Multiple sequence alignment - TraesCS3B01G037700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G037700 chr3B 100.000 2432 0 0 1 2432 18305039 18307470 0.000000e+00 4492.0
1 TraesCS3B01G037700 chr3B 86.456 1676 142 43 776 2414 18426612 18428239 0.000000e+00 1759.0
2 TraesCS3B01G037700 chr3B 81.033 1587 230 48 766 2320 18393621 18395168 0.000000e+00 1197.0
3 TraesCS3B01G037700 chr3B 83.817 723 93 13 766 1478 18484414 18485122 0.000000e+00 665.0
4 TraesCS3B01G037700 chr3B 81.546 867 99 36 766 1607 18469253 18470083 0.000000e+00 658.0
5 TraesCS3B01G037700 chr3B 83.469 490 52 10 1931 2414 18552201 18552667 1.730000e-116 429.0
6 TraesCS3B01G037700 chr3D 81.931 1699 215 57 765 2414 12741070 12742725 0.000000e+00 1352.0
7 TraesCS3B01G037700 chr3D 82.790 1441 181 48 996 2413 12828847 12830243 0.000000e+00 1225.0
8 TraesCS3B01G037700 chr3D 80.390 1693 245 59 766 2413 12835493 12837143 0.000000e+00 1206.0
9 TraesCS3B01G037700 chr3D 85.395 671 72 18 1641 2299 12825182 12825838 0.000000e+00 673.0
10 TraesCS3B01G037700 chr3D 82.897 725 97 18 766 1478 12848255 12848964 5.710000e-176 627.0
11 TraesCS3B01G037700 chr3D 81.590 239 26 9 874 1106 12824948 12825174 5.340000e-42 182.0
12 TraesCS3B01G037700 chr3D 94.118 85 5 0 473 557 12824415 12824499 1.960000e-26 130.0
13 TraesCS3B01G037700 chr3A 82.664 1344 178 34 1104 2417 24529448 24528130 0.000000e+00 1140.0
14 TraesCS3B01G037700 chr3A 82.208 1096 132 39 902 1962 24559883 24558816 0.000000e+00 885.0
15 TraesCS3B01G037700 chr3A 86.207 464 58 5 1958 2417 24563376 24562915 4.670000e-137 497.0
16 TraesCS3B01G037700 chr3A 84.127 63 5 3 406 464 60004301 60004362 3.380000e-04 56.5
17 TraesCS3B01G037700 chr5D 78.916 664 95 23 773 1423 23058218 23057587 2.250000e-110 409.0
18 TraesCS3B01G037700 chr5D 75.996 929 140 59 743 1626 23011465 23010575 1.050000e-108 403.0
19 TraesCS3B01G037700 chr5B 78.411 667 93 28 773 1423 16369045 16368414 1.050000e-103 387.0
20 TraesCS3B01G037700 chr5B 77.633 693 114 31 738 1420 16199410 16200071 1.360000e-102 383.0
21 TraesCS3B01G037700 chrUn 79.024 615 79 27 822 1420 312425226 312425806 2.280000e-100 375.0
22 TraesCS3B01G037700 chr4D 83.333 126 16 4 339 463 117693498 117693377 7.110000e-21 111.0
23 TraesCS3B01G037700 chr6D 95.745 47 1 1 407 452 97865770 97865816 9.330000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G037700 chr3B 18305039 18307470 2431 False 4492.0 4492 100.00000 1 2432 1 chr3B.!!$F1 2431
1 TraesCS3B01G037700 chr3B 18426612 18428239 1627 False 1759.0 1759 86.45600 776 2414 1 chr3B.!!$F3 1638
2 TraesCS3B01G037700 chr3B 18393621 18395168 1547 False 1197.0 1197 81.03300 766 2320 1 chr3B.!!$F2 1554
3 TraesCS3B01G037700 chr3B 18484414 18485122 708 False 665.0 665 83.81700 766 1478 1 chr3B.!!$F5 712
4 TraesCS3B01G037700 chr3B 18469253 18470083 830 False 658.0 658 81.54600 766 1607 1 chr3B.!!$F4 841
5 TraesCS3B01G037700 chr3D 12741070 12742725 1655 False 1352.0 1352 81.93100 765 2414 1 chr3D.!!$F1 1649
6 TraesCS3B01G037700 chr3D 12835493 12837143 1650 False 1206.0 1206 80.39000 766 2413 1 chr3D.!!$F2 1647
7 TraesCS3B01G037700 chr3D 12848255 12848964 709 False 627.0 627 82.89700 766 1478 1 chr3D.!!$F3 712
8 TraesCS3B01G037700 chr3D 12824415 12830243 5828 False 552.5 1225 85.97325 473 2413 4 chr3D.!!$F4 1940
9 TraesCS3B01G037700 chr3A 24528130 24529448 1318 True 1140.0 1140 82.66400 1104 2417 1 chr3A.!!$R1 1313
10 TraesCS3B01G037700 chr3A 24558816 24563376 4560 True 691.0 885 84.20750 902 2417 2 chr3A.!!$R2 1515
11 TraesCS3B01G037700 chr5D 23057587 23058218 631 True 409.0 409 78.91600 773 1423 1 chr5D.!!$R2 650
12 TraesCS3B01G037700 chr5D 23010575 23011465 890 True 403.0 403 75.99600 743 1626 1 chr5D.!!$R1 883
13 TraesCS3B01G037700 chr5B 16368414 16369045 631 True 387.0 387 78.41100 773 1423 1 chr5B.!!$R1 650
14 TraesCS3B01G037700 chr5B 16199410 16200071 661 False 383.0 383 77.63300 738 1420 1 chr5B.!!$F1 682
15 TraesCS3B01G037700 chrUn 312425226 312425806 580 False 375.0 375 79.02400 822 1420 1 chrUn.!!$F1 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.030235 TCCGACGTCTGTGAGTGTTG 59.97 55.0 14.7 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2138 8691 0.108585 TTGGTTTCCTCTGAAGCGCT 59.891 50.0 2.64 2.64 32.94 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.861629 TCCAATTCTTAACTGTATGATGAGGT 58.138 34.615 0.00 0.00 0.00 3.85
28 29 7.770433 TCCAATTCTTAACTGTATGATGAGGTG 59.230 37.037 0.00 0.00 0.00 4.00
29 30 7.770433 CCAATTCTTAACTGTATGATGAGGTGA 59.230 37.037 0.00 0.00 0.00 4.02
30 31 8.607459 CAATTCTTAACTGTATGATGAGGTGAC 58.393 37.037 0.00 0.00 0.00 3.67
31 32 6.850752 TCTTAACTGTATGATGAGGTGACA 57.149 37.500 0.00 0.00 0.00 3.58
32 33 7.423844 TCTTAACTGTATGATGAGGTGACAT 57.576 36.000 0.00 0.00 0.00 3.06
33 34 7.267857 TCTTAACTGTATGATGAGGTGACATG 58.732 38.462 0.00 0.00 0.00 3.21
35 36 3.453717 ACTGTATGATGAGGTGACATGCT 59.546 43.478 0.00 0.00 0.00 3.79
36 37 4.080695 ACTGTATGATGAGGTGACATGCTT 60.081 41.667 0.00 0.00 0.00 3.91
37 38 5.129320 ACTGTATGATGAGGTGACATGCTTA 59.871 40.000 0.00 0.00 0.00 3.09
38 39 5.988287 TGTATGATGAGGTGACATGCTTAA 58.012 37.500 0.00 0.00 0.00 1.85
39 40 6.413892 TGTATGATGAGGTGACATGCTTAAA 58.586 36.000 0.00 0.00 0.00 1.52
40 41 6.883756 TGTATGATGAGGTGACATGCTTAAAA 59.116 34.615 0.00 0.00 0.00 1.52
69 70 7.322664 TGATCATTCCCATTTTTAAGTCAAGC 58.677 34.615 0.00 0.00 0.00 4.01
72 73 5.975693 TTCCCATTTTTAAGTCAAGCGAT 57.024 34.783 0.00 0.00 0.00 4.58
73 74 7.338196 TCATTCCCATTTTTAAGTCAAGCGATA 59.662 33.333 0.00 0.00 0.00 2.92
74 75 7.455641 TTCCCATTTTTAAGTCAAGCGATAA 57.544 32.000 0.00 0.00 0.00 1.75
75 76 7.455641 TCCCATTTTTAAGTCAAGCGATAAA 57.544 32.000 0.00 0.00 0.00 1.40
76 77 7.309920 TCCCATTTTTAAGTCAAGCGATAAAC 58.690 34.615 0.00 0.00 0.00 2.01
77 78 7.040340 TCCCATTTTTAAGTCAAGCGATAAACA 60.040 33.333 0.00 0.00 0.00 2.83
79 80 9.139174 CCATTTTTAAGTCAAGCGATAAACAAT 57.861 29.630 0.00 0.00 0.00 2.71
126 127 9.741647 GAAGATTTCATTTGGATAGTCAAATCC 57.258 33.333 0.00 0.00 43.16 3.01
133 134 3.712091 GGATAGTCAAATCCGACGTCT 57.288 47.619 14.70 0.00 40.98 4.18
134 135 3.372954 GGATAGTCAAATCCGACGTCTG 58.627 50.000 14.70 7.40 40.98 3.51
136 137 2.065993 AGTCAAATCCGACGTCTGTG 57.934 50.000 14.70 0.18 40.98 3.66
137 138 1.611977 AGTCAAATCCGACGTCTGTGA 59.388 47.619 14.70 7.83 40.98 3.58
138 139 1.986378 GTCAAATCCGACGTCTGTGAG 59.014 52.381 14.70 0.00 0.00 3.51
141 142 0.959553 AATCCGACGTCTGTGAGTGT 59.040 50.000 14.70 0.00 0.00 3.55
142 143 0.959553 ATCCGACGTCTGTGAGTGTT 59.040 50.000 14.70 0.00 0.00 3.32
143 144 0.030235 TCCGACGTCTGTGAGTGTTG 59.970 55.000 14.70 0.00 0.00 3.33
146 147 1.268589 CGACGTCTGTGAGTGTTGAGT 60.269 52.381 14.70 0.00 0.00 3.41
148 149 3.365064 CGACGTCTGTGAGTGTTGAGTAT 60.365 47.826 14.70 0.00 0.00 2.12
149 150 3.902150 ACGTCTGTGAGTGTTGAGTATG 58.098 45.455 0.00 0.00 0.00 2.39
150 151 3.568430 ACGTCTGTGAGTGTTGAGTATGA 59.432 43.478 0.00 0.00 0.00 2.15
151 152 4.037565 ACGTCTGTGAGTGTTGAGTATGAA 59.962 41.667 0.00 0.00 0.00 2.57
152 153 4.618912 CGTCTGTGAGTGTTGAGTATGAAG 59.381 45.833 0.00 0.00 0.00 3.02
153 154 4.926238 GTCTGTGAGTGTTGAGTATGAAGG 59.074 45.833 0.00 0.00 0.00 3.46
154 155 4.832823 TCTGTGAGTGTTGAGTATGAAGGA 59.167 41.667 0.00 0.00 0.00 3.36
155 156 5.304357 TCTGTGAGTGTTGAGTATGAAGGAA 59.696 40.000 0.00 0.00 0.00 3.36
156 157 5.297547 TGTGAGTGTTGAGTATGAAGGAAC 58.702 41.667 0.00 0.00 0.00 3.62
158 159 4.346709 TGAGTGTTGAGTATGAAGGAACCA 59.653 41.667 0.00 0.00 0.00 3.67
159 160 4.899502 AGTGTTGAGTATGAAGGAACCAG 58.100 43.478 0.00 0.00 0.00 4.00
160 161 4.348168 AGTGTTGAGTATGAAGGAACCAGT 59.652 41.667 0.00 0.00 0.00 4.00
161 162 5.063880 GTGTTGAGTATGAAGGAACCAGTT 58.936 41.667 0.00 0.00 0.00 3.16
162 163 5.179555 GTGTTGAGTATGAAGGAACCAGTTC 59.820 44.000 1.77 1.77 38.80 3.01
205 206 3.639162 CAACTTTTTGGACAGCGCA 57.361 47.368 11.47 0.00 0.00 6.09
207 208 2.053627 CAACTTTTTGGACAGCGCATC 58.946 47.619 11.47 6.66 0.00 3.91
208 209 1.609208 ACTTTTTGGACAGCGCATCT 58.391 45.000 11.47 0.00 0.00 2.90
216 217 2.783275 CAGCGCATCTGTGTCTGC 59.217 61.111 11.47 0.00 38.02 4.26
218 219 1.301953 AGCGCATCTGTGTCTGCAA 60.302 52.632 11.47 0.00 38.30 4.08
220 221 1.572085 GCGCATCTGTGTCTGCAAGT 61.572 55.000 0.30 0.00 38.30 3.16
223 224 2.416747 GCATCTGTGTCTGCAAGTACA 58.583 47.619 0.00 0.00 38.28 2.90
224 225 2.414481 GCATCTGTGTCTGCAAGTACAG 59.586 50.000 14.43 14.43 45.05 2.74
225 226 2.154854 TCTGTGTCTGCAAGTACAGC 57.845 50.000 15.34 0.00 44.13 4.40
226 227 1.412343 TCTGTGTCTGCAAGTACAGCA 59.588 47.619 15.34 11.76 44.13 4.41
234 235 2.291365 TGCAAGTACAGCAGGCATATG 58.709 47.619 8.71 0.00 37.02 1.78
235 236 2.292267 GCAAGTACAGCAGGCATATGT 58.708 47.619 4.29 0.00 0.00 2.29
237 238 3.248602 GCAAGTACAGCAGGCATATGTAC 59.751 47.826 14.77 14.77 46.16 2.90
240 241 4.060038 GTACAGCAGGCATATGTACTGT 57.940 45.455 22.19 20.54 43.73 3.55
242 243 2.237143 ACAGCAGGCATATGTACTGTGT 59.763 45.455 22.19 20.56 37.02 3.72
243 244 3.273434 CAGCAGGCATATGTACTGTGTT 58.727 45.455 22.19 11.48 34.79 3.32
246 247 5.353956 CAGCAGGCATATGTACTGTGTTAAA 59.646 40.000 22.19 0.00 34.79 1.52
247 248 5.943416 AGCAGGCATATGTACTGTGTTAAAA 59.057 36.000 22.19 0.00 34.79 1.52
248 249 6.094048 AGCAGGCATATGTACTGTGTTAAAAG 59.906 38.462 22.19 3.74 34.79 2.27
249 250 6.093495 GCAGGCATATGTACTGTGTTAAAAGA 59.907 38.462 22.19 0.00 34.79 2.52
250 251 7.361713 GCAGGCATATGTACTGTGTTAAAAGAA 60.362 37.037 22.19 0.00 34.79 2.52
251 252 8.511321 CAGGCATATGTACTGTGTTAAAAGAAA 58.489 33.333 16.64 0.00 0.00 2.52
252 253 9.073475 AGGCATATGTACTGTGTTAAAAGAAAA 57.927 29.630 4.29 0.00 0.00 2.29
253 254 9.855021 GGCATATGTACTGTGTTAAAAGAAAAT 57.145 29.630 4.29 0.00 0.00 1.82
292 293 4.035208 CCAATAGTCACACCCGATAAAAGC 59.965 45.833 0.00 0.00 0.00 3.51
293 294 2.851263 AGTCACACCCGATAAAAGCA 57.149 45.000 0.00 0.00 0.00 3.91
294 295 3.134574 AGTCACACCCGATAAAAGCAA 57.865 42.857 0.00 0.00 0.00 3.91
295 296 3.074412 AGTCACACCCGATAAAAGCAAG 58.926 45.455 0.00 0.00 0.00 4.01
296 297 2.812011 GTCACACCCGATAAAAGCAAGT 59.188 45.455 0.00 0.00 0.00 3.16
297 298 3.252458 GTCACACCCGATAAAAGCAAGTT 59.748 43.478 0.00 0.00 0.00 2.66
299 300 3.252215 CACACCCGATAAAAGCAAGTTCA 59.748 43.478 0.00 0.00 0.00 3.18
300 301 3.502211 ACACCCGATAAAAGCAAGTTCAG 59.498 43.478 0.00 0.00 0.00 3.02
301 302 3.502211 CACCCGATAAAAGCAAGTTCAGT 59.498 43.478 0.00 0.00 0.00 3.41
302 303 3.751698 ACCCGATAAAAGCAAGTTCAGTC 59.248 43.478 0.00 0.00 0.00 3.51
303 304 4.003648 CCCGATAAAAGCAAGTTCAGTCT 58.996 43.478 0.00 0.00 0.00 3.24
304 305 5.175859 CCCGATAAAAGCAAGTTCAGTCTA 58.824 41.667 0.00 0.00 0.00 2.59
306 307 6.402226 CCCGATAAAAGCAAGTTCAGTCTAAC 60.402 42.308 0.00 0.00 0.00 2.34
307 308 6.234213 CGATAAAAGCAAGTTCAGTCTAACG 58.766 40.000 0.00 0.00 34.46 3.18
308 309 6.089016 CGATAAAAGCAAGTTCAGTCTAACGA 59.911 38.462 0.00 0.00 34.46 3.85
309 310 7.358931 CGATAAAAGCAAGTTCAGTCTAACGAA 60.359 37.037 0.00 0.00 34.46 3.85
310 311 6.619801 AAAAGCAAGTTCAGTCTAACGAAT 57.380 33.333 0.00 0.00 34.46 3.34
313 314 4.452455 AGCAAGTTCAGTCTAACGAATTGG 59.548 41.667 0.00 0.00 34.46 3.16
314 315 4.451096 GCAAGTTCAGTCTAACGAATTGGA 59.549 41.667 0.00 0.00 34.46 3.53
315 316 5.049680 GCAAGTTCAGTCTAACGAATTGGAA 60.050 40.000 0.00 0.00 34.46 3.53
317 318 6.541111 AGTTCAGTCTAACGAATTGGAAAC 57.459 37.500 0.00 0.00 34.46 2.78
318 319 6.053005 AGTTCAGTCTAACGAATTGGAAACA 58.947 36.000 0.00 0.00 34.50 2.83
354 355 5.682943 TTTGACGAAACTAAACATGGGAG 57.317 39.130 0.00 0.00 0.00 4.30
355 356 4.345859 TGACGAAACTAAACATGGGAGT 57.654 40.909 0.00 0.00 0.00 3.85
358 359 5.217978 ACGAAACTAAACATGGGAGTACA 57.782 39.130 0.00 0.00 0.00 2.90
359 360 5.613329 ACGAAACTAAACATGGGAGTACAA 58.387 37.500 0.00 0.00 0.00 2.41
360 361 6.235664 ACGAAACTAAACATGGGAGTACAAT 58.764 36.000 0.00 0.00 0.00 2.71
361 362 6.148811 ACGAAACTAAACATGGGAGTACAATG 59.851 38.462 0.00 0.00 0.00 2.82
362 363 6.403200 CGAAACTAAACATGGGAGTACAATGG 60.403 42.308 0.00 0.00 0.00 3.16
363 364 4.855340 ACTAAACATGGGAGTACAATGGG 58.145 43.478 0.00 0.00 0.00 4.00
364 365 2.143876 AACATGGGAGTACAATGGGC 57.856 50.000 0.00 0.00 0.00 5.36
365 366 0.107214 ACATGGGAGTACAATGGGCG 60.107 55.000 0.00 0.00 0.00 6.13
366 367 1.152963 ATGGGAGTACAATGGGCGC 60.153 57.895 0.00 0.00 0.00 6.53
367 368 2.516225 GGGAGTACAATGGGCGCC 60.516 66.667 21.18 21.18 0.00 6.53
368 369 2.270850 GGAGTACAATGGGCGCCA 59.729 61.111 30.85 15.30 38.19 5.69
369 370 1.377987 GGAGTACAATGGGCGCCAA 60.378 57.895 30.85 20.37 36.95 4.52
371 372 1.376609 GAGTACAATGGGCGCCAAGG 61.377 60.000 30.85 16.57 36.95 3.61
372 373 1.677633 GTACAATGGGCGCCAAGGT 60.678 57.895 30.85 21.72 36.95 3.50
373 374 1.075836 TACAATGGGCGCCAAGGTT 59.924 52.632 30.85 13.77 36.95 3.50
374 375 0.540830 TACAATGGGCGCCAAGGTTT 60.541 50.000 30.85 5.34 36.95 3.27
375 376 1.374505 CAATGGGCGCCAAGGTTTG 60.375 57.895 30.85 15.34 36.95 2.93
376 377 1.532794 AATGGGCGCCAAGGTTTGA 60.533 52.632 30.85 0.65 36.95 2.69
378 379 0.033601 ATGGGCGCCAAGGTTTGATA 60.034 50.000 30.85 0.67 36.95 2.15
379 380 0.963355 TGGGCGCCAAGGTTTGATAC 60.963 55.000 30.85 6.35 0.00 2.24
393 394 5.487433 GGTTTGATACCCCAAAATTTCAGG 58.513 41.667 0.00 0.00 41.43 3.86
396 397 6.755542 TTGATACCCCAAAATTTCAGGTTT 57.244 33.333 10.86 4.97 31.89 3.27
397 398 6.755542 TGATACCCCAAAATTTCAGGTTTT 57.244 33.333 10.86 2.17 31.89 2.43
398 399 6.764379 TGATACCCCAAAATTTCAGGTTTTC 58.236 36.000 10.86 9.45 31.89 2.29
402 403 5.131809 ACCCCAAAATTTCAGGTTTTCATGA 59.868 36.000 0.00 0.00 38.90 3.07
404 405 6.464180 CCCCAAAATTTCAGGTTTTCATGAGA 60.464 38.462 0.00 0.00 41.62 3.27
405 406 6.991531 CCCAAAATTTCAGGTTTTCATGAGAA 59.008 34.615 0.00 0.00 41.62 2.87
406 407 7.662669 CCCAAAATTTCAGGTTTTCATGAGAAT 59.337 33.333 1.53 0.00 41.62 2.40
407 408 9.059260 CCAAAATTTCAGGTTTTCATGAGAATT 57.941 29.630 1.53 0.00 41.62 2.17
412 413 8.876275 TTTCAGGTTTTCATGAGAATTTTCTG 57.124 30.769 1.53 8.12 41.62 3.02
413 414 6.985117 TCAGGTTTTCATGAGAATTTTCTGG 58.015 36.000 1.53 0.00 37.73 3.86
414 415 6.550854 TCAGGTTTTCATGAGAATTTTCTGGT 59.449 34.615 1.53 0.00 37.73 4.00
416 417 8.526147 CAGGTTTTCATGAGAATTTTCTGGTAT 58.474 33.333 1.53 0.00 37.73 2.73
417 418 9.093458 AGGTTTTCATGAGAATTTTCTGGTATT 57.907 29.630 1.53 0.00 37.73 1.89
451 452 8.679344 TTAATATTCATATAGAGGGTGGAGCA 57.321 34.615 0.00 0.00 0.00 4.26
452 453 4.899352 ATTCATATAGAGGGTGGAGCAC 57.101 45.455 0.00 0.00 0.00 4.40
461 462 3.386237 GTGGAGCACCCGAGAGCT 61.386 66.667 0.00 0.00 43.17 4.09
466 467 3.706373 GCACCCGAGAGCTCCCAA 61.706 66.667 10.93 0.00 0.00 4.12
467 468 2.581354 CACCCGAGAGCTCCCAAG 59.419 66.667 10.93 0.00 0.00 3.61
468 469 1.984570 CACCCGAGAGCTCCCAAGA 60.985 63.158 10.93 0.00 0.00 3.02
469 470 1.229209 ACCCGAGAGCTCCCAAGAA 60.229 57.895 10.93 0.00 0.00 2.52
470 471 1.219393 CCCGAGAGCTCCCAAGAAC 59.781 63.158 10.93 0.00 0.00 3.01
471 472 1.219393 CCGAGAGCTCCCAAGAACC 59.781 63.158 10.93 0.00 0.00 3.62
490 491 6.238648 AGAACCCAACATTTAAGAGTACTGG 58.761 40.000 0.00 0.00 0.00 4.00
535 536 3.786635 CCTGAGCAATAGTCACACCTAC 58.213 50.000 0.00 0.00 0.00 3.18
543 544 9.595823 GAGCAATAGTCACACCTACTAAAAATA 57.404 33.333 0.00 0.00 33.36 1.40
565 566 4.437682 TGGTCAATCCAACTGAGAGTTT 57.562 40.909 0.00 0.00 44.12 2.66
566 567 4.136796 TGGTCAATCCAACTGAGAGTTTG 58.863 43.478 0.00 0.00 44.12 2.93
568 569 3.817647 GTCAATCCAACTGAGAGTTTGCT 59.182 43.478 0.00 0.00 36.03 3.91
569 570 3.817084 TCAATCCAACTGAGAGTTTGCTG 59.183 43.478 0.00 0.00 36.03 4.41
571 572 3.117491 TCCAACTGAGAGTTTGCTGAG 57.883 47.619 0.00 0.00 36.03 3.35
572 573 2.435805 TCCAACTGAGAGTTTGCTGAGT 59.564 45.455 0.00 0.00 36.03 3.41
573 574 2.547211 CCAACTGAGAGTTTGCTGAGTG 59.453 50.000 0.00 0.00 36.03 3.51
574 575 3.201290 CAACTGAGAGTTTGCTGAGTGT 58.799 45.455 0.00 0.00 36.03 3.55
579 580 5.880332 ACTGAGAGTTTGCTGAGTGTTTAAA 59.120 36.000 0.00 0.00 0.00 1.52
580 581 6.374333 ACTGAGAGTTTGCTGAGTGTTTAAAA 59.626 34.615 0.00 0.00 0.00 1.52
581 582 6.551736 TGAGAGTTTGCTGAGTGTTTAAAAC 58.448 36.000 0.00 0.00 0.00 2.43
582 583 6.150307 TGAGAGTTTGCTGAGTGTTTAAAACA 59.850 34.615 0.00 0.00 39.52 2.83
593 594 3.427243 TGTTTAAAACACTCCGCAAACG 58.573 40.909 0.00 0.00 36.25 3.60
594 595 3.126514 TGTTTAAAACACTCCGCAAACGA 59.873 39.130 0.00 0.00 37.81 3.85
595 596 4.201930 TGTTTAAAACACTCCGCAAACGAT 60.202 37.500 0.00 0.00 37.81 3.73
596 597 4.555348 TTAAAACACTCCGCAAACGATT 57.445 36.364 0.00 0.00 43.93 3.34
598 599 2.399396 AACACTCCGCAAACGATTTG 57.601 45.000 0.00 0.00 43.93 2.32
599 600 1.588674 ACACTCCGCAAACGATTTGA 58.411 45.000 12.62 0.00 43.26 2.69
602 603 2.159430 CACTCCGCAAACGATTTGATGA 59.841 45.455 12.62 7.81 43.26 2.92
603 604 2.416547 ACTCCGCAAACGATTTGATGAG 59.583 45.455 12.62 15.54 43.26 2.90
605 606 2.159430 TCCGCAAACGATTTGATGAGTG 59.841 45.455 12.62 0.00 43.26 3.51
606 607 1.906966 CGCAAACGATTTGATGAGTGC 59.093 47.619 12.62 0.00 43.26 4.40
621 622 3.390135 TGAGTGCTTACTCGGTGAAAAG 58.610 45.455 3.32 0.00 39.50 2.27
649 650 0.233074 CAGTTGTGCGTGCTGTAGTG 59.767 55.000 0.00 0.00 0.00 2.74
659 660 2.031560 CGTGCTGTAGTGCAAAACAAGA 59.968 45.455 4.16 0.00 45.12 3.02
661 662 4.420168 GTGCTGTAGTGCAAAACAAGAAA 58.580 39.130 4.16 0.00 45.12 2.52
662 663 4.500477 GTGCTGTAGTGCAAAACAAGAAAG 59.500 41.667 4.16 0.00 45.12 2.62
664 665 3.690422 TGTAGTGCAAAACAAGAAAGCG 58.310 40.909 0.05 0.00 0.00 4.68
665 666 2.208326 AGTGCAAAACAAGAAAGCGG 57.792 45.000 0.00 0.00 0.00 5.52
668 669 3.123050 GTGCAAAACAAGAAAGCGGAAT 58.877 40.909 0.00 0.00 0.00 3.01
688 689 7.542130 GCGGAATCAAAACATGAGATAAACTTT 59.458 33.333 0.00 0.00 42.53 2.66
689 690 8.853345 CGGAATCAAAACATGAGATAAACTTTG 58.147 33.333 0.00 0.00 42.53 2.77
697 698 5.354234 ACATGAGATAAACTTTGGCTTACCG 59.646 40.000 0.00 0.00 39.70 4.02
703 704 4.572985 AAACTTTGGCTTACCGTTTACC 57.427 40.909 0.00 0.00 39.70 2.85
705 706 3.553904 ACTTTGGCTTACCGTTTACCAA 58.446 40.909 0.00 0.00 39.70 3.67
707 708 5.315348 ACTTTGGCTTACCGTTTACCAATA 58.685 37.500 0.00 0.00 39.96 1.90
709 710 4.283363 TGGCTTACCGTTTACCAATACA 57.717 40.909 0.00 0.00 39.70 2.29
711 712 3.064408 GGCTTACCGTTTACCAATACAGC 59.936 47.826 0.00 0.00 0.00 4.40
712 713 3.937079 GCTTACCGTTTACCAATACAGCT 59.063 43.478 0.00 0.00 0.00 4.24
713 714 4.201783 GCTTACCGTTTACCAATACAGCTG 60.202 45.833 13.48 13.48 0.00 4.24
729 949 2.288458 CAGCTGCAAAATTGGGTTGTTG 59.712 45.455 0.00 0.00 0.00 3.33
738 958 6.200097 GCAAAATTGGGTTGTTGTAGTTGTAG 59.800 38.462 0.00 0.00 0.00 2.74
739 959 5.447624 AATTGGGTTGTTGTAGTTGTAGC 57.552 39.130 0.00 0.00 0.00 3.58
742 962 3.118186 TGGGTTGTTGTAGTTGTAGCTGT 60.118 43.478 0.00 0.00 0.00 4.40
743 963 3.250040 GGGTTGTTGTAGTTGTAGCTGTG 59.750 47.826 0.00 0.00 0.00 3.66
744 964 3.875134 GGTTGTTGTAGTTGTAGCTGTGT 59.125 43.478 0.00 0.00 0.00 3.72
750 970 4.771903 TGTAGTTGTAGCTGTGTTGGAAA 58.228 39.130 0.00 0.00 0.00 3.13
781 1002 3.188460 CGGTCGAAAGAATTGGTGACATT 59.812 43.478 0.00 0.00 45.01 2.71
896 1124 2.960170 CTTTGTCTGCAGGCTGCC 59.040 61.111 34.58 20.72 44.23 4.85
967 3583 1.519455 CACACGGCAGGCTAGCTAC 60.519 63.158 15.72 4.14 34.17 3.58
978 7379 3.563223 AGGCTAGCTACCTGATAAACGA 58.437 45.455 15.72 0.00 35.72 3.85
985 7386 3.063588 GCTACCTGATAAACGAAAGCACC 59.936 47.826 0.00 0.00 0.00 5.01
986 7387 3.134574 ACCTGATAAACGAAAGCACCA 57.865 42.857 0.00 0.00 0.00 4.17
989 7390 2.811431 CTGATAAACGAAAGCACCACCA 59.189 45.455 0.00 0.00 0.00 4.17
992 7393 1.398692 AAACGAAAGCACCACCACAT 58.601 45.000 0.00 0.00 0.00 3.21
993 7394 2.264005 AACGAAAGCACCACCACATA 57.736 45.000 0.00 0.00 0.00 2.29
994 7395 2.489938 ACGAAAGCACCACCACATAT 57.510 45.000 0.00 0.00 0.00 1.78
1017 7421 2.672996 ATGGCGAGCACCACCAAC 60.673 61.111 0.00 0.00 44.17 3.77
1031 7435 1.154225 CCAACGCCGCTGTGATTTC 60.154 57.895 0.00 0.00 0.00 2.17
1036 7440 2.787249 CCGCTGTGATTTCCTGCG 59.213 61.111 0.00 0.00 45.91 5.18
1284 7712 2.006062 CATCCGCATCGTCGACTCG 61.006 63.158 14.70 11.07 0.00 4.18
1304 7738 5.353123 ACTCGTTCAATATTGGCATAAACGT 59.647 36.000 25.74 13.75 39.09 3.99
1386 7820 3.557898 GGAAGAGCCTCAATCTTGACACA 60.558 47.826 0.00 0.00 37.14 3.72
1401 7835 0.179018 ACACAAGCCAAGGTGAGGTC 60.179 55.000 0.00 0.00 38.38 3.85
1464 7922 3.850508 ATGCATGCATGGCGTCAT 58.149 50.000 31.74 18.28 35.03 3.06
1481 7939 1.067213 TCATTCGATCGTTCAGCACCA 60.067 47.619 15.94 0.00 0.00 4.17
1494 7957 1.138883 GCACCAGCTCGTGACGATA 59.861 57.895 16.23 0.00 35.68 2.92
1495 7958 0.249073 GCACCAGCTCGTGACGATAT 60.249 55.000 16.23 0.00 35.68 1.63
1496 7959 1.759994 CACCAGCTCGTGACGATATC 58.240 55.000 8.60 0.80 35.68 1.63
1498 7983 0.586802 CCAGCTCGTGACGATATCGA 59.413 55.000 30.75 7.30 43.02 3.59
1500 7985 2.237526 CAGCTCGTGACGATATCGATG 58.762 52.381 30.75 14.95 43.02 3.84
1503 7988 2.652642 GCTCGTGACGATATCGATGTTC 59.347 50.000 30.75 17.75 43.02 3.18
1504 7989 3.848554 GCTCGTGACGATATCGATGTTCA 60.849 47.826 30.75 20.05 43.02 3.18
1535 8023 6.729187 AGTTTCAGCTTTCAAGTGTGTAATC 58.271 36.000 0.00 0.00 0.00 1.75
1609 8101 2.295253 CCGTCTACGAGGCAGAATTT 57.705 50.000 3.65 0.00 43.02 1.82
1610 8102 3.431922 CCGTCTACGAGGCAGAATTTA 57.568 47.619 3.65 0.00 43.02 1.40
1611 8103 3.114065 CCGTCTACGAGGCAGAATTTAC 58.886 50.000 3.65 0.00 43.02 2.01
1612 8104 3.181489 CCGTCTACGAGGCAGAATTTACT 60.181 47.826 3.65 0.00 43.02 2.24
1753 8265 1.000283 CATCTCGCTGTCCCCTATGAC 60.000 57.143 0.00 0.00 35.77 3.06
1759 8271 1.866015 CTGTCCCCTATGACCACTGA 58.134 55.000 0.00 0.00 34.25 3.41
1770 8283 3.484953 TGACCACTGAATACCTAGGGT 57.515 47.619 14.81 1.17 40.16 4.34
1788 8301 2.941064 GGGTATCTCGTGCCTTAAAACC 59.059 50.000 0.00 0.00 32.37 3.27
1801 8314 1.972872 TAAAACCCCCGCAAACGTTA 58.027 45.000 0.00 0.00 37.70 3.18
1802 8315 1.330234 AAAACCCCCGCAAACGTTAT 58.670 45.000 0.00 0.00 37.70 1.89
1833 8347 1.017177 TCGGATCCTTTTTGCCGTCG 61.017 55.000 10.75 0.00 43.92 5.12
1835 8349 0.727398 GGATCCTTTTTGCCGTCGAG 59.273 55.000 3.84 0.00 0.00 4.04
1854 8368 1.417145 AGCATGGTGGCACAAACATTT 59.583 42.857 20.82 2.17 44.16 2.32
1869 8383 4.946266 TTTGCGGACGCGTTCGGA 62.946 61.111 38.07 34.77 45.51 4.55
1879 8393 1.538075 ACGCGTTCGGATTCCAAATTT 59.462 42.857 5.58 0.00 40.69 1.82
1888 8402 2.755103 GGATTCCAAATTTCCGCAGACT 59.245 45.455 0.00 0.00 0.00 3.24
1892 8431 3.861840 TCCAAATTTCCGCAGACTAGAG 58.138 45.455 0.00 0.00 0.00 2.43
1893 8432 2.352960 CCAAATTTCCGCAGACTAGAGC 59.647 50.000 0.00 0.00 0.00 4.09
1894 8433 2.317530 AATTTCCGCAGACTAGAGCC 57.682 50.000 0.00 0.00 0.00 4.70
1895 8434 1.490574 ATTTCCGCAGACTAGAGCCT 58.509 50.000 0.00 0.00 0.00 4.58
1896 8435 2.139323 TTTCCGCAGACTAGAGCCTA 57.861 50.000 0.00 0.00 0.00 3.93
1897 8436 1.681538 TTCCGCAGACTAGAGCCTAG 58.318 55.000 0.00 7.46 0.00 3.02
1898 8437 0.837940 TCCGCAGACTAGAGCCTAGA 59.162 55.000 14.03 0.00 0.00 2.43
1899 8438 1.202710 TCCGCAGACTAGAGCCTAGAG 60.203 57.143 14.03 6.52 0.00 2.43
1944 8487 2.438434 GGGCGGTGGACAAGATGG 60.438 66.667 0.00 0.00 0.00 3.51
1947 8490 1.750399 GCGGTGGACAAGATGGCAT 60.750 57.895 0.00 0.00 0.00 4.40
1977 8526 3.432186 CGAGGGCTTCATGGACAATAAGA 60.432 47.826 0.00 0.00 0.00 2.10
2021 8570 5.477984 CCATGACATCAAGGAGGAAAAGAAA 59.522 40.000 0.00 0.00 36.89 2.52
2022 8571 6.015180 CCATGACATCAAGGAGGAAAAGAAAA 60.015 38.462 0.00 0.00 36.89 2.29
2023 8572 7.436118 CATGACATCAAGGAGGAAAAGAAAAA 58.564 34.615 0.00 0.00 0.00 1.94
2027 8576 6.611236 ACATCAAGGAGGAAAAGAAAAAGGAA 59.389 34.615 0.00 0.00 0.00 3.36
2030 8579 6.895204 TCAAGGAGGAAAAGAAAAAGGAAAGA 59.105 34.615 0.00 0.00 0.00 2.52
2070 8621 3.074412 GCGAGGGAGAAAAAGATCAACA 58.926 45.455 0.00 0.00 0.00 3.33
2139 8692 4.821589 GGAGGGTTGAGCCGCGAG 62.822 72.222 8.23 0.00 38.44 5.03
2156 8709 0.320771 GAGCGCTTCAGAGGAAACCA 60.321 55.000 13.26 0.00 31.35 3.67
2199 8752 2.349886 GACGAGTTGGATCTCAATGTGC 59.650 50.000 0.00 0.00 37.73 4.57
2248 8801 1.606668 GATGTTGAACCACTTGCCGAA 59.393 47.619 0.00 0.00 0.00 4.30
2249 8802 1.686355 TGTTGAACCACTTGCCGAAT 58.314 45.000 0.00 0.00 0.00 3.34
2262 8815 1.437573 CCGAATGAGGTAGCGCAGA 59.562 57.895 11.47 0.00 0.00 4.26
2265 8818 1.536922 CGAATGAGGTAGCGCAGACAT 60.537 52.381 11.47 4.38 0.00 3.06
2269 8822 1.033574 GAGGTAGCGCAGACATAGGT 58.966 55.000 11.47 0.00 0.00 3.08
2289 8842 4.069232 CGGAGGAGCCAGCGACAA 62.069 66.667 0.00 0.00 35.94 3.18
2299 8852 1.800805 CCAGCGACAAAGTGATGAGT 58.199 50.000 0.00 0.00 0.00 3.41
2355 8912 6.769134 AATTTAGGACCGGAACTTTTATGG 57.231 37.500 9.46 0.00 0.00 2.74
2379 8936 2.543653 GGGCGCATGTAAAAGCTAATGG 60.544 50.000 10.83 0.00 0.00 3.16
2414 8972 6.920758 GTGTTTGGTTGTAAAGATTGCATACA 59.079 34.615 0.00 0.00 0.00 2.29
2417 8975 7.517614 TTGGTTGTAAAGATTGCATACAGAA 57.482 32.000 0.00 0.00 31.72 3.02
2418 8976 7.701539 TGGTTGTAAAGATTGCATACAGAAT 57.298 32.000 0.00 0.00 31.72 2.40
2419 8977 8.121305 TGGTTGTAAAGATTGCATACAGAATT 57.879 30.769 0.00 0.00 31.72 2.17
2420 8978 9.237187 TGGTTGTAAAGATTGCATACAGAATTA 57.763 29.630 0.00 0.00 31.72 1.40
2421 8979 9.503427 GGTTGTAAAGATTGCATACAGAATTAC 57.497 33.333 0.00 0.00 31.72 1.89
2424 8982 9.665719 TGTAAAGATTGCATACAGAATTACAGA 57.334 29.630 0.00 0.00 0.00 3.41
2427 8985 7.199541 AGATTGCATACAGAATTACAGATGC 57.800 36.000 7.55 7.55 40.04 3.91
2428 8986 6.769341 AGATTGCATACAGAATTACAGATGCA 59.231 34.615 11.48 11.48 45.75 3.96
2429 8987 5.739752 TGCATACAGAATTACAGATGCAC 57.260 39.130 11.48 0.00 43.38 4.57
2430 8988 5.430886 TGCATACAGAATTACAGATGCACT 58.569 37.500 11.48 0.00 43.38 4.40
2431 8989 5.882000 TGCATACAGAATTACAGATGCACTT 59.118 36.000 11.48 0.00 43.38 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.770433 CACCTCATCATACAGTTAAGAATTGGA 59.230 37.037 0.00 0.00 0.00 3.53
5 6 8.321353 TGTCACCTCATCATACAGTTAAGAATT 58.679 33.333 0.00 0.00 0.00 2.17
9 10 6.018425 GCATGTCACCTCATCATACAGTTAAG 60.018 42.308 0.00 0.00 0.00 1.85
10 11 5.817296 GCATGTCACCTCATCATACAGTTAA 59.183 40.000 0.00 0.00 0.00 2.01
11 12 5.129320 AGCATGTCACCTCATCATACAGTTA 59.871 40.000 0.00 0.00 0.00 2.24
13 14 3.453717 AGCATGTCACCTCATCATACAGT 59.546 43.478 0.00 0.00 0.00 3.55
14 15 4.069300 AGCATGTCACCTCATCATACAG 57.931 45.455 0.00 0.00 0.00 2.74
15 16 4.492494 AAGCATGTCACCTCATCATACA 57.508 40.909 0.00 0.00 0.00 2.29
16 17 6.925610 TTTAAGCATGTCACCTCATCATAC 57.074 37.500 0.00 0.00 0.00 2.39
17 18 7.936496 TTTTTAAGCATGTCACCTCATCATA 57.064 32.000 0.00 0.00 0.00 2.15
44 45 7.322664 GCTTGACTTAAAAATGGGAATGATCA 58.677 34.615 0.00 0.00 0.00 2.92
45 46 6.473455 CGCTTGACTTAAAAATGGGAATGATC 59.527 38.462 0.00 0.00 0.00 2.92
46 47 6.152661 TCGCTTGACTTAAAAATGGGAATGAT 59.847 34.615 0.00 0.00 0.00 2.45
47 48 5.475220 TCGCTTGACTTAAAAATGGGAATGA 59.525 36.000 0.00 0.00 0.00 2.57
48 49 5.708948 TCGCTTGACTTAAAAATGGGAATG 58.291 37.500 0.00 0.00 0.00 2.67
49 50 5.975693 TCGCTTGACTTAAAAATGGGAAT 57.024 34.783 0.00 0.00 0.00 3.01
50 51 5.975693 ATCGCTTGACTTAAAAATGGGAA 57.024 34.783 0.00 0.00 0.00 3.97
51 52 7.040340 TGTTTATCGCTTGACTTAAAAATGGGA 60.040 33.333 0.00 0.00 0.00 4.37
52 53 7.087639 TGTTTATCGCTTGACTTAAAAATGGG 58.912 34.615 0.00 0.00 0.00 4.00
53 54 8.514136 TTGTTTATCGCTTGACTTAAAAATGG 57.486 30.769 0.00 0.00 0.00 3.16
103 104 7.857885 GTCGGATTTGACTATCCAAATGAAATC 59.142 37.037 6.59 0.00 44.19 2.17
105 106 6.183360 CGTCGGATTTGACTATCCAAATGAAA 60.183 38.462 6.59 0.00 44.19 2.69
106 107 5.293324 CGTCGGATTTGACTATCCAAATGAA 59.707 40.000 6.59 0.00 44.19 2.57
107 108 4.808895 CGTCGGATTTGACTATCCAAATGA 59.191 41.667 6.59 0.00 44.19 2.57
108 109 4.570772 ACGTCGGATTTGACTATCCAAATG 59.429 41.667 6.59 0.00 44.19 2.32
109 110 4.766375 ACGTCGGATTTGACTATCCAAAT 58.234 39.130 0.00 0.00 46.09 2.32
110 111 4.081862 AGACGTCGGATTTGACTATCCAAA 60.082 41.667 10.46 0.00 43.60 3.28
111 112 3.446161 AGACGTCGGATTTGACTATCCAA 59.554 43.478 10.46 0.00 43.60 3.53
112 113 3.021695 AGACGTCGGATTTGACTATCCA 58.978 45.455 10.46 0.00 43.60 3.41
113 114 3.181489 ACAGACGTCGGATTTGACTATCC 60.181 47.826 22.71 0.00 40.63 2.59
114 115 3.791887 CACAGACGTCGGATTTGACTATC 59.208 47.826 22.71 0.00 36.71 2.08
115 116 3.442625 TCACAGACGTCGGATTTGACTAT 59.557 43.478 22.71 0.00 36.71 2.12
116 117 2.815503 TCACAGACGTCGGATTTGACTA 59.184 45.455 22.71 0.00 36.71 2.59
117 118 1.611977 TCACAGACGTCGGATTTGACT 59.388 47.619 22.71 0.00 36.71 3.41
118 119 1.986378 CTCACAGACGTCGGATTTGAC 59.014 52.381 22.71 0.00 35.49 3.18
119 120 1.611977 ACTCACAGACGTCGGATTTGA 59.388 47.619 22.71 13.93 0.00 2.69
120 121 1.721389 CACTCACAGACGTCGGATTTG 59.279 52.381 22.71 11.30 0.00 2.32
121 122 1.340248 ACACTCACAGACGTCGGATTT 59.660 47.619 22.71 0.00 0.00 2.17
124 125 0.030235 CAACACTCACAGACGTCGGA 59.970 55.000 22.71 14.09 0.00 4.55
125 126 0.030235 TCAACACTCACAGACGTCGG 59.970 55.000 14.42 14.42 0.00 4.79
126 127 1.268589 ACTCAACACTCACAGACGTCG 60.269 52.381 10.46 7.86 0.00 5.12
129 130 4.160736 TCATACTCAACACTCACAGACG 57.839 45.455 0.00 0.00 0.00 4.18
130 131 4.926238 CCTTCATACTCAACACTCACAGAC 59.074 45.833 0.00 0.00 0.00 3.51
131 132 4.832823 TCCTTCATACTCAACACTCACAGA 59.167 41.667 0.00 0.00 0.00 3.41
132 133 5.139435 TCCTTCATACTCAACACTCACAG 57.861 43.478 0.00 0.00 0.00 3.66
133 134 5.297547 GTTCCTTCATACTCAACACTCACA 58.702 41.667 0.00 0.00 0.00 3.58
134 135 4.691216 GGTTCCTTCATACTCAACACTCAC 59.309 45.833 0.00 0.00 0.00 3.51
136 137 4.894784 TGGTTCCTTCATACTCAACACTC 58.105 43.478 0.00 0.00 0.00 3.51
137 138 4.348168 ACTGGTTCCTTCATACTCAACACT 59.652 41.667 0.00 0.00 0.00 3.55
138 139 4.642429 ACTGGTTCCTTCATACTCAACAC 58.358 43.478 0.00 0.00 0.00 3.32
153 154 4.321230 CCAATAGCAACTTGGAACTGGTTC 60.321 45.833 6.18 5.02 44.95 3.62
154 155 3.573967 CCAATAGCAACTTGGAACTGGTT 59.426 43.478 6.18 0.00 44.95 3.67
155 156 3.157087 CCAATAGCAACTTGGAACTGGT 58.843 45.455 6.18 0.00 44.95 4.00
156 157 3.420893 TCCAATAGCAACTTGGAACTGG 58.579 45.455 11.03 0.00 47.00 4.00
187 188 2.053627 GATGCGCTGTCCAAAAAGTTG 58.946 47.619 9.73 0.00 34.25 3.16
188 189 1.956477 AGATGCGCTGTCCAAAAAGTT 59.044 42.857 9.73 0.00 0.00 2.66
189 190 1.267806 CAGATGCGCTGTCCAAAAAGT 59.732 47.619 9.73 0.00 39.85 2.66
190 191 1.973138 CAGATGCGCTGTCCAAAAAG 58.027 50.000 9.73 0.00 39.85 2.27
201 202 1.134075 CTTGCAGACACAGATGCGC 59.866 57.895 0.00 0.00 45.54 6.09
202 203 1.391485 GTACTTGCAGACACAGATGCG 59.609 52.381 0.00 0.00 45.54 4.73
203 204 2.414481 CTGTACTTGCAGACACAGATGC 59.586 50.000 14.96 0.00 40.67 3.91
204 205 2.414481 GCTGTACTTGCAGACACAGATG 59.586 50.000 21.15 3.64 40.67 2.90
205 206 2.037641 TGCTGTACTTGCAGACACAGAT 59.962 45.455 21.15 0.00 40.67 2.90
207 208 1.869774 TGCTGTACTTGCAGACACAG 58.130 50.000 15.50 15.50 41.06 3.66
214 215 2.291365 CATATGCCTGCTGTACTTGCA 58.709 47.619 12.19 12.19 38.81 4.08
215 216 2.292267 ACATATGCCTGCTGTACTTGC 58.708 47.619 1.58 0.00 0.00 4.01
220 221 3.450817 ACACAGTACATATGCCTGCTGTA 59.549 43.478 18.23 0.00 35.71 2.74
223 224 3.634397 AACACAGTACATATGCCTGCT 57.366 42.857 18.23 1.36 0.00 4.24
224 225 5.811399 TTTAACACAGTACATATGCCTGC 57.189 39.130 18.23 0.00 0.00 4.85
225 226 7.609760 TCTTTTAACACAGTACATATGCCTG 57.390 36.000 17.20 17.20 0.00 4.85
226 227 8.630054 TTTCTTTTAACACAGTACATATGCCT 57.370 30.769 1.58 0.00 0.00 4.75
227 228 9.855021 ATTTTCTTTTAACACAGTACATATGCC 57.145 29.630 1.58 0.00 0.00 4.40
252 253 9.656323 TGACTATTGGTCTACTCCTGTTATAAT 57.344 33.333 1.69 0.00 44.74 1.28
253 254 8.910944 GTGACTATTGGTCTACTCCTGTTATAA 58.089 37.037 1.69 0.00 44.74 0.98
254 255 8.057011 TGTGACTATTGGTCTACTCCTGTTATA 58.943 37.037 1.69 0.00 44.74 0.98
256 257 6.152323 GTGTGACTATTGGTCTACTCCTGTTA 59.848 42.308 1.69 0.00 44.74 2.41
257 258 5.047235 GTGTGACTATTGGTCTACTCCTGTT 60.047 44.000 1.69 0.00 44.74 3.16
258 259 4.463186 GTGTGACTATTGGTCTACTCCTGT 59.537 45.833 1.69 0.00 44.74 4.00
259 260 4.142138 GGTGTGACTATTGGTCTACTCCTG 60.142 50.000 1.69 0.00 44.74 3.86
260 261 4.024670 GGTGTGACTATTGGTCTACTCCT 58.975 47.826 1.69 0.00 44.74 3.69
261 262 3.132467 GGGTGTGACTATTGGTCTACTCC 59.868 52.174 1.69 8.01 44.74 3.85
262 263 3.181489 CGGGTGTGACTATTGGTCTACTC 60.181 52.174 1.69 0.86 44.74 2.59
263 264 2.758979 CGGGTGTGACTATTGGTCTACT 59.241 50.000 1.69 0.00 44.74 2.57
264 265 2.756760 TCGGGTGTGACTATTGGTCTAC 59.243 50.000 1.69 1.57 44.74 2.59
265 266 3.090210 TCGGGTGTGACTATTGGTCTA 57.910 47.619 1.69 0.00 44.74 2.59
267 268 2.981859 ATCGGGTGTGACTATTGGTC 57.018 50.000 0.00 0.00 44.70 4.02
269 270 4.035208 GCTTTTATCGGGTGTGACTATTGG 59.965 45.833 0.00 0.00 0.00 3.16
270 271 4.634004 TGCTTTTATCGGGTGTGACTATTG 59.366 41.667 0.00 0.00 0.00 1.90
272 273 4.481368 TGCTTTTATCGGGTGTGACTAT 57.519 40.909 0.00 0.00 0.00 2.12
273 274 3.965379 TGCTTTTATCGGGTGTGACTA 57.035 42.857 0.00 0.00 0.00 2.59
274 275 2.851263 TGCTTTTATCGGGTGTGACT 57.149 45.000 0.00 0.00 0.00 3.41
275 276 2.812011 ACTTGCTTTTATCGGGTGTGAC 59.188 45.455 0.00 0.00 0.00 3.67
276 277 3.134574 ACTTGCTTTTATCGGGTGTGA 57.865 42.857 0.00 0.00 0.00 3.58
277 278 3.252215 TGAACTTGCTTTTATCGGGTGTG 59.748 43.478 0.00 0.00 0.00 3.82
279 280 3.502211 ACTGAACTTGCTTTTATCGGGTG 59.498 43.478 0.00 0.00 0.00 4.61
280 281 3.751518 ACTGAACTTGCTTTTATCGGGT 58.248 40.909 0.00 0.00 0.00 5.28
281 282 4.003648 AGACTGAACTTGCTTTTATCGGG 58.996 43.478 0.00 0.00 0.00 5.14
283 284 6.089016 TCGTTAGACTGAACTTGCTTTTATCG 59.911 38.462 0.00 0.00 0.00 2.92
284 285 7.347508 TCGTTAGACTGAACTTGCTTTTATC 57.652 36.000 0.00 0.00 0.00 1.75
285 286 7.724305 TTCGTTAGACTGAACTTGCTTTTAT 57.276 32.000 0.00 0.00 0.00 1.40
287 288 6.619801 ATTCGTTAGACTGAACTTGCTTTT 57.380 33.333 0.00 0.00 0.00 2.27
292 293 6.539649 TTCCAATTCGTTAGACTGAACTTG 57.460 37.500 0.00 0.00 0.00 3.16
293 294 6.540914 TGTTTCCAATTCGTTAGACTGAACTT 59.459 34.615 0.00 0.00 0.00 2.66
294 295 6.053005 TGTTTCCAATTCGTTAGACTGAACT 58.947 36.000 0.00 0.00 0.00 3.01
295 296 6.295039 TGTTTCCAATTCGTTAGACTGAAC 57.705 37.500 0.00 0.00 0.00 3.18
296 297 6.764085 TCTTGTTTCCAATTCGTTAGACTGAA 59.236 34.615 0.00 0.00 0.00 3.02
297 298 6.285224 TCTTGTTTCCAATTCGTTAGACTGA 58.715 36.000 0.00 0.00 0.00 3.41
299 300 6.202954 CACTCTTGTTTCCAATTCGTTAGACT 59.797 38.462 0.00 0.00 0.00 3.24
300 301 6.202188 TCACTCTTGTTTCCAATTCGTTAGAC 59.798 38.462 0.00 0.00 0.00 2.59
301 302 6.285224 TCACTCTTGTTTCCAATTCGTTAGA 58.715 36.000 0.00 0.00 0.00 2.10
302 303 6.539649 TCACTCTTGTTTCCAATTCGTTAG 57.460 37.500 0.00 0.00 0.00 2.34
303 304 6.316640 TGTTCACTCTTGTTTCCAATTCGTTA 59.683 34.615 0.00 0.00 0.00 3.18
304 305 5.124776 TGTTCACTCTTGTTTCCAATTCGTT 59.875 36.000 0.00 0.00 0.00 3.85
306 307 5.168526 TGTTCACTCTTGTTTCCAATTCG 57.831 39.130 0.00 0.00 0.00 3.34
307 308 8.424274 AAAATGTTCACTCTTGTTTCCAATTC 57.576 30.769 0.00 0.00 0.00 2.17
308 309 8.791327 AAAAATGTTCACTCTTGTTTCCAATT 57.209 26.923 0.00 0.00 0.00 2.32
330 331 6.095720 ACTCCCATGTTTAGTTTCGTCAAAAA 59.904 34.615 0.00 0.00 0.00 1.94
331 332 5.591067 ACTCCCATGTTTAGTTTCGTCAAAA 59.409 36.000 0.00 0.00 0.00 2.44
332 333 5.127491 ACTCCCATGTTTAGTTTCGTCAAA 58.873 37.500 0.00 0.00 0.00 2.69
334 335 4.345859 ACTCCCATGTTTAGTTTCGTCA 57.654 40.909 0.00 0.00 0.00 4.35
335 336 5.232463 TGTACTCCCATGTTTAGTTTCGTC 58.768 41.667 0.00 0.00 0.00 4.20
336 337 5.217978 TGTACTCCCATGTTTAGTTTCGT 57.782 39.130 0.00 0.00 0.00 3.85
337 338 6.403200 CCATTGTACTCCCATGTTTAGTTTCG 60.403 42.308 0.00 0.00 0.00 3.46
338 339 6.127730 CCCATTGTACTCCCATGTTTAGTTTC 60.128 42.308 0.00 0.00 0.00 2.78
339 340 5.714806 CCCATTGTACTCCCATGTTTAGTTT 59.285 40.000 0.00 0.00 0.00 2.66
340 341 5.261216 CCCATTGTACTCCCATGTTTAGTT 58.739 41.667 0.00 0.00 0.00 2.24
341 342 4.855340 CCCATTGTACTCCCATGTTTAGT 58.145 43.478 0.00 0.00 0.00 2.24
342 343 3.632145 GCCCATTGTACTCCCATGTTTAG 59.368 47.826 0.00 0.00 0.00 1.85
343 344 3.626930 GCCCATTGTACTCCCATGTTTA 58.373 45.455 0.00 0.00 0.00 2.01
346 347 0.107214 CGCCCATTGTACTCCCATGT 60.107 55.000 0.00 0.00 0.00 3.21
347 348 1.447317 GCGCCCATTGTACTCCCATG 61.447 60.000 0.00 0.00 0.00 3.66
349 350 2.270850 GCGCCCATTGTACTCCCA 59.729 61.111 0.00 0.00 0.00 4.37
350 351 2.516225 GGCGCCCATTGTACTCCC 60.516 66.667 18.11 0.00 0.00 4.30
351 352 1.376609 CTTGGCGCCCATTGTACTCC 61.377 60.000 26.77 0.00 31.53 3.85
352 353 1.376609 CCTTGGCGCCCATTGTACTC 61.377 60.000 26.77 0.00 31.53 2.59
354 355 1.248101 AACCTTGGCGCCCATTGTAC 61.248 55.000 26.77 0.00 31.53 2.90
355 356 0.540830 AAACCTTGGCGCCCATTGTA 60.541 50.000 26.77 0.00 31.53 2.41
358 359 0.904394 ATCAAACCTTGGCGCCCATT 60.904 50.000 26.77 10.00 31.53 3.16
359 360 0.033601 TATCAAACCTTGGCGCCCAT 60.034 50.000 26.77 3.01 31.53 4.00
360 361 0.963355 GTATCAAACCTTGGCGCCCA 60.963 55.000 26.77 13.22 0.00 5.36
361 362 1.663379 GGTATCAAACCTTGGCGCCC 61.663 60.000 26.77 6.44 45.75 6.13
362 363 1.807226 GGTATCAAACCTTGGCGCC 59.193 57.895 22.73 22.73 45.75 6.53
371 372 6.109156 ACCTGAAATTTTGGGGTATCAAAC 57.891 37.500 13.43 0.00 36.49 2.93
372 373 6.755542 AACCTGAAATTTTGGGGTATCAAA 57.244 33.333 13.43 0.00 35.15 2.69
373 374 6.755542 AAACCTGAAATTTTGGGGTATCAA 57.244 33.333 13.43 0.00 0.00 2.57
374 375 6.327626 TGAAAACCTGAAATTTTGGGGTATCA 59.672 34.615 13.43 14.21 29.44 2.15
375 376 6.764379 TGAAAACCTGAAATTTTGGGGTATC 58.236 36.000 13.43 12.59 29.44 2.24
376 377 6.755542 TGAAAACCTGAAATTTTGGGGTAT 57.244 33.333 13.43 6.27 29.44 2.73
378 379 5.131809 TCATGAAAACCTGAAATTTTGGGGT 59.868 36.000 13.43 9.45 29.44 4.95
379 380 5.619220 TCATGAAAACCTGAAATTTTGGGG 58.381 37.500 13.43 8.94 29.44 4.96
380 381 6.523840 TCTCATGAAAACCTGAAATTTTGGG 58.476 36.000 13.43 10.93 29.44 4.12
386 387 9.485206 CAGAAAATTCTCATGAAAACCTGAAAT 57.515 29.630 0.00 0.00 34.74 2.17
387 388 7.927629 CCAGAAAATTCTCATGAAAACCTGAAA 59.072 33.333 0.00 0.00 34.74 2.69
388 389 7.069826 ACCAGAAAATTCTCATGAAAACCTGAA 59.930 33.333 0.00 0.00 34.74 3.02
389 390 6.550854 ACCAGAAAATTCTCATGAAAACCTGA 59.449 34.615 0.00 0.00 34.74 3.86
390 391 6.752168 ACCAGAAAATTCTCATGAAAACCTG 58.248 36.000 0.00 0.00 34.74 4.00
391 392 6.983906 ACCAGAAAATTCTCATGAAAACCT 57.016 33.333 0.00 0.00 34.74 3.50
392 393 9.710900 AAATACCAGAAAATTCTCATGAAAACC 57.289 29.630 0.00 0.00 34.74 3.27
425 426 9.111519 TGCTCCACCCTCTATATGAATATTAAA 57.888 33.333 0.00 0.00 0.00 1.52
426 427 8.540388 GTGCTCCACCCTCTATATGAATATTAA 58.460 37.037 0.00 0.00 0.00 1.40
428 429 6.951971 GTGCTCCACCCTCTATATGAATATT 58.048 40.000 0.00 0.00 0.00 1.28
429 430 6.552445 GTGCTCCACCCTCTATATGAATAT 57.448 41.667 0.00 0.00 0.00 1.28
431 432 4.899352 GTGCTCCACCCTCTATATGAAT 57.101 45.455 0.00 0.00 0.00 2.57
450 451 1.544825 TTCTTGGGAGCTCTCGGGTG 61.545 60.000 14.64 1.09 0.00 4.61
451 452 1.229209 TTCTTGGGAGCTCTCGGGT 60.229 57.895 14.64 0.00 0.00 5.28
452 453 1.219393 GTTCTTGGGAGCTCTCGGG 59.781 63.158 14.64 6.48 0.00 5.14
453 454 1.219393 GGTTCTTGGGAGCTCTCGG 59.781 63.158 14.64 6.87 0.00 4.63
455 456 0.693049 TTGGGTTCTTGGGAGCTCTC 59.307 55.000 14.64 10.93 0.00 3.20
456 457 0.402121 GTTGGGTTCTTGGGAGCTCT 59.598 55.000 14.64 0.00 0.00 4.09
457 458 0.110486 TGTTGGGTTCTTGGGAGCTC 59.890 55.000 4.71 4.71 0.00 4.09
458 459 0.779997 ATGTTGGGTTCTTGGGAGCT 59.220 50.000 0.00 0.00 0.00 4.09
460 461 5.076873 TCTTAAATGTTGGGTTCTTGGGAG 58.923 41.667 0.00 0.00 0.00 4.30
461 462 5.068215 TCTTAAATGTTGGGTTCTTGGGA 57.932 39.130 0.00 0.00 0.00 4.37
462 463 4.832823 ACTCTTAAATGTTGGGTTCTTGGG 59.167 41.667 0.00 0.00 0.00 4.12
463 464 6.715264 AGTACTCTTAAATGTTGGGTTCTTGG 59.285 38.462 0.00 0.00 0.00 3.61
466 467 6.238648 CCAGTACTCTTAAATGTTGGGTTCT 58.761 40.000 0.00 0.00 0.00 3.01
467 468 5.106277 GCCAGTACTCTTAAATGTTGGGTTC 60.106 44.000 0.00 0.00 0.00 3.62
468 469 4.765339 GCCAGTACTCTTAAATGTTGGGTT 59.235 41.667 0.00 0.00 0.00 4.11
469 470 4.042934 AGCCAGTACTCTTAAATGTTGGGT 59.957 41.667 0.00 0.00 0.00 4.51
470 471 4.396166 CAGCCAGTACTCTTAAATGTTGGG 59.604 45.833 0.00 0.00 0.00 4.12
471 472 5.245531 TCAGCCAGTACTCTTAAATGTTGG 58.754 41.667 0.00 0.00 0.00 3.77
490 491 6.969473 GGCAACTTGAGAATAGTTATTTCAGC 59.031 38.462 0.00 0.00 34.22 4.26
557 558 6.150307 TGTTTTAAACACTCAGCAAACTCTCA 59.850 34.615 6.41 0.00 36.25 3.27
558 559 6.551736 TGTTTTAAACACTCAGCAAACTCTC 58.448 36.000 6.41 0.00 36.25 3.20
559 560 6.509418 TGTTTTAAACACTCAGCAAACTCT 57.491 33.333 6.41 0.00 36.25 3.24
572 573 3.126514 TCGTTTGCGGAGTGTTTTAAACA 59.873 39.130 6.41 6.41 37.64 2.83
573 574 3.682921 TCGTTTGCGGAGTGTTTTAAAC 58.317 40.909 0.20 0.20 38.89 2.01
574 575 4.555348 ATCGTTTGCGGAGTGTTTTAAA 57.445 36.364 0.00 0.00 38.89 1.52
579 580 1.944024 TCAAATCGTTTGCGGAGTGTT 59.056 42.857 5.83 0.00 40.43 3.32
580 581 1.588674 TCAAATCGTTTGCGGAGTGT 58.411 45.000 5.83 0.00 40.43 3.55
581 582 2.159430 TCATCAAATCGTTTGCGGAGTG 59.841 45.455 5.83 0.00 40.43 3.51
582 583 2.416547 CTCATCAAATCGTTTGCGGAGT 59.583 45.455 14.94 0.00 40.43 3.85
583 584 2.416547 ACTCATCAAATCGTTTGCGGAG 59.583 45.455 18.10 18.10 41.78 4.63
584 585 2.159430 CACTCATCAAATCGTTTGCGGA 59.841 45.455 5.83 5.32 40.43 5.54
585 586 2.508867 CACTCATCAAATCGTTTGCGG 58.491 47.619 5.83 2.17 40.43 5.69
586 587 1.906966 GCACTCATCAAATCGTTTGCG 59.093 47.619 5.83 0.00 40.43 4.85
587 588 3.207474 AGCACTCATCAAATCGTTTGC 57.793 42.857 5.83 0.00 40.43 3.68
588 589 5.931532 AGTAAGCACTCATCAAATCGTTTG 58.068 37.500 4.67 4.67 41.96 2.93
602 603 2.550208 CCCTTTTCACCGAGTAAGCACT 60.550 50.000 0.00 0.00 37.87 4.40
603 604 1.804748 CCCTTTTCACCGAGTAAGCAC 59.195 52.381 0.00 0.00 0.00 4.40
605 606 0.803117 GCCCTTTTCACCGAGTAAGC 59.197 55.000 0.00 0.00 0.00 3.09
606 607 1.076332 CGCCCTTTTCACCGAGTAAG 58.924 55.000 0.00 0.00 0.00 2.34
621 622 2.877691 GCACAACTGGAATCGCCC 59.122 61.111 0.00 0.00 34.97 6.13
649 650 3.380142 TGATTCCGCTTTCTTGTTTTGC 58.620 40.909 0.00 0.00 0.00 3.68
659 660 5.649782 ATCTCATGTTTTGATTCCGCTTT 57.350 34.783 0.00 0.00 32.72 3.51
661 662 6.375455 AGTTTATCTCATGTTTTGATTCCGCT 59.625 34.615 0.00 0.00 32.72 5.52
662 663 6.555315 AGTTTATCTCATGTTTTGATTCCGC 58.445 36.000 0.00 0.00 32.72 5.54
664 665 9.143631 CCAAAGTTTATCTCATGTTTTGATTCC 57.856 33.333 0.00 0.00 32.72 3.01
665 666 8.650714 GCCAAAGTTTATCTCATGTTTTGATTC 58.349 33.333 0.00 0.00 32.72 2.52
668 669 7.288810 AGCCAAAGTTTATCTCATGTTTTGA 57.711 32.000 0.00 0.00 0.00 2.69
688 689 4.255301 CTGTATTGGTAAACGGTAAGCCA 58.745 43.478 0.00 0.00 34.09 4.75
689 690 3.064408 GCTGTATTGGTAAACGGTAAGCC 59.936 47.826 0.00 0.00 0.00 4.35
697 698 6.128580 CCAATTTTGCAGCTGTATTGGTAAAC 60.129 38.462 26.51 8.17 40.07 2.01
703 704 3.929094 ACCCAATTTTGCAGCTGTATTG 58.071 40.909 16.64 17.57 0.00 1.90
705 706 3.324556 ACAACCCAATTTTGCAGCTGTAT 59.675 39.130 16.64 1.34 0.00 2.29
707 708 1.485895 ACAACCCAATTTTGCAGCTGT 59.514 42.857 16.64 0.00 0.00 4.40
709 710 2.093021 ACAACAACCCAATTTTGCAGCT 60.093 40.909 0.00 0.00 0.00 4.24
711 712 4.692228 ACTACAACAACCCAATTTTGCAG 58.308 39.130 0.00 0.00 0.00 4.41
712 713 4.744795 ACTACAACAACCCAATTTTGCA 57.255 36.364 0.00 0.00 0.00 4.08
713 714 4.873259 ACAACTACAACAACCCAATTTTGC 59.127 37.500 0.00 0.00 0.00 3.68
729 949 5.744666 TTTTCCAACACAGCTACAACTAC 57.255 39.130 0.00 0.00 0.00 2.73
738 958 5.099575 CCGGTAATTATTTTCCAACACAGC 58.900 41.667 0.00 0.00 0.00 4.40
739 959 6.262193 ACCGGTAATTATTTTCCAACACAG 57.738 37.500 4.49 0.00 0.00 3.66
742 962 5.243981 TCGACCGGTAATTATTTTCCAACA 58.756 37.500 7.34 0.00 0.00 3.33
743 963 5.799681 TCGACCGGTAATTATTTTCCAAC 57.200 39.130 7.34 0.00 0.00 3.77
744 964 6.654161 TCTTTCGACCGGTAATTATTTTCCAA 59.346 34.615 7.34 0.00 0.00 3.53
750 970 6.600427 ACCAATTCTTTCGACCGGTAATTATT 59.400 34.615 7.34 0.00 0.00 1.40
781 1002 2.456627 AAGCAGTGCTTCTCTCCCA 58.543 52.632 24.73 0.00 46.77 4.37
864 1092 0.665369 CAAAGCGAGGGACGTACGTT 60.665 55.000 23.70 6.57 44.60 3.99
869 1097 1.006102 CAGACAAAGCGAGGGACGT 60.006 57.895 0.00 0.00 44.60 4.34
870 1098 2.383527 GCAGACAAAGCGAGGGACG 61.384 63.158 0.00 0.00 45.66 4.79
896 1124 3.490078 GCTAGCTTATATAGGCTCCTGCG 60.490 52.174 21.42 8.56 39.49 5.18
913 3503 1.362406 GGCTGTTGGTTCGAGCTAGC 61.362 60.000 6.62 6.62 33.03 3.42
967 3583 2.161609 GGTGGTGCTTTCGTTTATCAGG 59.838 50.000 0.00 0.00 0.00 3.86
978 7379 3.265737 TGGTAGATATGTGGTGGTGCTTT 59.734 43.478 0.00 0.00 0.00 3.51
985 7386 2.037121 TCGCCATGGTAGATATGTGGTG 59.963 50.000 14.67 0.00 40.80 4.17
986 7387 2.300152 CTCGCCATGGTAGATATGTGGT 59.700 50.000 14.67 0.00 32.56 4.16
989 7390 1.970640 TGCTCGCCATGGTAGATATGT 59.029 47.619 14.67 0.00 0.00 2.29
992 7393 0.679505 GGTGCTCGCCATGGTAGATA 59.320 55.000 14.67 3.39 0.00 1.98
993 7394 1.337384 TGGTGCTCGCCATGGTAGAT 61.337 55.000 14.67 0.00 32.81 1.98
994 7395 1.987306 TGGTGCTCGCCATGGTAGA 60.987 57.895 14.67 12.39 32.81 2.59
1017 7421 2.787249 CAGGAAATCACAGCGGCG 59.213 61.111 0.51 0.51 0.00 6.46
1023 7427 2.571212 AGAACAACGCAGGAAATCACA 58.429 42.857 0.00 0.00 0.00 3.58
1031 7435 4.151867 GGAAAACTACTAGAACAACGCAGG 59.848 45.833 0.00 0.00 0.00 4.85
1036 7440 5.179555 CCTGCAGGAAAACTACTAGAACAAC 59.820 44.000 29.88 0.00 37.39 3.32
1265 7693 1.064296 GAGTCGACGATGCGGATGT 59.936 57.895 10.46 0.00 0.00 3.06
1284 7712 6.472163 CCTTGACGTTTATGCCAATATTGAAC 59.528 38.462 17.23 11.16 0.00 3.18
1304 7738 1.658114 CACTCGTCGACCACCTTGA 59.342 57.895 10.58 0.00 0.00 3.02
1386 7820 0.550914 TGTTGACCTCACCTTGGCTT 59.449 50.000 0.00 0.00 0.00 4.35
1401 7835 1.208052 AGGTCGGACCATCTGATGTTG 59.792 52.381 27.87 4.82 41.95 3.33
1459 7917 1.007011 GTGCTGAACGATCGAATGACG 60.007 52.381 24.34 5.87 44.09 4.35
1464 7922 1.014044 GCTGGTGCTGAACGATCGAA 61.014 55.000 24.34 5.92 36.03 3.71
1481 7939 1.874231 ACATCGATATCGTCACGAGCT 59.126 47.619 23.61 0.00 39.91 4.09
1490 7953 4.499399 ACTTGAACGTGAACATCGATATCG 59.501 41.667 19.14 19.14 41.45 2.92
1494 7957 4.509970 TGAAACTTGAACGTGAACATCGAT 59.490 37.500 0.00 0.00 0.00 3.59
1495 7958 3.866327 TGAAACTTGAACGTGAACATCGA 59.134 39.130 0.00 0.00 0.00 3.59
1496 7959 4.190304 TGAAACTTGAACGTGAACATCG 57.810 40.909 0.00 0.00 0.00 3.84
1498 7983 3.627577 AGCTGAAACTTGAACGTGAACAT 59.372 39.130 0.00 0.00 0.00 2.71
1500 7985 3.675467 AGCTGAAACTTGAACGTGAAC 57.325 42.857 0.00 0.00 0.00 3.18
1503 7988 4.014847 TGAAAGCTGAAACTTGAACGTG 57.985 40.909 0.00 0.00 0.00 4.49
1504 7989 4.156008 ACTTGAAAGCTGAAACTTGAACGT 59.844 37.500 0.00 0.00 0.00 3.99
1506 7991 5.287035 CACACTTGAAAGCTGAAACTTGAAC 59.713 40.000 0.00 0.00 0.00 3.18
1637 8135 3.996363 CCACATATACATGCATGTACGCT 59.004 43.478 35.53 24.41 45.11 5.07
1700 8199 5.424121 AATCTGACTTGCACACTTACAAC 57.576 39.130 0.00 0.00 0.00 3.32
1770 8283 2.092807 GGGGGTTTTAAGGCACGAGATA 60.093 50.000 0.00 0.00 0.00 1.98
1788 8301 2.487892 GCCATAACGTTTGCGGGG 59.512 61.111 5.91 2.56 43.45 5.73
1821 8335 0.454957 CCATGCTCGACGGCAAAAAG 60.455 55.000 13.63 6.01 45.68 2.27
1833 8347 0.604578 ATGTTTGTGCCACCATGCTC 59.395 50.000 0.00 0.00 0.00 4.26
1835 8349 1.532007 CAAATGTTTGTGCCACCATGC 59.468 47.619 0.00 0.00 33.59 4.06
1854 8368 4.728102 AATCCGAACGCGTCCGCA 62.728 61.111 14.05 0.00 42.06 5.69
1869 8383 4.843728 TCTAGTCTGCGGAAATTTGGAAT 58.156 39.130 0.00 0.00 0.00 3.01
1879 8393 0.837940 TCTAGGCTCTAGTCTGCGGA 59.162 55.000 0.00 0.00 0.00 5.54
1893 8432 0.471617 CCCCTGACATTGCCTCTAGG 59.528 60.000 0.00 0.00 38.53 3.02
1894 8433 1.415659 CTCCCCTGACATTGCCTCTAG 59.584 57.143 0.00 0.00 0.00 2.43
1895 8434 1.500474 CTCCCCTGACATTGCCTCTA 58.500 55.000 0.00 0.00 0.00 2.43
1896 8435 1.277580 CCTCCCCTGACATTGCCTCT 61.278 60.000 0.00 0.00 0.00 3.69
1897 8436 1.225704 CCTCCCCTGACATTGCCTC 59.774 63.158 0.00 0.00 0.00 4.70
1898 8437 1.142688 AACCTCCCCTGACATTGCCT 61.143 55.000 0.00 0.00 0.00 4.75
1899 8438 0.251787 AAACCTCCCCTGACATTGCC 60.252 55.000 0.00 0.00 0.00 4.52
1944 8487 1.745264 AGCCCTCGAGCTTCTATGC 59.255 57.895 6.99 0.43 41.41 3.14
1977 8526 1.742761 CGATTGACACATGCCTCCTT 58.257 50.000 0.00 0.00 0.00 3.36
2021 8570 7.609056 CCATGAAGATGTCAAATCTTTCCTTT 58.391 34.615 0.00 0.00 40.50 3.11
2022 8571 6.350780 GCCATGAAGATGTCAAATCTTTCCTT 60.351 38.462 0.00 0.00 40.50 3.36
2023 8572 5.126707 GCCATGAAGATGTCAAATCTTTCCT 59.873 40.000 0.00 0.00 40.50 3.36
2027 8576 3.379372 CCGCCATGAAGATGTCAAATCTT 59.621 43.478 0.00 0.00 40.50 2.40
2030 8579 1.406539 GCCGCCATGAAGATGTCAAAT 59.593 47.619 0.00 0.00 40.50 2.32
2070 8621 5.241506 TGAGCTTTGACTTTTGATTTCCGAT 59.758 36.000 0.00 0.00 0.00 4.18
2138 8691 0.108585 TTGGTTTCCTCTGAAGCGCT 59.891 50.000 2.64 2.64 32.94 5.92
2139 8692 0.951558 TTTGGTTTCCTCTGAAGCGC 59.048 50.000 0.00 0.00 32.94 5.92
2156 8709 4.286549 TCCATCTTGATGGCCAACATTTTT 59.713 37.500 17.34 0.00 40.72 1.94
2199 8752 2.644992 GGCTTGCACGACCTTTGG 59.355 61.111 0.00 0.00 0.00 3.28
2237 8790 1.656652 CTACCTCATTCGGCAAGTGG 58.343 55.000 0.00 0.00 0.00 4.00
2248 8801 1.615883 CCTATGTCTGCGCTACCTCAT 59.384 52.381 9.73 8.90 0.00 2.90
2249 8802 1.032794 CCTATGTCTGCGCTACCTCA 58.967 55.000 9.73 1.21 0.00 3.86
2262 8815 1.522569 GCTCCTCCGCAACCTATGT 59.477 57.895 0.00 0.00 0.00 2.29
2265 8818 2.284331 TGGCTCCTCCGCAACCTA 60.284 61.111 0.00 0.00 37.80 3.08
2289 8842 1.293062 ATGCCTCCCACTCATCACTT 58.707 50.000 0.00 0.00 0.00 3.16
2299 8852 3.330701 AGACAAGTTTTCTATGCCTCCCA 59.669 43.478 0.00 0.00 0.00 4.37
2355 8912 0.243636 AGCTTTTACATGCGCCCAAC 59.756 50.000 4.18 0.00 0.00 3.77
2379 8936 3.765026 ACAACCAAACACAACGAATGTC 58.235 40.909 0.00 0.00 41.46 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.