Multiple sequence alignment - TraesCS3B01G034100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G034100 chr3B 100.000 4117 0 0 1 4117 16212115 16216231 0.000000e+00 7603.0
1 TraesCS3B01G034100 chr3B 93.103 145 9 1 217 360 545071885 545072029 1.160000e-50 211.0
2 TraesCS3B01G034100 chr3A 86.747 3667 226 126 590 4117 25501375 25497830 0.000000e+00 3840.0
3 TraesCS3B01G034100 chr3D 90.273 2714 133 49 1459 4117 11575584 11578221 0.000000e+00 3428.0
4 TraesCS3B01G034100 chr3D 86.266 881 27 30 598 1447 11574729 11575546 0.000000e+00 870.0
5 TraesCS3B01G034100 chr3D 88.018 217 15 8 344 557 11574429 11574637 3.180000e-61 246.0
6 TraesCS3B01G034100 chr1B 86.084 309 22 10 1057 1356 7249760 7249464 3.090000e-81 313.0
7 TraesCS3B01G034100 chr1B 94.776 134 7 0 220 353 102142128 102142261 4.170000e-50 209.0
8 TraesCS3B01G034100 chr1B 92.958 142 7 3 209 348 306097662 306097522 1.940000e-48 204.0
9 TraesCS3B01G034100 chr2A 93.617 141 8 1 207 347 444077716 444077855 4.170000e-50 209.0
10 TraesCS3B01G034100 chr2A 92.361 144 9 2 220 363 51499879 51499738 1.940000e-48 204.0
11 TraesCS3B01G034100 chr2A 92.254 142 9 2 209 348 115451631 115451490 2.510000e-47 200.0
12 TraesCS3B01G034100 chr5A 94.074 135 8 0 219 353 688512219 688512353 5.390000e-49 206.0
13 TraesCS3B01G034100 chr5A 93.985 133 8 0 215 347 426273211 426273343 6.980000e-48 202.0
14 TraesCS3B01G034100 chr2B 93.478 138 9 0 210 347 567903385 567903248 5.390000e-49 206.0
15 TraesCS3B01G034100 chr6D 82.011 189 20 7 1057 1235 282605353 282605537 9.220000e-32 148.0
16 TraesCS3B01G034100 chr6D 88.235 119 5 2 1235 1353 282609097 282609206 2.580000e-27 134.0
17 TraesCS3B01G034100 chr4D 100.000 28 0 0 1800 1827 30272746 30272773 7.000000e-03 52.8
18 TraesCS3B01G034100 chr4D 100.000 28 0 0 1800 1827 480441211 480441184 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G034100 chr3B 16212115 16216231 4116 False 7603.000000 7603 100.000000 1 4117 1 chr3B.!!$F1 4116
1 TraesCS3B01G034100 chr3A 25497830 25501375 3545 True 3840.000000 3840 86.747000 590 4117 1 chr3A.!!$R1 3527
2 TraesCS3B01G034100 chr3D 11574429 11578221 3792 False 1514.666667 3428 88.185667 344 4117 3 chr3D.!!$F1 3773

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
563 618 0.038310 TTTCACCACACCACACCACA 59.962 50.0 0.0 0.0 0.0 4.17 F
1333 1490 0.037303 CAGCCACTGTCCATCACCTT 59.963 55.0 0.0 0.0 0.0 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2042 2246 0.103937 CTCTGGTGAGCTTCCGGATC 59.896 60.0 4.15 0.0 39.3 3.36 R
3158 3383 0.032912 TGCATCACCAAGCCCATCAT 60.033 50.0 0.00 0.0 0.0 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.977405 GCCTCAAGCACACTGTAAAG 57.023 50.000 0.00 0.00 42.97 1.85
23 24 2.222027 GCCTCAAGCACACTGTAAAGT 58.778 47.619 0.00 0.00 42.97 2.66
24 25 2.031682 GCCTCAAGCACACTGTAAAGTG 60.032 50.000 11.74 11.74 44.74 3.16
30 31 0.951558 CACACTGTAAAGTGCCACCC 59.048 55.000 13.26 0.00 43.13 4.61
31 32 0.843984 ACACTGTAAAGTGCCACCCT 59.156 50.000 13.26 0.00 43.13 4.34
32 33 2.051692 ACACTGTAAAGTGCCACCCTA 58.948 47.619 13.26 0.00 43.13 3.53
33 34 2.440253 ACACTGTAAAGTGCCACCCTAA 59.560 45.455 13.26 0.00 43.13 2.69
34 35 3.074412 CACTGTAAAGTGCCACCCTAAG 58.926 50.000 0.00 0.00 32.72 2.18
35 36 2.084546 CTGTAAAGTGCCACCCTAAGC 58.915 52.381 0.00 0.00 0.00 3.09
36 37 1.422024 TGTAAAGTGCCACCCTAAGCA 59.578 47.619 0.00 0.00 36.44 3.91
37 38 2.041081 TGTAAAGTGCCACCCTAAGCAT 59.959 45.455 0.00 0.00 41.86 3.79
38 39 3.264706 TGTAAAGTGCCACCCTAAGCATA 59.735 43.478 0.00 0.00 41.86 3.14
39 40 2.717639 AAGTGCCACCCTAAGCATAG 57.282 50.000 0.00 0.00 41.86 2.23
40 41 0.181350 AGTGCCACCCTAAGCATAGC 59.819 55.000 0.00 0.00 41.86 2.97
41 42 0.107214 GTGCCACCCTAAGCATAGCA 60.107 55.000 0.00 0.00 41.86 3.49
42 43 0.623194 TGCCACCCTAAGCATAGCAA 59.377 50.000 0.00 0.00 33.08 3.91
43 44 1.312815 GCCACCCTAAGCATAGCAAG 58.687 55.000 0.00 0.00 0.00 4.01
44 45 1.408822 GCCACCCTAAGCATAGCAAGT 60.409 52.381 0.00 0.00 0.00 3.16
45 46 2.565841 CCACCCTAAGCATAGCAAGTC 58.434 52.381 0.00 0.00 0.00 3.01
46 47 2.565841 CACCCTAAGCATAGCAAGTCC 58.434 52.381 0.00 0.00 0.00 3.85
47 48 2.092968 CACCCTAAGCATAGCAAGTCCA 60.093 50.000 0.00 0.00 0.00 4.02
48 49 2.092914 ACCCTAAGCATAGCAAGTCCAC 60.093 50.000 0.00 0.00 0.00 4.02
49 50 2.171448 CCCTAAGCATAGCAAGTCCACT 59.829 50.000 0.00 0.00 0.00 4.00
50 51 3.388024 CCCTAAGCATAGCAAGTCCACTA 59.612 47.826 0.00 0.00 0.00 2.74
51 52 4.141711 CCCTAAGCATAGCAAGTCCACTAA 60.142 45.833 0.00 0.00 0.00 2.24
52 53 4.811557 CCTAAGCATAGCAAGTCCACTAAC 59.188 45.833 0.00 0.00 0.00 2.34
53 54 3.981071 AGCATAGCAAGTCCACTAACA 57.019 42.857 0.00 0.00 0.00 2.41
54 55 3.600388 AGCATAGCAAGTCCACTAACAC 58.400 45.455 0.00 0.00 0.00 3.32
55 56 2.678336 GCATAGCAAGTCCACTAACACC 59.322 50.000 0.00 0.00 0.00 4.16
56 57 2.736144 TAGCAAGTCCACTAACACCG 57.264 50.000 0.00 0.00 0.00 4.94
57 58 0.756903 AGCAAGTCCACTAACACCGT 59.243 50.000 0.00 0.00 0.00 4.83
58 59 1.965643 AGCAAGTCCACTAACACCGTA 59.034 47.619 0.00 0.00 0.00 4.02
59 60 2.064014 GCAAGTCCACTAACACCGTAC 58.936 52.381 0.00 0.00 0.00 3.67
60 61 2.288640 GCAAGTCCACTAACACCGTACT 60.289 50.000 0.00 0.00 0.00 2.73
61 62 3.314553 CAAGTCCACTAACACCGTACTG 58.685 50.000 0.00 0.00 0.00 2.74
62 63 2.590821 AGTCCACTAACACCGTACTGT 58.409 47.619 0.00 0.00 0.00 3.55
63 64 3.754965 AGTCCACTAACACCGTACTGTA 58.245 45.455 0.00 0.00 0.00 2.74
64 65 4.144297 AGTCCACTAACACCGTACTGTAA 58.856 43.478 0.00 0.00 0.00 2.41
65 66 4.768968 AGTCCACTAACACCGTACTGTAAT 59.231 41.667 0.00 0.00 0.00 1.89
66 67 5.098211 GTCCACTAACACCGTACTGTAATC 58.902 45.833 0.00 0.00 0.00 1.75
67 68 4.766373 TCCACTAACACCGTACTGTAATCA 59.234 41.667 0.00 0.00 0.00 2.57
68 69 5.243507 TCCACTAACACCGTACTGTAATCAA 59.756 40.000 0.00 0.00 0.00 2.57
69 70 5.927689 CCACTAACACCGTACTGTAATCAAA 59.072 40.000 0.00 0.00 0.00 2.69
70 71 6.128742 CCACTAACACCGTACTGTAATCAAAC 60.129 42.308 0.00 0.00 0.00 2.93
71 72 6.421501 CACTAACACCGTACTGTAATCAAACA 59.578 38.462 0.00 0.00 0.00 2.83
72 73 6.985645 ACTAACACCGTACTGTAATCAAACAA 59.014 34.615 0.00 0.00 0.00 2.83
73 74 6.870971 AACACCGTACTGTAATCAAACAAT 57.129 33.333 0.00 0.00 0.00 2.71
74 75 6.870971 ACACCGTACTGTAATCAAACAATT 57.129 33.333 0.00 0.00 0.00 2.32
75 76 7.266922 ACACCGTACTGTAATCAAACAATTT 57.733 32.000 0.00 0.00 0.00 1.82
76 77 8.380743 ACACCGTACTGTAATCAAACAATTTA 57.619 30.769 0.00 0.00 0.00 1.40
77 78 9.005777 ACACCGTACTGTAATCAAACAATTTAT 57.994 29.630 0.00 0.00 0.00 1.40
78 79 9.485591 CACCGTACTGTAATCAAACAATTTATC 57.514 33.333 0.00 0.00 0.00 1.75
79 80 8.671028 ACCGTACTGTAATCAAACAATTTATCC 58.329 33.333 0.00 0.00 0.00 2.59
80 81 8.670135 CCGTACTGTAATCAAACAATTTATCCA 58.330 33.333 0.00 0.00 0.00 3.41
81 82 9.485591 CGTACTGTAATCAAACAATTTATCCAC 57.514 33.333 0.00 0.00 0.00 4.02
82 83 9.783256 GTACTGTAATCAAACAATTTATCCACC 57.217 33.333 0.00 0.00 0.00 4.61
83 84 7.535139 ACTGTAATCAAACAATTTATCCACCG 58.465 34.615 0.00 0.00 0.00 4.94
84 85 7.392113 ACTGTAATCAAACAATTTATCCACCGA 59.608 33.333 0.00 0.00 0.00 4.69
85 86 7.757526 TGTAATCAAACAATTTATCCACCGAG 58.242 34.615 0.00 0.00 0.00 4.63
86 87 5.835113 ATCAAACAATTTATCCACCGAGG 57.165 39.130 0.00 0.00 39.47 4.63
87 88 4.013728 TCAAACAATTTATCCACCGAGGG 58.986 43.478 0.00 0.00 38.24 4.30
88 89 2.052782 ACAATTTATCCACCGAGGGC 57.947 50.000 0.00 0.00 38.24 5.19
89 90 1.564348 ACAATTTATCCACCGAGGGCT 59.436 47.619 0.00 0.00 38.24 5.19
90 91 2.025321 ACAATTTATCCACCGAGGGCTT 60.025 45.455 0.00 0.00 38.24 4.35
91 92 2.348411 ATTTATCCACCGAGGGCTTG 57.652 50.000 0.00 0.00 38.24 4.01
92 93 0.254747 TTTATCCACCGAGGGCTTGG 59.745 55.000 0.00 0.00 40.09 3.61
93 94 2.265467 TTATCCACCGAGGGCTTGGC 62.265 60.000 0.00 0.00 37.67 4.52
96 97 4.641645 CACCGAGGGCTTGGCACA 62.642 66.667 0.00 0.00 37.67 4.57
97 98 4.643387 ACCGAGGGCTTGGCACAC 62.643 66.667 0.00 0.00 39.29 3.82
129 130 4.351054 CCAGCCACCACCCCAGAC 62.351 72.222 0.00 0.00 0.00 3.51
130 131 4.351054 CAGCCACCACCCCAGACC 62.351 72.222 0.00 0.00 0.00 3.85
133 134 3.650950 CCACCACCCCAGACCCAG 61.651 72.222 0.00 0.00 0.00 4.45
134 135 4.351054 CACCACCCCAGACCCAGC 62.351 72.222 0.00 0.00 0.00 4.85
135 136 4.599500 ACCACCCCAGACCCAGCT 62.599 66.667 0.00 0.00 0.00 4.24
136 137 2.285368 CCACCCCAGACCCAGCTA 60.285 66.667 0.00 0.00 0.00 3.32
137 138 2.370445 CCACCCCAGACCCAGCTAG 61.370 68.421 0.00 0.00 0.00 3.42
138 139 2.689034 ACCCCAGACCCAGCTAGC 60.689 66.667 6.62 6.62 0.00 3.42
139 140 2.688666 CCCCAGACCCAGCTAGCA 60.689 66.667 18.83 0.00 0.00 3.49
140 141 2.739996 CCCCAGACCCAGCTAGCAG 61.740 68.421 18.83 9.15 0.00 4.24
141 142 2.188994 CCAGACCCAGCTAGCAGC 59.811 66.667 18.83 0.80 42.84 5.25
142 143 2.663075 CCAGACCCAGCTAGCAGCA 61.663 63.158 18.83 0.00 45.56 4.41
143 144 1.153409 CAGACCCAGCTAGCAGCAG 60.153 63.158 18.83 5.68 45.56 4.24
144 145 1.305633 AGACCCAGCTAGCAGCAGA 60.306 57.895 18.83 0.00 45.56 4.26
145 146 1.153469 GACCCAGCTAGCAGCAGAC 60.153 63.158 18.83 0.00 45.56 3.51
146 147 2.188994 CCCAGCTAGCAGCAGACC 59.811 66.667 18.83 0.00 45.56 3.85
147 148 2.663075 CCCAGCTAGCAGCAGACCA 61.663 63.158 18.83 0.00 45.56 4.02
148 149 1.525923 CCAGCTAGCAGCAGACCAT 59.474 57.895 18.83 0.00 45.56 3.55
149 150 0.532417 CCAGCTAGCAGCAGACCATC 60.532 60.000 18.83 0.00 45.56 3.51
150 151 0.177373 CAGCTAGCAGCAGACCATCA 59.823 55.000 18.83 0.00 45.56 3.07
151 152 0.907486 AGCTAGCAGCAGACCATCAA 59.093 50.000 18.83 0.00 45.56 2.57
152 153 1.134461 AGCTAGCAGCAGACCATCAAG 60.134 52.381 18.83 0.00 45.56 3.02
153 154 1.950828 CTAGCAGCAGACCATCAAGG 58.049 55.000 0.00 0.00 45.67 3.61
175 176 4.992740 AACATGCCGGGCCTGCAA 62.993 61.111 26.53 10.40 42.92 4.08
178 179 4.764771 ATGCCGGGCCTGCAACAT 62.765 61.111 26.53 14.23 42.92 2.71
181 182 3.443045 CCGGGCCTGCAACATGTC 61.443 66.667 5.85 0.00 0.00 3.06
182 183 3.803082 CGGGCCTGCAACATGTCG 61.803 66.667 0.84 0.00 0.00 4.35
183 184 2.672996 GGGCCTGCAACATGTCGT 60.673 61.111 0.84 0.00 0.00 4.34
184 185 2.268076 GGGCCTGCAACATGTCGTT 61.268 57.895 0.84 0.00 38.83 3.85
185 186 1.210155 GGCCTGCAACATGTCGTTC 59.790 57.895 0.00 0.00 34.86 3.95
186 187 1.514678 GGCCTGCAACATGTCGTTCA 61.515 55.000 0.00 0.00 34.86 3.18
187 188 0.385974 GCCTGCAACATGTCGTTCAC 60.386 55.000 0.00 0.00 34.86 3.18
188 189 0.238289 CCTGCAACATGTCGTTCACC 59.762 55.000 0.00 0.00 34.86 4.02
189 190 0.943673 CTGCAACATGTCGTTCACCA 59.056 50.000 0.00 0.00 34.86 4.17
190 191 0.943673 TGCAACATGTCGTTCACCAG 59.056 50.000 0.00 0.00 34.86 4.00
191 192 0.385974 GCAACATGTCGTTCACCAGC 60.386 55.000 0.00 0.00 34.86 4.85
192 193 0.238289 CAACATGTCGTTCACCAGCC 59.762 55.000 0.00 0.00 34.86 4.85
193 194 0.889186 AACATGTCGTTCACCAGCCC 60.889 55.000 0.00 0.00 29.27 5.19
194 195 1.302431 CATGTCGTTCACCAGCCCA 60.302 57.895 0.00 0.00 0.00 5.36
195 196 1.302511 ATGTCGTTCACCAGCCCAC 60.303 57.895 0.00 0.00 0.00 4.61
196 197 2.050836 ATGTCGTTCACCAGCCCACA 62.051 55.000 0.00 0.00 0.00 4.17
197 198 1.961277 GTCGTTCACCAGCCCACAG 60.961 63.158 0.00 0.00 0.00 3.66
198 199 2.669569 CGTTCACCAGCCCACAGG 60.670 66.667 0.00 0.00 0.00 4.00
199 200 2.515901 GTTCACCAGCCCACAGGT 59.484 61.111 0.00 0.00 35.76 4.00
200 201 1.600916 GTTCACCAGCCCACAGGTC 60.601 63.158 0.00 0.00 32.38 3.85
201 202 2.075566 TTCACCAGCCCACAGGTCA 61.076 57.895 0.00 0.00 32.38 4.02
202 203 2.033141 CACCAGCCCACAGGTCAG 59.967 66.667 0.00 0.00 32.38 3.51
203 204 2.448542 ACCAGCCCACAGGTCAGT 60.449 61.111 0.00 0.00 27.19 3.41
204 205 2.348998 CCAGCCCACAGGTCAGTC 59.651 66.667 0.00 0.00 34.57 3.51
205 206 2.519622 CCAGCCCACAGGTCAGTCA 61.520 63.158 0.00 0.00 34.57 3.41
206 207 1.004080 CAGCCCACAGGTCAGTCAG 60.004 63.158 0.00 0.00 34.57 3.51
207 208 2.359230 GCCCACAGGTCAGTCAGC 60.359 66.667 0.00 0.00 34.57 4.26
208 209 2.888447 GCCCACAGGTCAGTCAGCT 61.888 63.158 0.00 0.00 34.57 4.24
213 214 3.432517 CAGGTCAGTCAGCTGCTAC 57.567 57.895 9.47 2.65 43.58 3.58
214 215 0.894141 CAGGTCAGTCAGCTGCTACT 59.106 55.000 9.47 5.42 43.58 2.57
215 216 2.095461 CAGGTCAGTCAGCTGCTACTA 58.905 52.381 9.47 0.00 43.58 1.82
216 217 2.692557 CAGGTCAGTCAGCTGCTACTAT 59.307 50.000 9.47 0.00 43.58 2.12
217 218 3.131933 CAGGTCAGTCAGCTGCTACTATT 59.868 47.826 9.47 0.00 43.58 1.73
218 219 3.131933 AGGTCAGTCAGCTGCTACTATTG 59.868 47.826 9.47 0.00 42.29 1.90
219 220 3.118956 GGTCAGTCAGCTGCTACTATTGT 60.119 47.826 9.47 0.00 42.29 2.71
220 221 4.098044 GGTCAGTCAGCTGCTACTATTGTA 59.902 45.833 9.47 0.00 42.29 2.41
221 222 5.038033 GTCAGTCAGCTGCTACTATTGTAC 58.962 45.833 9.47 0.00 42.29 2.90
222 223 4.950475 TCAGTCAGCTGCTACTATTGTACT 59.050 41.667 9.47 0.00 42.29 2.73
223 224 5.066634 TCAGTCAGCTGCTACTATTGTACTC 59.933 44.000 9.47 0.00 42.29 2.59
224 225 4.339814 AGTCAGCTGCTACTATTGTACTCC 59.660 45.833 9.47 0.00 0.00 3.85
225 226 3.637229 TCAGCTGCTACTATTGTACTCCC 59.363 47.826 9.47 0.00 0.00 4.30
226 227 3.639094 CAGCTGCTACTATTGTACTCCCT 59.361 47.826 0.00 0.00 0.00 4.20
227 228 3.892588 AGCTGCTACTATTGTACTCCCTC 59.107 47.826 0.00 0.00 0.00 4.30
228 229 3.006003 GCTGCTACTATTGTACTCCCTCC 59.994 52.174 0.00 0.00 0.00 4.30
229 230 3.220110 TGCTACTATTGTACTCCCTCCG 58.780 50.000 0.00 0.00 0.00 4.63
230 231 3.220940 GCTACTATTGTACTCCCTCCGT 58.779 50.000 0.00 0.00 0.00 4.69
231 232 3.635836 GCTACTATTGTACTCCCTCCGTT 59.364 47.826 0.00 0.00 0.00 4.44
232 233 4.261530 GCTACTATTGTACTCCCTCCGTTC 60.262 50.000 0.00 0.00 0.00 3.95
233 234 3.029570 ACTATTGTACTCCCTCCGTTCC 58.970 50.000 0.00 0.00 0.00 3.62
234 235 0.822164 ATTGTACTCCCTCCGTTCCG 59.178 55.000 0.00 0.00 0.00 4.30
235 236 0.251297 TTGTACTCCCTCCGTTCCGA 60.251 55.000 0.00 0.00 0.00 4.55
236 237 0.251297 TGTACTCCCTCCGTTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
237 238 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
238 239 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
239 240 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
240 241 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
241 242 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
242 243 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
243 244 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
244 245 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
245 246 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
246 247 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
247 248 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
248 249 5.389859 TCCGTTCCGAATTACTTGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
249 250 5.404946 TCCGTTCCGAATTACTTGTCTTAG 58.595 41.667 0.00 0.00 0.00 2.18
250 251 5.183713 TCCGTTCCGAATTACTTGTCTTAGA 59.816 40.000 0.00 0.00 0.00 2.10
251 252 6.040878 CCGTTCCGAATTACTTGTCTTAGAT 58.959 40.000 0.00 0.00 0.00 1.98
252 253 6.534079 CCGTTCCGAATTACTTGTCTTAGATT 59.466 38.462 0.00 0.00 0.00 2.40
253 254 7.064253 CCGTTCCGAATTACTTGTCTTAGATTT 59.936 37.037 0.00 0.00 0.00 2.17
254 255 7.898309 CGTTCCGAATTACTTGTCTTAGATTTG 59.102 37.037 0.00 0.00 0.00 2.32
255 256 8.718734 GTTCCGAATTACTTGTCTTAGATTTGT 58.281 33.333 0.00 0.00 0.00 2.83
256 257 8.251750 TCCGAATTACTTGTCTTAGATTTGTG 57.748 34.615 0.00 0.00 0.00 3.33
257 258 7.876068 TCCGAATTACTTGTCTTAGATTTGTGT 59.124 33.333 0.00 0.00 0.00 3.72
258 259 9.146984 CCGAATTACTTGTCTTAGATTTGTGTA 57.853 33.333 0.00 0.00 0.00 2.90
265 266 9.862371 ACTTGTCTTAGATTTGTGTAGATACAG 57.138 33.333 0.00 0.00 36.78 2.74
288 289 8.700051 ACAGATGTATCTAGCACTAAAATGAGT 58.300 33.333 0.00 0.00 34.85 3.41
289 290 9.190858 CAGATGTATCTAGCACTAAAATGAGTC 57.809 37.037 0.00 0.00 34.85 3.36
290 291 9.142014 AGATGTATCTAGCACTAAAATGAGTCT 57.858 33.333 0.00 0.00 34.85 3.24
293 294 9.628500 TGTATCTAGCACTAAAATGAGTCTAGA 57.372 33.333 11.59 11.59 38.76 2.43
297 298 9.628500 TCTAGCACTAAAATGAGTCTAGATACA 57.372 33.333 0.00 0.00 34.65 2.29
300 301 8.364142 AGCACTAAAATGAGTCTAGATACATCC 58.636 37.037 12.66 0.00 0.00 3.51
301 302 7.327275 GCACTAAAATGAGTCTAGATACATCCG 59.673 40.741 12.66 6.68 0.00 4.18
302 303 8.353684 CACTAAAATGAGTCTAGATACATCCGT 58.646 37.037 12.66 7.10 0.00 4.69
303 304 9.570468 ACTAAAATGAGTCTAGATACATCCGTA 57.430 33.333 12.66 6.93 0.00 4.02
320 321 8.786826 ACATCCGTATCTAAACAAATTCAAGA 57.213 30.769 0.00 0.00 0.00 3.02
321 322 8.665685 ACATCCGTATCTAAACAAATTCAAGAC 58.334 33.333 0.00 0.00 0.00 3.01
322 323 8.664798 CATCCGTATCTAAACAAATTCAAGACA 58.335 33.333 0.00 0.00 0.00 3.41
323 324 8.610248 TCCGTATCTAAACAAATTCAAGACAA 57.390 30.769 0.00 0.00 0.00 3.18
324 325 8.717821 TCCGTATCTAAACAAATTCAAGACAAG 58.282 33.333 0.00 0.00 0.00 3.16
325 326 8.504005 CCGTATCTAAACAAATTCAAGACAAGT 58.496 33.333 0.00 0.00 0.00 3.16
332 333 8.661352 AAACAAATTCAAGACAAGTAATTGGG 57.339 30.769 7.93 0.00 0.00 4.12
333 334 7.595819 ACAAATTCAAGACAAGTAATTGGGA 57.404 32.000 7.93 0.00 0.00 4.37
334 335 8.017418 ACAAATTCAAGACAAGTAATTGGGAA 57.983 30.769 7.93 6.05 0.00 3.97
335 336 7.926018 ACAAATTCAAGACAAGTAATTGGGAAC 59.074 33.333 7.93 0.00 0.00 3.62
336 337 7.595819 AATTCAAGACAAGTAATTGGGAACA 57.404 32.000 7.93 0.00 39.83 3.18
337 338 6.633500 TTCAAGACAAGTAATTGGGAACAG 57.367 37.500 7.93 0.00 44.54 3.16
338 339 5.935945 TCAAGACAAGTAATTGGGAACAGA 58.064 37.500 7.93 0.00 44.54 3.41
339 340 5.997746 TCAAGACAAGTAATTGGGAACAGAG 59.002 40.000 7.93 0.00 44.54 3.35
340 341 4.911390 AGACAAGTAATTGGGAACAGAGG 58.089 43.478 7.93 0.00 44.54 3.69
341 342 4.010349 GACAAGTAATTGGGAACAGAGGG 58.990 47.826 7.93 0.00 44.54 4.30
342 343 3.655777 ACAAGTAATTGGGAACAGAGGGA 59.344 43.478 7.93 0.00 44.54 4.20
343 344 4.263506 ACAAGTAATTGGGAACAGAGGGAG 60.264 45.833 7.93 0.00 44.54 4.30
344 345 3.532102 AGTAATTGGGAACAGAGGGAGT 58.468 45.455 0.00 0.00 44.54 3.85
345 346 4.695606 AGTAATTGGGAACAGAGGGAGTA 58.304 43.478 0.00 0.00 44.54 2.59
346 347 4.470304 AGTAATTGGGAACAGAGGGAGTAC 59.530 45.833 0.00 0.00 44.54 2.73
347 348 2.715763 TTGGGAACAGAGGGAGTACT 57.284 50.000 0.00 0.00 44.54 2.73
348 349 2.233305 TGGGAACAGAGGGAGTACTC 57.767 55.000 14.87 14.87 37.77 2.59
349 350 1.273098 TGGGAACAGAGGGAGTACTCC 60.273 57.143 30.72 30.72 41.88 3.85
350 351 3.915913 TGGGAACAGAGGGAGTACTCCA 61.916 54.545 36.73 15.19 43.38 3.86
353 354 7.137205 TGGGAACAGAGGGAGTACTCCATAT 62.137 48.000 36.73 28.14 43.38 1.78
367 368 4.842574 ACTCCATATACATGTGCACAACA 58.157 39.130 25.72 12.21 44.79 3.33
386 387 3.228759 AGCACACCCACGTACGGT 61.229 61.111 21.06 4.91 0.00 4.83
387 388 2.735857 GCACACCCACGTACGGTC 60.736 66.667 21.06 0.00 0.00 4.79
388 389 2.729455 CACACCCACGTACGGTCA 59.271 61.111 21.06 0.00 0.00 4.02
389 390 1.662446 CACACCCACGTACGGTCAC 60.662 63.158 21.06 0.00 0.00 3.67
390 391 2.048877 CACCCACGTACGGTCACC 60.049 66.667 21.06 0.00 0.00 4.02
391 392 2.521465 ACCCACGTACGGTCACCA 60.521 61.111 21.06 0.00 0.00 4.17
392 393 2.260434 CCCACGTACGGTCACCAG 59.740 66.667 21.06 0.00 0.00 4.00
393 394 2.567497 CCCACGTACGGTCACCAGT 61.567 63.158 21.06 0.00 0.00 4.00
394 395 1.372499 CCACGTACGGTCACCAGTG 60.372 63.158 21.06 5.74 0.00 3.66
395 396 2.019951 CACGTACGGTCACCAGTGC 61.020 63.158 21.06 0.00 0.00 4.40
396 397 2.337170 CGTACGGTCACCAGTGCA 59.663 61.111 7.57 0.00 0.00 4.57
450 452 5.327737 TGGTACAACCCATAGTTTTTCCT 57.672 39.130 0.00 0.00 37.50 3.36
451 453 5.707495 TGGTACAACCCATAGTTTTTCCTT 58.293 37.500 0.00 0.00 37.50 3.36
452 454 6.137559 TGGTACAACCCATAGTTTTTCCTTT 58.862 36.000 0.00 0.00 37.50 3.11
453 455 6.612049 TGGTACAACCCATAGTTTTTCCTTTT 59.388 34.615 0.00 0.00 37.50 2.27
454 456 7.125963 TGGTACAACCCATAGTTTTTCCTTTTT 59.874 33.333 0.00 0.00 37.50 1.94
455 457 7.654520 GGTACAACCCATAGTTTTTCCTTTTTC 59.345 37.037 0.00 0.00 36.18 2.29
456 458 7.432148 ACAACCCATAGTTTTTCCTTTTTCT 57.568 32.000 0.00 0.00 36.18 2.52
460 462 6.267699 ACCCATAGTTTTTCCTTTTTCTCTGG 59.732 38.462 0.00 0.00 0.00 3.86
491 493 2.364186 CAAAGCCCATCCCCCACC 60.364 66.667 0.00 0.00 0.00 4.61
522 524 4.449638 CAGACAGCCTCCTGGAGA 57.550 61.111 25.18 0.00 43.53 3.71
532 534 2.167487 GCCTCCTGGAGAGACTACAAAG 59.833 54.545 25.18 5.18 46.50 2.77
533 535 3.702792 CCTCCTGGAGAGACTACAAAGA 58.297 50.000 25.18 0.00 46.50 2.52
561 616 1.924731 TTTTTCACCACACCACACCA 58.075 45.000 0.00 0.00 0.00 4.17
562 617 1.178276 TTTTCACCACACCACACCAC 58.822 50.000 0.00 0.00 0.00 4.16
563 618 0.038310 TTTCACCACACCACACCACA 59.962 50.000 0.00 0.00 0.00 4.17
564 619 0.678366 TTCACCACACCACACCACAC 60.678 55.000 0.00 0.00 0.00 3.82
565 620 2.118404 CACCACACCACACCACACC 61.118 63.158 0.00 0.00 0.00 4.16
566 621 2.273776 CCACACCACACCACACCA 59.726 61.111 0.00 0.00 0.00 4.17
567 622 2.118404 CCACACCACACCACACCAC 61.118 63.158 0.00 0.00 0.00 4.16
568 623 1.377856 CACACCACACCACACCACA 60.378 57.895 0.00 0.00 0.00 4.17
569 624 1.377987 ACACCACACCACACCACAC 60.378 57.895 0.00 0.00 0.00 3.82
570 625 2.118404 CACCACACCACACCACACC 61.118 63.158 0.00 0.00 0.00 4.16
571 626 2.273776 CCACACCACACCACACCA 59.726 61.111 0.00 0.00 0.00 4.17
584 639 2.100197 CCACACCATCCTAACGAGAGA 58.900 52.381 0.00 0.00 0.00 3.10
586 641 1.751924 ACACCATCCTAACGAGAGAGC 59.248 52.381 0.00 0.00 0.00 4.09
596 666 0.949397 ACGAGAGAGCGTGTGTGTAA 59.051 50.000 0.00 0.00 43.79 2.41
616 686 0.317799 TAACCGTGCATGTACCGTGT 59.682 50.000 8.45 0.76 0.00 4.49
637 707 5.460748 GTGTGGTACAAACCTTGCAATTTAC 59.539 40.000 0.00 0.00 46.91 2.01
639 709 6.546403 TGTGGTACAAACCTTGCAATTTACTA 59.454 34.615 0.00 0.00 46.91 1.82
641 711 7.753580 GTGGTACAAACCTTGCAATTTACTATC 59.246 37.037 0.00 0.00 46.91 2.08
759 860 1.610327 GGGAGGAAGAAGGGAAGGC 59.390 63.158 0.00 0.00 0.00 4.35
760 861 1.610327 GGAGGAAGAAGGGAAGGCC 59.390 63.158 0.00 0.00 0.00 5.19
761 862 1.222113 GAGGAAGAAGGGAAGGCCG 59.778 63.158 0.00 0.00 33.83 6.13
762 863 2.258748 GAGGAAGAAGGGAAGGCCGG 62.259 65.000 0.00 0.00 33.83 6.13
763 864 2.298661 GGAAGAAGGGAAGGCCGGA 61.299 63.158 5.05 0.00 33.83 5.14
764 865 1.222113 GAAGAAGGGAAGGCCGGAG 59.778 63.158 5.05 0.00 33.83 4.63
806 907 3.119849 ACGACACATTCTTAAATGCAGGC 60.120 43.478 0.00 0.00 45.16 4.85
913 1026 4.748798 CACTGCCCCTCCCTCCCT 62.749 72.222 0.00 0.00 0.00 4.20
948 1070 1.127343 CTCTCTTCCTCCATCCACCC 58.873 60.000 0.00 0.00 0.00 4.61
951 1073 0.326618 TCTTCCTCCATCCACCCCTC 60.327 60.000 0.00 0.00 0.00 4.30
978 1100 2.363306 TCTCCCAAAGAAAGCTTGCA 57.637 45.000 7.33 0.00 33.79 4.08
979 1101 2.665165 TCTCCCAAAGAAAGCTTGCAA 58.335 42.857 7.33 0.00 33.79 4.08
1046 1180 2.225522 TGGTCAAGATCCAGGTACCTCA 60.226 50.000 12.84 1.27 0.00 3.86
1047 1181 2.168728 GGTCAAGATCCAGGTACCTCAC 59.831 54.545 12.84 3.79 0.00 3.51
1048 1182 3.100671 GTCAAGATCCAGGTACCTCACT 58.899 50.000 12.84 6.17 0.00 3.41
1066 1200 1.132881 ACTCTCTCCATCCATCCCTCC 60.133 57.143 0.00 0.00 0.00 4.30
1068 1202 0.839853 CTCTCCATCCATCCCTCCCC 60.840 65.000 0.00 0.00 0.00 4.81
1073 1207 3.367604 ATCCATCCCTCCCCTGGCA 62.368 63.158 0.00 0.00 0.00 4.92
1109 1243 7.875041 TCTGTTTCTTTCCATCTTTCTCTGTAG 59.125 37.037 0.00 0.00 0.00 2.74
1137 1271 0.038166 GTGGATTTGTGGGGAGCTCA 59.962 55.000 17.19 0.00 0.00 4.26
1138 1272 1.002069 TGGATTTGTGGGGAGCTCAT 58.998 50.000 17.19 0.00 0.00 2.90
1154 1291 2.351157 GCTCATCAACTGTTCTTGGTGC 60.351 50.000 0.00 0.00 33.00 5.01
1155 1292 3.144506 CTCATCAACTGTTCTTGGTGCT 58.855 45.455 0.00 0.00 33.00 4.40
1156 1293 3.554934 TCATCAACTGTTCTTGGTGCTT 58.445 40.909 0.00 0.00 33.00 3.91
1157 1294 3.316029 TCATCAACTGTTCTTGGTGCTTG 59.684 43.478 0.00 0.00 33.00 4.01
1158 1295 2.997980 TCAACTGTTCTTGGTGCTTGA 58.002 42.857 0.00 0.00 0.00 3.02
1197 1346 2.294512 CTGTTCTTGTTTCTTGGGGCTC 59.705 50.000 0.00 0.00 0.00 4.70
1203 1352 1.332195 GTTTCTTGGGGCTCTGCTTT 58.668 50.000 0.00 0.00 0.00 3.51
1204 1353 1.000171 GTTTCTTGGGGCTCTGCTTTG 60.000 52.381 0.00 0.00 0.00 2.77
1205 1354 1.181098 TTCTTGGGGCTCTGCTTTGC 61.181 55.000 0.00 0.00 0.00 3.68
1207 1356 1.593296 CTTGGGGCTCTGCTTTGCTC 61.593 60.000 0.00 0.00 0.00 4.26
1297 1454 1.063942 TGCTCCAGAGGATCGAAGGTA 60.064 52.381 0.00 0.00 42.67 3.08
1298 1455 1.338655 GCTCCAGAGGATCGAAGGTAC 59.661 57.143 0.00 0.00 42.67 3.34
1299 1456 2.656002 CTCCAGAGGATCGAAGGTACA 58.344 52.381 0.00 0.00 42.67 2.90
1300 1457 2.359531 CTCCAGAGGATCGAAGGTACAC 59.640 54.545 0.00 0.00 42.67 2.90
1301 1458 2.100197 CCAGAGGATCGAAGGTACACA 58.900 52.381 0.00 0.00 42.67 3.72
1302 1459 2.159226 CCAGAGGATCGAAGGTACACAC 60.159 54.545 0.00 0.00 42.67 3.82
1329 1486 3.080641 CCCAGCCACTGTCCATCA 58.919 61.111 0.00 0.00 0.00 3.07
1332 1489 1.681666 CAGCCACTGTCCATCACCT 59.318 57.895 0.00 0.00 0.00 4.00
1333 1490 0.037303 CAGCCACTGTCCATCACCTT 59.963 55.000 0.00 0.00 0.00 3.50
1334 1491 0.326264 AGCCACTGTCCATCACCTTC 59.674 55.000 0.00 0.00 0.00 3.46
1335 1492 0.678048 GCCACTGTCCATCACCTTCC 60.678 60.000 0.00 0.00 0.00 3.46
1336 1493 0.692476 CCACTGTCCATCACCTTCCA 59.308 55.000 0.00 0.00 0.00 3.53
1337 1494 1.073763 CCACTGTCCATCACCTTCCAA 59.926 52.381 0.00 0.00 0.00 3.53
1338 1495 2.488891 CCACTGTCCATCACCTTCCAAA 60.489 50.000 0.00 0.00 0.00 3.28
1339 1496 3.424703 CACTGTCCATCACCTTCCAAAT 58.575 45.455 0.00 0.00 0.00 2.32
1456 1620 4.393834 TCCTGCTGCTGTTGTTGTTATAA 58.606 39.130 0.00 0.00 0.00 0.98
1457 1621 4.824537 TCCTGCTGCTGTTGTTGTTATAAA 59.175 37.500 0.00 0.00 0.00 1.40
1463 1659 8.138074 TGCTGCTGTTGTTGTTATAAATGTAAA 58.862 29.630 0.00 0.00 0.00 2.01
1482 1678 2.926778 ATGTAAGCATCTCCTCTGCC 57.073 50.000 0.00 0.00 40.56 4.85
1501 1697 2.952310 GCCCTGTTAATAAAGGCCTGAG 59.048 50.000 5.69 0.00 37.66 3.35
1543 1740 1.588824 TTGCATCTGGCCTGAAAGCG 61.589 55.000 24.94 13.53 43.89 4.68
1599 1796 3.881937 AGAAATCCCTGCTTTTCATGC 57.118 42.857 0.00 0.00 34.91 4.06
1624 1821 3.321682 TCAGGGCCATGCTAATTAAATGC 59.678 43.478 13.87 0.00 0.00 3.56
1625 1822 2.634453 AGGGCCATGCTAATTAAATGCC 59.366 45.455 6.18 0.00 0.00 4.40
1627 1824 2.368221 GGCCATGCTAATTAAATGCCCA 59.632 45.455 0.00 0.00 0.00 5.36
1628 1825 3.555586 GGCCATGCTAATTAAATGCCCAG 60.556 47.826 0.00 0.00 0.00 4.45
1649 1848 6.316390 CCCAGAGACCAAATTGATGTAGTAAC 59.684 42.308 0.00 0.00 0.00 2.50
1685 1884 4.878397 GGATGTTGTGAGTAAATCCTGAGG 59.122 45.833 0.00 0.00 35.04 3.86
1691 1890 7.942341 TGTTGTGAGTAAATCCTGAGGTAATTT 59.058 33.333 0.00 0.66 0.00 1.82
1692 1891 7.921786 TGTGAGTAAATCCTGAGGTAATTTG 57.078 36.000 8.06 0.00 0.00 2.32
1693 1892 6.374333 TGTGAGTAAATCCTGAGGTAATTTGC 59.626 38.462 8.06 6.93 0.00 3.68
1694 1893 6.599638 GTGAGTAAATCCTGAGGTAATTTGCT 59.400 38.462 13.47 13.47 37.82 3.91
1695 1894 7.769044 GTGAGTAAATCCTGAGGTAATTTGCTA 59.231 37.037 13.54 3.92 36.08 3.49
1696 1895 7.987458 TGAGTAAATCCTGAGGTAATTTGCTAG 59.013 37.037 13.54 0.00 36.08 3.42
1697 1896 7.862675 AGTAAATCCTGAGGTAATTTGCTAGT 58.137 34.615 12.41 0.00 34.79 2.57
1698 1897 8.329502 AGTAAATCCTGAGGTAATTTGCTAGTT 58.670 33.333 12.41 0.00 34.79 2.24
1699 1898 9.609346 GTAAATCCTGAGGTAATTTGCTAGTTA 57.391 33.333 8.06 0.00 0.00 2.24
1700 1899 8.738645 AAATCCTGAGGTAATTTGCTAGTTAG 57.261 34.615 0.00 0.00 0.00 2.34
1704 1903 6.351881 CCTGAGGTAATTTGCTAGTTAGTGGA 60.352 42.308 0.00 0.00 0.00 4.02
1705 1904 7.195374 TGAGGTAATTTGCTAGTTAGTGGAT 57.805 36.000 0.00 0.00 0.00 3.41
1708 1907 8.959705 AGGTAATTTGCTAGTTAGTGGATAAC 57.040 34.615 0.00 0.00 43.58 1.89
1726 1925 0.185175 ACAGGTCCAAAACTCACCCC 59.815 55.000 0.00 0.00 0.00 4.95
1727 1926 0.184933 CAGGTCCAAAACTCACCCCA 59.815 55.000 0.00 0.00 0.00 4.96
1728 1927 1.158007 AGGTCCAAAACTCACCCCAT 58.842 50.000 0.00 0.00 0.00 4.00
1729 1928 1.203050 AGGTCCAAAACTCACCCCATG 60.203 52.381 0.00 0.00 0.00 3.66
1730 1929 1.480498 GGTCCAAAACTCACCCCATGT 60.480 52.381 0.00 0.00 0.00 3.21
1731 1930 1.613437 GTCCAAAACTCACCCCATGTG 59.387 52.381 0.00 0.00 46.88 3.21
1738 1937 4.919774 AACTCACCCCATGTGTATGTAA 57.080 40.909 0.00 0.00 45.61 2.41
1740 1939 4.780815 ACTCACCCCATGTGTATGTAATG 58.219 43.478 0.00 0.00 45.61 1.90
1811 2011 1.213678 ACACACAGGATGGATGGATGG 59.786 52.381 0.00 0.00 43.62 3.51
1812 2012 0.848735 ACACAGGATGGATGGATGGG 59.151 55.000 0.00 0.00 43.62 4.00
1813 2013 0.848735 CACAGGATGGATGGATGGGT 59.151 55.000 0.00 0.00 43.62 4.51
1814 2014 0.848735 ACAGGATGGATGGATGGGTG 59.151 55.000 0.00 0.00 43.62 4.61
1815 2015 0.111832 CAGGATGGATGGATGGGTGG 59.888 60.000 0.00 0.00 0.00 4.61
1816 2016 1.070127 AGGATGGATGGATGGGTGGG 61.070 60.000 0.00 0.00 0.00 4.61
1817 2017 1.363530 GGATGGATGGATGGGTGGGT 61.364 60.000 0.00 0.00 0.00 4.51
1818 2018 0.178981 GATGGATGGATGGGTGGGTG 60.179 60.000 0.00 0.00 0.00 4.61
1862 2062 3.550820 TCACTGCACAAACCTACACATT 58.449 40.909 0.00 0.00 0.00 2.71
1882 2082 6.392354 ACATTCTTGTGATGCTTAATTGGTG 58.608 36.000 0.00 0.00 33.85 4.17
1883 2083 5.389859 TTCTTGTGATGCTTAATTGGTGG 57.610 39.130 0.00 0.00 0.00 4.61
1887 2087 4.148079 TGTGATGCTTAATTGGTGGTGAA 58.852 39.130 0.00 0.00 0.00 3.18
1901 2101 3.497262 GGTGGTGAACAGTAGTACTTTGC 59.503 47.826 0.00 0.00 0.00 3.68
1910 2110 7.713507 TGAACAGTAGTACTTTGCACAGTAATT 59.286 33.333 17.12 10.08 30.86 1.40
1917 2117 7.357303 AGTACTTTGCACAGTAATTTTTACCG 58.643 34.615 14.12 0.00 30.86 4.02
1952 2153 3.838565 AGTTGTGAACTCTCCTCTCTGA 58.161 45.455 0.00 0.00 37.02 3.27
2042 2246 1.154131 CGTGGACTCTGAGACGCTG 60.154 63.158 12.44 4.05 0.00 5.18
2273 2486 2.203538 CAGGGCAAGCTTGGTGGT 60.204 61.111 27.10 0.00 0.00 4.16
2276 2489 2.521708 GGCAAGCTTGGTGGTGGT 60.522 61.111 27.10 0.00 0.00 4.16
2277 2490 2.730094 GCAAGCTTGGTGGTGGTG 59.270 61.111 27.10 0.00 0.00 4.17
2278 2491 2.859981 GCAAGCTTGGTGGTGGTGG 61.860 63.158 27.10 0.00 0.00 4.61
2399 2612 5.685520 ATGATGATGAGGATGATGAGGAG 57.314 43.478 0.00 0.00 0.00 3.69
2423 2636 5.460419 GGATGATGAGTTTGACGATGAGTAC 59.540 44.000 0.00 0.00 0.00 2.73
2483 2696 4.479993 GGCATCCTCAGGCAGCGT 62.480 66.667 1.62 0.00 0.00 5.07
2578 2800 1.352352 AGGGAACAACCACCATCAGAG 59.648 52.381 0.00 0.00 41.20 3.35
2644 2866 2.595754 GATGGGGAATGGCGCTCC 60.596 66.667 7.64 6.47 0.00 4.70
2690 2912 2.042639 ATGGGCCTGAACCATGGC 60.043 61.111 13.04 0.00 46.57 4.40
2768 2990 1.762460 CAGCCACCCGTCCTCCTAT 60.762 63.158 0.00 0.00 0.00 2.57
3157 3382 4.926238 GTGTCAAGAGTCACAATGTAGAGG 59.074 45.833 0.00 0.00 34.54 3.69
3158 3383 4.832823 TGTCAAGAGTCACAATGTAGAGGA 59.167 41.667 0.00 0.00 0.00 3.71
3161 3386 5.716703 TCAAGAGTCACAATGTAGAGGATGA 59.283 40.000 0.00 0.00 0.00 2.92
3162 3387 6.382282 TCAAGAGTCACAATGTAGAGGATGAT 59.618 38.462 0.00 0.00 0.00 2.45
3163 3388 6.159299 AGAGTCACAATGTAGAGGATGATG 57.841 41.667 0.00 0.00 0.00 3.07
3165 3390 4.102210 AGTCACAATGTAGAGGATGATGGG 59.898 45.833 0.00 0.00 0.00 4.00
3166 3391 3.144506 CACAATGTAGAGGATGATGGGC 58.855 50.000 0.00 0.00 0.00 5.36
3167 3392 3.051581 ACAATGTAGAGGATGATGGGCT 58.948 45.455 0.00 0.00 0.00 5.19
3187 3431 2.933495 TGGTGATGCAGTCGTACTAC 57.067 50.000 0.00 0.00 0.00 2.73
3188 3432 2.443416 TGGTGATGCAGTCGTACTACT 58.557 47.619 0.00 0.00 0.00 2.57
3315 3582 0.105964 GTGGTGCCACTGTGTGTAGA 59.894 55.000 13.68 0.00 43.12 2.59
3416 3683 1.884235 ACCTTTGCTGTGCTGAGTAC 58.116 50.000 0.00 0.00 0.00 2.73
3541 3821 9.202273 GCCATGTGAACAGAAAATAAACATTAA 57.798 29.630 0.00 0.00 0.00 1.40
3598 3878 1.152030 AGAGGACTGGACTGGGCAA 60.152 57.895 0.00 0.00 0.00 4.52
3603 3883 1.546029 GGACTGGACTGGGCAAATTTC 59.454 52.381 0.00 0.00 0.00 2.17
3620 3900 1.017177 TTCAAGCCATGACGCCGTAC 61.017 55.000 0.00 0.00 37.92 3.67
3622 3902 2.656069 AAGCCATGACGCCGTACCT 61.656 57.895 0.00 0.00 0.00 3.08
3632 3912 4.199310 TGACGCCGTACCTTTATAGTACT 58.801 43.478 0.00 0.00 38.34 2.73
3685 3965 2.853003 GGCGAAATACTGTCGAGAGAAC 59.147 50.000 17.61 2.00 45.01 3.01
3748 4043 1.530293 CTGCAACACTGAAGAGCTCAC 59.470 52.381 17.77 10.16 27.82 3.51
3796 4092 1.380380 GGACTCCATTGGGGGCTTG 60.380 63.158 8.72 0.00 38.74 4.01
3849 4145 4.702131 AGGCGGCCAATTATGATAGAATTC 59.298 41.667 23.09 0.00 0.00 2.17
3850 4146 4.142381 GGCGGCCAATTATGATAGAATTCC 60.142 45.833 15.62 0.00 0.00 3.01
3851 4147 4.458989 GCGGCCAATTATGATAGAATTCCA 59.541 41.667 2.24 0.00 0.00 3.53
3852 4148 5.126061 GCGGCCAATTATGATAGAATTCCAT 59.874 40.000 2.24 1.46 0.00 3.41
3900 4196 2.336667 GTGGTTGAAAATGAATGCGGG 58.663 47.619 0.00 0.00 0.00 6.13
3915 4213 1.404748 TGCGGGCATGATTGTAATGTG 59.595 47.619 0.00 0.00 0.00 3.21
3918 4216 2.034124 GGGCATGATTGTAATGTGGCT 58.966 47.619 0.00 0.00 35.87 4.75
4033 4331 1.330521 CTCCCACCAATACGCGAAATG 59.669 52.381 15.93 8.03 0.00 2.32
4040 4338 3.245284 ACCAATACGCGAAATGAAGATCG 59.755 43.478 15.93 0.00 41.81 3.69
4077 4375 6.525629 AGCAAATATGAGGTGGTATACAGTC 58.474 40.000 5.01 0.00 0.00 3.51
4091 4389 8.592998 GTGGTATACAGTCTTATCTGTTTTTCG 58.407 37.037 5.01 0.00 44.92 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.544301 CACTTTACAGTGTGCTTGAGGCA 61.544 47.826 5.88 0.00 44.96 4.75
3 4 2.031682 CACTTTACAGTGTGCTTGAGGC 60.032 50.000 5.88 0.00 44.96 4.70
4 5 3.885484 CACTTTACAGTGTGCTTGAGG 57.115 47.619 5.88 0.00 44.96 3.86
14 15 2.552373 GCTTAGGGTGGCACTTTACAGT 60.552 50.000 18.45 0.00 0.00 3.55
15 16 2.084546 GCTTAGGGTGGCACTTTACAG 58.915 52.381 18.45 8.56 0.00 2.74
16 17 1.422024 TGCTTAGGGTGGCACTTTACA 59.578 47.619 18.45 6.09 33.23 2.41
17 18 2.194201 TGCTTAGGGTGGCACTTTAC 57.806 50.000 18.45 5.87 33.23 2.01
18 19 3.684413 GCTATGCTTAGGGTGGCACTTTA 60.684 47.826 18.45 7.52 41.39 1.85
19 20 2.945890 GCTATGCTTAGGGTGGCACTTT 60.946 50.000 18.45 8.54 41.39 2.66
20 21 1.408822 GCTATGCTTAGGGTGGCACTT 60.409 52.381 18.45 8.92 41.39 3.16
21 22 0.181350 GCTATGCTTAGGGTGGCACT 59.819 55.000 18.45 0.40 41.39 4.40
22 23 0.107214 TGCTATGCTTAGGGTGGCAC 60.107 55.000 9.70 9.70 41.39 5.01
23 24 0.623194 TTGCTATGCTTAGGGTGGCA 59.377 50.000 8.57 0.00 42.80 4.92
24 25 1.312815 CTTGCTATGCTTAGGGTGGC 58.687 55.000 8.57 0.00 0.00 5.01
25 26 2.565841 GACTTGCTATGCTTAGGGTGG 58.434 52.381 8.57 0.00 0.00 4.61
26 27 2.092968 TGGACTTGCTATGCTTAGGGTG 60.093 50.000 8.57 0.00 0.00 4.61
27 28 2.092914 GTGGACTTGCTATGCTTAGGGT 60.093 50.000 8.57 0.00 0.00 4.34
28 29 2.171448 AGTGGACTTGCTATGCTTAGGG 59.829 50.000 8.57 0.00 0.00 3.53
29 30 3.550437 AGTGGACTTGCTATGCTTAGG 57.450 47.619 8.57 0.00 0.00 2.69
30 31 5.292101 GTGTTAGTGGACTTGCTATGCTTAG 59.708 44.000 2.28 2.28 0.00 2.18
31 32 5.175859 GTGTTAGTGGACTTGCTATGCTTA 58.824 41.667 0.00 0.00 0.00 3.09
32 33 4.003648 GTGTTAGTGGACTTGCTATGCTT 58.996 43.478 0.00 0.00 0.00 3.91
33 34 3.600388 GTGTTAGTGGACTTGCTATGCT 58.400 45.455 0.00 0.00 0.00 3.79
34 35 2.678336 GGTGTTAGTGGACTTGCTATGC 59.322 50.000 0.00 0.00 0.00 3.14
35 36 2.930040 CGGTGTTAGTGGACTTGCTATG 59.070 50.000 0.00 0.00 0.00 2.23
36 37 2.565834 ACGGTGTTAGTGGACTTGCTAT 59.434 45.455 0.00 0.00 0.00 2.97
37 38 1.965643 ACGGTGTTAGTGGACTTGCTA 59.034 47.619 0.00 0.00 0.00 3.49
38 39 0.756903 ACGGTGTTAGTGGACTTGCT 59.243 50.000 0.00 0.00 0.00 3.91
39 40 2.064014 GTACGGTGTTAGTGGACTTGC 58.936 52.381 0.00 0.00 0.00 4.01
40 41 3.243636 ACAGTACGGTGTTAGTGGACTTG 60.244 47.826 0.00 0.00 0.00 3.16
41 42 2.961062 ACAGTACGGTGTTAGTGGACTT 59.039 45.455 0.00 0.00 0.00 3.01
42 43 2.590821 ACAGTACGGTGTTAGTGGACT 58.409 47.619 0.00 0.00 0.00 3.85
43 44 4.503741 TTACAGTACGGTGTTAGTGGAC 57.496 45.455 9.06 0.00 31.46 4.02
44 45 4.766373 TGATTACAGTACGGTGTTAGTGGA 59.234 41.667 9.06 0.00 31.46 4.02
45 46 5.063180 TGATTACAGTACGGTGTTAGTGG 57.937 43.478 9.06 0.00 31.46 4.00
46 47 6.421501 TGTTTGATTACAGTACGGTGTTAGTG 59.578 38.462 9.06 0.00 31.46 2.74
47 48 6.514947 TGTTTGATTACAGTACGGTGTTAGT 58.485 36.000 9.06 0.00 31.46 2.24
48 49 7.410800 TTGTTTGATTACAGTACGGTGTTAG 57.589 36.000 9.06 0.00 31.46 2.34
49 50 7.966246 ATTGTTTGATTACAGTACGGTGTTA 57.034 32.000 9.06 0.00 31.46 2.41
50 51 6.870971 ATTGTTTGATTACAGTACGGTGTT 57.129 33.333 9.06 0.00 31.46 3.32
51 52 6.870971 AATTGTTTGATTACAGTACGGTGT 57.129 33.333 9.06 0.77 34.21 4.16
52 53 9.485591 GATAAATTGTTTGATTACAGTACGGTG 57.514 33.333 9.06 0.00 0.00 4.94
53 54 8.671028 GGATAAATTGTTTGATTACAGTACGGT 58.329 33.333 3.62 3.62 0.00 4.83
54 55 8.670135 TGGATAAATTGTTTGATTACAGTACGG 58.330 33.333 0.00 0.00 0.00 4.02
55 56 9.485591 GTGGATAAATTGTTTGATTACAGTACG 57.514 33.333 0.00 0.00 0.00 3.67
56 57 9.783256 GGTGGATAAATTGTTTGATTACAGTAC 57.217 33.333 0.00 0.00 0.00 2.73
57 58 8.670135 CGGTGGATAAATTGTTTGATTACAGTA 58.330 33.333 0.00 0.00 0.00 2.74
58 59 7.392113 TCGGTGGATAAATTGTTTGATTACAGT 59.608 33.333 0.00 0.00 0.00 3.55
59 60 7.757526 TCGGTGGATAAATTGTTTGATTACAG 58.242 34.615 0.00 0.00 0.00 2.74
60 61 7.148154 CCTCGGTGGATAAATTGTTTGATTACA 60.148 37.037 0.00 0.00 38.35 2.41
61 62 7.193595 CCTCGGTGGATAAATTGTTTGATTAC 58.806 38.462 0.00 0.00 38.35 1.89
62 63 6.320164 CCCTCGGTGGATAAATTGTTTGATTA 59.680 38.462 0.00 0.00 38.35 1.75
63 64 5.127031 CCCTCGGTGGATAAATTGTTTGATT 59.873 40.000 0.00 0.00 38.35 2.57
64 65 4.644685 CCCTCGGTGGATAAATTGTTTGAT 59.355 41.667 0.00 0.00 38.35 2.57
65 66 4.013728 CCCTCGGTGGATAAATTGTTTGA 58.986 43.478 0.00 0.00 38.35 2.69
66 67 3.428862 GCCCTCGGTGGATAAATTGTTTG 60.429 47.826 0.00 0.00 38.35 2.93
67 68 2.758423 GCCCTCGGTGGATAAATTGTTT 59.242 45.455 0.00 0.00 38.35 2.83
68 69 2.025321 AGCCCTCGGTGGATAAATTGTT 60.025 45.455 0.00 0.00 38.35 2.83
69 70 1.564348 AGCCCTCGGTGGATAAATTGT 59.436 47.619 0.00 0.00 38.35 2.71
70 71 2.348411 AGCCCTCGGTGGATAAATTG 57.652 50.000 0.00 0.00 38.35 2.32
71 72 2.654863 CAAGCCCTCGGTGGATAAATT 58.345 47.619 0.00 0.00 38.35 1.82
72 73 1.133792 CCAAGCCCTCGGTGGATAAAT 60.134 52.381 0.00 0.00 38.35 1.40
73 74 0.254747 CCAAGCCCTCGGTGGATAAA 59.745 55.000 0.00 0.00 38.35 1.40
74 75 1.912220 CCAAGCCCTCGGTGGATAA 59.088 57.895 0.00 0.00 38.35 1.75
75 76 2.742116 GCCAAGCCCTCGGTGGATA 61.742 63.158 0.00 0.00 38.35 2.59
76 77 4.115199 GCCAAGCCCTCGGTGGAT 62.115 66.667 0.00 0.00 38.35 3.41
79 80 4.641645 TGTGCCAAGCCCTCGGTG 62.642 66.667 0.00 0.00 0.00 4.94
80 81 4.643387 GTGTGCCAAGCCCTCGGT 62.643 66.667 0.00 0.00 0.00 4.69
112 113 4.351054 GTCTGGGGTGGTGGCTGG 62.351 72.222 0.00 0.00 0.00 4.85
113 114 4.351054 GGTCTGGGGTGGTGGCTG 62.351 72.222 0.00 0.00 0.00 4.85
116 117 3.650950 CTGGGTCTGGGGTGGTGG 61.651 72.222 0.00 0.00 0.00 4.61
117 118 4.351054 GCTGGGTCTGGGGTGGTG 62.351 72.222 0.00 0.00 0.00 4.17
118 119 3.188355 TAGCTGGGTCTGGGGTGGT 62.188 63.158 0.00 0.00 0.00 4.16
119 120 2.285368 TAGCTGGGTCTGGGGTGG 60.285 66.667 0.00 0.00 0.00 4.61
120 121 3.036429 GCTAGCTGGGTCTGGGGTG 62.036 68.421 7.70 0.00 0.00 4.61
121 122 2.689034 GCTAGCTGGGTCTGGGGT 60.689 66.667 7.70 0.00 0.00 4.95
122 123 2.688666 TGCTAGCTGGGTCTGGGG 60.689 66.667 17.23 0.00 0.00 4.96
123 124 2.906458 CTGCTAGCTGGGTCTGGG 59.094 66.667 17.23 0.00 0.00 4.45
124 125 2.188994 GCTGCTAGCTGGGTCTGG 59.811 66.667 21.46 1.55 38.45 3.86
125 126 1.153409 CTGCTGCTAGCTGGGTCTG 60.153 63.158 21.46 6.90 42.97 3.51
126 127 1.305633 TCTGCTGCTAGCTGGGTCT 60.306 57.895 21.46 0.00 42.97 3.85
127 128 1.153469 GTCTGCTGCTAGCTGGGTC 60.153 63.158 21.46 7.17 42.97 4.46
128 129 2.664081 GGTCTGCTGCTAGCTGGGT 61.664 63.158 21.46 0.00 42.97 4.51
129 130 1.980784 ATGGTCTGCTGCTAGCTGGG 61.981 60.000 21.46 10.46 42.97 4.45
130 131 0.532417 GATGGTCTGCTGCTAGCTGG 60.532 60.000 21.46 12.77 42.97 4.85
131 132 0.177373 TGATGGTCTGCTGCTAGCTG 59.823 55.000 17.23 16.92 42.97 4.24
132 133 0.907486 TTGATGGTCTGCTGCTAGCT 59.093 50.000 17.23 0.00 42.97 3.32
133 134 1.297664 CTTGATGGTCTGCTGCTAGC 58.702 55.000 8.10 8.10 42.82 3.42
134 135 1.950828 CCTTGATGGTCTGCTGCTAG 58.049 55.000 0.00 0.00 0.00 3.42
143 144 4.603511 GCATGTTGCCACCTTGATGGTC 62.604 54.545 0.00 0.00 40.69 4.02
144 145 2.772192 GCATGTTGCCACCTTGATGGT 61.772 52.381 0.00 0.00 41.49 3.55
145 146 0.108520 GCATGTTGCCACCTTGATGG 60.109 55.000 0.00 0.00 43.26 3.51
146 147 3.429043 GCATGTTGCCACCTTGATG 57.571 52.632 0.00 0.00 37.42 3.07
158 159 4.992740 TTGCAGGCCCGGCATGTT 62.993 61.111 24.17 0.00 42.60 2.71
161 162 4.764771 ATGTTGCAGGCCCGGCAT 62.765 61.111 19.28 0.00 41.58 4.40
164 165 3.443045 GACATGTTGCAGGCCCGG 61.443 66.667 0.00 0.00 0.00 5.73
165 166 3.803082 CGACATGTTGCAGGCCCG 61.803 66.667 0.00 0.00 0.00 6.13
166 167 2.200170 GAACGACATGTTGCAGGCCC 62.200 60.000 13.30 0.00 42.09 5.80
167 168 1.210155 GAACGACATGTTGCAGGCC 59.790 57.895 13.30 0.00 42.09 5.19
168 169 0.385974 GTGAACGACATGTTGCAGGC 60.386 55.000 13.30 1.06 42.09 4.85
169 170 0.238289 GGTGAACGACATGTTGCAGG 59.762 55.000 13.30 0.00 42.09 4.85
170 171 0.943673 TGGTGAACGACATGTTGCAG 59.056 50.000 13.30 1.78 42.09 4.41
171 172 0.943673 CTGGTGAACGACATGTTGCA 59.056 50.000 13.30 1.12 42.09 4.08
172 173 0.385974 GCTGGTGAACGACATGTTGC 60.386 55.000 13.30 0.00 42.09 4.17
173 174 0.238289 GGCTGGTGAACGACATGTTG 59.762 55.000 11.78 11.78 42.09 3.33
174 175 0.889186 GGGCTGGTGAACGACATGTT 60.889 55.000 0.00 0.00 45.61 2.71
175 176 1.302511 GGGCTGGTGAACGACATGT 60.303 57.895 0.00 0.00 0.00 3.21
176 177 1.302431 TGGGCTGGTGAACGACATG 60.302 57.895 0.00 0.00 0.00 3.21
177 178 1.302511 GTGGGCTGGTGAACGACAT 60.303 57.895 0.00 0.00 0.00 3.06
178 179 2.110213 GTGGGCTGGTGAACGACA 59.890 61.111 0.00 0.00 0.00 4.35
179 180 1.961277 CTGTGGGCTGGTGAACGAC 60.961 63.158 0.00 0.00 0.00 4.34
180 181 2.425592 CTGTGGGCTGGTGAACGA 59.574 61.111 0.00 0.00 0.00 3.85
181 182 2.669569 CCTGTGGGCTGGTGAACG 60.670 66.667 0.00 0.00 0.00 3.95
182 183 1.600916 GACCTGTGGGCTGGTGAAC 60.601 63.158 0.96 0.00 45.29 3.18
183 184 2.055689 CTGACCTGTGGGCTGGTGAA 62.056 60.000 0.96 0.00 45.29 3.18
184 185 2.447572 TGACCTGTGGGCTGGTGA 60.448 61.111 0.96 0.00 45.29 4.02
185 186 2.033141 CTGACCTGTGGGCTGGTG 59.967 66.667 0.96 0.00 45.29 4.17
187 188 2.348998 GACTGACCTGTGGGCTGG 59.651 66.667 1.58 0.00 39.33 4.85
188 189 1.004080 CTGACTGACCTGTGGGCTG 60.004 63.158 0.00 0.00 35.63 4.85
189 190 2.888447 GCTGACTGACCTGTGGGCT 61.888 63.158 0.00 0.00 35.63 5.19
190 191 2.359230 GCTGACTGACCTGTGGGC 60.359 66.667 0.00 0.00 35.63 5.36
191 192 3.476386 AGCTGACTGACCTGTGGG 58.524 61.111 0.00 0.00 38.88 4.61
201 202 4.339814 GGAGTACAATAGTAGCAGCTGACT 59.660 45.833 20.43 15.61 0.00 3.41
202 203 4.500035 GGGAGTACAATAGTAGCAGCTGAC 60.500 50.000 20.43 7.80 0.00 3.51
203 204 3.637229 GGGAGTACAATAGTAGCAGCTGA 59.363 47.826 20.43 0.00 0.00 4.26
204 205 3.639094 AGGGAGTACAATAGTAGCAGCTG 59.361 47.826 10.11 10.11 0.00 4.24
205 206 3.892588 GAGGGAGTACAATAGTAGCAGCT 59.107 47.826 0.00 0.00 0.00 4.24
206 207 3.006003 GGAGGGAGTACAATAGTAGCAGC 59.994 52.174 0.00 0.00 0.00 5.25
207 208 3.253677 CGGAGGGAGTACAATAGTAGCAG 59.746 52.174 0.00 0.00 0.00 4.24
208 209 3.220110 CGGAGGGAGTACAATAGTAGCA 58.780 50.000 0.00 0.00 0.00 3.49
209 210 3.220940 ACGGAGGGAGTACAATAGTAGC 58.779 50.000 0.00 0.00 0.00 3.58
210 211 4.277921 GGAACGGAGGGAGTACAATAGTAG 59.722 50.000 0.00 0.00 0.00 2.57
211 212 4.210331 GGAACGGAGGGAGTACAATAGTA 58.790 47.826 0.00 0.00 0.00 1.82
212 213 3.029570 GGAACGGAGGGAGTACAATAGT 58.970 50.000 0.00 0.00 0.00 2.12
213 214 3.729862 GGAACGGAGGGAGTACAATAG 57.270 52.381 0.00 0.00 0.00 1.73
229 230 8.718734 ACAAATCTAAGACAAGTAATTCGGAAC 58.281 33.333 0.00 0.00 0.00 3.62
230 231 8.717821 CACAAATCTAAGACAAGTAATTCGGAA 58.282 33.333 0.00 0.00 0.00 4.30
231 232 7.876068 ACACAAATCTAAGACAAGTAATTCGGA 59.124 33.333 0.00 0.00 0.00 4.55
232 233 8.029642 ACACAAATCTAAGACAAGTAATTCGG 57.970 34.615 0.00 0.00 0.00 4.30
239 240 9.862371 CTGTATCTACACAAATCTAAGACAAGT 57.138 33.333 0.00 0.00 31.93 3.16
262 263 8.700051 ACTCATTTTAGTGCTAGATACATCTGT 58.300 33.333 1.88 0.00 37.76 3.41
263 264 9.190858 GACTCATTTTAGTGCTAGATACATCTG 57.809 37.037 1.88 0.00 37.76 2.90
264 265 9.142014 AGACTCATTTTAGTGCTAGATACATCT 57.858 33.333 0.00 0.00 40.86 2.90
267 268 9.628500 TCTAGACTCATTTTAGTGCTAGATACA 57.372 33.333 0.00 0.00 34.69 2.29
271 272 9.628500 TGTATCTAGACTCATTTTAGTGCTAGA 57.372 33.333 0.00 0.00 38.76 2.43
274 275 8.364142 GGATGTATCTAGACTCATTTTAGTGCT 58.636 37.037 11.25 0.00 0.00 4.40
275 276 7.327275 CGGATGTATCTAGACTCATTTTAGTGC 59.673 40.741 11.25 0.00 0.00 4.40
276 277 8.353684 ACGGATGTATCTAGACTCATTTTAGTG 58.646 37.037 11.25 3.85 0.00 2.74
277 278 8.466617 ACGGATGTATCTAGACTCATTTTAGT 57.533 34.615 11.25 7.70 0.00 2.24
294 295 9.878667 TCTTGAATTTGTTTAGATACGGATGTA 57.121 29.630 0.00 0.00 34.45 2.29
295 296 8.665685 GTCTTGAATTTGTTTAGATACGGATGT 58.334 33.333 0.00 0.00 0.00 3.06
296 297 8.664798 TGTCTTGAATTTGTTTAGATACGGATG 58.335 33.333 0.00 0.00 0.00 3.51
297 298 8.786826 TGTCTTGAATTTGTTTAGATACGGAT 57.213 30.769 0.00 0.00 0.00 4.18
298 299 8.610248 TTGTCTTGAATTTGTTTAGATACGGA 57.390 30.769 0.00 0.00 0.00 4.69
299 300 8.504005 ACTTGTCTTGAATTTGTTTAGATACGG 58.496 33.333 0.00 0.00 0.00 4.02
306 307 9.757227 CCCAATTACTTGTCTTGAATTTGTTTA 57.243 29.630 0.00 0.00 0.00 2.01
307 308 8.482128 TCCCAATTACTTGTCTTGAATTTGTTT 58.518 29.630 0.00 0.00 0.00 2.83
308 309 8.017418 TCCCAATTACTTGTCTTGAATTTGTT 57.983 30.769 0.00 0.00 0.00 2.83
309 310 7.595819 TCCCAATTACTTGTCTTGAATTTGT 57.404 32.000 0.00 0.00 0.00 2.83
310 311 7.925483 TGTTCCCAATTACTTGTCTTGAATTTG 59.075 33.333 0.00 0.00 0.00 2.32
311 312 8.017418 TGTTCCCAATTACTTGTCTTGAATTT 57.983 30.769 0.00 0.00 0.00 1.82
312 313 7.505585 TCTGTTCCCAATTACTTGTCTTGAATT 59.494 33.333 0.00 0.00 0.00 2.17
313 314 7.004086 TCTGTTCCCAATTACTTGTCTTGAAT 58.996 34.615 0.00 0.00 0.00 2.57
314 315 6.361433 TCTGTTCCCAATTACTTGTCTTGAA 58.639 36.000 0.00 0.00 0.00 2.69
315 316 5.935945 TCTGTTCCCAATTACTTGTCTTGA 58.064 37.500 0.00 0.00 0.00 3.02
316 317 5.182001 CCTCTGTTCCCAATTACTTGTCTTG 59.818 44.000 0.00 0.00 0.00 3.02
317 318 5.316987 CCTCTGTTCCCAATTACTTGTCTT 58.683 41.667 0.00 0.00 0.00 3.01
318 319 4.263506 CCCTCTGTTCCCAATTACTTGTCT 60.264 45.833 0.00 0.00 0.00 3.41
319 320 4.010349 CCCTCTGTTCCCAATTACTTGTC 58.990 47.826 0.00 0.00 0.00 3.18
320 321 3.655777 TCCCTCTGTTCCCAATTACTTGT 59.344 43.478 0.00 0.00 0.00 3.16
321 322 4.263506 ACTCCCTCTGTTCCCAATTACTTG 60.264 45.833 0.00 0.00 0.00 3.16
322 323 3.916989 ACTCCCTCTGTTCCCAATTACTT 59.083 43.478 0.00 0.00 0.00 2.24
323 324 3.532102 ACTCCCTCTGTTCCCAATTACT 58.468 45.455 0.00 0.00 0.00 2.24
324 325 4.470304 AGTACTCCCTCTGTTCCCAATTAC 59.530 45.833 0.00 0.00 0.00 1.89
325 326 4.695606 AGTACTCCCTCTGTTCCCAATTA 58.304 43.478 0.00 0.00 0.00 1.40
326 327 3.519913 GAGTACTCCCTCTGTTCCCAATT 59.480 47.826 12.13 0.00 0.00 2.32
327 328 3.108376 GAGTACTCCCTCTGTTCCCAAT 58.892 50.000 12.13 0.00 0.00 3.16
328 329 2.537143 GAGTACTCCCTCTGTTCCCAA 58.463 52.381 12.13 0.00 0.00 4.12
329 330 1.273098 GGAGTACTCCCTCTGTTCCCA 60.273 57.143 28.87 0.00 43.94 4.37
330 331 1.487300 GGAGTACTCCCTCTGTTCCC 58.513 60.000 28.87 2.34 43.94 3.97
341 342 5.842907 TGTGCACATGTATATGGAGTACTC 58.157 41.667 17.42 14.87 38.66 2.59
342 343 5.869649 TGTGCACATGTATATGGAGTACT 57.130 39.130 17.42 0.00 38.66 2.73
343 344 5.815222 TGTTGTGCACATGTATATGGAGTAC 59.185 40.000 22.39 11.27 38.66 2.73
344 345 5.815222 GTGTTGTGCACATGTATATGGAGTA 59.185 40.000 22.39 0.00 46.91 2.59
345 346 4.635765 GTGTTGTGCACATGTATATGGAGT 59.364 41.667 22.39 0.00 46.91 3.85
346 347 5.160699 GTGTTGTGCACATGTATATGGAG 57.839 43.478 22.39 0.00 46.91 3.86
361 362 1.433064 GTGGGTGTGCTGTGTTGTG 59.567 57.895 0.00 0.00 0.00 3.33
367 368 2.028484 CGTACGTGGGTGTGCTGT 59.972 61.111 7.22 0.00 0.00 4.40
370 371 2.735857 GACCGTACGTGGGTGTGC 60.736 66.667 16.67 0.76 38.07 4.57
390 391 2.666190 CCACGGTCCAGTGCACTG 60.666 66.667 35.15 35.15 43.40 3.66
391 392 4.626081 GCCACGGTCCAGTGCACT 62.626 66.667 15.25 15.25 40.59 4.40
413 415 7.093988 TGGGTTGTACCATGATAAAATTGTGAG 60.094 37.037 0.00 0.00 41.02 3.51
439 441 6.551227 ACTGCCAGAGAAAAAGGAAAAACTAT 59.449 34.615 0.00 0.00 0.00 2.12
491 493 2.363018 TCTGGAGAGACTGGCCGG 60.363 66.667 11.02 11.02 0.00 6.13
499 501 0.324183 CAGGAGGCTGTCTGGAGAGA 60.324 60.000 0.00 0.00 0.00 3.10
555 610 1.172180 GGATGGTGTGGTGTGGTGTG 61.172 60.000 0.00 0.00 0.00 3.82
556 611 1.150536 GGATGGTGTGGTGTGGTGT 59.849 57.895 0.00 0.00 0.00 4.16
557 612 0.690192 TAGGATGGTGTGGTGTGGTG 59.310 55.000 0.00 0.00 0.00 4.17
558 613 1.073284 GTTAGGATGGTGTGGTGTGGT 59.927 52.381 0.00 0.00 0.00 4.16
559 614 1.821216 GTTAGGATGGTGTGGTGTGG 58.179 55.000 0.00 0.00 0.00 4.17
560 615 1.001520 TCGTTAGGATGGTGTGGTGTG 59.998 52.381 0.00 0.00 0.00 3.82
561 616 1.275291 CTCGTTAGGATGGTGTGGTGT 59.725 52.381 0.00 0.00 0.00 4.16
562 617 1.548719 TCTCGTTAGGATGGTGTGGTG 59.451 52.381 0.00 0.00 0.00 4.17
563 618 1.825474 CTCTCGTTAGGATGGTGTGGT 59.175 52.381 0.00 0.00 0.00 4.16
564 619 2.099921 CTCTCTCGTTAGGATGGTGTGG 59.900 54.545 0.00 0.00 0.00 4.17
565 620 2.480416 GCTCTCTCGTTAGGATGGTGTG 60.480 54.545 0.00 0.00 0.00 3.82
566 621 1.751924 GCTCTCTCGTTAGGATGGTGT 59.248 52.381 0.00 0.00 0.00 4.16
567 622 1.268794 CGCTCTCTCGTTAGGATGGTG 60.269 57.143 0.00 0.00 0.00 4.17
568 623 1.025812 CGCTCTCTCGTTAGGATGGT 58.974 55.000 0.00 0.00 0.00 3.55
569 624 1.025812 ACGCTCTCTCGTTAGGATGG 58.974 55.000 0.00 0.00 40.07 3.51
570 625 1.402259 ACACGCTCTCTCGTTAGGATG 59.598 52.381 0.00 0.00 41.21 3.51
571 626 1.402259 CACACGCTCTCTCGTTAGGAT 59.598 52.381 0.00 0.00 41.21 3.24
584 639 2.063266 CACGGTTATTACACACACGCT 58.937 47.619 0.00 0.00 0.00 5.07
586 641 1.793532 TGCACGGTTATTACACACACG 59.206 47.619 0.00 0.00 0.00 4.49
596 666 1.066716 ACACGGTACATGCACGGTTAT 60.067 47.619 6.54 0.00 30.38 1.89
666 736 4.729918 CACCCTGTCTGCCCTGCC 62.730 72.222 0.00 0.00 0.00 4.85
759 860 3.380954 GGTTCTAACTTCTACTCCTCCGG 59.619 52.174 0.00 0.00 0.00 5.14
760 861 3.065095 CGGTTCTAACTTCTACTCCTCCG 59.935 52.174 0.00 0.00 0.00 4.63
761 862 4.268359 TCGGTTCTAACTTCTACTCCTCC 58.732 47.826 0.00 0.00 0.00 4.30
762 863 5.639757 GTTCGGTTCTAACTTCTACTCCTC 58.360 45.833 0.00 0.00 0.00 3.71
763 864 4.155644 CGTTCGGTTCTAACTTCTACTCCT 59.844 45.833 0.00 0.00 0.00 3.69
764 865 4.154918 TCGTTCGGTTCTAACTTCTACTCC 59.845 45.833 0.00 0.00 0.00 3.85
765 866 5.085390 GTCGTTCGGTTCTAACTTCTACTC 58.915 45.833 0.00 0.00 0.00 2.59
806 907 0.322906 GAAGAAGCCACCCCTCCTTG 60.323 60.000 0.00 0.00 0.00 3.61
917 1030 2.788191 GAAGAGAGCGTGTGTGGGGG 62.788 65.000 0.00 0.00 0.00 5.40
948 1070 1.213926 CTTTGGGAGAATGGAGGGAGG 59.786 57.143 0.00 0.00 0.00 4.30
951 1073 3.359950 CTTTCTTTGGGAGAATGGAGGG 58.640 50.000 0.00 0.00 43.65 4.30
978 1100 0.820891 CTGCAGAGCCACCACTGTTT 60.821 55.000 8.42 0.00 36.62 2.83
979 1101 1.228063 CTGCAGAGCCACCACTGTT 60.228 57.895 8.42 0.00 36.62 3.16
1046 1180 1.132881 GGAGGGATGGATGGAGAGAGT 60.133 57.143 0.00 0.00 0.00 3.24
1047 1181 1.643310 GGAGGGATGGATGGAGAGAG 58.357 60.000 0.00 0.00 0.00 3.20
1048 1182 0.192064 GGGAGGGATGGATGGAGAGA 59.808 60.000 0.00 0.00 0.00 3.10
1066 1200 1.303643 GAAACAGAGGGTGCCAGGG 60.304 63.158 0.00 0.00 0.00 4.45
1068 1202 0.109342 ACAGAAACAGAGGGTGCCAG 59.891 55.000 0.00 0.00 0.00 4.85
1073 1207 4.207955 GGAAAGAAACAGAAACAGAGGGT 58.792 43.478 0.00 0.00 0.00 4.34
1109 1243 1.066908 CCACAAATCCACACACCACAC 59.933 52.381 0.00 0.00 0.00 3.82
1137 1271 3.554934 TCAAGCACCAAGAACAGTTGAT 58.445 40.909 0.00 0.00 0.00 2.57
1138 1272 2.945008 CTCAAGCACCAAGAACAGTTGA 59.055 45.455 0.00 0.00 0.00 3.18
1154 1291 2.094100 TATGAGCTCCCTCCCTCAAG 57.906 55.000 12.15 0.00 41.04 3.02
1155 1292 2.505819 GTTTATGAGCTCCCTCCCTCAA 59.494 50.000 12.15 0.00 41.04 3.02
1156 1293 2.119495 GTTTATGAGCTCCCTCCCTCA 58.881 52.381 12.15 0.00 41.81 3.86
1157 1294 2.103941 CAGTTTATGAGCTCCCTCCCTC 59.896 54.545 12.15 0.00 37.29 4.30
1158 1295 2.122768 CAGTTTATGAGCTCCCTCCCT 58.877 52.381 12.15 0.00 37.29 4.20
1197 1346 2.046507 AGGAGGCGAGCAAAGCAG 60.047 61.111 0.00 0.00 36.08 4.24
1297 1454 2.822255 GGGCGTGTGTGTGTGTGT 60.822 61.111 0.00 0.00 0.00 3.72
1298 1455 2.821810 TGGGCGTGTGTGTGTGTG 60.822 61.111 0.00 0.00 0.00 3.82
1299 1456 2.513666 CTGGGCGTGTGTGTGTGT 60.514 61.111 0.00 0.00 0.00 3.72
1300 1457 3.952675 GCTGGGCGTGTGTGTGTG 61.953 66.667 0.00 0.00 0.00 3.82
1318 1475 2.566833 TTGGAAGGTGATGGACAGTG 57.433 50.000 0.00 0.00 0.00 3.66
1329 1486 5.045651 GGATTGGATTGGAAATTTGGAAGGT 60.046 40.000 0.00 0.00 0.00 3.50
1332 1489 6.445451 TTGGATTGGATTGGAAATTTGGAA 57.555 33.333 0.00 0.00 0.00 3.53
1333 1490 6.352910 GGATTGGATTGGATTGGAAATTTGGA 60.353 38.462 0.00 0.00 0.00 3.53
1334 1491 5.824097 GGATTGGATTGGATTGGAAATTTGG 59.176 40.000 0.00 0.00 0.00 3.28
1335 1492 6.655930 AGGATTGGATTGGATTGGAAATTTG 58.344 36.000 0.00 0.00 0.00 2.32
1336 1493 6.126681 GGAGGATTGGATTGGATTGGAAATTT 60.127 38.462 0.00 0.00 0.00 1.82
1337 1494 5.367644 GGAGGATTGGATTGGATTGGAAATT 59.632 40.000 0.00 0.00 0.00 1.82
1338 1495 4.903649 GGAGGATTGGATTGGATTGGAAAT 59.096 41.667 0.00 0.00 0.00 2.17
1339 1496 4.264759 TGGAGGATTGGATTGGATTGGAAA 60.265 41.667 0.00 0.00 0.00 3.13
1436 1600 6.151691 ACATTTATAACAACAACAGCAGCAG 58.848 36.000 0.00 0.00 0.00 4.24
1456 1620 6.261826 GCAGAGGAGATGCTTACATTTACATT 59.738 38.462 0.00 0.00 40.59 2.71
1457 1621 5.762218 GCAGAGGAGATGCTTACATTTACAT 59.238 40.000 0.00 0.00 40.59 2.29
1463 1659 1.419387 GGGCAGAGGAGATGCTTACAT 59.581 52.381 0.00 0.00 43.35 2.29
1470 1666 3.853355 ATTAACAGGGCAGAGGAGATG 57.147 47.619 0.00 0.00 0.00 2.90
1482 1678 2.952310 GCCTCAGGCCTTTATTAACAGG 59.048 50.000 3.37 0.00 44.06 4.00
1522 1718 0.172803 CTTTCAGGCCAGATGCAAGC 59.827 55.000 5.01 0.00 43.89 4.01
1599 1796 0.466189 AATTAGCATGGCCCTGACCG 60.466 55.000 12.80 0.00 0.00 4.79
1624 1821 4.848357 ACTACATCAATTTGGTCTCTGGG 58.152 43.478 0.00 0.00 0.00 4.45
1625 1822 7.106239 AGTTACTACATCAATTTGGTCTCTGG 58.894 38.462 0.00 0.00 0.00 3.86
1654 1853 9.391006 GGATTTACTCACAACATCCATAACTAA 57.609 33.333 0.00 0.00 34.58 2.24
1685 1884 8.827677 CCTGTTATCCACTAACTAGCAAATTAC 58.172 37.037 0.00 0.00 40.40 1.89
1691 1890 4.404715 GGACCTGTTATCCACTAACTAGCA 59.595 45.833 0.00 0.00 40.40 3.49
1692 1891 4.404715 TGGACCTGTTATCCACTAACTAGC 59.595 45.833 0.00 0.00 41.47 3.42
1693 1892 6.540438 TTGGACCTGTTATCCACTAACTAG 57.460 41.667 0.00 0.00 46.09 2.57
1694 1893 6.938698 TTTGGACCTGTTATCCACTAACTA 57.061 37.500 0.00 0.00 46.09 2.24
1695 1894 5.836024 TTTGGACCTGTTATCCACTAACT 57.164 39.130 0.00 0.00 46.09 2.24
1696 1895 6.002082 AGTTTTGGACCTGTTATCCACTAAC 58.998 40.000 8.91 8.91 46.09 2.34
1697 1896 6.183361 TGAGTTTTGGACCTGTTATCCACTAA 60.183 38.462 0.00 0.00 46.09 2.24
1698 1897 5.308497 TGAGTTTTGGACCTGTTATCCACTA 59.692 40.000 0.00 0.00 46.09 2.74
1699 1898 4.104102 TGAGTTTTGGACCTGTTATCCACT 59.896 41.667 0.00 0.00 46.09 4.00
1700 1899 4.215613 GTGAGTTTTGGACCTGTTATCCAC 59.784 45.833 0.00 0.00 46.09 4.02
1704 1903 3.499745 GGGGTGAGTTTTGGACCTGTTAT 60.500 47.826 0.00 0.00 0.00 1.89
1705 1904 2.158579 GGGGTGAGTTTTGGACCTGTTA 60.159 50.000 0.00 0.00 0.00 2.41
1708 1907 0.184933 TGGGGTGAGTTTTGGACCTG 59.815 55.000 0.00 0.00 0.00 4.00
1726 1925 4.274214 CACCTCAGCCATTACATACACATG 59.726 45.833 0.00 0.00 38.21 3.21
1727 1926 4.164030 TCACCTCAGCCATTACATACACAT 59.836 41.667 0.00 0.00 0.00 3.21
1728 1927 3.517500 TCACCTCAGCCATTACATACACA 59.482 43.478 0.00 0.00 0.00 3.72
1729 1928 4.137116 TCACCTCAGCCATTACATACAC 57.863 45.455 0.00 0.00 0.00 2.90
1730 1929 5.125356 CAATCACCTCAGCCATTACATACA 58.875 41.667 0.00 0.00 0.00 2.29
1731 1930 4.023707 GCAATCACCTCAGCCATTACATAC 60.024 45.833 0.00 0.00 0.00 2.39
1738 1937 0.330604 ACAGCAATCACCTCAGCCAT 59.669 50.000 0.00 0.00 0.00 4.40
1740 1939 1.930908 GCACAGCAATCACCTCAGCC 61.931 60.000 0.00 0.00 0.00 4.85
1811 2011 0.395724 GGTTCATCCATCCACCCACC 60.396 60.000 0.00 0.00 35.97 4.61
1812 2012 3.191182 GGTTCATCCATCCACCCAC 57.809 57.895 0.00 0.00 35.97 4.61
1815 2015 0.395724 GTGGGGTTCATCCATCCACC 60.396 60.000 0.00 0.00 40.40 4.61
1816 2016 0.395724 GGTGGGGTTCATCCATCCAC 60.396 60.000 0.00 0.00 43.35 4.02
1817 2017 2.006748 GGTGGGGTTCATCCATCCA 58.993 57.895 0.00 0.00 36.58 3.41
1818 2018 1.230212 GGGTGGGGTTCATCCATCC 59.770 63.158 0.00 0.00 46.98 3.51
1862 2062 4.218200 CACCACCAATTAAGCATCACAAGA 59.782 41.667 0.00 0.00 0.00 3.02
1875 2075 5.562298 AGTACTACTGTTCACCACCAATT 57.438 39.130 0.00 0.00 0.00 2.32
1879 2079 3.497262 GCAAAGTACTACTGTTCACCACC 59.503 47.826 0.00 0.00 0.00 4.61
1882 2082 4.124238 TGTGCAAAGTACTACTGTTCACC 58.876 43.478 6.69 0.00 0.00 4.02
1883 2083 4.809426 ACTGTGCAAAGTACTACTGTTCAC 59.191 41.667 8.09 2.98 0.00 3.18
1887 2087 8.446599 AAAATTACTGTGCAAAGTACTACTGT 57.553 30.769 16.60 3.61 32.39 3.55
1932 2132 4.799564 ATCAGAGAGGAGAGTTCACAAC 57.200 45.455 0.00 0.00 0.00 3.32
1933 2133 5.541868 AGAAATCAGAGAGGAGAGTTCACAA 59.458 40.000 0.00 0.00 40.26 3.33
1952 2153 1.888512 ACGCCTGCAATGAACAGAAAT 59.111 42.857 0.00 0.00 37.32 2.17
2027 2231 0.383949 GGATCAGCGTCTCAGAGTCC 59.616 60.000 0.00 0.00 0.00 3.85
2042 2246 0.103937 CTCTGGTGAGCTTCCGGATC 59.896 60.000 4.15 0.00 39.30 3.36
2104 2308 2.701780 TTGTTGTTGTTGCCGCCGT 61.702 52.632 0.00 0.00 0.00 5.68
2108 2312 0.527385 CCTGGTTGTTGTTGTTGCCG 60.527 55.000 0.00 0.00 0.00 5.69
2109 2313 0.179086 CCCTGGTTGTTGTTGTTGCC 60.179 55.000 0.00 0.00 0.00 4.52
2110 2314 0.809636 GCCCTGGTTGTTGTTGTTGC 60.810 55.000 0.00 0.00 0.00 4.17
2111 2315 0.179086 GGCCCTGGTTGTTGTTGTTG 60.179 55.000 0.00 0.00 0.00 3.33
2112 2316 0.616111 TGGCCCTGGTTGTTGTTGTT 60.616 50.000 0.00 0.00 0.00 2.83
2113 2317 1.000993 TGGCCCTGGTTGTTGTTGT 59.999 52.632 0.00 0.00 0.00 3.32
2156 2363 0.318445 GCTGCTTCTGCTGGTTGTTG 60.318 55.000 0.00 0.00 40.48 3.33
2157 2364 0.752743 TGCTGCTTCTGCTGGTTGTT 60.753 50.000 0.00 0.00 40.48 2.83
2158 2365 1.152902 TGCTGCTTCTGCTGGTTGT 60.153 52.632 0.00 0.00 40.48 3.32
2159 2366 1.579932 CTGCTGCTTCTGCTGGTTG 59.420 57.895 0.00 0.00 40.48 3.77
2160 2367 2.266627 GCTGCTGCTTCTGCTGGTT 61.267 57.895 8.53 0.00 40.48 3.67
2161 2368 2.672307 GCTGCTGCTTCTGCTGGT 60.672 61.111 8.53 0.00 40.48 4.00
2207 2420 0.379669 CGCCATCCTTGCTCACATTC 59.620 55.000 0.00 0.00 0.00 2.67
2239 2452 4.496336 GCTCCTTCTGCCCGCCAT 62.496 66.667 0.00 0.00 0.00 4.40
2273 2486 2.121963 AGGCTCCCAACTCCACCA 60.122 61.111 0.00 0.00 0.00 4.17
2276 2489 1.993653 CATGAGGCTCCCAACTCCA 59.006 57.895 12.86 0.00 32.80 3.86
2277 2490 1.452833 GCATGAGGCTCCCAACTCC 60.453 63.158 12.86 0.00 40.25 3.85
2278 2491 0.747283 CTGCATGAGGCTCCCAACTC 60.747 60.000 12.86 0.00 45.15 3.01
2366 2579 6.124088 TCCTCATCATCATACATATCGTCG 57.876 41.667 0.00 0.00 0.00 5.12
2369 2582 8.358148 TCATCATCCTCATCATCATACATATCG 58.642 37.037 0.00 0.00 0.00 2.92
2399 2612 4.437239 ACTCATCGTCAAACTCATCATCC 58.563 43.478 0.00 0.00 0.00 3.51
2578 2800 2.783135 TCATCTTCTGGTTCTGGTTGC 58.217 47.619 0.00 0.00 0.00 4.17
2644 2866 1.970917 GATGCCGCCAGTGTTCTTCG 61.971 60.000 0.00 0.00 0.00 3.79
2809 3031 2.980233 GGTTGCCGTTCTGCTGCT 60.980 61.111 0.00 0.00 0.00 4.24
2810 3032 2.980233 AGGTTGCCGTTCTGCTGC 60.980 61.111 0.00 0.00 0.00 5.25
2811 3033 0.957395 ATCAGGTTGCCGTTCTGCTG 60.957 55.000 0.00 0.00 0.00 4.41
2812 3034 0.957395 CATCAGGTTGCCGTTCTGCT 60.957 55.000 0.00 0.00 0.00 4.24
2813 3035 1.503542 CATCAGGTTGCCGTTCTGC 59.496 57.895 0.00 0.00 0.00 4.26
2814 3036 1.926511 GCCATCAGGTTGCCGTTCTG 61.927 60.000 0.00 0.00 37.19 3.02
3157 3382 0.672342 GCATCACCAAGCCCATCATC 59.328 55.000 0.00 0.00 0.00 2.92
3158 3383 0.032912 TGCATCACCAAGCCCATCAT 60.033 50.000 0.00 0.00 0.00 2.45
3161 3386 0.682209 GACTGCATCACCAAGCCCAT 60.682 55.000 0.00 0.00 0.00 4.00
3162 3387 1.303561 GACTGCATCACCAAGCCCA 60.304 57.895 0.00 0.00 0.00 5.36
3163 3388 2.401766 CGACTGCATCACCAAGCCC 61.402 63.158 0.00 0.00 0.00 5.19
3165 3390 0.721718 GTACGACTGCATCACCAAGC 59.278 55.000 0.00 0.00 0.00 4.01
3166 3391 2.370281 AGTACGACTGCATCACCAAG 57.630 50.000 0.00 0.00 0.00 3.61
3167 3392 2.823747 AGTAGTACGACTGCATCACCAA 59.176 45.455 7.93 0.00 32.98 3.67
3365 3632 2.584835 TAAACAGCTTGGTCATGGCT 57.415 45.000 0.00 0.00 36.70 4.75
3416 3683 0.687354 AGCACCCCAGTACTGACAAG 59.313 55.000 24.68 11.92 0.00 3.16
3556 3836 9.750783 TCTGTCCTCTGTACTTAATTTACTACT 57.249 33.333 0.00 0.00 0.00 2.57
3575 3855 0.252012 CCAGTCCAGTCCTCTGTCCT 60.252 60.000 0.00 0.00 39.82 3.85
3576 3856 1.261238 CCCAGTCCAGTCCTCTGTCC 61.261 65.000 0.00 0.00 39.82 4.02
3577 3857 1.893919 GCCCAGTCCAGTCCTCTGTC 61.894 65.000 0.00 0.00 39.82 3.51
3598 3878 0.171007 CGGCGTCATGGCTTGAAATT 59.829 50.000 4.47 0.00 42.02 1.82
3603 3883 2.461110 GGTACGGCGTCATGGCTTG 61.461 63.158 19.21 0.00 42.02 4.01
3632 3912 4.709397 CACTGCCCTGGGAAATTGTTTATA 59.291 41.667 19.27 0.00 0.00 0.98
3645 3925 2.034687 CCCAGAACACTGCCCTGG 59.965 66.667 9.35 9.35 45.28 4.45
3685 3965 2.775911 TGGAATCAACTGCTCTCCTG 57.224 50.000 0.00 0.00 0.00 3.86
3748 4043 1.608590 ACAAATCGTTGCTGAACTGGG 59.391 47.619 0.00 0.00 38.39 4.45
3796 4092 2.225467 AGCAGGTCACAGCTTTTTCTC 58.775 47.619 0.00 0.00 35.79 2.87
3810 4106 1.339929 CGCCTTTGGTTTTTAGCAGGT 59.660 47.619 0.00 0.00 0.00 4.00
3849 4145 6.700081 CCAGCATAAACTTTCATCATGAATGG 59.300 38.462 15.71 7.21 36.11 3.16
3850 4146 7.485810 TCCAGCATAAACTTTCATCATGAATG 58.514 34.615 10.94 10.94 36.11 2.67
3851 4147 7.649533 TCCAGCATAAACTTTCATCATGAAT 57.350 32.000 0.00 0.00 36.11 2.57
3852 4148 7.465353 TTCCAGCATAAACTTTCATCATGAA 57.535 32.000 0.00 0.00 34.03 2.57
3900 4196 2.035066 GGGAGCCACATTACAATCATGC 59.965 50.000 0.00 0.00 0.00 4.06
3918 4216 1.355381 ACCAATGTGCTCATGAAGGGA 59.645 47.619 15.34 0.00 34.19 4.20
4033 4331 4.024048 TGCTTTTTCTGAACACCGATCTTC 60.024 41.667 0.00 0.00 0.00 2.87
4040 4338 6.587608 CCTCATATTTGCTTTTTCTGAACACC 59.412 38.462 0.00 0.00 0.00 4.16
4077 4375 6.244275 GCTAACTGCTCGAAAAACAGATAAG 58.756 40.000 10.36 6.36 38.95 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.