Multiple sequence alignment - TraesCS3B01G035900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G035900 chr3B 100.000 4343 0 0 1 4343 17612824 17617166 0.000000e+00 8021.0
1 TraesCS3B01G035900 chr3B 95.335 493 19 4 1 489 730287588 730287096 0.000000e+00 780.0
2 TraesCS3B01G035900 chr3A 84.083 1822 193 58 2572 4343 24889992 24888218 0.000000e+00 1668.0
3 TraesCS3B01G035900 chr3A 92.834 614 41 2 892 1503 24891856 24891244 0.000000e+00 887.0
4 TraesCS3B01G035900 chr3A 84.615 507 51 16 1560 2044 24891162 24890661 3.040000e-131 479.0
5 TraesCS3B01G035900 chr3A 91.398 279 20 4 857 1134 24894405 24894130 3.170000e-101 379.0
6 TraesCS3B01G035900 chr3A 90.952 210 19 0 2296 2505 24890353 24890144 2.560000e-72 283.0
7 TraesCS3B01G035900 chr2B 97.616 797 17 2 1 796 549652215 549651420 0.000000e+00 1365.0
8 TraesCS3B01G035900 chr3D 94.400 750 31 4 2878 3619 12276443 12277189 0.000000e+00 1142.0
9 TraesCS3B01G035900 chr3D 93.158 760 38 7 2090 2840 12275691 12276445 0.000000e+00 1103.0
10 TraesCS3B01G035900 chr3D 87.810 886 63 20 903 1756 12274341 12275213 0.000000e+00 996.0
11 TraesCS3B01G035900 chr3D 86.621 725 44 24 3604 4289 12277611 12278321 0.000000e+00 752.0
12 TraesCS3B01G035900 chr3D 92.926 311 20 2 1778 2086 12275331 12275641 6.620000e-123 451.0
13 TraesCS3B01G035900 chr3D 96.386 83 3 0 4261 4343 12230629 12230711 2.110000e-28 137.0
14 TraesCS3B01G035900 chr4A 91.924 582 37 8 1 573 740518686 740519266 0.000000e+00 806.0
15 TraesCS3B01G035900 chr4A 96.210 343 10 3 332 672 740519149 740519490 3.790000e-155 558.0
16 TraesCS3B01G035900 chr4A 88.571 175 12 2 1 174 719382705 719382872 5.690000e-49 206.0
17 TraesCS3B01G035900 chr4B 96.146 493 15 4 1 489 245459822 245460314 0.000000e+00 802.0
18 TraesCS3B01G035900 chr4B 96.596 470 11 4 328 793 245460216 245460684 0.000000e+00 774.0
19 TraesCS3B01G035900 chr6B 95.122 492 20 4 1 489 122684747 122684257 0.000000e+00 773.0
20 TraesCS3B01G035900 chr6B 95.309 469 17 3 332 796 515092236 515091769 0.000000e+00 739.0
21 TraesCS3B01G035900 chr6B 94.850 466 22 2 332 796 122684351 122683887 0.000000e+00 726.0
22 TraesCS3B01G035900 chr6B 90.244 492 22 11 1 489 515092610 515092142 1.720000e-173 619.0
23 TraesCS3B01G035900 chr6B 78.788 165 19 15 333 490 46270649 46270804 3.570000e-16 97.1
24 TraesCS3B01G035900 chr7B 94.919 492 21 4 1 489 144477881 144478371 0.000000e+00 767.0
25 TraesCS3B01G035900 chr7B 96.537 462 15 1 332 793 144478278 144478738 0.000000e+00 763.0
26 TraesCS3B01G035900 chr1B 94.694 490 21 5 1 487 665286167 665286654 0.000000e+00 756.0
27 TraesCS3B01G035900 chr1B 95.905 464 16 3 332 793 27239751 27240213 0.000000e+00 749.0
28 TraesCS3B01G035900 chr1B 95.690 464 16 4 332 793 665286562 665287023 0.000000e+00 743.0
29 TraesCS3B01G035900 chr1B 91.260 492 19 10 1 489 27239375 27239845 0.000000e+00 649.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G035900 chr3B 17612824 17617166 4342 False 8021.0 8021 100.0000 1 4343 1 chr3B.!!$F1 4342
1 TraesCS3B01G035900 chr3A 24888218 24894405 6187 True 739.2 1668 88.7764 857 4343 5 chr3A.!!$R1 3486
2 TraesCS3B01G035900 chr2B 549651420 549652215 795 True 1365.0 1365 97.6160 1 796 1 chr2B.!!$R1 795
3 TraesCS3B01G035900 chr3D 12274341 12278321 3980 False 888.8 1142 90.9830 903 4289 5 chr3D.!!$F2 3386
4 TraesCS3B01G035900 chr4A 740518686 740519490 804 False 682.0 806 94.0670 1 672 2 chr4A.!!$F2 671
5 TraesCS3B01G035900 chr4B 245459822 245460684 862 False 788.0 802 96.3710 1 793 2 chr4B.!!$F1 792
6 TraesCS3B01G035900 chr6B 122683887 122684747 860 True 749.5 773 94.9860 1 796 2 chr6B.!!$R1 795
7 TraesCS3B01G035900 chr6B 515091769 515092610 841 True 679.0 739 92.7765 1 796 2 chr6B.!!$R2 795
8 TraesCS3B01G035900 chr7B 144477881 144478738 857 False 765.0 767 95.7280 1 793 2 chr7B.!!$F1 792
9 TraesCS3B01G035900 chr1B 665286167 665287023 856 False 749.5 756 95.1920 1 793 2 chr1B.!!$F2 792
10 TraesCS3B01G035900 chr1B 27239375 27240213 838 False 699.0 749 93.5825 1 793 2 chr1B.!!$F1 792

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
838 1022 0.031994 TTTGAAAAAGCAGCTCCGGC 59.968 50.0 0.0 0.0 39.06 6.13 F
956 3654 0.529992 GCTCGGTCCAACCTTATCCG 60.530 60.0 0.0 0.0 42.12 4.18 F
2570 5605 0.030603 ATCTCCCCTCTCCCTTCACC 60.031 60.0 0.0 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1874 4707 0.391661 CGCCTGCATGGTTCACTAGT 60.392 55.0 0.00 0.00 38.35 2.57 R
2816 5851 2.453983 TGCAATTTAAGTGGCAAGGC 57.546 45.0 0.00 0.00 32.54 4.35 R
3475 6532 0.179275 GCACACGCGTATGCATATCG 60.179 55.0 35.35 21.84 42.97 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
198 239 9.487790 TCCAAGAATTAATGGAAAATGTTGAAC 57.512 29.630 8.81 0.00 42.61 3.18
697 880 3.314693 TCCTCCCTTGTAGTGTCAAGTT 58.685 45.455 5.86 0.00 42.01 2.66
799 983 4.681978 GGCGTGTGAGCTCCCGTT 62.682 66.667 12.15 0.00 37.29 4.44
800 984 3.112709 GCGTGTGAGCTCCCGTTC 61.113 66.667 12.15 0.00 0.00 3.95
801 985 2.651361 CGTGTGAGCTCCCGTTCT 59.349 61.111 12.15 0.00 0.00 3.01
802 986 1.444553 CGTGTGAGCTCCCGTTCTC 60.445 63.158 12.15 0.00 0.00 2.87
803 987 1.079750 GTGTGAGCTCCCGTTCTCC 60.080 63.158 12.15 0.00 0.00 3.71
804 988 1.228894 TGTGAGCTCCCGTTCTCCT 60.229 57.895 12.15 0.00 0.00 3.69
805 989 0.832135 TGTGAGCTCCCGTTCTCCTT 60.832 55.000 12.15 0.00 0.00 3.36
806 990 0.390472 GTGAGCTCCCGTTCTCCTTG 60.390 60.000 12.15 0.00 0.00 3.61
807 991 0.832135 TGAGCTCCCGTTCTCCTTGT 60.832 55.000 12.15 0.00 0.00 3.16
808 992 0.390472 GAGCTCCCGTTCTCCTTGTG 60.390 60.000 0.87 0.00 0.00 3.33
809 993 1.376037 GCTCCCGTTCTCCTTGTGG 60.376 63.158 0.00 0.00 0.00 4.17
810 994 2.058675 CTCCCGTTCTCCTTGTGGT 58.941 57.895 0.00 0.00 34.23 4.16
811 995 0.396811 CTCCCGTTCTCCTTGTGGTT 59.603 55.000 0.00 0.00 34.23 3.67
812 996 0.107831 TCCCGTTCTCCTTGTGGTTG 59.892 55.000 0.00 0.00 34.23 3.77
813 997 1.515521 CCCGTTCTCCTTGTGGTTGC 61.516 60.000 0.00 0.00 34.23 4.17
814 998 1.515521 CCGTTCTCCTTGTGGTTGCC 61.516 60.000 0.00 0.00 34.23 4.52
815 999 1.841663 CGTTCTCCTTGTGGTTGCCG 61.842 60.000 0.00 0.00 34.23 5.69
816 1000 0.818040 GTTCTCCTTGTGGTTGCCGT 60.818 55.000 0.00 0.00 34.23 5.68
817 1001 0.817634 TTCTCCTTGTGGTTGCCGTG 60.818 55.000 0.00 0.00 34.23 4.94
818 1002 2.203280 TCCTTGTGGTTGCCGTGG 60.203 61.111 0.00 0.00 34.23 4.94
819 1003 2.518349 CCTTGTGGTTGCCGTGGT 60.518 61.111 0.00 0.00 0.00 4.16
820 1004 2.124693 CCTTGTGGTTGCCGTGGTT 61.125 57.895 0.00 0.00 0.00 3.67
821 1005 1.671901 CCTTGTGGTTGCCGTGGTTT 61.672 55.000 0.00 0.00 0.00 3.27
822 1006 0.527385 CTTGTGGTTGCCGTGGTTTG 60.527 55.000 0.00 0.00 0.00 2.93
823 1007 0.965866 TTGTGGTTGCCGTGGTTTGA 60.966 50.000 0.00 0.00 0.00 2.69
824 1008 0.965866 TGTGGTTGCCGTGGTTTGAA 60.966 50.000 0.00 0.00 0.00 2.69
825 1009 0.173708 GTGGTTGCCGTGGTTTGAAA 59.826 50.000 0.00 0.00 0.00 2.69
826 1010 0.895530 TGGTTGCCGTGGTTTGAAAA 59.104 45.000 0.00 0.00 0.00 2.29
827 1011 1.275291 TGGTTGCCGTGGTTTGAAAAA 59.725 42.857 0.00 0.00 0.00 1.94
828 1012 1.930503 GGTTGCCGTGGTTTGAAAAAG 59.069 47.619 0.00 0.00 0.00 2.27
829 1013 1.326245 GTTGCCGTGGTTTGAAAAAGC 59.674 47.619 0.00 0.00 0.00 3.51
830 1014 0.532573 TGCCGTGGTTTGAAAAAGCA 59.467 45.000 0.73 0.73 0.00 3.91
831 1015 1.208259 GCCGTGGTTTGAAAAAGCAG 58.792 50.000 4.95 0.00 0.00 4.24
832 1016 1.208259 CCGTGGTTTGAAAAAGCAGC 58.792 50.000 4.95 0.00 0.00 5.25
833 1017 1.202405 CCGTGGTTTGAAAAAGCAGCT 60.202 47.619 4.95 0.00 0.00 4.24
834 1018 2.119457 CGTGGTTTGAAAAAGCAGCTC 58.881 47.619 0.00 0.00 0.00 4.09
835 1019 2.473816 GTGGTTTGAAAAAGCAGCTCC 58.526 47.619 0.00 0.00 0.00 4.70
836 1020 1.066908 TGGTTTGAAAAAGCAGCTCCG 59.933 47.619 0.00 0.00 0.00 4.63
837 1021 1.602920 GGTTTGAAAAAGCAGCTCCGG 60.603 52.381 0.00 0.00 0.00 5.14
838 1022 0.031994 TTTGAAAAAGCAGCTCCGGC 59.968 50.000 0.00 0.00 39.06 6.13
839 1023 2.128853 TTGAAAAAGCAGCTCCGGCG 62.129 55.000 0.00 0.00 44.37 6.46
840 1024 2.594592 AAAAAGCAGCTCCGGCGT 60.595 55.556 6.01 0.00 44.37 5.68
841 1025 2.514505 GAAAAAGCAGCTCCGGCGTC 62.515 60.000 6.01 0.00 44.37 5.19
849 1033 4.933064 CTCCGGCGTCGATGGAGC 62.933 72.222 12.93 1.73 42.53 4.70
870 1054 1.498865 GCGCATACATGGAAGACGGG 61.499 60.000 0.30 0.00 0.00 5.28
878 1062 4.452733 GGAAGACGGGCCGAGTGG 62.453 72.222 35.78 2.65 38.77 4.00
899 3597 1.284785 TGAATGAGGCCCAGGTAAAGG 59.715 52.381 0.00 0.00 0.00 3.11
917 3615 2.743718 CTGACAGGCCGACACCTT 59.256 61.111 0.00 0.00 38.26 3.50
938 3636 3.384532 CCAACTGGTGGGCCATGC 61.385 66.667 10.70 0.00 45.05 4.06
956 3654 0.529992 GCTCGGTCCAACCTTATCCG 60.530 60.000 0.00 0.00 42.12 4.18
963 3661 1.064758 TCCAACCTTATCCGCTGCAAT 60.065 47.619 0.00 0.00 0.00 3.56
1125 3823 1.671742 GTCCCCGTGCTTCAAGAGA 59.328 57.895 0.00 0.00 0.00 3.10
1269 3967 1.980052 CGTAAGTTCAGGCCCTCCA 59.020 57.895 0.00 0.00 33.74 3.86
1344 4042 2.941583 GCTTCCCTTCCCCACCCT 60.942 66.667 0.00 0.00 0.00 4.34
1372 4070 3.918220 CTCAACGCCGCGATGCTC 61.918 66.667 21.79 0.00 30.00 4.26
1475 4175 1.416401 TCCACCAGAACAAGGTCAGTC 59.584 52.381 0.00 0.00 37.23 3.51
1503 4203 8.251721 GTGGTACTGAACTACTGAATAGTGAAT 58.748 37.037 0.00 0.00 43.79 2.57
1504 4204 9.470399 TGGTACTGAACTACTGAATAGTGAATA 57.530 33.333 0.00 0.00 43.79 1.75
1560 4289 7.762159 TCTTCATATGTTGATGCGTTGTAACTA 59.238 33.333 1.90 0.00 33.34 2.24
1561 4290 7.835634 TCATATGTTGATGCGTTGTAACTAA 57.164 32.000 1.90 0.00 0.00 2.24
1562 4291 7.680982 TCATATGTTGATGCGTTGTAACTAAC 58.319 34.615 1.90 0.00 0.00 2.34
1563 4292 7.547722 TCATATGTTGATGCGTTGTAACTAACT 59.452 33.333 1.90 0.00 0.00 2.24
1674 4407 2.266055 CTCGGCCTCCCTGTTGTC 59.734 66.667 0.00 0.00 0.00 3.18
1679 4412 1.374758 GCCTCCCTGTTGTCGAGTG 60.375 63.158 0.00 0.00 0.00 3.51
1683 4416 1.961277 CCCTGTTGTCGAGTGCACC 60.961 63.158 14.63 4.10 0.00 5.01
1689 4422 2.733593 GTCGAGTGCACCGTCACC 60.734 66.667 21.61 9.32 37.68 4.02
1716 4449 1.678728 CCTTTGGAGGTGCGCATTCTA 60.679 52.381 15.91 10.26 38.32 2.10
1727 4463 4.260375 GGTGCGCATTCTATTCAAGTAGTG 60.260 45.833 15.91 0.00 0.00 2.74
1728 4464 3.309682 TGCGCATTCTATTCAAGTAGTGC 59.690 43.478 5.66 0.00 0.00 4.40
1729 4465 3.557595 GCGCATTCTATTCAAGTAGTGCT 59.442 43.478 0.30 0.00 0.00 4.40
1756 4493 7.340743 TGAAAAGACAACTCAATTCCTTGGTAA 59.659 33.333 0.00 0.00 32.95 2.85
1757 4494 7.839680 AAAGACAACTCAATTCCTTGGTAAT 57.160 32.000 0.00 0.00 32.95 1.89
1758 4495 6.824305 AGACAACTCAATTCCTTGGTAATG 57.176 37.500 0.00 0.00 32.95 1.90
1759 4496 6.306987 AGACAACTCAATTCCTTGGTAATGT 58.693 36.000 0.00 0.00 32.95 2.71
1760 4497 7.458397 AGACAACTCAATTCCTTGGTAATGTA 58.542 34.615 0.00 0.00 32.95 2.29
1761 4498 7.390718 AGACAACTCAATTCCTTGGTAATGTAC 59.609 37.037 0.00 0.00 32.95 2.90
1764 4501 7.448748 ACTCAATTCCTTGGTAATGTACAAC 57.551 36.000 0.00 0.00 32.95 3.32
1765 4502 7.231467 ACTCAATTCCTTGGTAATGTACAACT 58.769 34.615 0.00 0.00 32.95 3.16
1772 4605 8.556213 TCCTTGGTAATGTACAACTTATGAAC 57.444 34.615 0.00 0.00 0.00 3.18
1774 4607 9.010029 CCTTGGTAATGTACAACTTATGAACTT 57.990 33.333 0.00 0.00 0.00 2.66
1782 4615 8.310406 TGTACAACTTATGAACTTCTCATGTG 57.690 34.615 0.00 0.00 44.84 3.21
1783 4616 6.246420 ACAACTTATGAACTTCTCATGTGC 57.754 37.500 0.00 0.00 44.84 4.57
1799 4632 1.269166 GTGCGGTGTAGATCAAGACG 58.731 55.000 0.00 0.00 0.00 4.18
1817 4650 1.683790 CGTGGTTCGATCCGAAGTGC 61.684 60.000 7.99 0.00 46.54 4.40
1849 4682 2.434359 GAGCGTTGGGAACTCCGG 60.434 66.667 0.00 0.00 38.76 5.14
1925 4758 2.331451 GTTGTTGCGCGCTTTCCT 59.669 55.556 33.29 0.00 0.00 3.36
1971 4804 5.625568 TTGCTATAGGGAAGGAAAGGTAC 57.374 43.478 1.04 0.00 0.00 3.34
1993 4827 4.833380 ACTTCCTACTGCTCAAGTACTTGA 59.167 41.667 31.11 31.11 46.27 3.02
2047 4882 7.198390 CCTTGTTGTATCTGATATTTGCAAGG 58.802 38.462 22.93 22.93 41.79 3.61
2086 4927 5.530915 TCCCTTGTTATCCTTTTGATATGCG 59.469 40.000 0.00 0.00 35.87 4.73
2131 5018 2.025156 CATGCATTCTTCGGCGCC 59.975 61.111 19.07 19.07 0.00 6.53
2138 5025 0.107410 ATTCTTCGGCGCCCATGTAA 60.107 50.000 23.46 9.64 0.00 2.41
2241 5167 5.830457 CAGTTGTGGAGACTGATATCCTAGA 59.170 44.000 0.00 0.00 45.72 2.43
2242 5168 6.493115 CAGTTGTGGAGACTGATATCCTAGAT 59.507 42.308 0.00 0.00 45.72 1.98
2243 5169 6.493115 AGTTGTGGAGACTGATATCCTAGATG 59.507 42.308 0.00 0.00 37.11 2.90
2244 5170 6.206180 TGTGGAGACTGATATCCTAGATGA 57.794 41.667 0.00 0.00 37.11 2.92
2246 5172 6.718912 TGTGGAGACTGATATCCTAGATGAAG 59.281 42.308 0.00 0.00 37.11 3.02
2247 5173 6.945435 GTGGAGACTGATATCCTAGATGAAGA 59.055 42.308 0.00 0.00 37.11 2.87
2248 5174 7.450014 GTGGAGACTGATATCCTAGATGAAGAA 59.550 40.741 0.00 0.00 37.11 2.52
2249 5175 8.176105 TGGAGACTGATATCCTAGATGAAGAAT 58.824 37.037 0.00 0.00 37.11 2.40
2269 5195 8.697507 AAGAATTTAATATACCCCTCAGCTTG 57.302 34.615 0.00 0.00 0.00 4.01
2279 5205 3.826729 ACCCCTCAGCTTGTATTTTGTTC 59.173 43.478 0.00 0.00 0.00 3.18
2341 5272 4.639310 GGAGTTGAAGCAATCATCAGTCAT 59.361 41.667 0.00 0.00 38.03 3.06
2360 5291 8.950210 TCAGTCATCTAATTGTGAAAGAATTCC 58.050 33.333 0.65 0.00 39.26 3.01
2457 5388 8.870116 TGCTGAAGAGGTATTTATGCTCTTATA 58.130 33.333 0.00 0.00 34.91 0.98
2486 5417 7.878477 ATTGTTTGTGCATCATTGAGTTAAG 57.122 32.000 0.00 0.00 0.00 1.85
2510 5442 8.588290 AGTAATTACAAGTGAAATGCCCAATA 57.412 30.769 17.65 0.00 0.00 1.90
2545 5579 9.015367 AGGAGTACATACTACATAGTGCTTATG 57.985 37.037 4.11 7.10 39.68 1.90
2558 5593 4.723309 AGTGCTTATGATTTCATCTCCCC 58.277 43.478 0.00 0.00 37.76 4.81
2570 5605 0.030603 ATCTCCCCTCTCCCTTCACC 60.031 60.000 0.00 0.00 0.00 4.02
2580 5615 4.013050 CTCTCCCTTCACCCTTTTTGATC 58.987 47.826 0.00 0.00 0.00 2.92
2667 5702 0.033503 TATGTGACGAGGAGGCAGGA 60.034 55.000 0.00 0.00 39.56 3.86
2686 5721 2.375146 GAAACCTTGGACAGTGGTTGT 58.625 47.619 10.88 4.34 42.53 3.32
2698 5733 3.118738 ACAGTGGTTGTATAGTGGCTAGC 60.119 47.826 6.04 6.04 38.56 3.42
2816 5851 4.152938 CCTGTGCATATTACGGATGATGTG 59.847 45.833 0.00 0.00 0.00 3.21
2817 5852 3.498018 TGTGCATATTACGGATGATGTGC 59.502 43.478 0.00 0.00 38.80 4.57
2865 5913 4.641989 GTGGTGCTTGGATTAGTTCATCAT 59.358 41.667 0.00 0.00 0.00 2.45
2876 5924 7.141363 GGATTAGTTCATCATTGTATGCCAAC 58.859 38.462 0.00 0.00 35.44 3.77
2877 5925 7.201812 GGATTAGTTCATCATTGTATGCCAACA 60.202 37.037 0.00 0.00 35.44 3.33
2878 5926 7.643569 TTAGTTCATCATTGTATGCCAACAT 57.356 32.000 0.00 0.00 40.49 2.71
2906 5954 5.788450 AGTGAAGCTAATGATAGAATCCCG 58.212 41.667 0.00 0.00 0.00 5.14
2922 5970 1.071071 TCCCGAGTGTAACCCTTTGTG 59.929 52.381 0.00 0.00 37.80 3.33
2928 5976 5.334569 CCGAGTGTAACCCTTTGTGTTTATG 60.335 44.000 0.00 0.00 37.80 1.90
2929 5977 5.237779 CGAGTGTAACCCTTTGTGTTTATGT 59.762 40.000 0.00 0.00 37.80 2.29
2984 6035 3.201930 TCTGCAGCCCTTAATCATTACCA 59.798 43.478 9.47 0.00 0.00 3.25
3031 6082 5.220854 CGATGACACCCCTGATAAATTCAAC 60.221 44.000 0.00 0.00 32.78 3.18
3124 6175 6.621316 TGTATTCGAGAGATCCTTAGACAC 57.379 41.667 0.00 0.00 41.60 3.67
3125 6176 5.531659 TGTATTCGAGAGATCCTTAGACACC 59.468 44.000 0.00 0.00 41.60 4.16
3127 6178 3.964411 TCGAGAGATCCTTAGACACCAA 58.036 45.455 0.00 0.00 33.31 3.67
3128 6179 4.537751 TCGAGAGATCCTTAGACACCAAT 58.462 43.478 0.00 0.00 33.31 3.16
3129 6180 4.956700 TCGAGAGATCCTTAGACACCAATT 59.043 41.667 0.00 0.00 33.31 2.32
3130 6181 5.422331 TCGAGAGATCCTTAGACACCAATTT 59.578 40.000 0.00 0.00 33.31 1.82
3131 6182 6.070767 TCGAGAGATCCTTAGACACCAATTTT 60.071 38.462 0.00 0.00 33.31 1.82
3219 6275 3.132289 CAGGCATCAATCCAAATGCTCTT 59.868 43.478 7.21 0.00 45.95 2.85
3295 6351 2.023404 TCTTCTGGTCCTAGGCCATACA 60.023 50.000 20.87 9.05 35.19 2.29
3305 6361 1.207791 AGGCCATACACCTCTTCTGG 58.792 55.000 5.01 0.00 28.76 3.86
3475 6532 4.137543 GTCACCCCATGAGGAATTACATC 58.862 47.826 0.00 0.00 38.28 3.06
3488 6545 5.520288 AGGAATTACATCGATATGCATACGC 59.480 40.000 8.99 3.44 36.50 4.42
3491 6548 1.985684 ACATCGATATGCATACGCGTG 59.014 47.619 24.59 20.82 42.97 5.34
3593 6651 1.878522 GTGCTATGCTCACCGTCCG 60.879 63.158 0.00 0.00 0.00 4.79
3682 7177 2.096013 CGTCGACTCTCTGATGTTGCTA 59.904 50.000 14.70 0.00 0.00 3.49
3687 7182 4.050553 GACTCTCTGATGTTGCTATCTGC 58.949 47.826 0.00 0.00 43.25 4.26
3688 7183 3.051327 CTCTCTGATGTTGCTATCTGCG 58.949 50.000 0.00 0.00 46.63 5.18
3689 7184 2.428530 TCTCTGATGTTGCTATCTGCGT 59.571 45.455 0.00 0.00 46.63 5.24
3690 7185 2.793790 CTCTGATGTTGCTATCTGCGTC 59.206 50.000 0.00 0.00 46.63 5.19
3692 7187 3.632145 TCTGATGTTGCTATCTGCGTCTA 59.368 43.478 0.00 0.00 46.63 2.59
3693 7188 3.706698 TGATGTTGCTATCTGCGTCTAC 58.293 45.455 0.00 0.00 46.63 2.59
3694 7189 3.381590 TGATGTTGCTATCTGCGTCTACT 59.618 43.478 0.00 0.00 46.63 2.57
3695 7190 3.422417 TGTTGCTATCTGCGTCTACTC 57.578 47.619 0.00 0.00 46.63 2.59
3696 7191 2.752903 TGTTGCTATCTGCGTCTACTCA 59.247 45.455 0.00 0.00 46.63 3.41
3697 7192 3.181496 TGTTGCTATCTGCGTCTACTCAG 60.181 47.826 0.00 0.00 46.63 3.35
3698 7193 2.919228 TGCTATCTGCGTCTACTCAGA 58.081 47.619 5.35 5.35 46.63 3.27
3700 7195 3.313803 TGCTATCTGCGTCTACTCAGAAG 59.686 47.826 6.87 7.19 46.63 2.85
3710 7215 5.494618 CGTCTACTCAGAAGTCAGAATACG 58.505 45.833 0.00 0.00 36.92 3.06
3790 7295 6.271391 TCAAACTGGACCTTCAACCTTAGATA 59.729 38.462 0.00 0.00 0.00 1.98
3825 7330 1.130373 ACTTGCTGTTCGTGTGTGTTG 59.870 47.619 0.00 0.00 0.00 3.33
3830 7335 0.799393 TGTTCGTGTGTGTTGGTGTG 59.201 50.000 0.00 0.00 0.00 3.82
3881 7410 3.290710 ACCTGATTTGCACTTCACAAGT 58.709 40.909 0.00 0.00 44.06 3.16
3999 7529 7.657761 TGTCATCTTTCTTGGTTCTAGAAGTTC 59.342 37.037 5.12 0.00 33.49 3.01
4026 7556 2.200081 AGATGATAGGTTGGTGGCAGT 58.800 47.619 0.00 0.00 0.00 4.40
4148 7689 5.424757 TGCAGCATAGTTAATTTACTCCGT 58.575 37.500 0.00 0.00 0.00 4.69
4190 7732 7.280205 AGGTACTTACTTTGTCACTGTCAAAAG 59.720 37.037 3.55 5.35 32.18 2.27
4195 7737 5.258051 ACTTTGTCACTGTCAAAAGGGTAA 58.742 37.500 3.55 0.00 34.96 2.85
4199 7741 4.080807 TGTCACTGTCAAAAGGGTAACAGA 60.081 41.667 8.24 0.00 41.26 3.41
4200 7742 5.063880 GTCACTGTCAAAAGGGTAACAGAT 58.936 41.667 8.24 0.00 41.26 2.90
4208 7751 7.069331 TGTCAAAAGGGTAACAGATTGAACAAT 59.931 33.333 0.00 0.00 35.43 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 121 4.748503 TGTTTCGAATATCGTACGCAAG 57.251 40.909 11.24 0.00 41.35 4.01
697 880 2.292569 GGTACAGTCACTCGAACTCACA 59.707 50.000 0.00 0.00 0.00 3.58
793 977 0.107831 CAACCACAAGGAGAACGGGA 59.892 55.000 0.00 0.00 38.69 5.14
796 980 1.841663 CGGCAACCACAAGGAGAACG 61.842 60.000 0.00 0.00 38.69 3.95
797 981 0.818040 ACGGCAACCACAAGGAGAAC 60.818 55.000 0.00 0.00 38.69 3.01
798 982 0.817634 CACGGCAACCACAAGGAGAA 60.818 55.000 0.00 0.00 38.69 2.87
799 983 1.227823 CACGGCAACCACAAGGAGA 60.228 57.895 0.00 0.00 38.69 3.71
800 984 2.260869 CCACGGCAACCACAAGGAG 61.261 63.158 0.00 0.00 38.69 3.69
801 985 2.203280 CCACGGCAACCACAAGGA 60.203 61.111 0.00 0.00 38.69 3.36
802 986 1.671901 AAACCACGGCAACCACAAGG 61.672 55.000 0.00 0.00 42.21 3.61
803 987 0.527385 CAAACCACGGCAACCACAAG 60.527 55.000 0.00 0.00 0.00 3.16
804 988 0.965866 TCAAACCACGGCAACCACAA 60.966 50.000 0.00 0.00 0.00 3.33
805 989 0.965866 TTCAAACCACGGCAACCACA 60.966 50.000 0.00 0.00 0.00 4.17
806 990 0.173708 TTTCAAACCACGGCAACCAC 59.826 50.000 0.00 0.00 0.00 4.16
807 991 0.895530 TTTTCAAACCACGGCAACCA 59.104 45.000 0.00 0.00 0.00 3.67
808 992 1.930503 CTTTTTCAAACCACGGCAACC 59.069 47.619 0.00 0.00 0.00 3.77
809 993 1.326245 GCTTTTTCAAACCACGGCAAC 59.674 47.619 0.00 0.00 0.00 4.17
810 994 1.066858 TGCTTTTTCAAACCACGGCAA 60.067 42.857 0.00 0.00 0.00 4.52
811 995 0.532573 TGCTTTTTCAAACCACGGCA 59.467 45.000 0.00 0.00 0.00 5.69
812 996 1.208259 CTGCTTTTTCAAACCACGGC 58.792 50.000 0.00 0.00 0.00 5.68
813 997 1.202405 AGCTGCTTTTTCAAACCACGG 60.202 47.619 0.00 0.00 0.00 4.94
814 998 2.119457 GAGCTGCTTTTTCAAACCACG 58.881 47.619 2.53 0.00 0.00 4.94
815 999 2.473816 GGAGCTGCTTTTTCAAACCAC 58.526 47.619 2.53 0.00 0.00 4.16
816 1000 1.066908 CGGAGCTGCTTTTTCAAACCA 59.933 47.619 2.53 0.00 0.00 3.67
817 1001 1.602920 CCGGAGCTGCTTTTTCAAACC 60.603 52.381 2.53 0.00 0.00 3.27
818 1002 1.770957 CCGGAGCTGCTTTTTCAAAC 58.229 50.000 2.53 0.00 0.00 2.93
819 1003 0.031994 GCCGGAGCTGCTTTTTCAAA 59.968 50.000 5.05 0.00 35.50 2.69
820 1004 1.659794 GCCGGAGCTGCTTTTTCAA 59.340 52.632 5.05 0.00 35.50 2.69
821 1005 2.616330 CGCCGGAGCTGCTTTTTCA 61.616 57.895 5.05 0.00 36.60 2.69
822 1006 2.176792 CGCCGGAGCTGCTTTTTC 59.823 61.111 5.05 0.00 36.60 2.29
823 1007 2.594592 ACGCCGGAGCTGCTTTTT 60.595 55.556 5.05 0.00 36.60 1.94
824 1008 3.050275 GACGCCGGAGCTGCTTTT 61.050 61.111 5.05 0.00 36.60 2.27
831 1015 4.933064 CTCCATCGACGCCGGAGC 62.933 72.222 5.05 0.00 39.95 4.70
839 1023 3.841379 TATGCGCCGCTCCATCGAC 62.841 63.158 11.67 0.00 0.00 4.20
840 1024 3.601685 TATGCGCCGCTCCATCGA 61.602 61.111 11.67 0.00 0.00 3.59
841 1025 3.406361 GTATGCGCCGCTCCATCG 61.406 66.667 11.67 0.00 0.00 3.84
842 1026 1.669115 ATGTATGCGCCGCTCCATC 60.669 57.895 11.67 0.00 0.00 3.51
843 1027 1.962822 CATGTATGCGCCGCTCCAT 60.963 57.895 11.67 6.76 0.00 3.41
844 1028 2.588596 CATGTATGCGCCGCTCCA 60.589 61.111 11.67 4.38 0.00 3.86
845 1029 3.349006 CCATGTATGCGCCGCTCC 61.349 66.667 11.67 0.00 0.00 4.70
846 1030 1.835483 CTTCCATGTATGCGCCGCTC 61.835 60.000 11.67 1.36 0.00 5.03
847 1031 1.889105 CTTCCATGTATGCGCCGCT 60.889 57.895 11.67 0.00 0.00 5.52
848 1032 1.887242 TCTTCCATGTATGCGCCGC 60.887 57.895 4.18 0.00 0.00 6.53
849 1033 1.821241 CGTCTTCCATGTATGCGCCG 61.821 60.000 4.18 0.00 0.00 6.46
850 1034 1.498865 CCGTCTTCCATGTATGCGCC 61.499 60.000 4.18 0.00 0.00 6.53
851 1035 1.498865 CCCGTCTTCCATGTATGCGC 61.499 60.000 0.00 0.00 0.00 6.09
852 1036 1.498865 GCCCGTCTTCCATGTATGCG 61.499 60.000 0.00 0.00 0.00 4.73
853 1037 1.166531 GGCCCGTCTTCCATGTATGC 61.167 60.000 0.00 0.00 0.00 3.14
854 1038 0.880278 CGGCCCGTCTTCCATGTATG 60.880 60.000 0.00 0.00 0.00 2.39
855 1039 1.046472 TCGGCCCGTCTTCCATGTAT 61.046 55.000 1.63 0.00 0.00 2.29
870 1054 2.109126 GCCTCATTCACCACTCGGC 61.109 63.158 0.00 0.00 34.57 5.54
878 1062 2.369394 CTTTACCTGGGCCTCATTCAC 58.631 52.381 4.53 0.00 0.00 3.18
899 3597 3.537206 AAGGTGTCGGCCTGTCAGC 62.537 63.158 0.00 8.42 39.17 4.26
913 3611 2.198426 CACCAGTTGGGCCAAGGT 59.802 61.111 21.62 21.37 42.05 3.50
938 3636 0.529992 GCGGATAAGGTTGGACCGAG 60.530 60.000 0.00 0.00 44.90 4.63
956 3654 1.153765 GAGCGGGGAAAATTGCAGC 60.154 57.895 0.00 0.00 0.00 5.25
963 3661 2.204090 AGGGGAGAGCGGGGAAAA 60.204 61.111 0.00 0.00 0.00 2.29
1079 3777 3.400054 CGGTGGGGGAGAGGGAAC 61.400 72.222 0.00 0.00 0.00 3.62
1121 3819 0.676151 GACGGACGTGTAGGGTCTCT 60.676 60.000 0.53 0.00 34.82 3.10
1125 3823 1.975407 CAGGACGGACGTGTAGGGT 60.975 63.158 0.53 0.00 0.00 4.34
1230 3928 2.746375 GGGGTGGGAGATGACGCAT 61.746 63.158 0.00 0.00 35.38 4.73
1269 3967 1.604593 GAGCAATGGCAGGGTGTGT 60.605 57.895 0.00 0.00 44.61 3.72
1453 4151 0.472471 TGACCTTGTTCTGGTGGACC 59.528 55.000 0.00 0.00 38.03 4.46
1475 4175 7.030165 CACTATTCAGTAGTTCAGTACCACTG 58.970 42.308 0.15 0.15 44.71 3.66
1530 4259 7.984391 ACAACGCATCAACATATGAAGAAATA 58.016 30.769 10.38 0.00 42.54 1.40
1540 4269 6.869388 TCAGTTAGTTACAACGCATCAACATA 59.131 34.615 0.00 0.00 33.50 2.29
1542 4271 5.051153 TCAGTTAGTTACAACGCATCAACA 58.949 37.500 0.00 0.00 33.50 3.33
1560 4289 6.415573 CAAGCCTACCTAGGTTAAATCAGTT 58.584 40.000 22.11 0.00 45.42 3.16
1561 4290 5.104485 CCAAGCCTACCTAGGTTAAATCAGT 60.104 44.000 22.11 0.00 45.42 3.41
1562 4291 5.104485 ACCAAGCCTACCTAGGTTAAATCAG 60.104 44.000 22.11 10.03 45.42 2.90
1563 4292 4.786454 ACCAAGCCTACCTAGGTTAAATCA 59.214 41.667 22.11 0.00 45.42 2.57
1727 4463 5.836347 AGGAATTGAGTTGTCTTTTCAAGC 58.164 37.500 0.00 0.00 34.64 4.01
1728 4464 6.698766 CCAAGGAATTGAGTTGTCTTTTCAAG 59.301 38.462 0.00 0.00 34.64 3.02
1729 4465 6.154363 ACCAAGGAATTGAGTTGTCTTTTCAA 59.846 34.615 0.00 0.00 35.52 2.69
1733 4469 7.287696 ACATTACCAAGGAATTGAGTTGTCTTT 59.712 33.333 0.00 0.00 0.00 2.52
1756 4493 8.939929 CACATGAGAAGTTCATAAGTTGTACAT 58.060 33.333 5.50 0.00 44.76 2.29
1757 4494 7.095229 GCACATGAGAAGTTCATAAGTTGTACA 60.095 37.037 5.50 0.00 44.76 2.90
1758 4495 7.237173 GCACATGAGAAGTTCATAAGTTGTAC 58.763 38.462 5.50 0.00 44.76 2.90
1759 4496 6.090763 CGCACATGAGAAGTTCATAAGTTGTA 59.909 38.462 5.50 0.00 44.76 2.41
1760 4497 5.106948 CGCACATGAGAAGTTCATAAGTTGT 60.107 40.000 5.50 0.00 44.76 3.32
1761 4498 5.319139 CGCACATGAGAAGTTCATAAGTTG 58.681 41.667 5.50 0.00 44.76 3.16
1764 4501 3.935203 ACCGCACATGAGAAGTTCATAAG 59.065 43.478 5.50 0.00 44.76 1.73
1765 4502 3.684305 CACCGCACATGAGAAGTTCATAA 59.316 43.478 5.50 0.00 44.76 1.90
1772 4605 2.654749 TCTACACCGCACATGAGAAG 57.345 50.000 0.00 0.00 0.00 2.85
1774 4607 2.099405 TGATCTACACCGCACATGAGA 58.901 47.619 0.00 0.00 0.00 3.27
1782 4615 1.269166 CACGTCTTGATCTACACCGC 58.731 55.000 0.00 0.00 0.00 5.68
1783 4616 1.201647 ACCACGTCTTGATCTACACCG 59.798 52.381 0.00 0.00 0.00 4.94
1799 4632 1.683790 CGCACTTCGGATCGAACCAC 61.684 60.000 12.66 0.00 41.05 4.16
1817 4650 2.112815 GCTCCCGGTTGATTTCCCG 61.113 63.158 0.00 0.00 43.82 5.14
1849 4682 1.723220 GACCGCTCTTAACAGGGAAC 58.277 55.000 0.00 0.00 0.00 3.62
1874 4707 0.391661 CGCCTGCATGGTTCACTAGT 60.392 55.000 0.00 0.00 38.35 2.57
1925 4758 2.752903 TGAATCTTCAGGATCGTCGTCA 59.247 45.455 0.00 0.00 32.76 4.35
1971 4804 5.392767 TCAAGTACTTGAGCAGTAGGAAG 57.607 43.478 30.07 4.50 43.90 3.46
2086 4927 3.741344 ACAACTTGCAAGAGATACGTCAC 59.259 43.478 32.50 0.00 0.00 3.67
2138 5025 5.804639 TGTGCTAACATGTATTCCTGACTT 58.195 37.500 0.00 0.00 0.00 3.01
2185 5072 2.556622 CAACGAAATAAGGGGCAACAGT 59.443 45.455 0.00 0.00 39.74 3.55
2186 5073 2.817258 TCAACGAAATAAGGGGCAACAG 59.183 45.455 0.00 0.00 39.74 3.16
2241 5167 8.673251 AGCTGAGGGGTATATTAAATTCTTCAT 58.327 33.333 0.00 0.00 0.00 2.57
2242 5168 8.045720 AGCTGAGGGGTATATTAAATTCTTCA 57.954 34.615 0.00 0.00 0.00 3.02
2243 5169 8.787852 CAAGCTGAGGGGTATATTAAATTCTTC 58.212 37.037 0.00 0.00 0.00 2.87
2244 5170 8.282256 ACAAGCTGAGGGGTATATTAAATTCTT 58.718 33.333 0.00 0.00 0.00 2.52
2246 5172 9.740710 ATACAAGCTGAGGGGTATATTAAATTC 57.259 33.333 0.00 0.00 0.00 2.17
2249 5175 9.930158 AAAATACAAGCTGAGGGGTATATTAAA 57.070 29.630 0.00 0.00 0.00 1.52
2273 5199 7.424001 TGCATTGATATTGCGATATGAACAAA 58.576 30.769 11.36 0.00 43.10 2.83
2279 5205 4.637091 TCCCTGCATTGATATTGCGATATG 59.363 41.667 11.36 0.75 43.10 1.78
2341 5272 9.927668 GGAATTTGGAATTCTTTCACAATTAGA 57.072 29.630 5.23 0.00 30.75 2.10
2360 5291 3.689224 CGTGAGCAGCAGGAATTTG 57.311 52.632 0.00 0.00 34.35 2.32
2390 5321 4.729918 GCTGAGTGGTGGGGGCAG 62.730 72.222 0.00 0.00 0.00 4.85
2457 5388 7.436118 ACTCAATGATGCACAAACAATTTAGT 58.564 30.769 0.00 0.00 0.00 2.24
2486 5417 9.463443 GATATTGGGCATTTCACTTGTAATTAC 57.537 33.333 8.75 8.75 0.00 1.89
2545 5579 2.700354 AGGGAGAGGGGAGATGAAATC 58.300 52.381 0.00 0.00 46.04 2.17
2558 5593 3.508845 TCAAAAAGGGTGAAGGGAGAG 57.491 47.619 0.00 0.00 0.00 3.20
2667 5702 2.525105 ACAACCACTGTCCAAGGTTT 57.475 45.000 0.00 0.00 42.72 3.27
2686 5721 5.710567 ACTATCAACATCGCTAGCCACTATA 59.289 40.000 9.66 0.00 0.00 1.31
2698 5733 5.051441 CGGAAGAATCACACTATCAACATCG 60.051 44.000 0.00 0.00 0.00 3.84
2816 5851 2.453983 TGCAATTTAAGTGGCAAGGC 57.546 45.000 0.00 0.00 32.54 4.35
2817 5852 4.508861 GCATATGCAATTTAAGTGGCAAGG 59.491 41.667 22.84 0.00 40.02 3.61
2844 5879 5.126061 ACAATGATGAACTAATCCAAGCACC 59.874 40.000 0.00 0.00 0.00 5.01
2848 5896 7.013559 TGGCATACAATGATGAACTAATCCAAG 59.986 37.037 0.00 0.00 0.00 3.61
2865 5913 4.587891 TCACTCATCATGTTGGCATACAA 58.412 39.130 3.98 0.00 36.54 2.41
2876 5924 8.828688 TTCTATCATTAGCTTCACTCATCATG 57.171 34.615 0.00 0.00 0.00 3.07
2877 5925 9.656040 GATTCTATCATTAGCTTCACTCATCAT 57.344 33.333 0.00 0.00 0.00 2.45
2878 5926 8.093307 GGATTCTATCATTAGCTTCACTCATCA 58.907 37.037 0.00 0.00 0.00 3.07
2906 5954 6.435428 CACATAAACACAAAGGGTTACACTC 58.565 40.000 0.00 0.00 0.00 3.51
2984 6035 2.749621 GCACCGTCTCATTTTCCTGAAT 59.250 45.455 0.00 0.00 0.00 2.57
3031 6082 4.818534 AATGCTACATACCGCTTCAATG 57.181 40.909 0.00 0.00 0.00 2.82
3087 6138 3.871006 TCGAATACAAGATCATGTGGTGC 59.129 43.478 13.69 0.69 34.75 5.01
3219 6275 9.581289 TTAAGATGGTCAATTCCTTGTTTTCTA 57.419 29.630 0.00 0.00 33.87 2.10
3295 6351 1.661463 TCCTGCATTCCAGAAGAGGT 58.339 50.000 0.00 0.00 44.64 3.85
3305 6361 8.936864 GGTGTACATATACTTTATCCTGCATTC 58.063 37.037 0.00 0.00 32.00 2.67
3475 6532 0.179275 GCACACGCGTATGCATATCG 60.179 55.000 35.35 21.84 42.97 2.92
3488 6545 0.936600 TCACAATGACACTGCACACG 59.063 50.000 0.00 0.00 0.00 4.49
3491 6548 3.427098 CCATGATCACAATGACACTGCAC 60.427 47.826 0.00 0.00 0.00 4.57
3593 6651 2.126734 GCATGACGCTTGTGTGGC 60.127 61.111 0.00 0.00 37.77 5.01
3636 7131 2.005451 GAGAGCGCAGAATGACACATT 58.995 47.619 11.47 0.00 39.69 2.71
3687 7182 5.494618 CGTATTCTGACTTCTGAGTAGACG 58.505 45.833 0.00 0.00 35.88 4.18
3688 7183 5.163744 TGCGTATTCTGACTTCTGAGTAGAC 60.164 44.000 0.00 0.00 35.88 2.59
3689 7184 4.941873 TGCGTATTCTGACTTCTGAGTAGA 59.058 41.667 0.00 0.00 35.88 2.59
3690 7185 5.236655 TGCGTATTCTGACTTCTGAGTAG 57.763 43.478 0.00 0.00 35.88 2.57
3692 7187 4.081972 ACATGCGTATTCTGACTTCTGAGT 60.082 41.667 0.00 0.00 39.32 3.41
3693 7188 4.428209 ACATGCGTATTCTGACTTCTGAG 58.572 43.478 0.00 0.00 0.00 3.35
3694 7189 4.456280 ACATGCGTATTCTGACTTCTGA 57.544 40.909 0.00 0.00 0.00 3.27
3695 7190 5.319139 CAAACATGCGTATTCTGACTTCTG 58.681 41.667 0.00 0.00 0.00 3.02
3696 7191 4.142816 GCAAACATGCGTATTCTGACTTCT 60.143 41.667 0.00 0.00 0.00 2.85
3697 7192 4.091424 GCAAACATGCGTATTCTGACTTC 58.909 43.478 0.00 0.00 0.00 3.01
3698 7193 3.119849 GGCAAACATGCGTATTCTGACTT 60.120 43.478 0.00 0.00 35.24 3.01
3700 7195 2.161410 TGGCAAACATGCGTATTCTGAC 59.839 45.455 0.00 0.00 35.24 3.51
3710 7215 1.181098 ACCCACTCTGGCAAACATGC 61.181 55.000 0.00 0.00 35.79 4.06
3790 7295 1.815003 GCAAGTCATAAGCTGCACCTT 59.185 47.619 1.02 0.00 0.00 3.50
3815 7320 0.581529 CTAGCACACCAACACACACG 59.418 55.000 0.00 0.00 0.00 4.49
3830 7335 3.077359 ACTTCAACAACAGGCATCTAGC 58.923 45.455 0.00 0.00 44.65 3.42
3918 7447 6.006759 AGTGAGAAAAAGAAACTATGCTGC 57.993 37.500 0.00 0.00 0.00 5.25
3974 7504 7.118535 GGAACTTCTAGAACCAAGAAAGATGAC 59.881 40.741 0.00 0.00 32.77 3.06
3999 7529 5.126067 CCACCAACCTATCATCTAACTTGG 58.874 45.833 0.00 0.00 34.14 3.61
4013 7543 1.456287 GAAGGACTGCCACCAACCT 59.544 57.895 0.00 0.00 36.29 3.50
4098 7639 3.749404 CTGCTACTGTACTCGTGAGTTC 58.251 50.000 7.97 3.74 42.54 3.01
4099 7640 2.095161 GCTGCTACTGTACTCGTGAGTT 60.095 50.000 7.97 0.00 42.54 3.01
4148 7689 9.243105 AGTAAGTACCTTGTAGTAAACCGAATA 57.757 33.333 0.00 0.00 0.00 1.75
4154 7696 9.533253 TGACAAAGTAAGTACCTTGTAGTAAAC 57.467 33.333 5.62 0.00 40.01 2.01
4164 7706 5.864418 TGACAGTGACAAAGTAAGTACCT 57.136 39.130 0.00 0.00 0.00 3.08
4173 7715 5.124776 TGTTACCCTTTTGACAGTGACAAAG 59.875 40.000 17.81 11.07 38.25 2.77
4190 7732 4.640647 GGGAGATTGTTCAATCTGTTACCC 59.359 45.833 26.11 24.08 39.47 3.69
4195 7737 4.703575 CACATGGGAGATTGTTCAATCTGT 59.296 41.667 26.11 17.38 39.47 3.41
4199 7741 4.018141 TCCTCACATGGGAGATTGTTCAAT 60.018 41.667 26.95 0.00 37.05 2.57
4200 7742 3.330405 TCCTCACATGGGAGATTGTTCAA 59.670 43.478 26.95 0.00 37.05 2.69
4208 7751 3.011821 AGAAGTAGTCCTCACATGGGAGA 59.988 47.826 26.95 9.68 37.05 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.