55.000	15.23	10.32	39.30	3.86
2173	12582	1.737793	GACCGCTTACATGACCTTTGG	59.262	52.381	0.00	0.00	0.00	3.28
2328	12737	4.566545	TTTTACATGCGCCCAATCATAG	57.433	40.909	4.18	0.00	0.00	2.23
2350	12759	6.434596	CAAAACACAACGGATGTTCATTAGA	58.565	36.000	2.26	0.00	41.46	2.10

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.