Multiple sequence alignment - TraesCS3B01G035700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G035700 chr3B 100.000 3224 0 0 1 3224 17576138 17579361 0.000000e+00 5954.0
1 TraesCS3B01G035700 chr3A 92.344 2116 96 19 148 2227 24941409 24939324 0.000000e+00 2950.0
2 TraesCS3B01G035700 chr3A 100.000 126 0 0 1 126 523146392 523146517 1.930000e-57 233.0
3 TraesCS3B01G035700 chr3A 100.000 125 0 0 1 125 26458883 26459007 6.960000e-57 231.0
4 TraesCS3B01G035700 chr3D 94.586 1293 48 10 956 2227 12227350 12228641 0.000000e+00 1980.0
5 TraesCS3B01G035700 chr3D 92.378 761 57 1 2465 3224 104790565 104791325 0.000000e+00 1083.0
6 TraesCS3B01G035700 chr3D 91.984 761 60 1 2465 3224 43772712 43773472 0.000000e+00 1066.0
7 TraesCS3B01G035700 chr3D 85.577 104 13 2 390 492 439870517 439870619 1.220000e-19 108.0
8 TraesCS3B01G035700 chr3D 100.000 57 0 0 800 856 12226867 12226923 4.400000e-19 106.0
9 TraesCS3B01G035700 chr5B 95.795 761 30 2 2465 3224 435763985 435764744 0.000000e+00 1227.0
10 TraesCS3B01G035700 chr5B 97.959 49 1 0 2367 2415 546148607 546148655 5.730000e-13 86.1
11 TraesCS3B01G035700 chr5B 94.444 54 1 2 2367 2419 385604140 385604088 7.410000e-12 82.4
12 TraesCS3B01G035700 chr6D 93.824 761 46 1 2465 3224 386904704 386905464 0.000000e+00 1144.0
13 TraesCS3B01G035700 chr6D 86.667 105 12 2 387 491 155146878 155146776 7.310000e-22 115.0
14 TraesCS3B01G035700 chr6D 94.444 54 1 2 2367 2419 107009960 107009908 7.410000e-12 82.4
15 TraesCS3B01G035700 chr6D 94.444 54 1 2 2367 2419 266117266 266117318 7.410000e-12 82.4
16 TraesCS3B01G035700 chr7A 93.167 761 50 2 2465 3224 173734897 173734138 0.000000e+00 1116.0
17 TraesCS3B01G035700 chr7A 99.237 131 1 0 1 131 32040854 32040984 1.500000e-58 237.0
18 TraesCS3B01G035700 chr7A 98.485 132 1 1 1 132 626994631 626994501 6.960000e-57 231.0
19 TraesCS3B01G035700 chr5A 91.327 761 64 2 2465 3224 121256949 121257708 0.000000e+00 1038.0
20 TraesCS3B01G035700 chr5A 99.231 130 0 1 1 130 116776663 116776535 1.930000e-57 233.0
21 TraesCS3B01G035700 chr5A 89.247 93 9 1 397 488 700362824 700362916 7.310000e-22 115.0
22 TraesCS3B01G035700 chr5D 91.196 761 66 1 2465 3224 356890026 356890786 0.000000e+00 1033.0
23 TraesCS3B01G035700 chr4D 90.407 761 72 1 2465 3224 69223531 69222771 0.000000e+00 1000.0
24 TraesCS3B01G035700 chr4D 94.444 54 1 2 2367 2419 25730678 25730626 7.410000e-12 82.4
25 TraesCS3B01G035700 chr4D 94.444 54 1 2 2367 2419 325931584 325931532 7.410000e-12 82.4
26 TraesCS3B01G035700 chr1A 90.407 761 72 1 2465 3224 507715532 507716292 0.000000e+00 1000.0
27 TraesCS3B01G035700 chr4A 97.794 136 3 0 1 136 740469581 740469716 5.380000e-58 235.0
28 TraesCS3B01G035700 chrUn 99.225 129 0 1 1 129 390187880 390187753 6.960000e-57 231.0
29 TraesCS3B01G035700 chr1B 98.473 131 2 0 1 131 602752782 602752652 6.960000e-57 231.0
30 TraesCS3B01G035700 chr1B 88.172 93 11 0 395 487 22433760 22433852 9.450000e-21 111.0
31 TraesCS3B01G035700 chr1B 94.444 54 1 2 2367 2419 617520638 617520586 7.410000e-12 82.4
32 TraesCS3B01G035700 chr2A 97.059 136 2 2 1 135 475565647 475565781 9.000000e-56 228.0
33 TraesCS3B01G035700 chr4B 90.909 88 8 0 401 488 91298400 91298313 5.650000e-23 119.0
34 TraesCS3B01G035700 chr7B 90.805 87 8 0 401 487 41287007 41286921 2.030000e-22 117.0
35 TraesCS3B01G035700 chr6B 89.247 93 9 1 397 488 520230345 520230437 7.310000e-22 115.0
36 TraesCS3B01G035700 chr2B 84.404 109 17 0 389 497 564272113 564272005 1.220000e-19 108.0
37 TraesCS3B01G035700 chr1D 84.685 111 12 5 387 496 301636461 301636355 4.400000e-19 106.0
38 TraesCS3B01G035700 chr1D 94.444 54 1 2 2367 2419 400827046 400827098 7.410000e-12 82.4
39 TraesCS3B01G035700 chr2D 96.154 52 2 0 2367 2418 435326635 435326584 5.730000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G035700 chr3B 17576138 17579361 3223 False 5954 5954 100.000 1 3224 1 chr3B.!!$F1 3223
1 TraesCS3B01G035700 chr3A 24939324 24941409 2085 True 2950 2950 92.344 148 2227 1 chr3A.!!$R1 2079
2 TraesCS3B01G035700 chr3D 104790565 104791325 760 False 1083 1083 92.378 2465 3224 1 chr3D.!!$F2 759
3 TraesCS3B01G035700 chr3D 43772712 43773472 760 False 1066 1066 91.984 2465 3224 1 chr3D.!!$F1 759
4 TraesCS3B01G035700 chr3D 12226867 12228641 1774 False 1043 1980 97.293 800 2227 2 chr3D.!!$F4 1427
5 TraesCS3B01G035700 chr5B 435763985 435764744 759 False 1227 1227 95.795 2465 3224 1 chr5B.!!$F1 759
6 TraesCS3B01G035700 chr6D 386904704 386905464 760 False 1144 1144 93.824 2465 3224 1 chr6D.!!$F2 759
7 TraesCS3B01G035700 chr7A 173734138 173734897 759 True 1116 1116 93.167 2465 3224 1 chr7A.!!$R1 759
8 TraesCS3B01G035700 chr5A 121256949 121257708 759 False 1038 1038 91.327 2465 3224 1 chr5A.!!$F1 759
9 TraesCS3B01G035700 chr5D 356890026 356890786 760 False 1033 1033 91.196 2465 3224 1 chr5D.!!$F1 759
10 TraesCS3B01G035700 chr4D 69222771 69223531 760 True 1000 1000 90.407 2465 3224 1 chr4D.!!$R2 759
11 TraesCS3B01G035700 chr1A 507715532 507716292 760 False 1000 1000 90.407 2465 3224 1 chr1A.!!$F1 759

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.037882 AGGCCGTATGCATCGATCTG 60.038 55.0 16.69 0.0 43.89 2.90 F
86 87 0.038251 GGCCGTATGCATCGATCTGA 60.038 55.0 16.69 0.0 43.89 3.27 F
1938 2311 0.037697 CGATGGGTTTCCTCGACACA 60.038 55.0 0.00 0.0 36.49 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1938 2311 0.676782 GGCCGGTGAAGTTGTAGCAT 60.677 55.000 1.90 0.0 0.00 3.79 R
2177 2550 1.901464 AACCCAACCATGTCCGCAC 60.901 57.895 0.00 0.0 0.00 5.34 R
2993 3366 0.685097 GGGTTGTGCAGAGTACCTGA 59.315 55.000 13.57 0.0 45.78 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.997482 TTTGTTTGTAAGACTTATGTTCTGAAC 57.003 29.630 13.49 13.49 0.00 3.18
44 45 8.149973 TGTTTGTAAGACTTATGTTCTGAACC 57.850 34.615 17.26 1.50 0.00 3.62
45 46 7.990886 TGTTTGTAAGACTTATGTTCTGAACCT 59.009 33.333 17.26 10.47 0.00 3.50
46 47 8.496751 GTTTGTAAGACTTATGTTCTGAACCTC 58.503 37.037 17.26 5.00 0.00 3.85
47 48 7.540474 TGTAAGACTTATGTTCTGAACCTCT 57.460 36.000 17.26 6.93 0.00 3.69
48 49 7.963532 TGTAAGACTTATGTTCTGAACCTCTT 58.036 34.615 17.26 15.14 0.00 2.85
49 50 8.429641 TGTAAGACTTATGTTCTGAACCTCTTT 58.570 33.333 17.26 6.14 0.00 2.52
50 51 9.924650 GTAAGACTTATGTTCTGAACCTCTTTA 57.075 33.333 17.26 0.00 0.00 1.85
55 56 9.793259 ACTTATGTTCTGAACCTCTTTATTTCA 57.207 29.630 17.26 0.00 0.00 2.69
71 72 9.273016 TCTTTATTTCATTAATAAGAGAGGCCG 57.727 33.333 0.00 0.00 39.29 6.13
72 73 8.974060 TTTATTTCATTAATAAGAGAGGCCGT 57.026 30.769 0.00 0.00 39.29 5.68
75 76 7.962964 TTTCATTAATAAGAGAGGCCGTATG 57.037 36.000 0.00 0.00 0.00 2.39
76 77 5.479306 TCATTAATAAGAGAGGCCGTATGC 58.521 41.667 0.00 0.00 40.16 3.14
77 78 4.948341 TTAATAAGAGAGGCCGTATGCA 57.052 40.909 0.00 0.00 43.89 3.96
78 79 5.483685 TTAATAAGAGAGGCCGTATGCAT 57.516 39.130 3.79 3.79 43.89 3.96
82 83 4.996976 GAGGCCGTATGCATCGAT 57.003 55.556 16.69 0.00 41.45 3.59
83 84 2.743195 GAGGCCGTATGCATCGATC 58.257 57.895 16.69 9.76 41.45 3.69
84 85 0.244994 GAGGCCGTATGCATCGATCT 59.755 55.000 16.69 13.27 41.45 2.75
85 86 0.037882 AGGCCGTATGCATCGATCTG 60.038 55.000 16.69 0.00 43.89 2.90
86 87 0.038251 GGCCGTATGCATCGATCTGA 60.038 55.000 16.69 0.00 43.89 3.27
87 88 1.404717 GGCCGTATGCATCGATCTGAT 60.405 52.381 16.69 0.00 43.89 2.90
95 96 3.910817 ATCGATCTGATGCAGAGGC 57.089 52.632 0.00 0.00 44.08 4.70
96 97 0.321021 ATCGATCTGATGCAGAGGCC 59.679 55.000 0.00 0.00 44.08 5.19
97 98 1.664017 CGATCTGATGCAGAGGCCG 60.664 63.158 0.00 3.49 44.08 6.13
98 99 1.301558 GATCTGATGCAGAGGCCGG 60.302 63.158 0.00 0.00 44.08 6.13
99 100 2.728443 GATCTGATGCAGAGGCCGGG 62.728 65.000 2.18 0.00 44.08 5.73
100 101 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
102 103 3.161450 GATGCAGAGGCCGGGGTA 61.161 66.667 2.18 0.00 40.13 3.69
103 104 2.690881 ATGCAGAGGCCGGGGTAA 60.691 61.111 2.18 0.00 40.13 2.85
104 105 2.265467 GATGCAGAGGCCGGGGTAAA 62.265 60.000 2.18 0.00 40.13 2.01
105 106 2.437895 GCAGAGGCCGGGGTAAAC 60.438 66.667 2.18 0.00 0.00 2.01
106 107 2.271173 CAGAGGCCGGGGTAAACC 59.729 66.667 2.18 0.00 39.11 3.27
120 121 4.774660 GGTAAACCCCCTTTTCCAAAAA 57.225 40.909 0.00 0.00 31.15 1.94
158 159 2.543031 GCAGCAGCATCACCATGTTATG 60.543 50.000 0.00 0.00 41.58 1.90
192 193 1.019673 CCTTCTCGGCATCCATTGTG 58.980 55.000 0.00 0.00 0.00 3.33
198 199 1.105167 CGGCATCCATTGTGGCATCT 61.105 55.000 0.00 0.00 41.75 2.90
219 222 3.357166 TTTTGCCACGTCAACCATTAC 57.643 42.857 0.00 0.00 0.00 1.89
220 223 0.869068 TTGCCACGTCAACCATTACG 59.131 50.000 0.00 0.00 44.47 3.18
246 249 5.650543 ACTCAACTTGGCTAGTTTTTGTTG 58.349 37.500 11.64 1.04 44.73 3.33
249 252 4.307443 ACTTGGCTAGTTTTTGTTGCTC 57.693 40.909 0.00 0.00 31.29 4.26
263 266 3.023832 TGTTGCTCGATCACCTATCTCA 58.976 45.455 0.00 0.00 31.87 3.27
318 331 2.095059 GCTCATATTGCCGCATTAAGGG 60.095 50.000 0.00 0.00 0.00 3.95
327 340 3.129638 TGCCGCATTAAGGGAATACAAAC 59.870 43.478 0.00 0.00 0.00 2.93
331 344 5.204833 CGCATTAAGGGAATACAAACATCG 58.795 41.667 0.00 0.00 0.00 3.84
339 352 6.049149 AGGGAATACAAACATCGTGAGTATG 58.951 40.000 0.00 0.00 0.00 2.39
352 365 0.248907 GAGTATGCACGCCGCTTCTA 60.249 55.000 0.00 0.00 43.06 2.10
353 366 0.527817 AGTATGCACGCCGCTTCTAC 60.528 55.000 0.00 0.00 43.06 2.59
355 368 0.108567 TATGCACGCCGCTTCTACAA 60.109 50.000 0.00 0.00 43.06 2.41
365 378 4.321008 CGCCGCTTCTACAAGATTAGGATA 60.321 45.833 0.00 0.00 0.00 2.59
366 379 4.924462 GCCGCTTCTACAAGATTAGGATAC 59.076 45.833 0.00 0.00 0.00 2.24
367 380 5.509163 GCCGCTTCTACAAGATTAGGATACA 60.509 44.000 0.00 0.00 41.41 2.29
379 392 7.849804 AGATTAGGATACACACAATCAACAC 57.150 36.000 0.00 0.00 41.41 3.32
380 393 6.823689 AGATTAGGATACACACAATCAACACC 59.176 38.462 0.00 0.00 41.41 4.16
382 395 4.922206 AGGATACACACAATCAACACCAT 58.078 39.130 0.00 0.00 41.41 3.55
409 422 7.176515 TGCACACACATAAAATGATACTTCCTT 59.823 33.333 0.00 0.00 0.00 3.36
411 424 7.904977 CACACACATAAAATGATACTTCCTTCG 59.095 37.037 0.00 0.00 0.00 3.79
413 426 8.450964 CACACATAAAATGATACTTCCTTCGTT 58.549 33.333 0.00 0.00 0.00 3.85
415 428 9.490663 CACATAAAATGATACTTCCTTCGTTTC 57.509 33.333 0.00 0.00 31.56 2.78
428 441 7.865889 ACTTCCTTCGTTTCAAAATAAATGTCC 59.134 33.333 0.00 0.00 0.00 4.02
436 449 8.061268 CGTTTCAAAATAAATGTCCCAACTTTG 58.939 33.333 0.00 0.00 0.00 2.77
439 452 9.535878 TTCAAAATAAATGTCCCAACTTTGTAC 57.464 29.630 0.00 0.00 0.00 2.90
440 453 8.919145 TCAAAATAAATGTCCCAACTTTGTACT 58.081 29.630 0.00 0.00 0.00 2.73
444 457 9.582648 AATAAATGTCCCAACTTTGTACTAACT 57.417 29.630 0.00 0.00 0.00 2.24
445 458 7.891498 AAATGTCCCAACTTTGTACTAACTT 57.109 32.000 0.00 0.00 0.00 2.66
446 459 7.891498 AATGTCCCAACTTTGTACTAACTTT 57.109 32.000 0.00 0.00 0.00 2.66
447 460 8.983702 AATGTCCCAACTTTGTACTAACTTTA 57.016 30.769 0.00 0.00 0.00 1.85
448 461 8.617290 ATGTCCCAACTTTGTACTAACTTTAG 57.383 34.615 0.00 0.00 36.82 1.85
449 462 7.567458 TGTCCCAACTTTGTACTAACTTTAGT 58.433 34.615 6.85 6.85 45.39 2.24
450 463 8.703743 TGTCCCAACTTTGTACTAACTTTAGTA 58.296 33.333 4.98 4.98 43.36 1.82
473 486 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
476 489 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
478 491 4.610605 TGAGACACTTATTTTGGGACGA 57.389 40.909 0.00 0.00 0.00 4.20
488 501 3.343941 TTTTGGGACGAAGGGAGTATG 57.656 47.619 0.00 0.00 0.00 2.39
493 506 3.228453 GGGACGAAGGGAGTATGTGATA 58.772 50.000 0.00 0.00 0.00 2.15
536 552 8.415950 AACACCCATTGAAATGAACTACATTA 57.584 30.769 4.58 0.00 46.90 1.90
537 553 8.593945 ACACCCATTGAAATGAACTACATTAT 57.406 30.769 4.58 0.00 46.90 1.28
549 568 7.786178 TGAACTACATTATACATCAGCAACC 57.214 36.000 0.00 0.00 0.00 3.77
649 668 0.250727 CGAACCTTCTCCTTTGGGCA 60.251 55.000 0.00 0.00 0.00 5.36
657 676 0.107017 CTCCTTTGGGCATCCATCGT 60.107 55.000 0.00 0.00 43.63 3.73
734 753 2.663602 CGACAACTCCAAGAATGACGAG 59.336 50.000 0.00 0.00 33.91 4.18
766 785 6.754193 TGGTGTTGATATTTCTTTTTGGACC 58.246 36.000 0.00 0.00 0.00 4.46
787 806 1.344114 GGAGAGTTGCCATTTGCCAAA 59.656 47.619 0.00 0.00 40.16 3.28
788 807 2.027837 GGAGAGTTGCCATTTGCCAAAT 60.028 45.455 0.00 0.00 40.16 2.32
789 808 2.997986 GAGAGTTGCCATTTGCCAAATG 59.002 45.455 20.73 20.73 46.09 2.32
790 809 1.465777 GAGTTGCCATTTGCCAAATGC 59.534 47.619 21.96 17.45 45.36 3.56
856 875 4.382470 CCCGATCATCATCTTCTCCATACC 60.382 50.000 0.00 0.00 0.00 2.73
857 876 4.221482 CCGATCATCATCTTCTCCATACCA 59.779 45.833 0.00 0.00 0.00 3.25
858 877 5.105023 CCGATCATCATCTTCTCCATACCAT 60.105 44.000 0.00 0.00 0.00 3.55
859 878 6.097412 CCGATCATCATCTTCTCCATACCATA 59.903 42.308 0.00 0.00 0.00 2.74
860 879 7.201983 CCGATCATCATCTTCTCCATACCATAT 60.202 40.741 0.00 0.00 0.00 1.78
861 880 7.652507 CGATCATCATCTTCTCCATACCATATG 59.347 40.741 0.00 0.00 0.00 1.78
862 881 6.647229 TCATCATCTTCTCCATACCATATGC 58.353 40.000 0.00 0.00 0.00 3.14
863 882 6.214005 TCATCATCTTCTCCATACCATATGCA 59.786 38.462 0.00 0.00 0.00 3.96
864 883 6.631763 TCATCTTCTCCATACCATATGCAT 57.368 37.500 3.79 3.79 0.00 3.96
865 884 6.412214 TCATCTTCTCCATACCATATGCATG 58.588 40.000 10.16 3.09 0.00 4.06
925 1080 5.069914 ACCACCGCACTCTACAATATAATGA 59.930 40.000 0.00 0.00 0.00 2.57
972 1327 6.114187 TATATGTATATATGGGCAGCAGCC 57.886 41.667 12.53 12.53 43.49 4.85
1011 1366 2.172293 GACTCCAGCCATGATTTCCTCT 59.828 50.000 0.00 0.00 0.00 3.69
1040 1413 1.003003 GCTGCTTCTTCTTCTCCTGGT 59.997 52.381 0.00 0.00 0.00 4.00
1041 1414 2.551938 GCTGCTTCTTCTTCTCCTGGTT 60.552 50.000 0.00 0.00 0.00 3.67
1075 1448 4.394078 TCGAGTTCGACGCCGGTG 62.394 66.667 14.93 14.93 44.22 4.94
1081 1454 3.442512 TTCGACGCCGGTGTTTCCA 62.443 57.895 23.85 4.07 36.24 3.53
1082 1455 3.708734 CGACGCCGGTGTTTCCAC 61.709 66.667 23.85 7.97 41.06 4.02
1145 1518 2.660064 CCAACTCCCTCCCCGTCAG 61.660 68.421 0.00 0.00 0.00 3.51
1531 1904 3.665675 GAGATGGGCGGCAGAACGT 62.666 63.158 12.47 0.00 35.98 3.99
1638 2011 2.283604 TCCTACTGCCTGCCGACA 60.284 61.111 0.00 0.00 0.00 4.35
1938 2311 0.037697 CGATGGGTTTCCTCGACACA 60.038 55.000 0.00 0.00 36.49 3.72
2177 2550 0.727122 GAGGTGGTGTACGACGTTCG 60.727 60.000 5.50 0.00 46.93 3.95
2196 2569 1.900981 TGCGGACATGGTTGGGTTG 60.901 57.895 0.00 0.00 0.00 3.77
2216 2589 4.944372 CCCGGACCGCTGCGTATC 62.944 72.222 21.59 16.97 0.00 2.24
2219 2592 2.302952 CGGACCGCTGCGTATCATG 61.303 63.158 21.59 6.74 0.00 3.07
2227 2600 2.218759 CGCTGCGTATCATGGTAGTTTC 59.781 50.000 14.93 0.00 0.00 2.78
2228 2601 2.218759 GCTGCGTATCATGGTAGTTTCG 59.781 50.000 0.00 0.00 0.00 3.46
2229 2602 2.794910 CTGCGTATCATGGTAGTTTCGG 59.205 50.000 0.00 0.00 0.00 4.30
2230 2603 2.166870 TGCGTATCATGGTAGTTTCGGT 59.833 45.455 0.00 0.00 0.00 4.69
2231 2604 2.538449 GCGTATCATGGTAGTTTCGGTG 59.462 50.000 0.00 0.00 0.00 4.94
2232 2605 2.538449 CGTATCATGGTAGTTTCGGTGC 59.462 50.000 0.00 0.00 0.00 5.01
2233 2606 3.737047 CGTATCATGGTAGTTTCGGTGCT 60.737 47.826 0.00 0.00 0.00 4.40
2234 2607 4.498513 CGTATCATGGTAGTTTCGGTGCTA 60.499 45.833 0.00 0.00 0.00 3.49
2235 2608 3.965379 TCATGGTAGTTTCGGTGCTAA 57.035 42.857 0.00 0.00 0.00 3.09
2236 2609 4.274602 TCATGGTAGTTTCGGTGCTAAA 57.725 40.909 0.00 0.00 0.00 1.85
2237 2610 4.250464 TCATGGTAGTTTCGGTGCTAAAG 58.750 43.478 0.00 0.00 0.00 1.85
2238 2611 4.020928 TCATGGTAGTTTCGGTGCTAAAGA 60.021 41.667 0.00 0.00 0.00 2.52
2239 2612 3.656559 TGGTAGTTTCGGTGCTAAAGAC 58.343 45.455 0.00 0.00 0.00 3.01
2240 2613 3.322828 TGGTAGTTTCGGTGCTAAAGACT 59.677 43.478 0.00 0.00 0.00 3.24
2241 2614 3.678548 GGTAGTTTCGGTGCTAAAGACTG 59.321 47.826 0.00 0.00 0.00 3.51
2242 2615 2.143925 AGTTTCGGTGCTAAAGACTGC 58.856 47.619 0.00 0.00 0.00 4.40
2243 2616 1.136336 GTTTCGGTGCTAAAGACTGCG 60.136 52.381 0.00 0.00 0.00 5.18
2244 2617 0.032952 TTCGGTGCTAAAGACTGCGT 59.967 50.000 0.00 0.00 0.00 5.24
2245 2618 0.032952 TCGGTGCTAAAGACTGCGTT 59.967 50.000 0.00 0.00 0.00 4.84
2246 2619 0.865769 CGGTGCTAAAGACTGCGTTT 59.134 50.000 0.00 0.00 0.00 3.60
2247 2620 2.063266 CGGTGCTAAAGACTGCGTTTA 58.937 47.619 0.00 0.00 0.00 2.01
2248 2621 2.159881 CGGTGCTAAAGACTGCGTTTAC 60.160 50.000 0.00 0.00 0.00 2.01
2249 2622 3.064931 GGTGCTAAAGACTGCGTTTACT 58.935 45.455 0.00 0.00 0.00 2.24
2250 2623 3.497262 GGTGCTAAAGACTGCGTTTACTT 59.503 43.478 0.00 0.00 0.00 2.24
2251 2624 4.455124 GTGCTAAAGACTGCGTTTACTTG 58.545 43.478 0.00 0.00 0.00 3.16
2252 2625 3.059188 TGCTAAAGACTGCGTTTACTTGC 60.059 43.478 0.00 0.00 0.00 4.01
2253 2626 2.663279 AAAGACTGCGTTTACTTGCG 57.337 45.000 0.00 0.00 0.00 4.85
2254 2627 1.578583 AAGACTGCGTTTACTTGCGT 58.421 45.000 0.00 0.00 0.00 5.24
2255 2628 0.859232 AGACTGCGTTTACTTGCGTG 59.141 50.000 0.00 0.00 0.00 5.34
2256 2629 0.721483 GACTGCGTTTACTTGCGTGC 60.721 55.000 0.00 0.00 0.00 5.34
2257 2630 1.278337 CTGCGTTTACTTGCGTGCA 59.722 52.632 0.00 0.00 0.00 4.57
2258 2631 0.110238 CTGCGTTTACTTGCGTGCAT 60.110 50.000 0.00 0.00 0.00 3.96
2259 2632 0.385348 TGCGTTTACTTGCGTGCATG 60.385 50.000 0.09 0.09 0.00 4.06
2260 2633 0.385473 GCGTTTACTTGCGTGCATGT 60.385 50.000 16.18 16.18 37.87 3.21
2261 2634 1.591248 CGTTTACTTGCGTGCATGTC 58.409 50.000 15.51 0.53 36.11 3.06
2262 2635 1.194547 CGTTTACTTGCGTGCATGTCT 59.805 47.619 15.51 0.00 36.11 3.41
2263 2636 2.349438 CGTTTACTTGCGTGCATGTCTT 60.349 45.455 15.51 0.00 36.11 3.01
2264 2637 3.120820 CGTTTACTTGCGTGCATGTCTTA 60.121 43.478 15.51 2.38 36.11 2.10
2265 2638 4.435518 CGTTTACTTGCGTGCATGTCTTAT 60.436 41.667 15.51 0.00 36.11 1.73
2266 2639 5.390613 GTTTACTTGCGTGCATGTCTTATT 58.609 37.500 15.51 0.00 36.11 1.40
2267 2640 6.539324 GTTTACTTGCGTGCATGTCTTATTA 58.461 36.000 15.51 0.00 36.11 0.98
2268 2641 6.729391 TTACTTGCGTGCATGTCTTATTAA 57.271 33.333 15.51 2.77 36.11 1.40
2269 2642 5.818136 ACTTGCGTGCATGTCTTATTAAT 57.182 34.783 7.93 0.00 29.96 1.40
2270 2643 6.194796 ACTTGCGTGCATGTCTTATTAATT 57.805 33.333 7.93 0.00 29.96 1.40
2271 2644 7.315247 ACTTGCGTGCATGTCTTATTAATTA 57.685 32.000 7.93 0.00 29.96 1.40
2272 2645 7.186804 ACTTGCGTGCATGTCTTATTAATTAC 58.813 34.615 7.93 0.00 29.96 1.89
2273 2646 6.918892 TGCGTGCATGTCTTATTAATTACT 57.081 33.333 7.93 0.00 0.00 2.24
2274 2647 6.943981 TGCGTGCATGTCTTATTAATTACTC 58.056 36.000 7.93 0.00 0.00 2.59
2275 2648 6.018262 TGCGTGCATGTCTTATTAATTACTCC 60.018 38.462 7.93 0.00 0.00 3.85
2276 2649 6.202954 GCGTGCATGTCTTATTAATTACTCCT 59.797 38.462 7.93 0.00 0.00 3.69
2277 2650 7.567571 CGTGCATGTCTTATTAATTACTCCTG 58.432 38.462 0.00 0.00 0.00 3.86
2278 2651 7.224753 CGTGCATGTCTTATTAATTACTCCTGT 59.775 37.037 0.00 0.00 0.00 4.00
2279 2652 8.893727 GTGCATGTCTTATTAATTACTCCTGTT 58.106 33.333 0.00 0.00 0.00 3.16
2280 2653 9.461312 TGCATGTCTTATTAATTACTCCTGTTT 57.539 29.630 0.00 0.00 0.00 2.83
2288 2661 9.895138 TTATTAATTACTCCTGTTTACTCCACC 57.105 33.333 0.00 0.00 0.00 4.61
2289 2662 7.563724 TTAATTACTCCTGTTTACTCCACCT 57.436 36.000 0.00 0.00 0.00 4.00
2290 2663 5.678955 ATTACTCCTGTTTACTCCACCTC 57.321 43.478 0.00 0.00 0.00 3.85
2291 2664 2.972348 ACTCCTGTTTACTCCACCTCA 58.028 47.619 0.00 0.00 0.00 3.86
2292 2665 2.633481 ACTCCTGTTTACTCCACCTCAC 59.367 50.000 0.00 0.00 0.00 3.51
2293 2666 2.900546 CTCCTGTTTACTCCACCTCACT 59.099 50.000 0.00 0.00 0.00 3.41
2294 2667 2.897969 TCCTGTTTACTCCACCTCACTC 59.102 50.000 0.00 0.00 0.00 3.51
2295 2668 2.900546 CCTGTTTACTCCACCTCACTCT 59.099 50.000 0.00 0.00 0.00 3.24
2296 2669 3.325135 CCTGTTTACTCCACCTCACTCTT 59.675 47.826 0.00 0.00 0.00 2.85
2297 2670 4.561105 CTGTTTACTCCACCTCACTCTTC 58.439 47.826 0.00 0.00 0.00 2.87
2298 2671 4.223953 TGTTTACTCCACCTCACTCTTCT 58.776 43.478 0.00 0.00 0.00 2.85
2299 2672 4.654262 TGTTTACTCCACCTCACTCTTCTT 59.346 41.667 0.00 0.00 0.00 2.52
2300 2673 5.221461 TGTTTACTCCACCTCACTCTTCTTC 60.221 44.000 0.00 0.00 0.00 2.87
2301 2674 2.964209 ACTCCACCTCACTCTTCTTCA 58.036 47.619 0.00 0.00 0.00 3.02
2302 2675 3.515562 ACTCCACCTCACTCTTCTTCAT 58.484 45.455 0.00 0.00 0.00 2.57
2303 2676 3.513515 ACTCCACCTCACTCTTCTTCATC 59.486 47.826 0.00 0.00 0.00 2.92
2304 2677 3.510459 TCCACCTCACTCTTCTTCATCA 58.490 45.455 0.00 0.00 0.00 3.07
2305 2678 3.513119 TCCACCTCACTCTTCTTCATCAG 59.487 47.826 0.00 0.00 0.00 2.90
2306 2679 3.513119 CCACCTCACTCTTCTTCATCAGA 59.487 47.826 0.00 0.00 0.00 3.27
2307 2680 4.161942 CCACCTCACTCTTCTTCATCAGAT 59.838 45.833 0.00 0.00 0.00 2.90
2308 2681 5.338219 CCACCTCACTCTTCTTCATCAGATT 60.338 44.000 0.00 0.00 0.00 2.40
2309 2682 5.581479 CACCTCACTCTTCTTCATCAGATTG 59.419 44.000 0.00 0.00 0.00 2.67
2310 2683 5.117584 CCTCACTCTTCTTCATCAGATTGG 58.882 45.833 0.00 0.00 0.00 3.16
2311 2684 4.511527 TCACTCTTCTTCATCAGATTGGC 58.488 43.478 0.00 0.00 0.00 4.52
2312 2685 4.224594 TCACTCTTCTTCATCAGATTGGCT 59.775 41.667 0.00 0.00 0.00 4.75
2313 2686 4.942483 CACTCTTCTTCATCAGATTGGCTT 59.058 41.667 0.00 0.00 0.00 4.35
2314 2687 5.064962 CACTCTTCTTCATCAGATTGGCTTC 59.935 44.000 0.00 0.00 0.00 3.86
2315 2688 4.521146 TCTTCTTCATCAGATTGGCTTCC 58.479 43.478 0.00 0.00 0.00 3.46
2316 2689 4.019051 TCTTCTTCATCAGATTGGCTTCCA 60.019 41.667 0.00 0.00 0.00 3.53
2317 2690 3.882444 TCTTCATCAGATTGGCTTCCAG 58.118 45.455 0.00 0.00 33.81 3.86
2318 2691 2.723322 TCATCAGATTGGCTTCCAGG 57.277 50.000 0.00 0.00 33.81 4.45
2319 2692 1.030457 CATCAGATTGGCTTCCAGGC 58.970 55.000 0.00 0.00 41.77 4.85
2320 2693 0.465097 ATCAGATTGGCTTCCAGGCG 60.465 55.000 0.00 0.00 44.78 5.52
2321 2694 1.078214 CAGATTGGCTTCCAGGCGA 60.078 57.895 0.00 0.00 44.78 5.54
2322 2695 0.677731 CAGATTGGCTTCCAGGCGAA 60.678 55.000 0.00 0.00 44.78 4.70
2323 2696 0.038166 AGATTGGCTTCCAGGCGAAA 59.962 50.000 0.00 0.00 44.78 3.46
2324 2697 1.106285 GATTGGCTTCCAGGCGAAAT 58.894 50.000 0.00 0.00 44.78 2.17
2325 2698 0.819582 ATTGGCTTCCAGGCGAAATG 59.180 50.000 0.00 0.00 44.78 2.32
2326 2699 0.251121 TTGGCTTCCAGGCGAAATGA 60.251 50.000 0.00 0.00 44.78 2.57
2327 2700 0.677731 TGGCTTCCAGGCGAAATGAG 60.678 55.000 0.00 0.00 44.78 2.90
2328 2701 0.392998 GGCTTCCAGGCGAAATGAGA 60.393 55.000 0.00 0.00 0.00 3.27
2329 2702 1.453155 GCTTCCAGGCGAAATGAGAA 58.547 50.000 0.00 0.00 0.00 2.87
2330 2703 1.812571 GCTTCCAGGCGAAATGAGAAA 59.187 47.619 0.00 0.00 0.00 2.52
2331 2704 2.414691 GCTTCCAGGCGAAATGAGAAAC 60.415 50.000 0.00 0.00 0.00 2.78
2332 2705 2.859165 TCCAGGCGAAATGAGAAACT 57.141 45.000 0.00 0.00 0.00 2.66
2333 2706 3.973206 TCCAGGCGAAATGAGAAACTA 57.027 42.857 0.00 0.00 0.00 2.24
2334 2707 3.861840 TCCAGGCGAAATGAGAAACTAG 58.138 45.455 0.00 0.00 0.00 2.57
2335 2708 2.352960 CCAGGCGAAATGAGAAACTAGC 59.647 50.000 0.00 0.00 0.00 3.42
2336 2709 2.029728 CAGGCGAAATGAGAAACTAGCG 59.970 50.000 0.00 0.00 0.00 4.26
2337 2710 2.000447 GGCGAAATGAGAAACTAGCGT 59.000 47.619 0.00 0.00 0.00 5.07
2338 2711 2.029365 GGCGAAATGAGAAACTAGCGTC 59.971 50.000 0.00 0.00 0.00 5.19
2339 2712 2.284514 GCGAAATGAGAAACTAGCGTCG 60.285 50.000 0.00 0.00 0.00 5.12
2340 2713 2.279136 CGAAATGAGAAACTAGCGTCGG 59.721 50.000 0.00 0.00 0.00 4.79
2341 2714 3.508762 GAAATGAGAAACTAGCGTCGGA 58.491 45.455 0.00 0.00 0.00 4.55
2342 2715 3.802948 AATGAGAAACTAGCGTCGGAT 57.197 42.857 0.00 0.00 0.00 4.18
2343 2716 2.846039 TGAGAAACTAGCGTCGGATC 57.154 50.000 0.00 0.00 0.00 3.36
2344 2717 1.404391 TGAGAAACTAGCGTCGGATCC 59.596 52.381 0.00 0.00 0.00 3.36
2345 2718 1.404391 GAGAAACTAGCGTCGGATCCA 59.596 52.381 13.41 0.00 0.00 3.41
2346 2719 2.032620 AGAAACTAGCGTCGGATCCAT 58.967 47.619 13.41 0.00 0.00 3.41
2347 2720 2.034812 AGAAACTAGCGTCGGATCCATC 59.965 50.000 13.41 2.72 0.00 3.51
2348 2721 0.674534 AACTAGCGTCGGATCCATCC 59.325 55.000 13.41 0.00 43.65 3.51
2357 2730 3.989104 GGATCCATCCACGATTCGT 57.011 52.632 6.95 5.75 46.38 3.85
2388 2761 2.801077 TTTCGAAAAGGGGGAGATCC 57.199 50.000 8.44 0.00 0.00 3.36
2398 2771 3.863606 GGAGATCCCCGACCTCTG 58.136 66.667 0.00 0.00 0.00 3.35
2399 2772 2.503382 GGAGATCCCCGACCTCTGC 61.503 68.421 0.00 0.00 0.00 4.26
2400 2773 1.758514 GAGATCCCCGACCTCTGCA 60.759 63.158 0.00 0.00 0.00 4.41
2401 2774 1.074926 AGATCCCCGACCTCTGCAT 60.075 57.895 0.00 0.00 0.00 3.96
2402 2775 1.118356 AGATCCCCGACCTCTGCATC 61.118 60.000 0.00 0.00 0.00 3.91
2403 2776 1.383109 ATCCCCGACCTCTGCATCA 60.383 57.895 0.00 0.00 0.00 3.07
2404 2777 1.406065 ATCCCCGACCTCTGCATCAG 61.406 60.000 0.00 0.00 0.00 2.90
2405 2778 2.060383 CCCCGACCTCTGCATCAGA 61.060 63.158 0.00 0.00 38.25 3.27
2406 2779 1.617018 CCCCGACCTCTGCATCAGAA 61.617 60.000 0.00 0.00 40.18 3.02
2407 2780 0.460987 CCCGACCTCTGCATCAGAAC 60.461 60.000 0.00 0.00 40.18 3.01
2408 2781 0.803768 CCGACCTCTGCATCAGAACG 60.804 60.000 0.00 4.89 40.18 3.95
2409 2782 0.171231 CGACCTCTGCATCAGAACGA 59.829 55.000 0.00 0.00 40.18 3.85
2410 2783 1.202348 CGACCTCTGCATCAGAACGAT 60.202 52.381 0.00 0.00 40.18 3.73
2418 2791 0.863799 CATCAGAACGATGCATCCGG 59.136 55.000 20.87 10.39 44.95 5.14
2419 2792 0.752658 ATCAGAACGATGCATCCGGA 59.247 50.000 20.87 6.61 31.20 5.14
2420 2793 0.103026 TCAGAACGATGCATCCGGAG 59.897 55.000 20.87 9.30 0.00 4.63
2421 2794 0.103026 CAGAACGATGCATCCGGAGA 59.897 55.000 20.87 0.00 0.00 3.71
2422 2795 0.387202 AGAACGATGCATCCGGAGAG 59.613 55.000 20.87 6.28 0.00 3.20
2423 2796 1.218230 GAACGATGCATCCGGAGAGC 61.218 60.000 20.87 21.28 0.00 4.09
2424 2797 2.356793 CGATGCATCCGGAGAGCC 60.357 66.667 24.03 11.94 0.00 4.70
2425 2798 2.824546 GATGCATCCGGAGAGCCA 59.175 61.111 24.03 14.77 0.00 4.75
2426 2799 1.374190 GATGCATCCGGAGAGCCAT 59.626 57.895 24.03 17.92 0.00 4.40
2427 2800 0.673022 GATGCATCCGGAGAGCCATC 60.673 60.000 24.03 20.94 0.00 3.51
2428 2801 1.126329 ATGCATCCGGAGAGCCATCT 61.126 55.000 24.03 7.88 38.98 2.90
2429 2802 0.469892 TGCATCCGGAGAGCCATCTA 60.470 55.000 24.03 6.84 35.30 1.98
2430 2803 0.037790 GCATCCGGAGAGCCATCTAC 60.038 60.000 18.30 0.00 35.30 2.59
2431 2804 0.605589 CATCCGGAGAGCCATCTACC 59.394 60.000 11.34 0.00 35.30 3.18
2432 2805 0.485099 ATCCGGAGAGCCATCTACCT 59.515 55.000 11.34 0.00 35.30 3.08
2433 2806 0.178987 TCCGGAGAGCCATCTACCTC 60.179 60.000 0.00 0.00 35.30 3.85
2434 2807 0.178975 CCGGAGAGCCATCTACCTCT 60.179 60.000 0.00 0.00 40.93 3.69
2435 2808 1.074084 CCGGAGAGCCATCTACCTCTA 59.926 57.143 0.00 0.00 38.48 2.43
2436 2809 2.156098 CGGAGAGCCATCTACCTCTAC 58.844 57.143 0.00 0.00 38.48 2.59
2437 2810 2.487445 CGGAGAGCCATCTACCTCTACA 60.487 54.545 0.00 0.00 38.67 2.74
2438 2811 3.567397 GGAGAGCCATCTACCTCTACAA 58.433 50.000 0.00 0.00 38.62 2.41
2439 2812 3.961408 GGAGAGCCATCTACCTCTACAAA 59.039 47.826 0.00 0.00 38.62 2.83
2440 2813 4.038642 GGAGAGCCATCTACCTCTACAAAG 59.961 50.000 0.00 0.00 38.62 2.77
2441 2814 4.615513 AGAGCCATCTACCTCTACAAAGT 58.384 43.478 0.00 0.00 36.70 2.66
2442 2815 4.647399 AGAGCCATCTACCTCTACAAAGTC 59.353 45.833 0.00 0.00 36.70 3.01
2443 2816 4.615513 AGCCATCTACCTCTACAAAGTCT 58.384 43.478 0.00 0.00 0.00 3.24
2444 2817 5.767670 AGCCATCTACCTCTACAAAGTCTA 58.232 41.667 0.00 0.00 0.00 2.59
2445 2818 5.830991 AGCCATCTACCTCTACAAAGTCTAG 59.169 44.000 0.00 0.00 0.00 2.43
2446 2819 5.010213 GCCATCTACCTCTACAAAGTCTAGG 59.990 48.000 0.00 0.00 0.00 3.02
2447 2820 5.536916 CCATCTACCTCTACAAAGTCTAGGG 59.463 48.000 0.00 0.00 0.00 3.53
2448 2821 6.366340 CATCTACCTCTACAAAGTCTAGGGA 58.634 44.000 0.00 0.00 0.00 4.20
2449 2822 6.398655 TCTACCTCTACAAAGTCTAGGGAA 57.601 41.667 0.00 0.00 0.00 3.97
2450 2823 6.424883 TCTACCTCTACAAAGTCTAGGGAAG 58.575 44.000 0.00 0.00 0.00 3.46
2451 2824 4.354662 ACCTCTACAAAGTCTAGGGAAGG 58.645 47.826 0.00 0.00 0.00 3.46
2452 2825 4.045590 ACCTCTACAAAGTCTAGGGAAGGA 59.954 45.833 0.00 0.00 0.00 3.36
2453 2826 5.024118 CCTCTACAAAGTCTAGGGAAGGAA 58.976 45.833 0.00 0.00 0.00 3.36
2454 2827 5.128008 CCTCTACAAAGTCTAGGGAAGGAAG 59.872 48.000 0.00 0.00 0.00 3.46
2455 2828 3.704800 ACAAAGTCTAGGGAAGGAAGC 57.295 47.619 0.00 0.00 0.00 3.86
2456 2829 2.979678 ACAAAGTCTAGGGAAGGAAGCA 59.020 45.455 0.00 0.00 0.00 3.91
2457 2830 3.008485 ACAAAGTCTAGGGAAGGAAGCAG 59.992 47.826 0.00 0.00 0.00 4.24
2458 2831 2.930109 AGTCTAGGGAAGGAAGCAGA 57.070 50.000 0.00 0.00 0.00 4.26
2459 2832 3.191888 AGTCTAGGGAAGGAAGCAGAA 57.808 47.619 0.00 0.00 0.00 3.02
2460 2833 3.103742 AGTCTAGGGAAGGAAGCAGAAG 58.896 50.000 0.00 0.00 0.00 2.85
2461 2834 1.834263 TCTAGGGAAGGAAGCAGAAGC 59.166 52.381 0.00 0.00 42.56 3.86
2531 2904 3.203263 TCTCAGAGTACTCATAGGCACCT 59.797 47.826 24.44 0.00 0.00 4.00
2598 2971 1.525077 GGCCGTTGGACAACTCACA 60.525 57.895 12.75 0.00 39.08 3.58
2613 2986 0.475632 TCACACCCAACATCCTCCCT 60.476 55.000 0.00 0.00 0.00 4.20
2722 3095 5.532779 GTCCTCAAACTCAATCTCAAGGTTT 59.467 40.000 0.00 0.00 0.00 3.27
2796 3169 0.760567 AGGACACTCACCAGCAGTCA 60.761 55.000 0.00 0.00 32.24 3.41
2825 3198 2.228480 TTGGCTCGGGTAAAGGCCT 61.228 57.895 0.00 0.00 44.36 5.19
2950 3323 2.856000 AGAGGCTTGCCCTGTGGT 60.856 61.111 8.17 0.00 46.60 4.16
2993 3366 1.696336 ACTCAAGGATGCACTCTGTGT 59.304 47.619 0.00 0.00 35.75 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 9.997482 GTTCAGAACATAAGTCTTACAAACAAA 57.003 29.630 8.54 0.00 0.00 2.83
18 19 8.617809 GGTTCAGAACATAAGTCTTACAAACAA 58.382 33.333 15.36 0.00 0.00 2.83
19 20 7.990886 AGGTTCAGAACATAAGTCTTACAAACA 59.009 33.333 15.36 0.00 0.00 2.83
20 21 8.379457 AGGTTCAGAACATAAGTCTTACAAAC 57.621 34.615 15.36 0.00 0.00 2.93
21 22 8.429641 AGAGGTTCAGAACATAAGTCTTACAAA 58.570 33.333 15.36 0.00 0.00 2.83
22 23 7.963532 AGAGGTTCAGAACATAAGTCTTACAA 58.036 34.615 15.36 0.00 0.00 2.41
23 24 7.540474 AGAGGTTCAGAACATAAGTCTTACA 57.460 36.000 15.36 0.00 0.00 2.41
24 25 8.834749 AAAGAGGTTCAGAACATAAGTCTTAC 57.165 34.615 15.36 0.00 0.00 2.34
29 30 9.793259 TGAAATAAAGAGGTTCAGAACATAAGT 57.207 29.630 15.36 0.00 0.00 2.24
45 46 9.273016 CGGCCTCTCTTATTAATGAAATAAAGA 57.727 33.333 0.00 0.00 39.10 2.52
46 47 9.057089 ACGGCCTCTCTTATTAATGAAATAAAG 57.943 33.333 0.00 0.00 39.10 1.85
47 48 8.974060 ACGGCCTCTCTTATTAATGAAATAAA 57.026 30.769 0.00 0.00 39.10 1.40
49 50 9.653287 CATACGGCCTCTCTTATTAATGAAATA 57.347 33.333 0.00 0.00 0.00 1.40
50 51 7.119846 GCATACGGCCTCTCTTATTAATGAAAT 59.880 37.037 0.00 0.00 36.11 2.17
51 52 6.426937 GCATACGGCCTCTCTTATTAATGAAA 59.573 38.462 0.00 0.00 36.11 2.69
52 53 5.932303 GCATACGGCCTCTCTTATTAATGAA 59.068 40.000 0.00 0.00 36.11 2.57
53 54 5.011635 TGCATACGGCCTCTCTTATTAATGA 59.988 40.000 0.00 0.00 43.89 2.57
54 55 5.237815 TGCATACGGCCTCTCTTATTAATG 58.762 41.667 0.00 0.00 43.89 1.90
55 56 5.483685 TGCATACGGCCTCTCTTATTAAT 57.516 39.130 0.00 0.00 43.89 1.40
56 57 4.948341 TGCATACGGCCTCTCTTATTAA 57.052 40.909 0.00 0.00 43.89 1.40
57 58 4.380550 CGATGCATACGGCCTCTCTTATTA 60.381 45.833 0.00 0.00 43.89 0.98
58 59 3.615110 CGATGCATACGGCCTCTCTTATT 60.615 47.826 0.00 0.00 43.89 1.40
59 60 2.094494 CGATGCATACGGCCTCTCTTAT 60.094 50.000 0.00 0.00 43.89 1.73
60 61 1.269723 CGATGCATACGGCCTCTCTTA 59.730 52.381 0.00 0.00 43.89 2.10
61 62 0.032678 CGATGCATACGGCCTCTCTT 59.967 55.000 0.00 0.00 43.89 2.85
62 63 0.823769 TCGATGCATACGGCCTCTCT 60.824 55.000 15.33 0.00 43.89 3.10
63 64 0.244994 ATCGATGCATACGGCCTCTC 59.755 55.000 15.33 0.00 43.89 3.20
64 65 0.244994 GATCGATGCATACGGCCTCT 59.755 55.000 0.54 0.00 43.89 3.69
65 66 0.244994 AGATCGATGCATACGGCCTC 59.755 55.000 0.54 11.04 43.89 4.70
66 67 0.037882 CAGATCGATGCATACGGCCT 60.038 55.000 0.54 10.93 43.89 5.19
67 68 0.038251 TCAGATCGATGCATACGGCC 60.038 55.000 0.54 0.00 43.89 6.13
68 69 1.657594 CATCAGATCGATGCATACGGC 59.342 52.381 0.54 9.84 44.95 5.68
77 78 0.321021 GGCCTCTGCATCAGATCGAT 59.679 55.000 0.00 0.00 39.92 3.59
78 79 1.744639 GGCCTCTGCATCAGATCGA 59.255 57.895 0.00 0.00 39.92 3.59
79 80 1.664017 CGGCCTCTGCATCAGATCG 60.664 63.158 0.00 0.00 39.92 3.69
80 81 1.301558 CCGGCCTCTGCATCAGATC 60.302 63.158 0.00 0.00 39.92 2.75
81 82 2.815945 CCCGGCCTCTGCATCAGAT 61.816 63.158 0.00 0.00 39.92 2.90
82 83 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
83 84 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
84 85 3.993865 TACCCCGGCCTCTGCATCA 62.994 63.158 0.00 0.00 40.13 3.07
85 86 2.265467 TTTACCCCGGCCTCTGCATC 62.265 60.000 0.00 0.00 40.13 3.91
86 87 2.305607 TTTACCCCGGCCTCTGCAT 61.306 57.895 0.00 0.00 40.13 3.96
87 88 2.931105 TTTACCCCGGCCTCTGCA 60.931 61.111 0.00 0.00 40.13 4.41
88 89 2.437895 GTTTACCCCGGCCTCTGC 60.438 66.667 0.00 0.00 0.00 4.26
89 90 2.271173 GGTTTACCCCGGCCTCTG 59.729 66.667 0.00 0.00 0.00 3.35
99 100 4.774660 TTTTTGGAAAAGGGGGTTTACC 57.225 40.909 0.00 0.00 39.11 2.85
120 121 8.152309 TGCTGCTGCACTTTATTTTTATTTTT 57.848 26.923 14.93 0.00 45.31 1.94
121 122 7.727331 TGCTGCTGCACTTTATTTTTATTTT 57.273 28.000 14.93 0.00 45.31 1.82
137 138 1.097232 TAACATGGTGATGCTGCTGC 58.903 50.000 8.89 8.89 40.20 5.25
138 139 2.686405 ACATAACATGGTGATGCTGCTG 59.314 45.455 0.00 0.00 32.14 4.41
139 140 2.947652 GACATAACATGGTGATGCTGCT 59.052 45.455 0.00 0.00 32.14 4.24
140 141 2.947652 AGACATAACATGGTGATGCTGC 59.052 45.455 0.00 0.00 32.14 5.25
141 142 6.682423 TTTAGACATAACATGGTGATGCTG 57.318 37.500 0.00 0.00 32.14 4.41
142 143 7.176515 TGTTTTTAGACATAACATGGTGATGCT 59.823 33.333 0.00 0.67 32.14 3.79
143 144 7.273381 GTGTTTTTAGACATAACATGGTGATGC 59.727 37.037 0.00 0.00 34.63 3.91
144 145 7.754924 GGTGTTTTTAGACATAACATGGTGATG 59.245 37.037 0.00 0.00 34.63 3.07
145 146 7.450014 TGGTGTTTTTAGACATAACATGGTGAT 59.550 33.333 0.00 0.00 34.63 3.06
146 147 6.773200 TGGTGTTTTTAGACATAACATGGTGA 59.227 34.615 0.00 0.00 34.63 4.02
158 159 3.186613 CGAGAAGGCTGGTGTTTTTAGAC 59.813 47.826 0.00 0.00 0.00 2.59
198 199 2.969628 AATGGTTGACGTGGCAAAAA 57.030 40.000 0.00 0.00 0.00 1.94
219 222 3.314541 AACTAGCCAAGTTGAGTACCG 57.685 47.619 3.87 0.00 46.90 4.02
231 234 2.566913 TCGAGCAACAAAAACTAGCCA 58.433 42.857 0.00 0.00 0.00 4.75
246 249 1.604755 ACGTGAGATAGGTGATCGAGC 59.395 52.381 0.00 0.00 39.80 5.03
249 252 1.676529 ACCACGTGAGATAGGTGATCG 59.323 52.381 19.30 0.00 45.61 3.69
263 266 6.150474 CACCCTTTATCAGAAAATAACCACGT 59.850 38.462 0.00 0.00 0.00 4.49
318 331 6.185399 GTGCATACTCACGATGTTTGTATTC 58.815 40.000 0.00 0.00 0.00 1.75
339 352 1.084370 ATCTTGTAGAAGCGGCGTGC 61.084 55.000 9.37 0.00 46.98 5.34
343 356 3.454371 TCCTAATCTTGTAGAAGCGGC 57.546 47.619 0.00 0.00 0.00 6.53
352 365 7.882791 TGTTGATTGTGTGTATCCTAATCTTGT 59.117 33.333 0.00 0.00 0.00 3.16
353 366 8.177663 GTGTTGATTGTGTGTATCCTAATCTTG 58.822 37.037 0.00 0.00 0.00 3.02
355 368 6.823689 GGTGTTGATTGTGTGTATCCTAATCT 59.176 38.462 0.00 0.00 0.00 2.40
365 378 2.429971 TGCAATGGTGTTGATTGTGTGT 59.570 40.909 0.00 0.00 33.96 3.72
366 379 2.796031 GTGCAATGGTGTTGATTGTGTG 59.204 45.455 0.00 0.00 33.96 3.82
367 380 2.429971 TGTGCAATGGTGTTGATTGTGT 59.570 40.909 0.00 0.00 33.96 3.72
379 392 7.259882 AGTATCATTTTATGTGTGTGCAATGG 58.740 34.615 0.00 0.00 0.00 3.16
380 393 8.692110 AAGTATCATTTTATGTGTGTGCAATG 57.308 30.769 0.00 0.00 0.00 2.82
382 395 7.176515 AGGAAGTATCATTTTATGTGTGTGCAA 59.823 33.333 0.00 0.00 0.00 4.08
409 422 7.045126 AGTTGGGACATTTATTTTGAAACGA 57.955 32.000 0.00 0.00 39.30 3.85
411 424 8.888716 ACAAAGTTGGGACATTTATTTTGAAAC 58.111 29.630 0.00 0.00 39.30 2.78
413 426 9.535878 GTACAAAGTTGGGACATTTATTTTGAA 57.464 29.630 0.00 0.00 39.30 2.69
438 451 9.310716 GTGTCTCAACTTTGTACTAAAGTTAGT 57.689 33.333 23.56 8.67 45.57 2.24
439 452 9.530633 AGTGTCTCAACTTTGTACTAAAGTTAG 57.469 33.333 23.56 20.62 45.57 2.34
440 453 9.880157 AAGTGTCTCAACTTTGTACTAAAGTTA 57.120 29.630 23.56 13.47 45.57 2.24
447 460 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
448 461 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
449 462 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
450 463 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
451 464 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
452 465 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
453 466 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
454 467 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
455 468 4.753107 TCGTCCCAAAATAAGTGTCTCAAC 59.247 41.667 0.00 0.00 0.00 3.18
473 486 4.931661 TTATCACATACTCCCTTCGTCC 57.068 45.455 0.00 0.00 0.00 4.79
499 515 1.896660 GGGTGTTTCGGAGCTTGCA 60.897 57.895 0.00 0.00 0.00 4.08
502 518 1.202879 TCAATGGGTGTTTCGGAGCTT 60.203 47.619 0.00 0.00 0.00 3.74
535 551 6.355747 TGATGTTCATGGTTGCTGATGTATA 58.644 36.000 0.00 0.00 0.00 1.47
536 552 5.195185 TGATGTTCATGGTTGCTGATGTAT 58.805 37.500 0.00 0.00 0.00 2.29
537 553 4.587891 TGATGTTCATGGTTGCTGATGTA 58.412 39.130 0.00 0.00 0.00 2.29
549 568 3.008835 AGGTGGTGGATGATGTTCATG 57.991 47.619 0.00 0.00 37.20 3.07
649 668 1.069204 CATGGAGAACCGACGATGGAT 59.931 52.381 0.00 0.00 39.42 3.41
657 676 0.895530 GTCTGTCCATGGAGAACCGA 59.104 55.000 16.81 4.82 39.42 4.69
691 710 1.024046 CGTTCATGTCGCCATTCCCA 61.024 55.000 0.00 0.00 0.00 4.37
692 711 0.742990 TCGTTCATGTCGCCATTCCC 60.743 55.000 7.84 0.00 0.00 3.97
695 714 0.930310 CGATCGTTCATGTCGCCATT 59.070 50.000 7.03 0.00 0.00 3.16
787 806 1.284198 AGAGGAAACAGAGGCATGCAT 59.716 47.619 21.36 13.78 0.00 3.96
788 807 0.694771 AGAGGAAACAGAGGCATGCA 59.305 50.000 21.36 0.00 0.00 3.96
789 808 1.065564 AGAGAGGAAACAGAGGCATGC 60.066 52.381 9.90 9.90 0.00 4.06
790 809 3.431486 GGTAGAGAGGAAACAGAGGCATG 60.431 52.174 0.00 0.00 0.00 4.06
791 810 2.769095 GGTAGAGAGGAAACAGAGGCAT 59.231 50.000 0.00 0.00 0.00 4.40
856 875 0.686789 TCCCTCGTCCCATGCATATG 59.313 55.000 0.00 0.00 0.00 1.78
857 876 0.687354 GTCCCTCGTCCCATGCATAT 59.313 55.000 0.00 0.00 0.00 1.78
858 877 1.744320 CGTCCCTCGTCCCATGCATA 61.744 60.000 0.00 0.00 34.52 3.14
859 878 2.911143 GTCCCTCGTCCCATGCAT 59.089 61.111 0.00 0.00 0.00 3.96
860 879 3.770040 CGTCCCTCGTCCCATGCA 61.770 66.667 0.00 0.00 34.52 3.96
861 880 3.432051 CTCGTCCCTCGTCCCATGC 62.432 68.421 0.00 0.00 40.80 4.06
862 881 1.753078 TCTCGTCCCTCGTCCCATG 60.753 63.158 0.00 0.00 40.80 3.66
863 882 1.753463 GTCTCGTCCCTCGTCCCAT 60.753 63.158 0.00 0.00 40.80 4.00
864 883 2.360852 GTCTCGTCCCTCGTCCCA 60.361 66.667 0.00 0.00 40.80 4.37
865 884 1.321074 ATTGTCTCGTCCCTCGTCCC 61.321 60.000 0.00 0.00 40.80 4.46
866 885 0.100861 GATTGTCTCGTCCCTCGTCC 59.899 60.000 0.00 0.00 40.80 4.79
925 1080 2.007608 GACCCGCGAGCTCTTAATTTT 58.992 47.619 8.23 0.00 0.00 1.82
1374 1747 4.463879 CAGCTGGGTCCGGAGCAG 62.464 72.222 32.94 26.35 37.70 4.24
1531 1904 3.838271 GCCGGATGAGCGGTCAGA 61.838 66.667 23.06 0.00 35.66 3.27
1638 2011 3.485745 CCCCGGTCGGCCCTAAAT 61.486 66.667 0.00 0.00 0.00 1.40
1938 2311 0.676782 GGCCGGTGAAGTTGTAGCAT 60.677 55.000 1.90 0.00 0.00 3.79
2177 2550 1.901464 AACCCAACCATGTCCGCAC 60.901 57.895 0.00 0.00 0.00 5.34
2202 2575 1.956170 CCATGATACGCAGCGGTCC 60.956 63.158 21.15 7.68 0.00 4.46
2213 2586 5.601583 TTAGCACCGAAACTACCATGATA 57.398 39.130 0.00 0.00 0.00 2.15
2215 2588 3.965379 TTAGCACCGAAACTACCATGA 57.035 42.857 0.00 0.00 0.00 3.07
2216 2589 4.092968 GTCTTTAGCACCGAAACTACCATG 59.907 45.833 0.00 0.00 0.00 3.66
2219 2592 3.678548 CAGTCTTTAGCACCGAAACTACC 59.321 47.826 0.00 0.00 0.00 3.18
2227 2600 0.865769 AAACGCAGTCTTTAGCACCG 59.134 50.000 0.00 0.00 45.00 4.94
2228 2601 3.064931 AGTAAACGCAGTCTTTAGCACC 58.935 45.455 0.00 0.00 45.00 5.01
2229 2602 4.455124 CAAGTAAACGCAGTCTTTAGCAC 58.545 43.478 0.00 0.00 45.00 4.40
2230 2603 3.059188 GCAAGTAAACGCAGTCTTTAGCA 60.059 43.478 0.00 0.00 45.00 3.49
2231 2604 3.479949 GCAAGTAAACGCAGTCTTTAGC 58.520 45.455 0.00 0.00 45.00 3.09
2232 2605 3.722123 CGCAAGTAAACGCAGTCTTTAG 58.278 45.455 0.00 0.00 45.00 1.85
2233 2606 3.781341 CGCAAGTAAACGCAGTCTTTA 57.219 42.857 0.00 0.00 45.00 1.85
2234 2607 2.663279 CGCAAGTAAACGCAGTCTTT 57.337 45.000 0.00 0.00 45.00 2.52
2249 2622 7.315247 AGTAATTAATAAGACATGCACGCAA 57.685 32.000 0.00 0.00 0.00 4.85
2250 2623 6.018262 GGAGTAATTAATAAGACATGCACGCA 60.018 38.462 0.00 0.00 0.00 5.24
2251 2624 6.202954 AGGAGTAATTAATAAGACATGCACGC 59.797 38.462 0.00 0.00 0.00 5.34
2252 2625 7.224753 ACAGGAGTAATTAATAAGACATGCACG 59.775 37.037 0.00 0.00 0.00 5.34
2253 2626 8.438676 ACAGGAGTAATTAATAAGACATGCAC 57.561 34.615 0.00 0.00 0.00 4.57
2254 2627 9.461312 AAACAGGAGTAATTAATAAGACATGCA 57.539 29.630 0.00 0.00 0.00 3.96
2262 2635 9.895138 GGTGGAGTAAACAGGAGTAATTAATAA 57.105 33.333 0.00 0.00 0.00 1.40
2263 2636 9.275572 AGGTGGAGTAAACAGGAGTAATTAATA 57.724 33.333 0.00 0.00 0.00 0.98
2264 2637 8.159229 AGGTGGAGTAAACAGGAGTAATTAAT 57.841 34.615 0.00 0.00 0.00 1.40
2265 2638 7.236019 TGAGGTGGAGTAAACAGGAGTAATTAA 59.764 37.037 0.00 0.00 0.00 1.40
2266 2639 6.727231 TGAGGTGGAGTAAACAGGAGTAATTA 59.273 38.462 0.00 0.00 0.00 1.40
2267 2640 5.546499 TGAGGTGGAGTAAACAGGAGTAATT 59.454 40.000 0.00 0.00 0.00 1.40
2268 2641 5.046520 GTGAGGTGGAGTAAACAGGAGTAAT 60.047 44.000 0.00 0.00 0.00 1.89
2269 2642 4.282703 GTGAGGTGGAGTAAACAGGAGTAA 59.717 45.833 0.00 0.00 0.00 2.24
2270 2643 3.830755 GTGAGGTGGAGTAAACAGGAGTA 59.169 47.826 0.00 0.00 0.00 2.59
2271 2644 2.633481 GTGAGGTGGAGTAAACAGGAGT 59.367 50.000 0.00 0.00 0.00 3.85
2272 2645 2.900546 AGTGAGGTGGAGTAAACAGGAG 59.099 50.000 0.00 0.00 0.00 3.69
2273 2646 2.897969 GAGTGAGGTGGAGTAAACAGGA 59.102 50.000 0.00 0.00 0.00 3.86
2274 2647 2.900546 AGAGTGAGGTGGAGTAAACAGG 59.099 50.000 0.00 0.00 0.00 4.00
2275 2648 4.282195 AGAAGAGTGAGGTGGAGTAAACAG 59.718 45.833 0.00 0.00 0.00 3.16
2276 2649 4.223953 AGAAGAGTGAGGTGGAGTAAACA 58.776 43.478 0.00 0.00 0.00 2.83
2277 2650 4.875561 AGAAGAGTGAGGTGGAGTAAAC 57.124 45.455 0.00 0.00 0.00 2.01
2278 2651 4.899457 TGAAGAAGAGTGAGGTGGAGTAAA 59.101 41.667 0.00 0.00 0.00 2.01
2279 2652 4.480115 TGAAGAAGAGTGAGGTGGAGTAA 58.520 43.478 0.00 0.00 0.00 2.24
2280 2653 4.114015 TGAAGAAGAGTGAGGTGGAGTA 57.886 45.455 0.00 0.00 0.00 2.59
2281 2654 2.964209 TGAAGAAGAGTGAGGTGGAGT 58.036 47.619 0.00 0.00 0.00 3.85
2282 2655 3.513119 TGATGAAGAAGAGTGAGGTGGAG 59.487 47.826 0.00 0.00 0.00 3.86
2283 2656 3.510459 TGATGAAGAAGAGTGAGGTGGA 58.490 45.455 0.00 0.00 0.00 4.02
2284 2657 3.513119 TCTGATGAAGAAGAGTGAGGTGG 59.487 47.826 0.00 0.00 29.54 4.61
2285 2658 4.797800 TCTGATGAAGAAGAGTGAGGTG 57.202 45.455 0.00 0.00 29.54 4.00
2286 2659 5.338219 CCAATCTGATGAAGAAGAGTGAGGT 60.338 44.000 2.00 0.00 40.12 3.85
2287 2660 5.117584 CCAATCTGATGAAGAAGAGTGAGG 58.882 45.833 2.00 0.00 40.12 3.86
2288 2661 4.571580 GCCAATCTGATGAAGAAGAGTGAG 59.428 45.833 2.00 0.00 40.12 3.51
2289 2662 4.224594 AGCCAATCTGATGAAGAAGAGTGA 59.775 41.667 2.00 0.00 40.12 3.41
2290 2663 4.515361 AGCCAATCTGATGAAGAAGAGTG 58.485 43.478 0.00 0.00 38.79 3.51
2291 2664 4.840716 AGCCAATCTGATGAAGAAGAGT 57.159 40.909 0.00 0.00 38.79 3.24
2292 2665 4.575645 GGAAGCCAATCTGATGAAGAAGAG 59.424 45.833 0.00 0.00 38.79 2.85
2293 2666 4.019051 TGGAAGCCAATCTGATGAAGAAGA 60.019 41.667 0.00 0.00 38.79 2.87
2294 2667 4.267536 TGGAAGCCAATCTGATGAAGAAG 58.732 43.478 0.00 0.00 38.79 2.85
2295 2668 4.267536 CTGGAAGCCAATCTGATGAAGAA 58.732 43.478 0.00 0.00 38.79 2.52
2296 2669 3.371273 CCTGGAAGCCAATCTGATGAAGA 60.371 47.826 0.00 0.00 39.94 2.87
2297 2670 2.950309 CCTGGAAGCCAATCTGATGAAG 59.050 50.000 0.00 0.00 30.80 3.02
2298 2671 2.947243 GCCTGGAAGCCAATCTGATGAA 60.947 50.000 0.00 0.00 30.80 2.57
2299 2672 1.409241 GCCTGGAAGCCAATCTGATGA 60.409 52.381 0.00 0.00 30.80 2.92
2300 2673 1.030457 GCCTGGAAGCCAATCTGATG 58.970 55.000 0.00 0.00 30.80 3.07
2301 2674 0.465097 CGCCTGGAAGCCAATCTGAT 60.465 55.000 0.00 0.00 30.80 2.90
2302 2675 1.078214 CGCCTGGAAGCCAATCTGA 60.078 57.895 0.00 0.00 30.80 3.27
2303 2676 0.677731 TTCGCCTGGAAGCCAATCTG 60.678 55.000 0.00 0.00 30.80 2.90
2304 2677 0.038166 TTTCGCCTGGAAGCCAATCT 59.962 50.000 0.00 0.00 35.70 2.40
2305 2678 1.106285 ATTTCGCCTGGAAGCCAATC 58.894 50.000 0.00 0.00 35.70 2.67
2306 2679 0.819582 CATTTCGCCTGGAAGCCAAT 59.180 50.000 0.00 0.00 35.70 3.16
2307 2680 0.251121 TCATTTCGCCTGGAAGCCAA 60.251 50.000 0.00 0.00 35.70 4.52
2308 2681 0.677731 CTCATTTCGCCTGGAAGCCA 60.678 55.000 0.00 0.00 35.70 4.75
2309 2682 0.392998 TCTCATTTCGCCTGGAAGCC 60.393 55.000 0.00 0.00 35.70 4.35
2310 2683 1.453155 TTCTCATTTCGCCTGGAAGC 58.547 50.000 0.00 0.00 35.70 3.86
2311 2684 3.077359 AGTTTCTCATTTCGCCTGGAAG 58.923 45.455 0.00 0.00 35.70 3.46
2312 2685 3.140325 AGTTTCTCATTTCGCCTGGAA 57.860 42.857 0.00 0.00 0.00 3.53
2313 2686 2.859165 AGTTTCTCATTTCGCCTGGA 57.141 45.000 0.00 0.00 0.00 3.86
2314 2687 2.352960 GCTAGTTTCTCATTTCGCCTGG 59.647 50.000 0.00 0.00 0.00 4.45
2315 2688 2.029728 CGCTAGTTTCTCATTTCGCCTG 59.970 50.000 0.00 0.00 0.00 4.85
2316 2689 2.271800 CGCTAGTTTCTCATTTCGCCT 58.728 47.619 0.00 0.00 0.00 5.52
2317 2690 2.000447 ACGCTAGTTTCTCATTTCGCC 59.000 47.619 0.00 0.00 0.00 5.54
2318 2691 2.284514 CGACGCTAGTTTCTCATTTCGC 60.285 50.000 0.00 0.00 0.00 4.70
2319 2692 2.279136 CCGACGCTAGTTTCTCATTTCG 59.721 50.000 0.00 0.00 0.00 3.46
2320 2693 3.508762 TCCGACGCTAGTTTCTCATTTC 58.491 45.455 0.00 0.00 0.00 2.17
2321 2694 3.587797 TCCGACGCTAGTTTCTCATTT 57.412 42.857 0.00 0.00 0.00 2.32
2322 2695 3.491104 GGATCCGACGCTAGTTTCTCATT 60.491 47.826 0.00 0.00 0.00 2.57
2323 2696 2.034812 GGATCCGACGCTAGTTTCTCAT 59.965 50.000 0.00 0.00 0.00 2.90
2324 2697 1.404391 GGATCCGACGCTAGTTTCTCA 59.596 52.381 0.00 0.00 0.00 3.27
2325 2698 1.404391 TGGATCCGACGCTAGTTTCTC 59.596 52.381 7.39 0.00 0.00 2.87
2326 2699 1.471119 TGGATCCGACGCTAGTTTCT 58.529 50.000 7.39 0.00 0.00 2.52
2327 2700 2.395654 GATGGATCCGACGCTAGTTTC 58.604 52.381 7.39 0.00 0.00 2.78
2328 2701 1.068741 GGATGGATCCGACGCTAGTTT 59.931 52.381 7.39 0.00 37.19 2.66
2329 2702 0.674534 GGATGGATCCGACGCTAGTT 59.325 55.000 7.39 0.00 37.19 2.24
2330 2703 2.342478 GGATGGATCCGACGCTAGT 58.658 57.895 7.39 0.00 37.19 2.57
2367 2740 3.427573 GGATCTCCCCCTTTTCGAAAAA 58.572 45.455 22.67 7.95 0.00 1.94
2368 2741 3.081710 GGATCTCCCCCTTTTCGAAAA 57.918 47.619 21.35 21.35 0.00 2.29
2369 2742 2.801077 GGATCTCCCCCTTTTCGAAA 57.199 50.000 6.47 6.47 0.00 3.46
2381 2754 2.503382 GCAGAGGTCGGGGATCTCC 61.503 68.421 0.00 0.00 40.39 3.71
2382 2755 1.118356 ATGCAGAGGTCGGGGATCTC 61.118 60.000 0.00 0.00 39.87 2.75
2383 2756 1.074926 ATGCAGAGGTCGGGGATCT 60.075 57.895 0.00 0.00 0.00 2.75
2384 2757 1.369321 GATGCAGAGGTCGGGGATC 59.631 63.158 0.00 0.00 0.00 3.36
2385 2758 1.383109 TGATGCAGAGGTCGGGGAT 60.383 57.895 0.00 0.00 0.00 3.85
2386 2759 2.038813 TGATGCAGAGGTCGGGGA 59.961 61.111 0.00 0.00 0.00 4.81
2387 2760 1.617018 TTCTGATGCAGAGGTCGGGG 61.617 60.000 0.00 0.00 41.75 5.73
2388 2761 0.460987 GTTCTGATGCAGAGGTCGGG 60.461 60.000 0.00 0.00 41.75 5.14
2389 2762 0.803768 CGTTCTGATGCAGAGGTCGG 60.804 60.000 0.00 0.00 41.75 4.79
2390 2763 0.171231 TCGTTCTGATGCAGAGGTCG 59.829 55.000 0.00 0.00 41.75 4.79
2391 2764 2.593346 ATCGTTCTGATGCAGAGGTC 57.407 50.000 0.00 0.00 41.75 3.85
2400 2773 0.752658 TCCGGATGCATCGTTCTGAT 59.247 50.000 20.15 0.00 38.01 2.90
2401 2774 0.103026 CTCCGGATGCATCGTTCTGA 59.897 55.000 20.15 10.49 0.00 3.27
2402 2775 0.103026 TCTCCGGATGCATCGTTCTG 59.897 55.000 20.15 9.33 0.00 3.02
2403 2776 0.387202 CTCTCCGGATGCATCGTTCT 59.613 55.000 20.15 0.00 0.00 3.01
2404 2777 1.218230 GCTCTCCGGATGCATCGTTC 61.218 60.000 20.15 6.01 0.00 3.95
2405 2778 1.227380 GCTCTCCGGATGCATCGTT 60.227 57.895 20.15 0.00 0.00 3.85
2406 2779 2.419198 GCTCTCCGGATGCATCGT 59.581 61.111 20.15 0.00 0.00 3.73
2407 2780 2.356793 GGCTCTCCGGATGCATCG 60.357 66.667 24.61 14.71 0.00 3.84
2408 2781 0.673022 GATGGCTCTCCGGATGCATC 60.673 60.000 24.61 18.81 34.14 3.91
2409 2782 1.126329 AGATGGCTCTCCGGATGCAT 61.126 55.000 24.61 17.51 34.14 3.96
2410 2783 0.469892 TAGATGGCTCTCCGGATGCA 60.470 55.000 24.61 14.52 32.66 3.96
2411 2784 0.037790 GTAGATGGCTCTCCGGATGC 60.038 60.000 18.01 18.01 32.66 3.91
2412 2785 0.605589 GGTAGATGGCTCTCCGGATG 59.394 60.000 3.57 1.79 32.66 3.51
2413 2786 0.485099 AGGTAGATGGCTCTCCGGAT 59.515 55.000 3.57 0.00 32.66 4.18
2414 2787 0.178987 GAGGTAGATGGCTCTCCGGA 60.179 60.000 2.93 2.93 32.66 5.14
2415 2788 0.178975 AGAGGTAGATGGCTCTCCGG 60.179 60.000 0.00 0.00 32.66 5.14
2416 2789 2.156098 GTAGAGGTAGATGGCTCTCCG 58.844 57.143 0.00 0.00 32.66 4.63
2417 2790 3.231207 TGTAGAGGTAGATGGCTCTCC 57.769 52.381 0.00 0.00 32.66 3.71
2418 2791 4.647399 ACTTTGTAGAGGTAGATGGCTCTC 59.353 45.833 0.00 0.00 32.66 3.20
2419 2792 4.615513 ACTTTGTAGAGGTAGATGGCTCT 58.384 43.478 0.00 0.00 35.39 4.09
2420 2793 4.647399 AGACTTTGTAGAGGTAGATGGCTC 59.353 45.833 0.00 0.00 0.00 4.70
2421 2794 4.615513 AGACTTTGTAGAGGTAGATGGCT 58.384 43.478 0.00 0.00 0.00 4.75
2422 2795 5.010213 CCTAGACTTTGTAGAGGTAGATGGC 59.990 48.000 0.00 0.00 0.00 4.40
2423 2796 5.536916 CCCTAGACTTTGTAGAGGTAGATGG 59.463 48.000 0.00 0.00 0.00 3.51
2424 2797 6.366340 TCCCTAGACTTTGTAGAGGTAGATG 58.634 44.000 0.00 0.00 0.00 2.90
2425 2798 6.593759 TCCCTAGACTTTGTAGAGGTAGAT 57.406 41.667 0.00 0.00 0.00 1.98
2426 2799 6.398655 TTCCCTAGACTTTGTAGAGGTAGA 57.601 41.667 0.00 0.00 0.00 2.59
2427 2800 5.595133 CCTTCCCTAGACTTTGTAGAGGTAG 59.405 48.000 0.00 0.00 0.00 3.18
2428 2801 5.254737 TCCTTCCCTAGACTTTGTAGAGGTA 59.745 44.000 0.00 0.00 0.00 3.08
2429 2802 4.045590 TCCTTCCCTAGACTTTGTAGAGGT 59.954 45.833 0.00 0.00 0.00 3.85
2430 2803 4.611367 TCCTTCCCTAGACTTTGTAGAGG 58.389 47.826 0.00 0.00 0.00 3.69
2431 2804 5.394773 GCTTCCTTCCCTAGACTTTGTAGAG 60.395 48.000 0.00 0.00 0.00 2.43
2432 2805 4.466726 GCTTCCTTCCCTAGACTTTGTAGA 59.533 45.833 0.00 0.00 0.00 2.59
2433 2806 4.223032 TGCTTCCTTCCCTAGACTTTGTAG 59.777 45.833 0.00 0.00 0.00 2.74
2434 2807 4.164981 TGCTTCCTTCCCTAGACTTTGTA 58.835 43.478 0.00 0.00 0.00 2.41
2435 2808 2.979678 TGCTTCCTTCCCTAGACTTTGT 59.020 45.455 0.00 0.00 0.00 2.83
2436 2809 3.261897 TCTGCTTCCTTCCCTAGACTTTG 59.738 47.826 0.00 0.00 0.00 2.77
2437 2810 3.521727 TCTGCTTCCTTCCCTAGACTTT 58.478 45.455 0.00 0.00 0.00 2.66
2438 2811 3.191888 TCTGCTTCCTTCCCTAGACTT 57.808 47.619 0.00 0.00 0.00 3.01
2439 2812 2.930109 TCTGCTTCCTTCCCTAGACT 57.070 50.000 0.00 0.00 0.00 3.24
2440 2813 2.419436 GCTTCTGCTTCCTTCCCTAGAC 60.419 54.545 0.00 0.00 36.03 2.59
2441 2814 1.834263 GCTTCTGCTTCCTTCCCTAGA 59.166 52.381 0.00 0.00 36.03 2.43
2442 2815 2.323968 GCTTCTGCTTCCTTCCCTAG 57.676 55.000 0.00 0.00 36.03 3.02
2454 2827 1.601759 TTGTGGAGCCAGCTTCTGC 60.602 57.895 0.00 0.00 40.05 4.26
2455 2828 1.239968 GGTTGTGGAGCCAGCTTCTG 61.240 60.000 0.00 0.00 0.00 3.02
2456 2829 1.073897 GGTTGTGGAGCCAGCTTCT 59.926 57.895 0.00 0.00 0.00 2.85
2457 2830 0.324943 TAGGTTGTGGAGCCAGCTTC 59.675 55.000 0.00 0.00 0.00 3.86
2458 2831 0.326264 CTAGGTTGTGGAGCCAGCTT 59.674 55.000 0.00 0.00 0.00 3.74
2459 2832 1.557269 CCTAGGTTGTGGAGCCAGCT 61.557 60.000 0.00 0.00 0.00 4.24
2460 2833 1.078143 CCTAGGTTGTGGAGCCAGC 60.078 63.158 0.00 0.00 0.00 4.85
2461 2834 0.539051 CTCCTAGGTTGTGGAGCCAG 59.461 60.000 9.08 0.00 42.62 4.85
2462 2835 0.909610 CCTCCTAGGTTGTGGAGCCA 60.910 60.000 9.08 0.00 46.23 4.75
2463 2836 0.617820 TCCTCCTAGGTTGTGGAGCC 60.618 60.000 9.08 0.00 46.23 4.70
2501 2874 7.560368 CCTATGAGTACTCTGAGATTTGGTTT 58.440 38.462 23.01 0.00 0.00 3.27
2578 2951 2.430367 GAGTTGTCCAACGGCCCT 59.570 61.111 0.00 0.00 45.50 5.19
2598 2971 1.991230 CGAAGGGAGGATGTTGGGT 59.009 57.895 0.00 0.00 0.00 4.51
2613 2986 0.528249 GGGTAATACGGAAGCGCGAA 60.528 55.000 12.10 0.00 0.00 4.70
2722 3095 2.976882 GACACATAGGGGCCAGGTATAA 59.023 50.000 4.39 0.00 0.00 0.98
2877 3250 1.168714 GAAGCCGCTTCAGGATGTTT 58.831 50.000 25.19 0.00 39.95 2.83
2879 3252 1.448540 CGAAGCCGCTTCAGGATGT 60.449 57.895 28.20 0.00 40.17 3.06
2950 3323 6.043243 AGTTTCATGAGTGGAAGAAGGTAGAA 59.957 38.462 0.00 0.00 0.00 2.10
2993 3366 0.685097 GGGTTGTGCAGAGTACCTGA 59.315 55.000 13.57 0.00 45.78 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.