Multiple sequence alignment - TraesCS3B01G034900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G034900 chr3B 100.000 3047 0 0 1 3047 16957587 16960633 0.000000e+00 5627
1 TraesCS3B01G034900 chr3B 95.306 1129 36 3 811 1933 16758344 16757227 0.000000e+00 1775
2 TraesCS3B01G034900 chr3B 96.273 966 35 1 966 1930 16692581 16693546 0.000000e+00 1583
3 TraesCS3B01G034900 chr3B 92.513 788 54 5 1 786 16759125 16758341 0.000000e+00 1123
4 TraesCS3B01G034900 chr3B 86.645 936 112 6 1007 1930 25219962 25220896 0.000000e+00 1024
5 TraesCS3B01G034900 chr3B 85.836 939 120 6 1007 1933 16079711 16078774 0.000000e+00 985
6 TraesCS3B01G034900 chr3B 89.177 693 52 11 2378 3047 532225735 532225043 0.000000e+00 843
7 TraesCS3B01G034900 chr3B 87.297 677 76 10 2378 3047 409821845 409821172 0.000000e+00 765
8 TraesCS3B01G034900 chr3B 92.246 374 28 1 268 641 16676471 16676843 2.080000e-146 529
9 TraesCS3B01G034900 chr3B 82.765 557 61 16 45 578 16980691 16981235 5.950000e-127 464
10 TraesCS3B01G034900 chr3B 94.650 243 12 1 1 242 16670657 16670899 2.870000e-100 375
11 TraesCS3B01G034900 chr3B 95.918 147 4 1 1927 2071 16853015 16852869 1.410000e-58 237
12 TraesCS3B01G034900 chr3B 95.270 148 6 1 2230 2377 16852870 16852724 1.830000e-57 233
13 TraesCS3B01G034900 chr3B 89.412 170 18 0 2066 2235 602591116 602591285 6.620000e-52 215
14 TraesCS3B01G034900 chr3B 90.683 161 14 1 2066 2225 193722967 193723127 2.380000e-51 213
15 TraesCS3B01G034900 chr3B 90.184 163 15 1 2063 2225 78399836 78399997 8.560000e-51 211
16 TraesCS3B01G034900 chr3B 97.436 117 3 0 1955 2071 16733218 16733334 1.850000e-47 200
17 TraesCS3B01G034900 chr3B 85.000 160 16 7 421 574 16692132 16692289 4.070000e-34 156
18 TraesCS3B01G034900 chr3B 97.143 70 2 0 2224 2293 16733327 16733396 5.340000e-23 119
19 TraesCS3B01G034900 chr3D 90.486 967 88 4 966 1930 11795099 11796063 0.000000e+00 1273
20 TraesCS3B01G034900 chr3D 86.985 922 108 5 1024 1933 11417736 11416815 0.000000e+00 1027
21 TraesCS3B01G034900 chr3D 83.885 937 134 12 1008 1930 707927 708860 0.000000e+00 878
22 TraesCS3B01G034900 chr3D 91.720 157 13 0 2069 2225 119413111 119413267 5.110000e-53 219
23 TraesCS3B01G034900 chr3D 91.667 156 13 0 2070 2225 486739689 486739844 1.840000e-52 217
24 TraesCS3B01G034900 chr3D 83.796 216 27 2 421 628 11794673 11794888 6.660000e-47 198
25 TraesCS3B01G034900 chr3A 86.859 936 110 6 1007 1930 25896118 25897052 0.000000e+00 1035
26 TraesCS3B01G034900 chr3A 85.141 922 131 5 1018 1933 8910250 8909329 0.000000e+00 939
27 TraesCS3B01G034900 chr3A 86.455 347 47 0 1584 1930 25770241 25770587 6.160000e-102 381
28 TraesCS3B01G034900 chr3A 81.383 376 43 9 1 351 25234000 25233627 6.430000e-72 281
29 TraesCS3B01G034900 chr3A 90.741 162 15 0 2064 2225 581269294 581269133 1.840000e-52 217
30 TraesCS3B01G034900 chr3A 84.932 146 14 6 725 866 25233345 25233204 1.140000e-29 141
31 TraesCS3B01G034900 chr2B 88.745 693 54 12 2378 3046 745768023 745767331 0.000000e+00 826
32 TraesCS3B01G034900 chr2B 88.395 698 58 8 2373 3047 76075196 76075893 0.000000e+00 819
33 TraesCS3B01G034900 chr1D 88.345 695 55 11 2378 3047 228025508 228024815 0.000000e+00 811
34 TraesCS3B01G034900 chr2A 88.262 673 73 6 2380 3047 216517553 216516882 0.000000e+00 800
35 TraesCS3B01G034900 chr2A 87.297 677 76 10 2378 3047 735373739 735374412 0.000000e+00 765
36 TraesCS3B01G034900 chr1B 88.023 693 60 9 2378 3047 374980857 374980165 0.000000e+00 798
37 TraesCS3B01G034900 chr1B 92.357 157 12 0 2069 2225 450130780 450130936 1.100000e-54 224
38 TraesCS3B01G034900 chr4D 87.879 693 60 9 2378 3047 507549390 507550081 0.000000e+00 793
39 TraesCS3B01G034900 chr4D 92.568 296 21 1 2753 3047 503540875 503540580 1.010000e-114 424
40 TraesCS3B01G034900 chr6A 87.518 681 74 8 2378 3047 1414143 1414823 0.000000e+00 776
41 TraesCS3B01G034900 chr5B 87.157 693 65 6 2378 3047 534220629 534219938 0.000000e+00 765
42 TraesCS3B01G034900 chr7A 86.095 676 83 10 2378 3047 40135169 40134499 0.000000e+00 717
43 TraesCS3B01G034900 chr5D 91.667 156 13 0 2070 2225 296949519 296949364 1.840000e-52 217
44 TraesCS3B01G034900 chr4B 90.683 161 14 1 2066 2225 251904975 251905135 2.380000e-51 213


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G034900 chr3B 16957587 16960633 3046 False 5627.0 5627 100.0000 1 3047 1 chr3B.!!$F3 3046
1 TraesCS3B01G034900 chr3B 16757227 16759125 1898 True 1449.0 1775 93.9095 1 1933 2 chr3B.!!$R4 1932
2 TraesCS3B01G034900 chr3B 25219962 25220896 934 False 1024.0 1024 86.6450 1007 1930 1 chr3B.!!$F5 923
3 TraesCS3B01G034900 chr3B 16078774 16079711 937 True 985.0 985 85.8360 1007 1933 1 chr3B.!!$R1 926
4 TraesCS3B01G034900 chr3B 16692132 16693546 1414 False 869.5 1583 90.6365 421 1930 2 chr3B.!!$F9 1509
5 TraesCS3B01G034900 chr3B 532225043 532225735 692 True 843.0 843 89.1770 2378 3047 1 chr3B.!!$R3 669
6 TraesCS3B01G034900 chr3B 409821172 409821845 673 True 765.0 765 87.2970 2378 3047 1 chr3B.!!$R2 669
7 TraesCS3B01G034900 chr3B 16980691 16981235 544 False 464.0 464 82.7650 45 578 1 chr3B.!!$F4 533
8 TraesCS3B01G034900 chr3D 11416815 11417736 921 True 1027.0 1027 86.9850 1024 1933 1 chr3D.!!$R1 909
9 TraesCS3B01G034900 chr3D 707927 708860 933 False 878.0 878 83.8850 1008 1930 1 chr3D.!!$F1 922
10 TraesCS3B01G034900 chr3D 11794673 11796063 1390 False 735.5 1273 87.1410 421 1930 2 chr3D.!!$F4 1509
11 TraesCS3B01G034900 chr3A 25896118 25897052 934 False 1035.0 1035 86.8590 1007 1930 1 chr3A.!!$F2 923
12 TraesCS3B01G034900 chr3A 8909329 8910250 921 True 939.0 939 85.1410 1018 1933 1 chr3A.!!$R1 915
13 TraesCS3B01G034900 chr3A 25233204 25234000 796 True 211.0 281 83.1575 1 866 2 chr3A.!!$R3 865
14 TraesCS3B01G034900 chr2B 745767331 745768023 692 True 826.0 826 88.7450 2378 3046 1 chr2B.!!$R1 668
15 TraesCS3B01G034900 chr2B 76075196 76075893 697 False 819.0 819 88.3950 2373 3047 1 chr2B.!!$F1 674
16 TraesCS3B01G034900 chr1D 228024815 228025508 693 True 811.0 811 88.3450 2378 3047 1 chr1D.!!$R1 669
17 TraesCS3B01G034900 chr2A 216516882 216517553 671 True 800.0 800 88.2620 2380 3047 1 chr2A.!!$R1 667
18 TraesCS3B01G034900 chr2A 735373739 735374412 673 False 765.0 765 87.2970 2378 3047 1 chr2A.!!$F1 669
19 TraesCS3B01G034900 chr1B 374980165 374980857 692 True 798.0 798 88.0230 2378 3047 1 chr1B.!!$R1 669
20 TraesCS3B01G034900 chr4D 507549390 507550081 691 False 793.0 793 87.8790 2378 3047 1 chr4D.!!$F1 669
21 TraesCS3B01G034900 chr6A 1414143 1414823 680 False 776.0 776 87.5180 2378 3047 1 chr6A.!!$F1 669
22 TraesCS3B01G034900 chr5B 534219938 534220629 691 True 765.0 765 87.1570 2378 3047 1 chr5B.!!$R1 669
23 TraesCS3B01G034900 chr7A 40134499 40135169 670 True 717.0 717 86.0950 2378 3047 1 chr7A.!!$R1 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
527 558 0.611062 AAGACCGATGGACTCCACGA 60.611 55.0 16.87 0.0 35.8 4.35 F
1155 1213 0.904865 TCATCACCTTCGCCTCCACT 60.905 55.0 0.00 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1572 1630 0.104934 AGGGGTCAGACTTGTCCTGT 60.105 55.0 0.0 0.0 33.61 4.00 R
2343 2413 0.108585 ATGGTGTGAGGCGTGAGTTT 59.891 50.0 0.0 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.159114 GCTCTTTCACCTTTGTTTGCCA 60.159 45.455 0.00 0.00 0.00 4.92
48 49 3.329520 TGCCAACTTGGTTGTATAGAGGT 59.670 43.478 9.63 0.00 41.41 3.85
76 77 4.356405 TCCTTGTCATGTCAACTGATGT 57.644 40.909 0.98 0.00 0.00 3.06
125 126 2.139118 GTGCTTTATGCTCTCCGATCC 58.861 52.381 0.00 0.00 43.37 3.36
197 209 5.678616 GCACTACCGGCATATTTGATTTTGT 60.679 40.000 0.00 0.00 0.00 2.83
212 224 3.788227 TTTTGTCTAGTGTCAGGGCAT 57.212 42.857 0.00 0.00 0.00 4.40
309 336 6.652900 TGACATGGTTTGATTGTCGAGATTAA 59.347 34.615 0.00 0.00 42.07 1.40
322 349 6.591935 TGTCGAGATTAATTGAATAAGCCCT 58.408 36.000 0.00 0.00 0.00 5.19
365 392 1.025812 GATGATGACGGGTCTCGAGT 58.974 55.000 13.13 0.00 42.43 4.18
370 397 2.118313 TGACGGGTCTCGAGTTGATA 57.882 50.000 13.13 0.00 42.43 2.15
375 402 2.879026 CGGGTCTCGAGTTGATAGATGA 59.121 50.000 13.13 0.00 42.43 2.92
434 461 8.542497 TTTCTTAGCTAGCTTAACGAATGAAA 57.458 30.769 24.88 18.49 0.00 2.69
527 558 0.611062 AAGACCGATGGACTCCACGA 60.611 55.000 16.87 0.00 35.80 4.35
623 663 3.418913 CGCCGCACCGTCAAATGA 61.419 61.111 0.00 0.00 0.00 2.57
637 677 4.273480 CGTCAAATGATAAAATCGCTCCCT 59.727 41.667 0.00 0.00 0.00 4.20
644 684 4.219507 TGATAAAATCGCTCCCTGCAAAAA 59.780 37.500 0.00 0.00 43.06 1.94
711 751 1.750399 CACCCCACATAGCCACAGC 60.750 63.158 0.00 0.00 40.32 4.40
787 830 2.432456 TGTCTGCGCGTGATCCAC 60.432 61.111 8.43 0.00 0.00 4.02
801 846 2.869503 ATCCACGTTCCCATCACGGC 62.870 60.000 0.00 0.00 42.14 5.68
802 847 2.047274 CACGTTCCCATCACGGCT 60.047 61.111 0.00 0.00 42.14 5.52
831 880 8.614814 AGGCTATCCTATCTATAGATCAGATCC 58.385 40.741 18.59 17.01 42.06 3.36
839 888 5.681639 TCTATAGATCAGATCCGGCGATAA 58.318 41.667 9.30 0.00 0.00 1.75
896 945 6.645827 TGACAAACATGCTGTTGGATAAATTG 59.354 34.615 9.53 2.60 40.14 2.32
902 951 8.523915 ACATGCTGTTGGATAAATTGATTCTA 57.476 30.769 0.00 0.00 0.00 2.10
917 969 6.749036 TTGATTCTATCTTCCTTCCCTACC 57.251 41.667 0.00 0.00 0.00 3.18
975 1032 3.440872 GCACAACCACCGTAAATAATCCA 59.559 43.478 0.00 0.00 0.00 3.41
976 1033 4.673320 GCACAACCACCGTAAATAATCCAC 60.673 45.833 0.00 0.00 0.00 4.02
977 1034 3.685756 ACAACCACCGTAAATAATCCACG 59.314 43.478 0.00 0.00 35.50 4.94
978 1035 3.891422 ACCACCGTAAATAATCCACGA 57.109 42.857 0.00 0.00 37.89 4.35
1155 1213 0.904865 TCATCACCTTCGCCTCCACT 60.905 55.000 0.00 0.00 0.00 4.00
1266 1324 4.148825 GGCGCCACCATCGAGACT 62.149 66.667 24.80 0.00 38.86 3.24
1342 1400 4.710167 TCAGGGAGACGACGCGGA 62.710 66.667 12.47 0.00 0.00 5.54
1572 1630 4.463597 GACGTCATGTCGCCGTTA 57.536 55.556 11.55 0.00 37.96 3.18
1753 1811 4.201679 CGCTCATACGGGCCGACA 62.202 66.667 35.78 20.37 0.00 4.35
1914 1984 2.662596 CAGCGCTTCCTGTGGGTA 59.337 61.111 7.50 0.00 0.00 3.69
1919 1989 1.374947 GCTTCCTGTGGGTAGTGCA 59.625 57.895 0.00 0.00 33.29 4.57
1930 2000 2.679996 TAGTGCAGAGCCCGAGCA 60.680 61.111 0.00 0.00 43.56 4.26
1933 2003 3.630013 TGCAGAGCCCGAGCAACT 61.630 61.111 0.00 0.00 43.56 3.16
1934 2004 2.282783 TGCAGAGCCCGAGCAACTA 61.283 57.895 0.00 0.00 43.56 2.24
1935 2005 1.144936 GCAGAGCCCGAGCAACTAT 59.855 57.895 0.00 0.00 43.56 2.12
1936 2006 1.156645 GCAGAGCCCGAGCAACTATG 61.157 60.000 0.00 0.00 43.56 2.23
1937 2007 0.176680 CAGAGCCCGAGCAACTATGT 59.823 55.000 0.00 0.00 43.56 2.29
1938 2008 1.409064 CAGAGCCCGAGCAACTATGTA 59.591 52.381 0.00 0.00 43.56 2.29
1939 2009 1.409427 AGAGCCCGAGCAACTATGTAC 59.591 52.381 0.00 0.00 43.56 2.90
1940 2010 1.409427 GAGCCCGAGCAACTATGTACT 59.591 52.381 0.00 0.00 43.56 2.73
1941 2011 1.137086 AGCCCGAGCAACTATGTACTG 59.863 52.381 0.00 0.00 43.56 2.74
1942 2012 1.571919 CCCGAGCAACTATGTACTGC 58.428 55.000 0.00 0.00 36.29 4.40
1944 2014 2.361119 CCCGAGCAACTATGTACTGCTA 59.639 50.000 6.54 0.00 46.19 3.49
1945 2015 3.551046 CCCGAGCAACTATGTACTGCTAG 60.551 52.174 6.54 6.82 46.19 3.42
1946 2016 3.066900 CCGAGCAACTATGTACTGCTAGT 59.933 47.826 6.54 2.74 46.19 2.57
1947 2017 4.038361 CGAGCAACTATGTACTGCTAGTG 58.962 47.826 6.54 0.00 46.19 2.74
1948 2018 3.786635 AGCAACTATGTACTGCTAGTGC 58.213 45.455 4.85 9.51 44.44 4.40
1949 2019 2.866762 GCAACTATGTACTGCTAGTGCC 59.133 50.000 0.00 0.00 38.71 5.01
1950 2020 3.678806 GCAACTATGTACTGCTAGTGCCA 60.679 47.826 0.00 0.00 38.71 4.92
1951 2021 4.503910 CAACTATGTACTGCTAGTGCCAA 58.496 43.478 0.00 0.00 38.71 4.52
1952 2022 5.118990 CAACTATGTACTGCTAGTGCCAAT 58.881 41.667 0.00 0.00 38.71 3.16
1953 2023 4.950050 ACTATGTACTGCTAGTGCCAATC 58.050 43.478 0.00 0.00 38.71 2.67
1954 2024 3.912496 ATGTACTGCTAGTGCCAATCA 57.088 42.857 0.00 0.00 38.71 2.57
1955 2025 2.972625 TGTACTGCTAGTGCCAATCAC 58.027 47.619 0.00 0.00 45.98 3.06
1970 2040 8.273643 GTGCCAATCACATTTATTATTTCTCG 57.726 34.615 0.00 0.00 44.98 4.04
1971 2041 6.917477 TGCCAATCACATTTATTATTTCTCGC 59.083 34.615 0.00 0.00 0.00 5.03
1972 2042 6.917477 GCCAATCACATTTATTATTTCTCGCA 59.083 34.615 0.00 0.00 0.00 5.10
1973 2043 7.596248 GCCAATCACATTTATTATTTCTCGCAT 59.404 33.333 0.00 0.00 0.00 4.73
1985 2055 7.841915 TTATTTCTCGCATATTGACAGTTGA 57.158 32.000 0.00 0.00 0.00 3.18
1986 2056 5.530519 TTTCTCGCATATTGACAGTTGAC 57.469 39.130 0.00 0.00 0.00 3.18
1987 2057 4.186856 TCTCGCATATTGACAGTTGACA 57.813 40.909 0.00 0.00 0.00 3.58
1988 2058 4.176271 TCTCGCATATTGACAGTTGACAG 58.824 43.478 0.00 0.00 0.00 3.51
1989 2059 3.261580 TCGCATATTGACAGTTGACAGG 58.738 45.455 0.00 0.00 0.00 4.00
1990 2060 2.352651 CGCATATTGACAGTTGACAGGG 59.647 50.000 0.00 0.00 0.00 4.45
1991 2061 3.609853 GCATATTGACAGTTGACAGGGA 58.390 45.455 0.00 0.00 0.00 4.20
1992 2062 4.202441 GCATATTGACAGTTGACAGGGAT 58.798 43.478 0.00 0.00 0.00 3.85
1993 2063 5.368145 GCATATTGACAGTTGACAGGGATA 58.632 41.667 0.00 0.00 0.00 2.59
1994 2064 5.468072 GCATATTGACAGTTGACAGGGATAG 59.532 44.000 0.00 0.00 0.00 2.08
1995 2065 3.981071 TTGACAGTTGACAGGGATAGG 57.019 47.619 0.00 0.00 0.00 2.57
1996 2066 3.184382 TGACAGTTGACAGGGATAGGA 57.816 47.619 0.00 0.00 0.00 2.94
1997 2067 2.832129 TGACAGTTGACAGGGATAGGAC 59.168 50.000 0.00 0.00 0.00 3.85
1998 2068 2.168728 GACAGTTGACAGGGATAGGACC 59.831 54.545 0.00 0.00 0.00 4.46
1999 2069 2.225650 ACAGTTGACAGGGATAGGACCT 60.226 50.000 0.00 0.00 39.43 3.85
2000 2070 2.432510 CAGTTGACAGGGATAGGACCTC 59.567 54.545 0.00 0.00 35.78 3.85
2001 2071 1.409427 GTTGACAGGGATAGGACCTCG 59.591 57.143 0.00 0.00 35.78 4.63
2002 2072 0.755698 TGACAGGGATAGGACCTCGC 60.756 60.000 0.00 0.00 35.78 5.03
2003 2073 0.755698 GACAGGGATAGGACCTCGCA 60.756 60.000 0.00 0.00 35.78 5.10
2004 2074 0.757188 ACAGGGATAGGACCTCGCAG 60.757 60.000 0.00 0.00 35.78 5.18
2005 2075 1.834822 AGGGATAGGACCTCGCAGC 60.835 63.158 0.00 0.00 31.01 5.25
2006 2076 1.834822 GGGATAGGACCTCGCAGCT 60.835 63.158 0.00 0.00 0.00 4.24
2007 2077 1.403687 GGGATAGGACCTCGCAGCTT 61.404 60.000 0.00 0.00 0.00 3.74
2008 2078 0.249657 GGATAGGACCTCGCAGCTTG 60.250 60.000 0.00 0.00 0.00 4.01
2009 2079 0.878086 GATAGGACCTCGCAGCTTGC 60.878 60.000 0.00 0.00 40.69 4.01
2010 2080 1.617018 ATAGGACCTCGCAGCTTGCA 61.617 55.000 0.00 0.00 45.36 4.08
2011 2081 2.507110 TAGGACCTCGCAGCTTGCAC 62.507 60.000 0.00 0.00 45.36 4.57
2012 2082 2.358003 GACCTCGCAGCTTGCACT 60.358 61.111 8.52 0.00 45.36 4.40
2013 2083 1.079819 GACCTCGCAGCTTGCACTA 60.080 57.895 8.52 0.00 45.36 2.74
2014 2084 1.079543 ACCTCGCAGCTTGCACTAG 60.080 57.895 8.52 0.00 45.36 2.57
2015 2085 1.079543 CCTCGCAGCTTGCACTAGT 60.080 57.895 8.52 0.00 45.36 2.57
2016 2086 1.357258 CCTCGCAGCTTGCACTAGTG 61.357 60.000 18.93 18.93 45.36 2.74
2017 2087 1.357258 CTCGCAGCTTGCACTAGTGG 61.357 60.000 23.95 8.99 45.36 4.00
2018 2088 2.873288 GCAGCTTGCACTAGTGGC 59.127 61.111 23.95 18.06 44.26 5.01
2019 2089 2.694760 GCAGCTTGCACTAGTGGCC 61.695 63.158 23.95 9.14 44.26 5.36
2020 2090 1.002868 CAGCTTGCACTAGTGGCCT 60.003 57.895 23.95 6.82 0.00 5.19
2021 2091 0.607489 CAGCTTGCACTAGTGGCCTT 60.607 55.000 23.95 2.17 0.00 4.35
2022 2092 0.111253 AGCTTGCACTAGTGGCCTTT 59.889 50.000 23.95 1.48 0.00 3.11
2023 2093 0.242017 GCTTGCACTAGTGGCCTTTG 59.758 55.000 23.95 7.85 0.00 2.77
2024 2094 0.242017 CTTGCACTAGTGGCCTTTGC 59.758 55.000 23.95 8.56 0.00 3.68
2025 2095 0.178992 TTGCACTAGTGGCCTTTGCT 60.179 50.000 23.95 0.00 37.74 3.91
2026 2096 0.890542 TGCACTAGTGGCCTTTGCTG 60.891 55.000 23.95 0.00 37.74 4.41
2027 2097 1.878775 CACTAGTGGCCTTTGCTGC 59.121 57.895 15.49 0.00 37.74 5.25
2028 2098 0.607489 CACTAGTGGCCTTTGCTGCT 60.607 55.000 15.49 0.00 37.74 4.24
2029 2099 0.984230 ACTAGTGGCCTTTGCTGCTA 59.016 50.000 3.32 0.00 37.74 3.49
2030 2100 1.561542 ACTAGTGGCCTTTGCTGCTAT 59.438 47.619 3.32 0.00 37.74 2.97
2031 2101 2.025887 ACTAGTGGCCTTTGCTGCTATT 60.026 45.455 3.32 0.00 37.74 1.73
2032 2102 1.928868 AGTGGCCTTTGCTGCTATTT 58.071 45.000 3.32 0.00 37.74 1.40
2033 2103 2.250924 AGTGGCCTTTGCTGCTATTTT 58.749 42.857 3.32 0.00 37.74 1.82
2034 2104 2.634453 AGTGGCCTTTGCTGCTATTTTT 59.366 40.909 3.32 0.00 37.74 1.94
2035 2105 2.738314 GTGGCCTTTGCTGCTATTTTTG 59.262 45.455 3.32 0.00 37.74 2.44
2036 2106 2.632028 TGGCCTTTGCTGCTATTTTTGA 59.368 40.909 3.32 0.00 37.74 2.69
2037 2107 2.995939 GGCCTTTGCTGCTATTTTTGAC 59.004 45.455 0.00 0.00 37.74 3.18
2038 2108 2.663119 GCCTTTGCTGCTATTTTTGACG 59.337 45.455 0.00 0.00 33.53 4.35
2039 2109 3.244976 CCTTTGCTGCTATTTTTGACGG 58.755 45.455 0.00 0.00 0.00 4.79
2040 2110 3.057596 CCTTTGCTGCTATTTTTGACGGA 60.058 43.478 0.00 0.00 0.00 4.69
2041 2111 4.545610 CTTTGCTGCTATTTTTGACGGAA 58.454 39.130 0.00 0.00 0.00 4.30
2042 2112 4.576216 TTGCTGCTATTTTTGACGGAAA 57.424 36.364 0.00 0.00 0.00 3.13
2043 2113 4.782019 TGCTGCTATTTTTGACGGAAAT 57.218 36.364 0.00 0.00 0.00 2.17
2044 2114 5.132897 TGCTGCTATTTTTGACGGAAATT 57.867 34.783 0.00 0.00 0.00 1.82
2045 2115 6.260870 TGCTGCTATTTTTGACGGAAATTA 57.739 33.333 0.00 0.00 0.00 1.40
2046 2116 6.321717 TGCTGCTATTTTTGACGGAAATTAG 58.678 36.000 0.00 0.00 0.00 1.73
2047 2117 6.150307 TGCTGCTATTTTTGACGGAAATTAGA 59.850 34.615 0.00 1.91 29.99 2.10
2048 2118 7.148086 TGCTGCTATTTTTGACGGAAATTAGAT 60.148 33.333 0.00 0.00 29.99 1.98
2049 2119 8.342634 GCTGCTATTTTTGACGGAAATTAGATA 58.657 33.333 0.00 0.00 29.99 1.98
2057 2127 9.763465 TTTTGACGGAAATTAGATATTTTCGAC 57.237 29.630 15.56 10.83 41.21 4.20
2058 2128 8.481974 TTGACGGAAATTAGATATTTTCGACA 57.518 30.769 15.56 12.88 41.21 4.35
2059 2129 8.481974 TGACGGAAATTAGATATTTTCGACAA 57.518 30.769 15.56 0.00 41.21 3.18
2060 2130 8.937884 TGACGGAAATTAGATATTTTCGACAAA 58.062 29.630 15.56 0.00 41.21 2.83
2061 2131 9.763465 GACGGAAATTAGATATTTTCGACAAAA 57.237 29.630 15.56 0.00 41.21 2.44
2081 2151 5.557576 AAAAAGTAAGTACTCCCTCCGTT 57.442 39.130 0.00 0.00 34.99 4.44
2082 2152 4.797800 AAAGTAAGTACTCCCTCCGTTC 57.202 45.455 0.00 0.00 34.99 3.95
2083 2153 2.732763 AGTAAGTACTCCCTCCGTTCC 58.267 52.381 0.00 0.00 0.00 3.62
2084 2154 2.311243 AGTAAGTACTCCCTCCGTTCCT 59.689 50.000 0.00 0.00 0.00 3.36
2085 2155 3.525199 AGTAAGTACTCCCTCCGTTCCTA 59.475 47.826 0.00 0.00 0.00 2.94
2086 2156 3.463048 AAGTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
2087 2157 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2088 2158 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2089 2159 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2090 2160 4.892345 AGTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
2091 2161 3.716431 ACTCCCTCCGTTCCTAAATACA 58.284 45.455 0.00 0.00 0.00 2.29
2092 2162 4.098894 ACTCCCTCCGTTCCTAAATACAA 58.901 43.478 0.00 0.00 0.00 2.41
2093 2163 4.161754 ACTCCCTCCGTTCCTAAATACAAG 59.838 45.833 0.00 0.00 0.00 3.16
2094 2164 4.098894 TCCCTCCGTTCCTAAATACAAGT 58.901 43.478 0.00 0.00 0.00 3.16
2095 2165 4.161001 TCCCTCCGTTCCTAAATACAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
2096 2166 4.161754 CCCTCCGTTCCTAAATACAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
2097 2167 5.338137 CCCTCCGTTCCTAAATACAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2098 2168 6.171213 CCTCCGTTCCTAAATACAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2099 2169 6.092259 CCTCCGTTCCTAAATACAAGTCTTTG 59.908 42.308 0.00 0.00 40.24 2.77
2129 2199 9.823647 AGATTTCACTATAAACTACACATGGAG 57.176 33.333 0.00 0.00 0.00 3.86
2130 2200 7.843490 TTTCACTATAAACTACACATGGAGC 57.157 36.000 0.00 0.00 0.00 4.70
2131 2201 6.538945 TCACTATAAACTACACATGGAGCA 57.461 37.500 0.00 0.00 0.00 4.26
2132 2202 6.941857 TCACTATAAACTACACATGGAGCAA 58.058 36.000 0.00 0.00 0.00 3.91
2133 2203 7.390823 TCACTATAAACTACACATGGAGCAAA 58.609 34.615 0.00 0.00 0.00 3.68
2134 2204 7.880713 TCACTATAAACTACACATGGAGCAAAA 59.119 33.333 0.00 0.00 0.00 2.44
2135 2205 8.677300 CACTATAAACTACACATGGAGCAAAAT 58.323 33.333 0.00 0.00 0.00 1.82
2136 2206 8.677300 ACTATAAACTACACATGGAGCAAAATG 58.323 33.333 0.00 0.00 0.00 2.32
2137 2207 7.701539 ATAAACTACACATGGAGCAAAATGA 57.298 32.000 0.00 0.00 0.00 2.57
2138 2208 5.633830 AACTACACATGGAGCAAAATGAG 57.366 39.130 0.00 0.00 0.00 2.90
2139 2209 4.655963 ACTACACATGGAGCAAAATGAGT 58.344 39.130 0.00 1.38 33.18 3.41
2140 2210 3.928727 ACACATGGAGCAAAATGAGTG 57.071 42.857 0.00 0.00 0.00 3.51
2141 2211 3.489355 ACACATGGAGCAAAATGAGTGA 58.511 40.909 0.00 0.00 0.00 3.41
2142 2212 3.890756 ACACATGGAGCAAAATGAGTGAA 59.109 39.130 0.00 0.00 0.00 3.18
2143 2213 4.525487 ACACATGGAGCAAAATGAGTGAAT 59.475 37.500 0.00 0.00 0.00 2.57
2144 2214 5.100259 CACATGGAGCAAAATGAGTGAATC 58.900 41.667 0.00 0.00 0.00 2.52
2145 2215 5.014858 ACATGGAGCAAAATGAGTGAATCT 58.985 37.500 0.00 0.00 0.00 2.40
2146 2216 6.094464 CACATGGAGCAAAATGAGTGAATCTA 59.906 38.462 0.00 0.00 0.00 1.98
2147 2217 6.832384 ACATGGAGCAAAATGAGTGAATCTAT 59.168 34.615 0.00 0.00 0.00 1.98
2148 2218 7.994911 ACATGGAGCAAAATGAGTGAATCTATA 59.005 33.333 0.00 0.00 0.00 1.31
2149 2219 7.792374 TGGAGCAAAATGAGTGAATCTATAC 57.208 36.000 0.00 0.00 0.00 1.47
2150 2220 7.568349 TGGAGCAAAATGAGTGAATCTATACT 58.432 34.615 0.00 0.00 0.00 2.12
2151 2221 7.712639 TGGAGCAAAATGAGTGAATCTATACTC 59.287 37.037 0.00 0.00 42.77 2.59
2152 2222 7.930865 GGAGCAAAATGAGTGAATCTATACTCT 59.069 37.037 0.00 0.00 42.86 3.24
2153 2223 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
2200 2270 9.646427 GTATGTGATTTATAGTGGAATCTCTCC 57.354 37.037 0.00 0.00 45.64 3.71
2222 2292 9.595823 TCTCCAAAGACTTATATTTAAGAACGG 57.404 33.333 9.58 3.67 38.56 4.44
2223 2293 9.595823 CTCCAAAGACTTATATTTAAGAACGGA 57.404 33.333 9.58 6.91 38.56 4.69
2224 2294 9.595823 TCCAAAGACTTATATTTAAGAACGGAG 57.404 33.333 9.58 0.00 38.56 4.63
2225 2295 9.595823 CCAAAGACTTATATTTAAGAACGGAGA 57.404 33.333 9.58 0.00 38.56 3.71
2241 2311 9.720769 AAGAACGGAGAAAATAGTTTCAATAGA 57.279 29.630 17.15 0.00 44.82 1.98
2242 2312 9.892130 AGAACGGAGAAAATAGTTTCAATAGAT 57.108 29.630 17.15 1.67 44.82 1.98
2253 2323 9.764363 AATAGTTTCAATAGATTACATCGCTGA 57.236 29.630 0.00 0.00 0.00 4.26
2254 2324 9.935241 ATAGTTTCAATAGATTACATCGCTGAT 57.065 29.630 0.00 0.00 0.00 2.90
2255 2325 8.081208 AGTTTCAATAGATTACATCGCTGATG 57.919 34.615 14.34 14.34 44.71 3.07
2256 2326 6.471976 TTCAATAGATTACATCGCTGATGC 57.528 37.500 15.41 3.31 43.15 3.91
2257 2327 4.931601 TCAATAGATTACATCGCTGATGCC 59.068 41.667 15.41 5.91 43.15 4.40
2258 2328 4.815533 ATAGATTACATCGCTGATGCCT 57.184 40.909 15.41 10.99 43.15 4.75
2259 2329 2.763933 AGATTACATCGCTGATGCCTG 58.236 47.619 15.41 0.00 43.15 4.85
2260 2330 2.366590 AGATTACATCGCTGATGCCTGA 59.633 45.455 15.41 3.59 43.15 3.86
2261 2331 2.229675 TTACATCGCTGATGCCTGAG 57.770 50.000 15.41 0.00 43.15 3.35
2262 2332 1.114627 TACATCGCTGATGCCTGAGT 58.885 50.000 15.41 1.99 43.15 3.41
2263 2333 1.114627 ACATCGCTGATGCCTGAGTA 58.885 50.000 15.41 0.00 43.15 2.59
2264 2334 1.202463 ACATCGCTGATGCCTGAGTAC 60.202 52.381 15.41 0.00 43.15 2.73
2265 2335 1.114627 ATCGCTGATGCCTGAGTACA 58.885 50.000 0.00 0.00 35.36 2.90
2266 2336 1.114627 TCGCTGATGCCTGAGTACAT 58.885 50.000 0.00 0.00 35.36 2.29
2267 2337 1.202452 TCGCTGATGCCTGAGTACATG 60.202 52.381 0.00 0.00 35.36 3.21
2268 2338 0.942962 GCTGATGCCTGAGTACATGC 59.057 55.000 0.00 0.00 37.97 4.06
2273 2343 2.028420 TGCCTGAGTACATGCATCAC 57.972 50.000 0.00 0.00 41.27 3.06
2274 2344 1.278699 TGCCTGAGTACATGCATCACA 59.721 47.619 0.00 0.00 41.27 3.58
2275 2345 1.938577 GCCTGAGTACATGCATCACAG 59.061 52.381 0.00 0.01 37.54 3.66
2276 2346 1.938577 CCTGAGTACATGCATCACAGC 59.061 52.381 0.00 0.00 0.00 4.40
2277 2347 1.938577 CTGAGTACATGCATCACAGCC 59.061 52.381 0.00 0.00 0.00 4.85
2278 2348 1.556451 TGAGTACATGCATCACAGCCT 59.444 47.619 0.00 0.00 0.00 4.58
2279 2349 2.026915 TGAGTACATGCATCACAGCCTT 60.027 45.455 0.00 0.00 0.00 4.35
2280 2350 3.012518 GAGTACATGCATCACAGCCTTT 58.987 45.455 0.00 0.00 0.00 3.11
2281 2351 3.424703 AGTACATGCATCACAGCCTTTT 58.575 40.909 0.00 0.00 0.00 2.27
2282 2352 3.828451 AGTACATGCATCACAGCCTTTTT 59.172 39.130 0.00 0.00 0.00 1.94
2283 2353 5.009631 AGTACATGCATCACAGCCTTTTTA 58.990 37.500 0.00 0.00 0.00 1.52
2284 2354 5.653769 AGTACATGCATCACAGCCTTTTTAT 59.346 36.000 0.00 0.00 0.00 1.40
2285 2355 5.002464 ACATGCATCACAGCCTTTTTATC 57.998 39.130 0.00 0.00 0.00 1.75
2286 2356 4.708421 ACATGCATCACAGCCTTTTTATCT 59.292 37.500 0.00 0.00 0.00 1.98
2287 2357 5.186409 ACATGCATCACAGCCTTTTTATCTT 59.814 36.000 0.00 0.00 0.00 2.40
2288 2358 5.726980 TGCATCACAGCCTTTTTATCTTT 57.273 34.783 0.00 0.00 0.00 2.52
2289 2359 6.832520 TGCATCACAGCCTTTTTATCTTTA 57.167 33.333 0.00 0.00 0.00 1.85
2290 2360 7.408756 TGCATCACAGCCTTTTTATCTTTAT 57.591 32.000 0.00 0.00 0.00 1.40
2291 2361 8.518430 TGCATCACAGCCTTTTTATCTTTATA 57.482 30.769 0.00 0.00 0.00 0.98
2292 2362 9.135189 TGCATCACAGCCTTTTTATCTTTATAT 57.865 29.630 0.00 0.00 0.00 0.86
2293 2363 9.971922 GCATCACAGCCTTTTTATCTTTATATT 57.028 29.630 0.00 0.00 0.00 1.28
2317 2387 2.638480 TAGCACCCCTGATTACATGC 57.362 50.000 0.00 0.00 0.00 4.06
2318 2388 0.625316 AGCACCCCTGATTACATGCA 59.375 50.000 0.00 0.00 32.70 3.96
2319 2389 1.216175 AGCACCCCTGATTACATGCAT 59.784 47.619 0.00 0.00 32.70 3.96
2320 2390 1.338973 GCACCCCTGATTACATGCATG 59.661 52.381 25.09 25.09 31.25 4.06
2321 2391 2.658285 CACCCCTGATTACATGCATGT 58.342 47.619 33.20 33.20 44.48 3.21
2322 2392 2.359848 CACCCCTGATTACATGCATGTG 59.640 50.000 36.72 21.86 41.89 3.21
2323 2393 1.338973 CCCCTGATTACATGCATGTGC 59.661 52.381 36.72 25.94 41.89 4.57
2324 2394 2.304092 CCCTGATTACATGCATGTGCT 58.696 47.619 36.72 25.00 41.89 4.40
2325 2395 2.034179 CCCTGATTACATGCATGTGCTG 59.966 50.000 36.72 26.54 41.89 4.41
2326 2396 2.686405 CCTGATTACATGCATGTGCTGT 59.314 45.455 36.72 21.39 41.89 4.40
2327 2397 3.129813 CCTGATTACATGCATGTGCTGTT 59.870 43.478 36.72 18.95 41.89 3.16
2328 2398 4.099380 TGATTACATGCATGTGCTGTTG 57.901 40.909 36.72 10.33 41.89 3.33
2329 2399 3.506844 TGATTACATGCATGTGCTGTTGT 59.493 39.130 36.72 15.76 41.89 3.32
2330 2400 4.022155 TGATTACATGCATGTGCTGTTGTT 60.022 37.500 36.72 13.48 41.89 2.83
2331 2401 5.182760 TGATTACATGCATGTGCTGTTGTTA 59.817 36.000 36.72 15.02 41.89 2.41
2332 2402 3.564235 ACATGCATGTGCTGTTGTTAG 57.436 42.857 30.92 0.61 40.03 2.34
2333 2403 2.256174 CATGCATGTGCTGTTGTTAGC 58.744 47.619 18.91 0.00 43.95 3.09
2334 2404 0.597568 TGCATGTGCTGTTGTTAGCC 59.402 50.000 6.55 0.00 43.02 3.93
2335 2405 0.883833 GCATGTGCTGTTGTTAGCCT 59.116 50.000 0.00 0.00 43.02 4.58
2336 2406 2.083774 GCATGTGCTGTTGTTAGCCTA 58.916 47.619 0.00 0.00 43.02 3.93
2337 2407 2.684881 GCATGTGCTGTTGTTAGCCTAT 59.315 45.455 0.00 0.00 43.02 2.57
2338 2408 3.242870 GCATGTGCTGTTGTTAGCCTATC 60.243 47.826 0.00 0.00 43.02 2.08
2339 2409 3.694043 TGTGCTGTTGTTAGCCTATCA 57.306 42.857 0.00 0.00 43.02 2.15
2340 2410 4.014569 TGTGCTGTTGTTAGCCTATCAA 57.985 40.909 0.00 0.00 43.02 2.57
2341 2411 4.002982 TGTGCTGTTGTTAGCCTATCAAG 58.997 43.478 0.00 0.00 43.02 3.02
2342 2412 4.003648 GTGCTGTTGTTAGCCTATCAAGT 58.996 43.478 0.00 0.00 43.02 3.16
2343 2413 5.175859 GTGCTGTTGTTAGCCTATCAAGTA 58.824 41.667 0.00 0.00 43.02 2.24
2344 2414 5.642063 GTGCTGTTGTTAGCCTATCAAGTAA 59.358 40.000 0.00 0.00 43.02 2.24
2345 2415 6.148811 GTGCTGTTGTTAGCCTATCAAGTAAA 59.851 38.462 0.00 0.00 43.02 2.01
2346 2416 6.148811 TGCTGTTGTTAGCCTATCAAGTAAAC 59.851 38.462 0.00 0.00 43.02 2.01
2347 2417 6.371825 GCTGTTGTTAGCCTATCAAGTAAACT 59.628 38.462 0.00 0.00 37.73 2.66
2348 2418 7.413109 GCTGTTGTTAGCCTATCAAGTAAACTC 60.413 40.741 0.00 0.00 37.73 3.01
2349 2419 7.446769 TGTTGTTAGCCTATCAAGTAAACTCA 58.553 34.615 0.00 0.00 0.00 3.41
2350 2420 7.386848 TGTTGTTAGCCTATCAAGTAAACTCAC 59.613 37.037 0.00 0.00 0.00 3.51
2351 2421 6.097356 TGTTAGCCTATCAAGTAAACTCACG 58.903 40.000 0.00 0.00 0.00 4.35
2352 2422 3.522553 AGCCTATCAAGTAAACTCACGC 58.477 45.455 0.00 0.00 0.00 5.34
2353 2423 2.608090 GCCTATCAAGTAAACTCACGCC 59.392 50.000 0.00 0.00 0.00 5.68
2354 2424 3.679083 GCCTATCAAGTAAACTCACGCCT 60.679 47.826 0.00 0.00 0.00 5.52
2355 2425 4.113354 CCTATCAAGTAAACTCACGCCTC 58.887 47.826 0.00 0.00 0.00 4.70
2356 2426 3.678056 ATCAAGTAAACTCACGCCTCA 57.322 42.857 0.00 0.00 0.00 3.86
2357 2427 2.750948 TCAAGTAAACTCACGCCTCAC 58.249 47.619 0.00 0.00 0.00 3.51
2358 2428 2.101750 TCAAGTAAACTCACGCCTCACA 59.898 45.455 0.00 0.00 0.00 3.58
2359 2429 2.150397 AGTAAACTCACGCCTCACAC 57.850 50.000 0.00 0.00 0.00 3.82
2360 2430 1.145803 GTAAACTCACGCCTCACACC 58.854 55.000 0.00 0.00 0.00 4.16
2361 2431 0.753867 TAAACTCACGCCTCACACCA 59.246 50.000 0.00 0.00 0.00 4.17
2362 2432 0.108585 AAACTCACGCCTCACACCAT 59.891 50.000 0.00 0.00 0.00 3.55
2363 2433 0.320771 AACTCACGCCTCACACCATC 60.321 55.000 0.00 0.00 0.00 3.51
2364 2434 1.293179 CTCACGCCTCACACCATCA 59.707 57.895 0.00 0.00 0.00 3.07
2365 2435 1.005037 TCACGCCTCACACCATCAC 60.005 57.895 0.00 0.00 0.00 3.06
2366 2436 1.004560 CACGCCTCACACCATCACT 60.005 57.895 0.00 0.00 0.00 3.41
2367 2437 1.016130 CACGCCTCACACCATCACTC 61.016 60.000 0.00 0.00 0.00 3.51
2368 2438 1.448540 CGCCTCACACCATCACTCC 60.449 63.158 0.00 0.00 0.00 3.85
2369 2439 1.892819 CGCCTCACACCATCACTCCT 61.893 60.000 0.00 0.00 0.00 3.69
2370 2440 0.392193 GCCTCACACCATCACTCCTG 60.392 60.000 0.00 0.00 0.00 3.86
2371 2441 0.251354 CCTCACACCATCACTCCTGG 59.749 60.000 0.00 0.00 39.80 4.45
2372 2442 0.251354 CTCACACCATCACTCCTGGG 59.749 60.000 0.00 0.00 38.14 4.45
2373 2443 0.178906 TCACACCATCACTCCTGGGA 60.179 55.000 0.00 0.00 38.14 4.37
2374 2444 0.914644 CACACCATCACTCCTGGGAT 59.085 55.000 0.00 0.00 38.14 3.85
2415 2485 2.479837 GCATACCGTCGATCATCCAAA 58.520 47.619 0.00 0.00 0.00 3.28
2418 2488 4.560128 CATACCGTCGATCATCCAAAGAT 58.440 43.478 0.00 0.00 0.00 2.40
2483 2555 0.895530 ACCGATATGGCTACATCCCG 59.104 55.000 0.00 0.00 43.94 5.14
2487 2559 1.562672 ATATGGCTACATCCCGGGGC 61.563 60.000 23.50 15.97 38.53 5.80
2497 2570 0.417841 ATCCCGGGGCCTGACTATAT 59.582 55.000 23.50 0.00 0.00 0.86
2501 2574 1.048601 CGGGGCCTGACTATATGTGT 58.951 55.000 6.48 0.00 0.00 3.72
2503 2576 2.158813 CGGGGCCTGACTATATGTGTTT 60.159 50.000 6.48 0.00 0.00 2.83
2535 2608 1.209504 ACTGCTACAATACCGCACCAT 59.790 47.619 0.00 0.00 0.00 3.55
2582 2656 2.203788 TCTTCCCCTGCGTCCTGT 60.204 61.111 0.00 0.00 0.00 4.00
2583 2657 2.046892 CTTCCCCTGCGTCCTGTG 60.047 66.667 0.00 0.00 0.00 3.66
2584 2658 4.329545 TTCCCCTGCGTCCTGTGC 62.330 66.667 0.00 0.00 0.00 4.57
2586 2660 3.390521 CCCCTGCGTCCTGTGCTA 61.391 66.667 0.00 0.00 0.00 3.49
2762 2845 4.228824 ACTCTAACAAACTCCACCACCTA 58.771 43.478 0.00 0.00 0.00 3.08
2812 2932 6.299805 TGTACATTGGACTTGAGCTTATCT 57.700 37.500 0.00 0.00 0.00 1.98
2855 2975 2.317371 AGACTCCATGTGACTCCACT 57.683 50.000 0.00 0.00 43.55 4.00
2857 2977 3.779444 AGACTCCATGTGACTCCACTTA 58.221 45.455 0.00 0.00 43.55 2.24
2867 2987 5.353938 TGTGACTCCACTTACAACTTGTAC 58.646 41.667 0.82 0.00 43.55 2.90
2870 2990 5.597182 TGACTCCACTTACAACTTGTACTCT 59.403 40.000 0.82 0.00 31.69 3.24
2888 3008 4.372656 ACTCTCTTCTTTTCTTGACCACG 58.627 43.478 0.00 0.00 0.00 4.94
2889 3009 4.099573 ACTCTCTTCTTTTCTTGACCACGA 59.900 41.667 0.00 0.00 0.00 4.35
2941 3061 6.245408 TGTTACTCTAATTTGTGCTCCCAAT 58.755 36.000 0.00 0.00 0.00 3.16
2942 3062 6.150976 TGTTACTCTAATTTGTGCTCCCAATG 59.849 38.462 0.00 0.00 0.00 2.82
2982 3102 1.134818 GCCATCACACACCGATCACTA 60.135 52.381 0.00 0.00 0.00 2.74
3013 3134 7.114811 GCGTGAAAATGAACAACTCACATATTT 59.885 33.333 11.69 0.00 36.69 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.590821 ACAAAGGTGAAAGAGCATGCT 58.409 42.857 22.92 22.92 0.00 3.79
30 31 5.072600 TGGTGAACCTCTATACAACCAAGTT 59.927 40.000 0.37 0.00 36.82 2.66
48 49 3.786368 TGACATGACAAGGATGGTGAA 57.214 42.857 0.00 0.00 0.00 3.18
76 77 3.118149 AGCATGTTGGCTAGATCATCACA 60.118 43.478 0.00 0.00 43.70 3.58
197 209 3.173151 TCTTGAATGCCCTGACACTAGA 58.827 45.455 0.00 0.00 0.00 2.43
212 224 8.902540 AGCATACGGTTAATATCATTCTTGAA 57.097 30.769 0.00 0.00 34.96 2.69
356 383 4.279671 ACCATCATCTATCAACTCGAGACC 59.720 45.833 21.68 0.00 0.00 3.85
357 384 5.446143 ACCATCATCTATCAACTCGAGAC 57.554 43.478 21.68 0.00 0.00 3.36
365 392 4.146564 CCATGGCAACCATCATCTATCAA 58.853 43.478 0.00 0.00 43.15 2.57
370 397 0.928505 TCCCATGGCAACCATCATCT 59.071 50.000 6.09 0.00 43.15 2.90
375 402 1.686800 GGCTTCCCATGGCAACCAT 60.687 57.895 6.09 0.00 46.37 3.55
397 424 1.807142 GCTAAGAAAAAGCAGAGCGGT 59.193 47.619 0.00 0.00 39.83 5.68
434 461 6.905776 CCTCCTCATGTTCTCCCCTATATATT 59.094 42.308 0.00 0.00 0.00 1.28
447 478 4.836825 TCACTCATTTCCTCCTCATGTTC 58.163 43.478 0.00 0.00 0.00 3.18
618 658 4.574599 GCAGGGAGCGATTTTATCATTT 57.425 40.909 0.00 0.00 0.00 2.32
655 695 2.109425 GGCAACTTCCGAGTTACCAT 57.891 50.000 4.14 0.00 45.16 3.55
656 696 3.618171 GGCAACTTCCGAGTTACCA 57.382 52.632 4.14 0.00 45.16 3.25
658 698 3.974871 TTTTGGCAACTTCCGAGTTAC 57.025 42.857 0.00 0.00 44.14 2.50
659 699 5.067936 TGAAATTTTGGCAACTTCCGAGTTA 59.932 36.000 0.00 0.00 44.14 2.24
660 700 4.142049 TGAAATTTTGGCAACTTCCGAGTT 60.142 37.500 0.00 0.00 46.85 3.01
711 751 6.700081 CCCAATCATTTGCATCATTTACTCAG 59.300 38.462 0.00 0.00 0.00 3.35
787 830 3.499737 GCAGCCGTGATGGGAACG 61.500 66.667 0.00 0.00 40.70 3.95
788 831 2.359850 TGCAGCCGTGATGGGAAC 60.360 61.111 0.00 0.00 38.63 3.62
789 832 2.046023 CTGCAGCCGTGATGGGAA 60.046 61.111 0.00 0.00 38.63 3.97
793 838 1.226686 GATAGCCTGCAGCCGTGATG 61.227 60.000 8.66 0.00 45.47 3.07
801 846 7.003482 TGATCTATAGATAGGATAGCCTGCAG 58.997 42.308 15.31 6.78 46.45 4.41
802 847 6.915786 TGATCTATAGATAGGATAGCCTGCA 58.084 40.000 15.31 2.19 46.45 4.41
831 880 1.136141 GCATGCAGATTCTTATCGCCG 60.136 52.381 14.21 0.00 35.85 6.46
896 945 9.771140 TTATAGGTAGGGAAGGAAGATAGAATC 57.229 37.037 0.00 0.00 0.00 2.52
902 951 5.850583 GGGTTTATAGGTAGGGAAGGAAGAT 59.149 44.000 0.00 0.00 0.00 2.40
917 969 5.220970 CGTGTATTGCTTTGGGGGTTTATAG 60.221 44.000 0.00 0.00 0.00 1.31
975 1032 0.106918 TGCCCCTGTGTTTTCTTCGT 60.107 50.000 0.00 0.00 0.00 3.85
976 1033 1.028905 TTGCCCCTGTGTTTTCTTCG 58.971 50.000 0.00 0.00 0.00 3.79
977 1034 3.194861 GTTTTGCCCCTGTGTTTTCTTC 58.805 45.455 0.00 0.00 0.00 2.87
978 1035 2.569404 TGTTTTGCCCCTGTGTTTTCTT 59.431 40.909 0.00 0.00 0.00 2.52
1266 1324 1.657751 CGCACTCCTCGGACATGAGA 61.658 60.000 0.00 0.00 38.28 3.27
1305 1363 2.681064 CCCGACAGAACCCCGGTA 60.681 66.667 0.00 0.00 41.53 4.02
1422 1480 1.688811 CAGGTTCCCCGGATGGAAA 59.311 57.895 13.13 0.00 45.67 3.13
1572 1630 0.104934 AGGGGTCAGACTTGTCCTGT 60.105 55.000 0.00 0.00 33.61 4.00
1914 1984 3.630013 TTGCTCGGGCTCTGCACT 61.630 61.111 9.62 0.00 39.59 4.40
1919 1989 1.409427 GTACATAGTTGCTCGGGCTCT 59.591 52.381 9.62 9.89 39.59 4.09
1930 2000 4.819105 TTGGCACTAGCAGTACATAGTT 57.181 40.909 0.00 0.00 44.61 2.24
1933 2003 4.693283 GTGATTGGCACTAGCAGTACATA 58.307 43.478 0.00 0.00 44.27 2.29
1934 2004 3.535561 GTGATTGGCACTAGCAGTACAT 58.464 45.455 0.00 0.00 44.27 2.29
1935 2005 2.972625 GTGATTGGCACTAGCAGTACA 58.027 47.619 0.00 0.00 44.27 2.90
1946 2016 6.917477 GCGAGAAATAATAAATGTGATTGGCA 59.083 34.615 0.00 0.00 0.00 4.92
1947 2017 6.917477 TGCGAGAAATAATAAATGTGATTGGC 59.083 34.615 0.00 0.00 0.00 4.52
1959 2029 9.541143 TCAACTGTCAATATGCGAGAAATAATA 57.459 29.630 0.00 0.00 0.00 0.98
1960 2030 8.338259 GTCAACTGTCAATATGCGAGAAATAAT 58.662 33.333 0.00 0.00 0.00 1.28
1961 2031 7.333174 TGTCAACTGTCAATATGCGAGAAATAA 59.667 33.333 0.00 0.00 0.00 1.40
1962 2032 6.816140 TGTCAACTGTCAATATGCGAGAAATA 59.184 34.615 0.00 0.00 0.00 1.40
1963 2033 5.643348 TGTCAACTGTCAATATGCGAGAAAT 59.357 36.000 0.00 0.00 0.00 2.17
1964 2034 4.994217 TGTCAACTGTCAATATGCGAGAAA 59.006 37.500 0.00 0.00 0.00 2.52
1965 2035 4.565022 TGTCAACTGTCAATATGCGAGAA 58.435 39.130 0.00 0.00 0.00 2.87
1966 2036 4.176271 CTGTCAACTGTCAATATGCGAGA 58.824 43.478 0.00 0.00 0.00 4.04
1967 2037 3.308053 CCTGTCAACTGTCAATATGCGAG 59.692 47.826 0.00 0.00 0.00 5.03
1968 2038 3.261580 CCTGTCAACTGTCAATATGCGA 58.738 45.455 0.00 0.00 0.00 5.10
1969 2039 2.352651 CCCTGTCAACTGTCAATATGCG 59.647 50.000 0.00 0.00 0.00 4.73
1970 2040 3.609853 TCCCTGTCAACTGTCAATATGC 58.390 45.455 0.00 0.00 0.00 3.14
1971 2041 5.994054 CCTATCCCTGTCAACTGTCAATATG 59.006 44.000 0.00 0.00 0.00 1.78
1972 2042 5.905331 TCCTATCCCTGTCAACTGTCAATAT 59.095 40.000 0.00 0.00 0.00 1.28
1973 2043 5.128827 GTCCTATCCCTGTCAACTGTCAATA 59.871 44.000 0.00 0.00 0.00 1.90
1974 2044 4.080863 GTCCTATCCCTGTCAACTGTCAAT 60.081 45.833 0.00 0.00 0.00 2.57
1975 2045 3.260884 GTCCTATCCCTGTCAACTGTCAA 59.739 47.826 0.00 0.00 0.00 3.18
1976 2046 2.832129 GTCCTATCCCTGTCAACTGTCA 59.168 50.000 0.00 0.00 0.00 3.58
1977 2047 2.168728 GGTCCTATCCCTGTCAACTGTC 59.831 54.545 0.00 0.00 0.00 3.51
1978 2048 2.188817 GGTCCTATCCCTGTCAACTGT 58.811 52.381 0.00 0.00 0.00 3.55
1979 2049 2.432510 GAGGTCCTATCCCTGTCAACTG 59.567 54.545 0.00 0.00 30.60 3.16
1980 2050 2.753247 GAGGTCCTATCCCTGTCAACT 58.247 52.381 0.00 0.00 30.60 3.16
1981 2051 1.409427 CGAGGTCCTATCCCTGTCAAC 59.591 57.143 0.00 0.00 30.60 3.18
1982 2052 1.776662 CGAGGTCCTATCCCTGTCAA 58.223 55.000 0.00 0.00 30.60 3.18
1983 2053 0.755698 GCGAGGTCCTATCCCTGTCA 60.756 60.000 0.00 0.00 30.60 3.58
1984 2054 0.755698 TGCGAGGTCCTATCCCTGTC 60.756 60.000 0.00 0.00 30.60 3.51
1985 2055 0.757188 CTGCGAGGTCCTATCCCTGT 60.757 60.000 0.00 0.00 30.60 4.00
1986 2056 2.045280 CTGCGAGGTCCTATCCCTG 58.955 63.158 0.00 0.00 30.60 4.45
1987 2057 1.834822 GCTGCGAGGTCCTATCCCT 60.835 63.158 0.00 0.00 34.11 4.20
1988 2058 1.403687 AAGCTGCGAGGTCCTATCCC 61.404 60.000 0.00 0.00 0.00 3.85
1989 2059 0.249657 CAAGCTGCGAGGTCCTATCC 60.250 60.000 0.00 0.00 0.00 2.59
1990 2060 0.878086 GCAAGCTGCGAGGTCCTATC 60.878 60.000 0.00 0.00 31.71 2.08
1991 2061 1.144936 GCAAGCTGCGAGGTCCTAT 59.855 57.895 0.00 0.00 31.71 2.57
1992 2062 2.579201 GCAAGCTGCGAGGTCCTA 59.421 61.111 0.00 0.00 31.71 2.94
2001 2071 2.694760 GGCCACTAGTGCAAGCTGC 61.695 63.158 17.86 13.46 45.29 5.25
2002 2072 0.607489 AAGGCCACTAGTGCAAGCTG 60.607 55.000 17.86 3.80 0.00 4.24
2003 2073 0.111253 AAAGGCCACTAGTGCAAGCT 59.889 50.000 17.86 3.56 0.00 3.74
2004 2074 0.242017 CAAAGGCCACTAGTGCAAGC 59.758 55.000 17.86 14.89 0.00 4.01
2005 2075 0.242017 GCAAAGGCCACTAGTGCAAG 59.758 55.000 17.86 5.31 37.64 4.01
2006 2076 0.178992 AGCAAAGGCCACTAGTGCAA 60.179 50.000 17.86 0.00 42.56 4.08
2007 2077 0.890542 CAGCAAAGGCCACTAGTGCA 60.891 55.000 17.86 0.00 42.56 4.57
2008 2078 1.878775 CAGCAAAGGCCACTAGTGC 59.121 57.895 17.86 12.43 42.56 4.40
2009 2079 0.607489 AGCAGCAAAGGCCACTAGTG 60.607 55.000 16.34 16.34 42.56 2.74
2010 2080 0.984230 TAGCAGCAAAGGCCACTAGT 59.016 50.000 5.01 0.00 42.56 2.57
2011 2081 2.338577 ATAGCAGCAAAGGCCACTAG 57.661 50.000 5.01 0.00 42.56 2.57
2012 2082 2.806945 AATAGCAGCAAAGGCCACTA 57.193 45.000 5.01 0.00 42.56 2.74
2013 2083 1.928868 AAATAGCAGCAAAGGCCACT 58.071 45.000 5.01 0.00 42.56 4.00
2014 2084 2.738314 CAAAAATAGCAGCAAAGGCCAC 59.262 45.455 5.01 0.00 42.56 5.01
2015 2085 2.632028 TCAAAAATAGCAGCAAAGGCCA 59.368 40.909 5.01 0.00 42.56 5.36
2016 2086 2.995939 GTCAAAAATAGCAGCAAAGGCC 59.004 45.455 0.00 0.00 42.56 5.19
2017 2087 2.663119 CGTCAAAAATAGCAGCAAAGGC 59.337 45.455 0.00 0.00 41.61 4.35
2018 2088 3.057596 TCCGTCAAAAATAGCAGCAAAGG 60.058 43.478 0.00 0.00 0.00 3.11
2019 2089 4.159377 TCCGTCAAAAATAGCAGCAAAG 57.841 40.909 0.00 0.00 0.00 2.77
2020 2090 4.576216 TTCCGTCAAAAATAGCAGCAAA 57.424 36.364 0.00 0.00 0.00 3.68
2021 2091 4.576216 TTTCCGTCAAAAATAGCAGCAA 57.424 36.364 0.00 0.00 0.00 3.91
2022 2092 4.782019 ATTTCCGTCAAAAATAGCAGCA 57.218 36.364 0.00 0.00 0.00 4.41
2023 2093 6.551736 TCTAATTTCCGTCAAAAATAGCAGC 58.448 36.000 0.00 0.00 0.00 5.25
2031 2101 9.763465 GTCGAAAATATCTAATTTCCGTCAAAA 57.237 29.630 0.00 0.00 33.07 2.44
2032 2102 8.937884 TGTCGAAAATATCTAATTTCCGTCAAA 58.062 29.630 0.00 0.00 33.07 2.69
2033 2103 8.481974 TGTCGAAAATATCTAATTTCCGTCAA 57.518 30.769 0.00 0.00 33.07 3.18
2034 2104 8.481974 TTGTCGAAAATATCTAATTTCCGTCA 57.518 30.769 0.00 0.00 33.07 4.35
2035 2105 9.763465 TTTTGTCGAAAATATCTAATTTCCGTC 57.237 29.630 0.00 0.00 33.07 4.79
2059 2129 5.512060 GGAACGGAGGGAGTACTTACTTTTT 60.512 44.000 0.00 0.00 36.50 1.94
2060 2130 4.020751 GGAACGGAGGGAGTACTTACTTTT 60.021 45.833 0.00 0.00 36.50 2.27
2061 2131 3.513119 GGAACGGAGGGAGTACTTACTTT 59.487 47.826 0.00 0.00 36.50 2.66
2062 2132 3.095332 GGAACGGAGGGAGTACTTACTT 58.905 50.000 0.00 0.00 36.50 2.24
2063 2133 2.311243 AGGAACGGAGGGAGTACTTACT 59.689 50.000 0.00 0.00 39.71 2.24
2064 2134 2.732763 AGGAACGGAGGGAGTACTTAC 58.267 52.381 0.00 0.00 0.00 2.34
2065 2135 4.591321 TTAGGAACGGAGGGAGTACTTA 57.409 45.455 0.00 0.00 0.00 2.24
2066 2136 3.463048 TTAGGAACGGAGGGAGTACTT 57.537 47.619 0.00 0.00 0.00 2.24
2067 2137 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
2068 2138 4.646492 TGTATTTAGGAACGGAGGGAGTAC 59.354 45.833 0.00 0.00 0.00 2.73
2069 2139 4.870636 TGTATTTAGGAACGGAGGGAGTA 58.129 43.478 0.00 0.00 0.00 2.59
2070 2140 3.716431 TGTATTTAGGAACGGAGGGAGT 58.284 45.455 0.00 0.00 0.00 3.85
2071 2141 4.161754 ACTTGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
2072 2142 4.098894 ACTTGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2073 2143 4.161754 AGACTTGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2074 2144 5.340439 AGACTTGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2075 2145 6.649557 ACAAAGACTTGTATTTAGGAACGGAG 59.350 38.462 0.00 0.00 44.14 4.63
2076 2146 6.527423 ACAAAGACTTGTATTTAGGAACGGA 58.473 36.000 0.00 0.00 44.14 4.69
2077 2147 6.796705 ACAAAGACTTGTATTTAGGAACGG 57.203 37.500 0.00 0.00 44.14 4.44
2078 2148 9.807386 CTTTACAAAGACTTGTATTTAGGAACG 57.193 33.333 0.00 0.00 45.29 3.95
2103 2173 9.823647 CTCCATGTGTAGTTTATAGTGAAATCT 57.176 33.333 0.00 0.00 0.00 2.40
2104 2174 8.552034 GCTCCATGTGTAGTTTATAGTGAAATC 58.448 37.037 0.00 0.00 0.00 2.17
2105 2175 8.046708 TGCTCCATGTGTAGTTTATAGTGAAAT 58.953 33.333 0.00 0.00 0.00 2.17
2106 2176 7.390823 TGCTCCATGTGTAGTTTATAGTGAAA 58.609 34.615 0.00 0.00 0.00 2.69
2107 2177 6.941857 TGCTCCATGTGTAGTTTATAGTGAA 58.058 36.000 0.00 0.00 0.00 3.18
2108 2178 6.538945 TGCTCCATGTGTAGTTTATAGTGA 57.461 37.500 0.00 0.00 0.00 3.41
2109 2179 7.609760 TTTGCTCCATGTGTAGTTTATAGTG 57.390 36.000 0.00 0.00 0.00 2.74
2110 2180 8.677300 CATTTTGCTCCATGTGTAGTTTATAGT 58.323 33.333 0.00 0.00 0.00 2.12
2111 2181 8.892723 TCATTTTGCTCCATGTGTAGTTTATAG 58.107 33.333 0.00 0.00 0.00 1.31
2112 2182 8.800370 TCATTTTGCTCCATGTGTAGTTTATA 57.200 30.769 0.00 0.00 0.00 0.98
2113 2183 7.394359 ACTCATTTTGCTCCATGTGTAGTTTAT 59.606 33.333 0.00 0.00 0.00 1.40
2114 2184 6.714810 ACTCATTTTGCTCCATGTGTAGTTTA 59.285 34.615 0.00 0.00 0.00 2.01
2115 2185 5.536161 ACTCATTTTGCTCCATGTGTAGTTT 59.464 36.000 0.00 0.00 0.00 2.66
2116 2186 5.048504 CACTCATTTTGCTCCATGTGTAGTT 60.049 40.000 0.00 0.00 0.00 2.24
2117 2187 4.456911 CACTCATTTTGCTCCATGTGTAGT 59.543 41.667 0.00 0.00 0.00 2.73
2118 2188 4.696877 TCACTCATTTTGCTCCATGTGTAG 59.303 41.667 0.00 0.00 0.00 2.74
2119 2189 4.650734 TCACTCATTTTGCTCCATGTGTA 58.349 39.130 0.00 0.00 0.00 2.90
2120 2190 3.489355 TCACTCATTTTGCTCCATGTGT 58.511 40.909 0.00 0.00 0.00 3.72
2121 2191 4.508461 TTCACTCATTTTGCTCCATGTG 57.492 40.909 0.00 0.00 0.00 3.21
2122 2192 5.014858 AGATTCACTCATTTTGCTCCATGT 58.985 37.500 0.00 0.00 0.00 3.21
2123 2193 5.578005 AGATTCACTCATTTTGCTCCATG 57.422 39.130 0.00 0.00 0.00 3.66
2124 2194 8.216423 AGTATAGATTCACTCATTTTGCTCCAT 58.784 33.333 0.00 0.00 0.00 3.41
2125 2195 7.568349 AGTATAGATTCACTCATTTTGCTCCA 58.432 34.615 0.00 0.00 0.00 3.86
2126 2196 7.930865 AGAGTATAGATTCACTCATTTTGCTCC 59.069 37.037 4.70 0.00 42.99 4.70
2127 2197 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
2174 2244 9.646427 GGAGAGATTCCACTATAAATCACATAC 57.354 37.037 0.00 0.00 46.01 2.39
2196 2266 9.595823 CCGTTCTTAAATATAAGTCTTTGGAGA 57.404 33.333 0.00 0.00 39.65 3.71
2197 2267 9.595823 TCCGTTCTTAAATATAAGTCTTTGGAG 57.404 33.333 0.00 0.00 39.65 3.86
2198 2268 9.595823 CTCCGTTCTTAAATATAAGTCTTTGGA 57.404 33.333 0.00 0.00 39.65 3.53
2199 2269 9.595823 TCTCCGTTCTTAAATATAAGTCTTTGG 57.404 33.333 0.00 0.00 39.65 3.28
2215 2285 9.720769 TCTATTGAAACTATTTTCTCCGTTCTT 57.279 29.630 7.05 0.00 41.64 2.52
2216 2286 9.892130 ATCTATTGAAACTATTTTCTCCGTTCT 57.108 29.630 7.05 0.00 41.64 3.01
2227 2297 9.764363 TCAGCGATGTAATCTATTGAAACTATT 57.236 29.630 0.00 0.00 42.58 1.73
2228 2298 9.935241 ATCAGCGATGTAATCTATTGAAACTAT 57.065 29.630 0.00 0.00 42.58 2.12
2229 2299 9.196552 CATCAGCGATGTAATCTATTGAAACTA 57.803 33.333 0.00 0.00 42.58 2.24
2230 2300 7.307632 GCATCAGCGATGTAATCTATTGAAACT 60.308 37.037 16.26 0.00 42.58 2.66
2231 2301 6.794158 GCATCAGCGATGTAATCTATTGAAAC 59.206 38.462 16.26 0.00 42.58 2.78
2232 2302 6.073058 GGCATCAGCGATGTAATCTATTGAAA 60.073 38.462 16.26 0.00 42.58 2.69
2233 2303 5.409520 GGCATCAGCGATGTAATCTATTGAA 59.590 40.000 16.26 0.00 42.58 2.69
2234 2304 4.931601 GGCATCAGCGATGTAATCTATTGA 59.068 41.667 16.26 0.00 42.58 2.57
2235 2305 4.934001 AGGCATCAGCGATGTAATCTATTG 59.066 41.667 16.26 0.00 42.58 1.90
2236 2306 4.934001 CAGGCATCAGCGATGTAATCTATT 59.066 41.667 16.26 0.00 42.58 1.73
2237 2307 4.221482 TCAGGCATCAGCGATGTAATCTAT 59.779 41.667 16.26 0.00 42.58 1.98
2238 2308 3.573967 TCAGGCATCAGCGATGTAATCTA 59.426 43.478 16.26 0.00 42.58 1.98
2239 2309 2.366590 TCAGGCATCAGCGATGTAATCT 59.633 45.455 16.26 8.89 42.58 2.40
2240 2310 2.735663 CTCAGGCATCAGCGATGTAATC 59.264 50.000 16.26 7.38 41.60 1.75
2241 2311 2.103771 ACTCAGGCATCAGCGATGTAAT 59.896 45.455 16.26 0.00 41.60 1.89
2242 2312 1.482182 ACTCAGGCATCAGCGATGTAA 59.518 47.619 16.26 0.00 41.60 2.41
2243 2313 1.114627 ACTCAGGCATCAGCGATGTA 58.885 50.000 16.26 0.00 41.60 2.29
2244 2314 1.114627 TACTCAGGCATCAGCGATGT 58.885 50.000 16.26 2.83 41.60 3.06
2245 2315 1.202452 TGTACTCAGGCATCAGCGATG 60.202 52.381 12.35 12.35 43.41 3.84
2246 2316 1.114627 TGTACTCAGGCATCAGCGAT 58.885 50.000 0.00 0.00 43.41 4.58
2247 2317 1.114627 ATGTACTCAGGCATCAGCGA 58.885 50.000 0.00 0.00 43.41 4.93
2248 2318 1.215244 CATGTACTCAGGCATCAGCG 58.785 55.000 0.00 0.00 43.41 5.18
2256 2326 1.938577 GCTGTGATGCATGTACTCAGG 59.061 52.381 2.46 0.00 0.00 3.86
2257 2327 1.938577 GGCTGTGATGCATGTACTCAG 59.061 52.381 2.46 7.73 34.04 3.35
2258 2328 1.556451 AGGCTGTGATGCATGTACTCA 59.444 47.619 2.46 0.00 34.04 3.41
2259 2329 2.322355 AGGCTGTGATGCATGTACTC 57.678 50.000 2.46 0.00 34.04 2.59
2260 2330 2.795231 AAGGCTGTGATGCATGTACT 57.205 45.000 2.46 0.00 34.04 2.73
2261 2331 3.855689 AAAAGGCTGTGATGCATGTAC 57.144 42.857 2.46 3.57 34.04 2.90
2262 2332 5.887598 AGATAAAAAGGCTGTGATGCATGTA 59.112 36.000 2.46 0.00 34.04 2.29
2263 2333 4.708421 AGATAAAAAGGCTGTGATGCATGT 59.292 37.500 2.46 0.00 34.04 3.21
2264 2334 5.258456 AGATAAAAAGGCTGTGATGCATG 57.742 39.130 2.46 0.00 34.04 4.06
2265 2335 5.927281 AAGATAAAAAGGCTGTGATGCAT 57.073 34.783 0.00 0.00 34.04 3.96
2266 2336 5.726980 AAAGATAAAAAGGCTGTGATGCA 57.273 34.783 0.00 0.00 34.04 3.96
2267 2337 9.971922 AATATAAAGATAAAAAGGCTGTGATGC 57.028 29.630 0.00 0.00 0.00 3.91
2291 2361 7.557719 GCATGTAATCAGGGGTGCTATATAAAT 59.442 37.037 0.00 0.00 0.00 1.40
2292 2362 6.884295 GCATGTAATCAGGGGTGCTATATAAA 59.116 38.462 0.00 0.00 0.00 1.40
2293 2363 6.012945 TGCATGTAATCAGGGGTGCTATATAA 60.013 38.462 0.00 0.00 33.95 0.98
2294 2364 5.487131 TGCATGTAATCAGGGGTGCTATATA 59.513 40.000 0.00 0.00 33.95 0.86
2295 2365 4.289410 TGCATGTAATCAGGGGTGCTATAT 59.711 41.667 0.00 0.00 33.95 0.86
2296 2366 3.650461 TGCATGTAATCAGGGGTGCTATA 59.350 43.478 0.00 0.00 33.95 1.31
2297 2367 2.442878 TGCATGTAATCAGGGGTGCTAT 59.557 45.455 0.00 0.00 33.95 2.97
2298 2368 1.843206 TGCATGTAATCAGGGGTGCTA 59.157 47.619 0.00 0.00 33.95 3.49
2299 2369 0.625316 TGCATGTAATCAGGGGTGCT 59.375 50.000 0.00 0.00 33.95 4.40
2300 2370 1.338973 CATGCATGTAATCAGGGGTGC 59.661 52.381 18.91 0.00 0.00 5.01
2301 2371 2.359848 CACATGCATGTAATCAGGGGTG 59.640 50.000 30.92 11.69 39.39 4.61
2302 2372 2.658285 CACATGCATGTAATCAGGGGT 58.342 47.619 30.92 2.47 39.39 4.95
2303 2373 1.338973 GCACATGCATGTAATCAGGGG 59.661 52.381 30.92 17.16 39.39 4.79
2304 2374 2.034179 CAGCACATGCATGTAATCAGGG 59.966 50.000 30.92 17.87 45.16 4.45
2305 2375 2.686405 ACAGCACATGCATGTAATCAGG 59.314 45.455 30.92 18.56 45.16 3.86
2306 2376 4.102649 CAACAGCACATGCATGTAATCAG 58.897 43.478 30.92 19.27 45.16 2.90
2307 2377 3.506844 ACAACAGCACATGCATGTAATCA 59.493 39.130 30.92 0.00 45.16 2.57
2308 2378 4.100707 ACAACAGCACATGCATGTAATC 57.899 40.909 30.92 21.44 45.16 1.75
2309 2379 4.524316 AACAACAGCACATGCATGTAAT 57.476 36.364 30.92 19.50 45.16 1.89
2310 2380 4.615682 GCTAACAACAGCACATGCATGTAA 60.616 41.667 30.92 8.09 45.16 2.41
2311 2381 3.119884 GCTAACAACAGCACATGCATGTA 60.120 43.478 30.92 12.08 45.16 2.29
2312 2382 2.352030 GCTAACAACAGCACATGCATGT 60.352 45.455 26.61 26.61 45.16 3.21
2313 2383 2.256174 GCTAACAACAGCACATGCATG 58.744 47.619 25.09 25.09 45.16 4.06
2314 2384 1.203052 GGCTAACAACAGCACATGCAT 59.797 47.619 6.64 0.00 43.67 3.96
2315 2385 0.597568 GGCTAACAACAGCACATGCA 59.402 50.000 6.64 0.00 43.67 3.96
2316 2386 0.883833 AGGCTAACAACAGCACATGC 59.116 50.000 0.00 0.00 43.67 4.06
2317 2387 3.940852 TGATAGGCTAACAACAGCACATG 59.059 43.478 1.55 0.00 43.67 3.21
2318 2388 4.220693 TGATAGGCTAACAACAGCACAT 57.779 40.909 1.55 0.00 43.67 3.21
2319 2389 3.694043 TGATAGGCTAACAACAGCACA 57.306 42.857 1.55 0.00 43.67 4.57
2320 2390 4.003648 ACTTGATAGGCTAACAACAGCAC 58.996 43.478 12.58 0.00 43.67 4.40
2321 2391 4.286297 ACTTGATAGGCTAACAACAGCA 57.714 40.909 12.58 0.00 43.67 4.41
2322 2392 6.371825 AGTTTACTTGATAGGCTAACAACAGC 59.628 38.462 12.58 3.59 41.02 4.40
2323 2393 7.602644 TGAGTTTACTTGATAGGCTAACAACAG 59.397 37.037 12.58 7.40 0.00 3.16
2324 2394 7.386848 GTGAGTTTACTTGATAGGCTAACAACA 59.613 37.037 12.58 5.60 0.00 3.33
2325 2395 7.411588 CGTGAGTTTACTTGATAGGCTAACAAC 60.412 40.741 12.58 4.60 0.00 3.32
2326 2396 6.588756 CGTGAGTTTACTTGATAGGCTAACAA 59.411 38.462 15.30 15.30 0.00 2.83
2327 2397 6.097356 CGTGAGTTTACTTGATAGGCTAACA 58.903 40.000 0.00 0.00 0.00 2.41
2328 2398 5.005490 GCGTGAGTTTACTTGATAGGCTAAC 59.995 44.000 0.00 0.00 0.00 2.34
2329 2399 5.107133 GCGTGAGTTTACTTGATAGGCTAA 58.893 41.667 0.00 0.00 0.00 3.09
2330 2400 4.441079 GGCGTGAGTTTACTTGATAGGCTA 60.441 45.833 0.00 0.00 0.00 3.93
2331 2401 3.522553 GCGTGAGTTTACTTGATAGGCT 58.477 45.455 0.00 0.00 0.00 4.58
2332 2402 2.608090 GGCGTGAGTTTACTTGATAGGC 59.392 50.000 0.00 0.00 0.00 3.93
2333 2403 4.113354 GAGGCGTGAGTTTACTTGATAGG 58.887 47.826 0.00 0.00 0.00 2.57
2334 2404 4.563184 GTGAGGCGTGAGTTTACTTGATAG 59.437 45.833 0.00 0.00 0.00 2.08
2335 2405 4.021807 TGTGAGGCGTGAGTTTACTTGATA 60.022 41.667 0.00 0.00 0.00 2.15
2336 2406 3.244078 TGTGAGGCGTGAGTTTACTTGAT 60.244 43.478 0.00 0.00 0.00 2.57
2337 2407 2.101750 TGTGAGGCGTGAGTTTACTTGA 59.898 45.455 0.00 0.00 0.00 3.02
2338 2408 2.221055 GTGTGAGGCGTGAGTTTACTTG 59.779 50.000 0.00 0.00 0.00 3.16
2339 2409 2.480845 GTGTGAGGCGTGAGTTTACTT 58.519 47.619 0.00 0.00 0.00 2.24
2340 2410 1.270147 GGTGTGAGGCGTGAGTTTACT 60.270 52.381 0.00 0.00 0.00 2.24
2341 2411 1.145803 GGTGTGAGGCGTGAGTTTAC 58.854 55.000 0.00 0.00 0.00 2.01
2342 2412 0.753867 TGGTGTGAGGCGTGAGTTTA 59.246 50.000 0.00 0.00 0.00 2.01
2343 2413 0.108585 ATGGTGTGAGGCGTGAGTTT 59.891 50.000 0.00 0.00 0.00 2.66
2344 2414 0.320771 GATGGTGTGAGGCGTGAGTT 60.321 55.000 0.00 0.00 0.00 3.01
2345 2415 1.293498 GATGGTGTGAGGCGTGAGT 59.707 57.895 0.00 0.00 0.00 3.41
2346 2416 1.016130 GTGATGGTGTGAGGCGTGAG 61.016 60.000 0.00 0.00 0.00 3.51
2347 2417 1.005037 GTGATGGTGTGAGGCGTGA 60.005 57.895 0.00 0.00 0.00 4.35
2348 2418 1.004560 AGTGATGGTGTGAGGCGTG 60.005 57.895 0.00 0.00 0.00 5.34
2349 2419 1.293498 GAGTGATGGTGTGAGGCGT 59.707 57.895 0.00 0.00 0.00 5.68
2350 2420 1.448540 GGAGTGATGGTGTGAGGCG 60.449 63.158 0.00 0.00 0.00 5.52
2351 2421 0.392193 CAGGAGTGATGGTGTGAGGC 60.392 60.000 0.00 0.00 0.00 4.70
2352 2422 0.251354 CCAGGAGTGATGGTGTGAGG 59.749 60.000 0.00 0.00 32.85 3.86
2353 2423 0.251354 CCCAGGAGTGATGGTGTGAG 59.749 60.000 0.00 0.00 35.96 3.51
2354 2424 0.178906 TCCCAGGAGTGATGGTGTGA 60.179 55.000 0.00 0.00 35.96 3.58
2355 2425 0.914644 ATCCCAGGAGTGATGGTGTG 59.085 55.000 0.00 0.00 35.96 3.82
2356 2426 1.207791 GATCCCAGGAGTGATGGTGT 58.792 55.000 0.00 0.00 35.96 4.16
2357 2427 1.206878 TGATCCCAGGAGTGATGGTG 58.793 55.000 0.00 0.00 35.96 4.17
2358 2428 1.773052 CATGATCCCAGGAGTGATGGT 59.227 52.381 0.00 0.00 35.96 3.55
2359 2429 1.773052 ACATGATCCCAGGAGTGATGG 59.227 52.381 0.00 0.00 37.58 3.51
2360 2430 3.572632 AACATGATCCCAGGAGTGATG 57.427 47.619 0.00 0.00 0.00 3.07
2361 2431 5.715439 TTTAACATGATCCCAGGAGTGAT 57.285 39.130 0.00 0.00 0.00 3.06
2362 2432 5.512942 TTTTAACATGATCCCAGGAGTGA 57.487 39.130 0.00 0.00 0.00 3.41
2363 2433 7.880160 TTATTTTAACATGATCCCAGGAGTG 57.120 36.000 0.00 0.00 0.00 3.51
2364 2434 9.136323 GATTTATTTTAACATGATCCCAGGAGT 57.864 33.333 0.00 0.00 0.00 3.85
2365 2435 9.359653 AGATTTATTTTAACATGATCCCAGGAG 57.640 33.333 0.00 0.00 0.00 3.69
2366 2436 9.135189 CAGATTTATTTTAACATGATCCCAGGA 57.865 33.333 0.00 0.00 0.00 3.86
2367 2437 9.135189 TCAGATTTATTTTAACATGATCCCAGG 57.865 33.333 0.00 0.00 0.00 4.45
2369 2439 9.135189 CCTCAGATTTATTTTAACATGATCCCA 57.865 33.333 0.00 0.00 0.00 4.37
2370 2440 8.084684 GCCTCAGATTTATTTTAACATGATCCC 58.915 37.037 0.00 0.00 0.00 3.85
2371 2441 8.632679 TGCCTCAGATTTATTTTAACATGATCC 58.367 33.333 0.00 0.00 0.00 3.36
2415 2485 3.187227 GTGCTCGTGTGATTGTTTGATCT 59.813 43.478 0.00 0.00 0.00 2.75
2418 2488 1.260297 CGTGCTCGTGTGATTGTTTGA 59.740 47.619 0.00 0.00 0.00 2.69
2483 2555 3.136626 AGAAACACATATAGTCAGGCCCC 59.863 47.826 0.00 0.00 0.00 5.80
2487 2559 4.408921 TGGGGAGAAACACATATAGTCAGG 59.591 45.833 0.00 0.00 0.00 3.86
2497 2570 1.774254 AGTGTCATGGGGAGAAACACA 59.226 47.619 12.45 0.00 42.01 3.72
2501 2574 1.067295 AGCAGTGTCATGGGGAGAAA 58.933 50.000 0.00 0.00 0.00 2.52
2503 2576 1.195115 GTAGCAGTGTCATGGGGAGA 58.805 55.000 0.00 0.00 0.00 3.71
2552 2625 2.742372 GAAGACGGCGGCATGTGT 60.742 61.111 18.30 0.00 0.00 3.72
2565 2638 2.203788 ACAGGACGCAGGGGAAGA 60.204 61.111 0.00 0.00 0.00 2.87
2578 2652 4.005650 CCTATGCCAACATATAGCACAGG 58.994 47.826 0.00 0.00 44.14 4.00
2582 2656 6.181206 TGTAACCTATGCCAACATATAGCA 57.819 37.500 0.00 0.00 38.10 3.49
2583 2657 6.036083 CGATGTAACCTATGCCAACATATAGC 59.964 42.308 0.00 0.00 38.10 2.97
2584 2658 7.097192 ACGATGTAACCTATGCCAACATATAG 58.903 38.462 0.00 0.00 38.10 1.31
2586 2660 5.865085 ACGATGTAACCTATGCCAACATAT 58.135 37.500 0.00 0.00 38.10 1.78
2702 2779 3.136009 ACAAGGTAGGTTACAGTTGGC 57.864 47.619 0.00 0.00 31.85 4.52
2762 2845 5.186996 AGTTTGACGCATTGACAAATTCT 57.813 34.783 0.00 0.00 42.54 2.40
2812 2932 1.135139 GAGTAGCAGCGGTTCTCATGA 59.865 52.381 0.00 0.00 30.04 3.07
2855 2975 9.886132 AAGAAAAGAAGAGAGTACAAGTTGTAA 57.114 29.630 17.16 0.00 34.21 2.41
2857 2977 8.041323 TCAAGAAAAGAAGAGAGTACAAGTTGT 58.959 33.333 14.05 14.05 0.00 3.32
2867 2987 4.621991 TCGTGGTCAAGAAAAGAAGAGAG 58.378 43.478 0.00 0.00 0.00 3.20
2870 2990 4.956085 TGATCGTGGTCAAGAAAAGAAGA 58.044 39.130 0.00 0.00 0.00 2.87
2888 3008 6.603095 ACTTAATTTTGCTCGAGTGTTGATC 58.397 36.000 15.13 0.00 0.00 2.92
2889 3009 6.560253 ACTTAATTTTGCTCGAGTGTTGAT 57.440 33.333 15.13 0.00 0.00 2.57
2927 3047 2.173519 CTGGACATTGGGAGCACAAAT 58.826 47.619 0.00 0.00 33.48 2.32
2941 3061 2.430694 CGTTGGATGGATACTCTGGACA 59.569 50.000 0.00 0.00 37.61 4.02
2942 3062 2.803492 GCGTTGGATGGATACTCTGGAC 60.803 54.545 0.00 0.00 37.61 4.02
2982 3102 3.130340 AGTTGTTCATTTTCACGCAGGTT 59.870 39.130 0.00 0.00 0.00 3.50
3013 3134 4.890088 GGTAACTCTTATGTGTGACACCA 58.110 43.478 13.85 1.72 32.73 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.