Multiple sequence alignment - TraesCS3B01G033100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G033100 chr3B 100.000 4232 0 0 1 4232 16041781 16037550 0.000000e+00 7816.0
1 TraesCS3B01G033100 chr3B 96.240 1649 50 7 2007 3649 25274935 25276577 0.000000e+00 2691.0
2 TraesCS3B01G033100 chr3B 87.921 1217 84 41 800 2009 25273744 25274904 0.000000e+00 1375.0
3 TraesCS3B01G033100 chr3B 97.697 608 13 1 3626 4232 25279416 25280023 0.000000e+00 1044.0
4 TraesCS3B01G033100 chr3B 92.569 471 35 0 2104 2574 25243796 25244266 0.000000e+00 676.0
5 TraesCS3B01G033100 chr3B 90.074 272 21 6 1519 1788 510238378 510238645 8.710000e-92 348.0
6 TraesCS3B01G033100 chr3B 97.315 149 4 0 1108 1256 49142098 49142246 1.950000e-63 254.0
7 TraesCS3B01G033100 chr3B 86.017 236 23 6 1784 2009 25242615 25242850 1.180000e-60 244.0
8 TraesCS3B01G033100 chr3B 75.714 280 22 22 520 754 10958242 10958520 9.680000e-17 99.0
9 TraesCS3B01G033100 chr3B 94.872 39 2 0 611 649 118757856 118757894 1.270000e-05 62.1
10 TraesCS3B01G033100 chr3D 96.199 2236 70 6 2007 4232 11365405 11363175 0.000000e+00 3644.0
11 TraesCS3B01G033100 chr3D 89.661 1238 93 20 779 2009 11366645 11365436 0.000000e+00 1544.0
12 TraesCS3B01G033100 chr3D 94.937 158 8 0 1074 1231 505842094 505842251 9.090000e-62 248.0
13 TraesCS3B01G033100 chr3D 77.170 311 17 26 516 778 480420864 480421168 9.550000e-27 132.0
14 TraesCS3B01G033100 chr3D 82.222 135 6 11 508 624 268520488 268520354 2.690000e-17 100.0
15 TraesCS3B01G033100 chr3D 84.112 107 11 3 673 773 39592335 39592441 9.680000e-17 99.0
16 TraesCS3B01G033100 chr3A 93.782 1978 109 7 2023 3989 25907677 25909651 0.000000e+00 2959.0
17 TraesCS3B01G033100 chr3A 91.452 971 62 15 832 1790 25905984 25906945 0.000000e+00 1314.0
18 TraesCS3B01G033100 chr3A 94.937 237 12 0 3996 4232 25909689 25909925 5.170000e-99 372.0
19 TraesCS3B01G033100 chr5A 86.648 719 76 13 1074 1788 51359218 51359920 0.000000e+00 778.0
20 TraesCS3B01G033100 chr5A 82.759 116 8 6 546 649 537024729 537024614 4.510000e-15 93.5
21 TraesCS3B01G033100 chr2B 87.031 640 63 12 1074 1709 98118449 98117826 0.000000e+00 704.0
22 TraesCS3B01G033100 chr2B 76.491 285 23 18 520 761 767790840 767791123 9.620000e-22 115.0
23 TraesCS3B01G033100 chr2B 93.443 61 4 0 1705 1765 98055324 98055264 1.620000e-14 91.6
24 TraesCS3B01G033100 chr2B 85.882 85 6 2 546 624 358241810 358241894 7.540000e-13 86.1
25 TraesCS3B01G033100 chr2B 95.556 45 1 1 581 624 628111342 628111386 2.110000e-08 71.3
26 TraesCS3B01G033100 chr4A 89.189 333 29 5 1459 1788 308388729 308388401 3.940000e-110 409.0
27 TraesCS3B01G033100 chr4A 97.315 149 4 0 1108 1256 647245335 647245187 1.950000e-63 254.0
28 TraesCS3B01G033100 chr5D 78.471 641 94 32 2639 3248 564760952 564761579 3.090000e-101 379.0
29 TraesCS3B01G033100 chr5D 77.288 295 18 24 516 761 515818724 515818430 1.240000e-25 128.0
30 TraesCS3B01G033100 chr5D 98.246 57 1 0 516 572 41465980 41465924 2.690000e-17 100.0
31 TraesCS3B01G033100 chr6B 87.385 325 35 3 1074 1397 210085738 210085419 6.680000e-98 368.0
32 TraesCS3B01G033100 chr6B 76.296 270 19 18 548 778 690974867 690975130 7.490000e-18 102.0
33 TraesCS3B01G033100 chr6B 77.953 127 13 8 520 640 530507920 530508037 9.820000e-07 65.8
34 TraesCS3B01G033100 chr7D 85.135 148 16 5 515 656 70361689 70361542 3.410000e-31 147.0
35 TraesCS3B01G033100 chr7D 98.246 57 1 0 516 572 161430784 161430728 2.690000e-17 100.0
36 TraesCS3B01G033100 chr5B 77.663 291 32 16 516 778 536594866 536595151 3.410000e-31 147.0
37 TraesCS3B01G033100 chr1D 76.282 312 24 29 516 778 393035284 393034974 2.070000e-23 121.0
38 TraesCS3B01G033100 chr7B 84.746 118 15 3 663 778 120394607 120394723 9.620000e-22 115.0
39 TraesCS3B01G033100 chr2D 76.724 232 20 13 584 782 175971798 175971568 9.680000e-17 99.0
40 TraesCS3B01G033100 chr4B 95.000 60 3 0 515 574 167382945 167383004 1.250000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G033100 chr3B 16037550 16041781 4231 True 7816.000000 7816 100.000000 1 4232 1 chr3B.!!$R1 4231
1 TraesCS3B01G033100 chr3B 25273744 25280023 6279 False 1703.333333 2691 93.952667 800 4232 3 chr3B.!!$F6 3432
2 TraesCS3B01G033100 chr3B 25242615 25244266 1651 False 460.000000 676 89.293000 1784 2574 2 chr3B.!!$F5 790
3 TraesCS3B01G033100 chr3D 11363175 11366645 3470 True 2594.000000 3644 92.930000 779 4232 2 chr3D.!!$R2 3453
4 TraesCS3B01G033100 chr3A 25905984 25909925 3941 False 1548.333333 2959 93.390333 832 4232 3 chr3A.!!$F1 3400
5 TraesCS3B01G033100 chr5A 51359218 51359920 702 False 778.000000 778 86.648000 1074 1788 1 chr5A.!!$F1 714
6 TraesCS3B01G033100 chr2B 98117826 98118449 623 True 704.000000 704 87.031000 1074 1709 1 chr2B.!!$R2 635
7 TraesCS3B01G033100 chr5D 564760952 564761579 627 False 379.000000 379 78.471000 2639 3248 1 chr5D.!!$F1 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.028505 GCTACTAATGCGACGGACGA 59.971 55.000 3.67 0.00 45.77 4.20 F
403 404 0.028770 TGCTAGTGTTTGTTGTGCGC 59.971 50.000 0.00 0.00 0.00 6.09 F
655 656 0.032515 ATTTTCCTAAAGGGGCCCGG 60.033 55.000 18.95 12.85 35.41 5.73 F
1661 1676 0.040351 TCTGACTGGCTGGTAGCTCT 59.960 55.000 0.00 0.00 41.99 4.09 F
1900 2317 1.095228 ACTCACACCACAAAGGCACG 61.095 55.000 0.00 0.00 43.14 5.34 F
2188 3601 1.565759 CCAACCAGGGATTCTGATGGA 59.434 52.381 1.43 0.00 45.26 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1568 1583 0.036164 TGTGGGTGCAGCGAATTACT 59.964 50.000 10.24 0.00 0.00 2.24 R
1596 1611 1.109323 AGCAAGTTTGAGGGCCACAC 61.109 55.000 6.18 0.00 0.00 3.82 R
1765 1782 1.160137 GTGCTCTTCACACATGACCC 58.840 55.000 0.00 0.00 44.98 4.46 R
2702 4123 1.003003 TCCACGAATGCCATCAGTTGA 59.997 47.619 0.00 0.00 0.00 3.18 R
2825 4259 1.137086 CAGGAATGACGGTACCTCCAG 59.863 57.143 17.08 7.37 35.57 3.86 R
3674 8001 2.694628 AGAAAATGCAGCAAAGGTGTGA 59.305 40.909 0.00 0.00 33.19 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.249013 TTGCCGTATGTGTGTGCG 58.751 55.556 0.00 0.00 0.00 5.34
20 21 3.164576 CCGTATGTGTGTGCGGTG 58.835 61.111 0.00 0.00 41.61 4.94
21 22 2.474266 CGTATGTGTGTGCGGTGC 59.526 61.111 0.00 0.00 0.00 5.01
22 23 2.313909 CGTATGTGTGTGCGGTGCA 61.314 57.895 0.00 0.00 35.60 4.57
23 24 1.634757 CGTATGTGTGTGCGGTGCAT 61.635 55.000 0.00 0.00 41.91 3.96
24 25 0.179192 GTATGTGTGTGCGGTGCATG 60.179 55.000 0.00 0.00 41.91 4.06
25 26 1.304509 TATGTGTGTGCGGTGCATGG 61.305 55.000 0.00 0.00 41.91 3.66
26 27 4.705519 GTGTGTGCGGTGCATGGC 62.706 66.667 5.11 5.11 41.91 4.40
34 35 4.722700 GGTGCATGGCCAGTCCGT 62.723 66.667 13.05 0.00 37.80 4.69
35 36 2.267642 GTGCATGGCCAGTCCGTA 59.732 61.111 13.05 0.00 37.80 4.02
36 37 1.376683 GTGCATGGCCAGTCCGTAA 60.377 57.895 13.05 0.00 37.80 3.18
37 38 1.376683 TGCATGGCCAGTCCGTAAC 60.377 57.895 13.05 0.00 37.80 2.50
38 39 2.112815 GCATGGCCAGTCCGTAACC 61.113 63.158 13.05 0.00 37.80 2.85
39 40 1.602237 CATGGCCAGTCCGTAACCT 59.398 57.895 13.05 0.00 37.80 3.50
40 41 0.744414 CATGGCCAGTCCGTAACCTG 60.744 60.000 13.05 0.00 37.80 4.00
41 42 1.910580 ATGGCCAGTCCGTAACCTGG 61.911 60.000 13.05 1.31 39.79 4.45
43 44 3.065306 CCAGTCCGTAACCTGGCA 58.935 61.111 0.00 0.00 0.00 4.92
44 45 1.079127 CCAGTCCGTAACCTGGCAG 60.079 63.158 7.75 7.75 0.00 4.85
45 46 1.741770 CAGTCCGTAACCTGGCAGC 60.742 63.158 9.56 0.00 0.00 5.25
46 47 1.913762 AGTCCGTAACCTGGCAGCT 60.914 57.895 9.56 0.25 0.00 4.24
47 48 0.613853 AGTCCGTAACCTGGCAGCTA 60.614 55.000 9.56 0.00 0.00 3.32
48 49 0.459759 GTCCGTAACCTGGCAGCTAC 60.460 60.000 9.56 11.45 0.00 3.58
49 50 0.613853 TCCGTAACCTGGCAGCTACT 60.614 55.000 9.56 0.00 0.00 2.57
50 51 1.108776 CCGTAACCTGGCAGCTACTA 58.891 55.000 9.56 0.00 0.00 1.82
51 52 1.479323 CCGTAACCTGGCAGCTACTAA 59.521 52.381 9.56 0.00 0.00 2.24
52 53 2.102588 CCGTAACCTGGCAGCTACTAAT 59.897 50.000 9.56 0.00 0.00 1.73
53 54 3.123804 CGTAACCTGGCAGCTACTAATG 58.876 50.000 9.56 0.00 0.00 1.90
54 55 2.044123 AACCTGGCAGCTACTAATGC 57.956 50.000 9.56 0.00 41.80 3.56
55 56 0.179073 ACCTGGCAGCTACTAATGCG 60.179 55.000 9.56 0.00 43.49 4.73
56 57 0.104855 CCTGGCAGCTACTAATGCGA 59.895 55.000 9.56 0.00 43.49 5.10
57 58 1.212616 CTGGCAGCTACTAATGCGAC 58.787 55.000 0.00 0.00 43.49 5.19
58 59 0.527600 TGGCAGCTACTAATGCGACG 60.528 55.000 0.00 0.00 43.49 5.12
59 60 1.215655 GGCAGCTACTAATGCGACGG 61.216 60.000 0.00 0.00 43.49 4.79
60 61 0.248907 GCAGCTACTAATGCGACGGA 60.249 55.000 0.00 0.00 35.28 4.69
61 62 1.478137 CAGCTACTAATGCGACGGAC 58.522 55.000 0.00 0.00 35.28 4.79
62 63 0.029035 AGCTACTAATGCGACGGACG 59.971 55.000 0.00 0.00 45.66 4.79
63 64 0.028505 GCTACTAATGCGACGGACGA 59.971 55.000 3.67 0.00 45.77 4.20
64 65 1.532505 GCTACTAATGCGACGGACGAA 60.533 52.381 3.67 0.00 45.77 3.85
65 66 2.857489 GCTACTAATGCGACGGACGAAT 60.857 50.000 3.67 0.00 42.78 3.34
66 67 1.556564 ACTAATGCGACGGACGAATG 58.443 50.000 3.67 0.00 39.64 2.67
67 68 0.852777 CTAATGCGACGGACGAATGG 59.147 55.000 3.67 0.00 39.64 3.16
68 69 0.456628 TAATGCGACGGACGAATGGA 59.543 50.000 3.67 0.00 39.64 3.41
69 70 0.806102 AATGCGACGGACGAATGGAG 60.806 55.000 3.67 0.00 39.64 3.86
70 71 1.663379 ATGCGACGGACGAATGGAGA 61.663 55.000 3.67 0.00 45.77 3.71
71 72 1.153901 GCGACGGACGAATGGAGAA 60.154 57.895 3.67 0.00 45.77 2.87
72 73 0.734942 GCGACGGACGAATGGAGAAA 60.735 55.000 3.67 0.00 45.77 2.52
73 74 1.922570 CGACGGACGAATGGAGAAAT 58.077 50.000 0.00 0.00 45.77 2.17
74 75 1.588404 CGACGGACGAATGGAGAAATG 59.412 52.381 0.00 0.00 45.77 2.32
75 76 2.618053 GACGGACGAATGGAGAAATGT 58.382 47.619 0.00 0.00 0.00 2.71
76 77 2.346803 ACGGACGAATGGAGAAATGTG 58.653 47.619 0.00 0.00 0.00 3.21
77 78 2.028476 ACGGACGAATGGAGAAATGTGA 60.028 45.455 0.00 0.00 0.00 3.58
78 79 2.604914 CGGACGAATGGAGAAATGTGAG 59.395 50.000 0.00 0.00 0.00 3.51
79 80 2.939103 GGACGAATGGAGAAATGTGAGG 59.061 50.000 0.00 0.00 0.00 3.86
80 81 3.600388 GACGAATGGAGAAATGTGAGGT 58.400 45.455 0.00 0.00 0.00 3.85
81 82 3.338249 ACGAATGGAGAAATGTGAGGTG 58.662 45.455 0.00 0.00 0.00 4.00
82 83 2.096496 CGAATGGAGAAATGTGAGGTGC 59.904 50.000 0.00 0.00 0.00 5.01
83 84 2.134789 ATGGAGAAATGTGAGGTGCC 57.865 50.000 0.00 0.00 0.00 5.01
84 85 0.770499 TGGAGAAATGTGAGGTGCCA 59.230 50.000 0.00 0.00 0.00 4.92
85 86 1.355381 TGGAGAAATGTGAGGTGCCAT 59.645 47.619 0.00 0.00 0.00 4.40
86 87 2.019984 GGAGAAATGTGAGGTGCCATC 58.980 52.381 0.00 0.00 0.00 3.51
87 88 2.618816 GGAGAAATGTGAGGTGCCATCA 60.619 50.000 0.00 0.00 0.00 3.07
88 89 2.681848 GAGAAATGTGAGGTGCCATCAG 59.318 50.000 0.00 0.00 0.00 2.90
89 90 1.747355 GAAATGTGAGGTGCCATCAGG 59.253 52.381 0.00 0.00 38.23 3.86
90 91 0.994247 AATGTGAGGTGCCATCAGGA 59.006 50.000 0.00 0.00 36.89 3.86
91 92 1.219773 ATGTGAGGTGCCATCAGGAT 58.780 50.000 0.00 0.00 36.89 3.24
92 93 0.994247 TGTGAGGTGCCATCAGGATT 59.006 50.000 0.00 0.00 36.89 3.01
93 94 1.340308 TGTGAGGTGCCATCAGGATTG 60.340 52.381 0.00 0.00 36.89 2.67
94 95 0.256752 TGAGGTGCCATCAGGATTGG 59.743 55.000 0.00 0.00 36.89 3.16
95 96 0.257039 GAGGTGCCATCAGGATTGGT 59.743 55.000 0.00 0.00 36.89 3.67
96 97 0.257039 AGGTGCCATCAGGATTGGTC 59.743 55.000 0.00 0.00 36.89 4.02
97 98 0.753111 GGTGCCATCAGGATTGGTCC 60.753 60.000 0.00 0.00 45.45 4.46
109 110 4.287766 GGATTGGTCCTTGTTGACTACT 57.712 45.455 0.00 0.00 41.60 2.57
110 111 4.254492 GGATTGGTCCTTGTTGACTACTC 58.746 47.826 0.00 0.00 41.60 2.59
111 112 3.764237 TTGGTCCTTGTTGACTACTCC 57.236 47.619 0.00 0.00 35.54 3.85
112 113 1.616865 TGGTCCTTGTTGACTACTCCG 59.383 52.381 0.00 0.00 35.54 4.63
113 114 1.672145 GGTCCTTGTTGACTACTCCGC 60.672 57.143 0.00 0.00 35.54 5.54
114 115 1.000506 GTCCTTGTTGACTACTCCGCA 59.999 52.381 0.00 0.00 32.39 5.69
115 116 1.000506 TCCTTGTTGACTACTCCGCAC 59.999 52.381 0.00 0.00 0.00 5.34
116 117 1.000955 CCTTGTTGACTACTCCGCACT 59.999 52.381 0.00 0.00 0.00 4.40
117 118 2.061773 CTTGTTGACTACTCCGCACTG 58.938 52.381 0.00 0.00 0.00 3.66
118 119 0.319555 TGTTGACTACTCCGCACTGC 60.320 55.000 0.00 0.00 0.00 4.40
142 143 3.011513 CAGTCTCGCTGCAAATTGC 57.988 52.632 11.58 11.58 45.29 3.56
151 152 2.261361 GCAAATTGCGGGGGTCAC 59.739 61.111 0.90 0.00 31.71 3.67
152 153 2.969827 CAAATTGCGGGGGTCACC 59.030 61.111 0.00 0.00 39.11 4.02
153 154 1.606313 CAAATTGCGGGGGTCACCT 60.606 57.895 0.00 0.00 40.03 4.00
154 155 0.322997 CAAATTGCGGGGGTCACCTA 60.323 55.000 0.00 0.00 40.03 3.08
155 156 0.406361 AAATTGCGGGGGTCACCTAA 59.594 50.000 0.00 0.00 40.03 2.69
156 157 0.629058 AATTGCGGGGGTCACCTAAT 59.371 50.000 0.00 0.00 40.03 1.73
157 158 0.106719 ATTGCGGGGGTCACCTAATG 60.107 55.000 0.00 0.00 40.03 1.90
158 159 2.192175 GCGGGGGTCACCTAATGG 59.808 66.667 0.00 0.00 40.03 3.16
160 161 1.525442 CGGGGGTCACCTAATGGTC 59.475 63.158 0.00 0.00 46.60 4.02
161 162 0.981277 CGGGGGTCACCTAATGGTCT 60.981 60.000 0.00 0.00 46.60 3.85
162 163 1.296002 GGGGGTCACCTAATGGTCTT 58.704 55.000 0.00 0.00 46.60 3.01
163 164 1.639108 GGGGGTCACCTAATGGTCTTT 59.361 52.381 0.00 0.00 46.60 2.52
164 165 2.356844 GGGGGTCACCTAATGGTCTTTC 60.357 54.545 0.00 0.00 46.60 2.62
165 166 2.576648 GGGGTCACCTAATGGTCTTTCT 59.423 50.000 0.00 0.00 46.60 2.52
166 167 3.610911 GGGTCACCTAATGGTCTTTCTG 58.389 50.000 0.00 0.00 46.60 3.02
167 168 3.263425 GGGTCACCTAATGGTCTTTCTGA 59.737 47.826 0.00 0.00 46.60 3.27
168 169 4.508662 GGTCACCTAATGGTCTTTCTGAG 58.491 47.826 0.00 0.00 46.60 3.35
169 170 4.508662 GTCACCTAATGGTCTTTCTGAGG 58.491 47.826 0.00 0.00 46.60 3.86
170 171 4.223032 GTCACCTAATGGTCTTTCTGAGGA 59.777 45.833 0.00 0.00 46.60 3.71
171 172 5.032846 TCACCTAATGGTCTTTCTGAGGAT 58.967 41.667 0.00 0.00 46.60 3.24
172 173 5.488919 TCACCTAATGGTCTTTCTGAGGATT 59.511 40.000 0.00 0.00 46.60 3.01
173 174 6.012508 TCACCTAATGGTCTTTCTGAGGATTT 60.013 38.462 0.00 0.00 46.60 2.17
174 175 6.317391 CACCTAATGGTCTTTCTGAGGATTTC 59.683 42.308 0.00 0.00 46.60 2.17
175 176 6.216456 ACCTAATGGTCTTTCTGAGGATTTCT 59.784 38.462 0.00 0.00 44.78 2.52
176 177 6.765512 CCTAATGGTCTTTCTGAGGATTTCTC 59.234 42.308 0.00 0.00 42.74 2.87
178 179 4.899502 TGGTCTTTCTGAGGATTTCTCAC 58.100 43.478 0.00 0.00 46.71 3.51
179 180 4.347876 TGGTCTTTCTGAGGATTTCTCACA 59.652 41.667 0.00 0.00 46.71 3.58
180 181 4.934602 GGTCTTTCTGAGGATTTCTCACAG 59.065 45.833 0.00 0.00 46.71 3.66
181 182 4.391523 GTCTTTCTGAGGATTTCTCACAGC 59.608 45.833 0.00 0.00 46.71 4.40
182 183 3.340814 TTCTGAGGATTTCTCACAGCC 57.659 47.619 0.00 0.00 46.71 4.85
183 184 2.259917 TCTGAGGATTTCTCACAGCCA 58.740 47.619 0.00 0.00 46.71 4.75
184 185 2.639347 TCTGAGGATTTCTCACAGCCAA 59.361 45.455 0.00 0.00 46.71 4.52
185 186 3.265221 TCTGAGGATTTCTCACAGCCAAT 59.735 43.478 0.00 0.00 46.71 3.16
186 187 4.015084 CTGAGGATTTCTCACAGCCAATT 58.985 43.478 0.00 0.00 46.71 2.32
187 188 3.760151 TGAGGATTTCTCACAGCCAATTG 59.240 43.478 0.00 0.00 46.71 2.32
188 189 2.494870 AGGATTTCTCACAGCCAATTGC 59.505 45.455 0.00 0.00 41.71 3.56
189 190 5.645275 GAGGATTTCTCACAGCCAATTGCT 61.645 45.833 0.00 0.00 46.31 3.91
190 191 7.069168 GAGGATTTCTCACAGCCAATTGCTT 62.069 44.000 0.00 0.00 44.51 3.91
191 192 8.981714 GAGGATTTCTCACAGCCAATTGCTTG 62.982 46.154 0.00 2.96 44.51 4.01
197 198 4.465413 GCCAATTGCTTGAGCGTC 57.535 55.556 0.00 0.00 45.83 5.19
198 199 1.580942 GCCAATTGCTTGAGCGTCA 59.419 52.632 0.00 0.00 45.83 4.35
199 200 0.730494 GCCAATTGCTTGAGCGTCAC 60.730 55.000 0.00 0.00 45.83 3.67
200 201 0.877071 CCAATTGCTTGAGCGTCACT 59.123 50.000 0.00 0.00 45.83 3.41
201 202 1.267806 CCAATTGCTTGAGCGTCACTT 59.732 47.619 0.00 0.00 45.83 3.16
202 203 2.578495 CAATTGCTTGAGCGTCACTTC 58.422 47.619 0.00 0.00 45.83 3.01
203 204 1.160137 ATTGCTTGAGCGTCACTTCC 58.840 50.000 0.00 0.00 45.83 3.46
204 205 0.106708 TTGCTTGAGCGTCACTTCCT 59.893 50.000 0.00 0.00 45.83 3.36
205 206 0.106708 TGCTTGAGCGTCACTTCCTT 59.893 50.000 0.00 0.00 45.83 3.36
206 207 0.793250 GCTTGAGCGTCACTTCCTTC 59.207 55.000 0.00 0.00 0.00 3.46
207 208 1.873903 GCTTGAGCGTCACTTCCTTCA 60.874 52.381 0.00 0.00 0.00 3.02
208 209 2.693069 CTTGAGCGTCACTTCCTTCAT 58.307 47.619 0.00 0.00 0.00 2.57
209 210 2.084610 TGAGCGTCACTTCCTTCATG 57.915 50.000 0.00 0.00 0.00 3.07
210 211 1.618343 TGAGCGTCACTTCCTTCATGA 59.382 47.619 0.00 0.00 0.00 3.07
211 212 2.037121 TGAGCGTCACTTCCTTCATGAA 59.963 45.455 8.12 8.12 0.00 2.57
212 213 2.670414 GAGCGTCACTTCCTTCATGAAG 59.330 50.000 25.75 25.75 45.79 3.02
225 226 5.782893 CTTCATGAAGGGGTTGTTGTTAA 57.217 39.130 25.14 0.00 34.87 2.01
226 227 6.155475 CTTCATGAAGGGGTTGTTGTTAAA 57.845 37.500 25.14 0.00 34.87 1.52
227 228 5.782893 TCATGAAGGGGTTGTTGTTAAAG 57.217 39.130 0.00 0.00 0.00 1.85
228 229 5.450453 TCATGAAGGGGTTGTTGTTAAAGA 58.550 37.500 0.00 0.00 0.00 2.52
229 230 5.894393 TCATGAAGGGGTTGTTGTTAAAGAA 59.106 36.000 0.00 0.00 0.00 2.52
230 231 6.553100 TCATGAAGGGGTTGTTGTTAAAGAAT 59.447 34.615 0.00 0.00 0.00 2.40
231 232 6.399639 TGAAGGGGTTGTTGTTAAAGAATC 57.600 37.500 0.00 0.00 0.00 2.52
232 233 6.133356 TGAAGGGGTTGTTGTTAAAGAATCT 58.867 36.000 0.00 0.00 0.00 2.40
233 234 6.264518 TGAAGGGGTTGTTGTTAAAGAATCTC 59.735 38.462 0.00 0.00 0.00 2.75
234 235 4.760204 AGGGGTTGTTGTTAAAGAATCTCG 59.240 41.667 0.00 0.00 25.47 4.04
235 236 4.473199 GGGTTGTTGTTAAAGAATCTCGC 58.527 43.478 0.00 0.00 0.00 5.03
236 237 4.473199 GGTTGTTGTTAAAGAATCTCGCC 58.527 43.478 0.00 0.00 0.00 5.54
237 238 4.148891 GTTGTTGTTAAAGAATCTCGCCG 58.851 43.478 0.00 0.00 0.00 6.46
238 239 3.395639 TGTTGTTAAAGAATCTCGCCGT 58.604 40.909 0.00 0.00 0.00 5.68
239 240 3.430895 TGTTGTTAAAGAATCTCGCCGTC 59.569 43.478 0.00 0.00 0.00 4.79
240 241 2.613691 TGTTAAAGAATCTCGCCGTCC 58.386 47.619 0.00 0.00 0.00 4.79
241 242 1.587034 GTTAAAGAATCTCGCCGTCCG 59.413 52.381 0.00 0.00 38.61 4.79
242 243 0.813184 TAAAGAATCTCGCCGTCCGT 59.187 50.000 0.00 0.00 38.35 4.69
243 244 0.037605 AAAGAATCTCGCCGTCCGTT 60.038 50.000 0.00 0.00 38.35 4.44
244 245 0.037605 AAGAATCTCGCCGTCCGTTT 60.038 50.000 0.00 0.00 38.35 3.60
245 246 0.736325 AGAATCTCGCCGTCCGTTTG 60.736 55.000 0.00 0.00 38.35 2.93
246 247 0.734942 GAATCTCGCCGTCCGTTTGA 60.735 55.000 0.00 0.00 38.35 2.69
247 248 0.108329 AATCTCGCCGTCCGTTTGAT 60.108 50.000 0.00 0.00 38.35 2.57
248 249 0.108329 ATCTCGCCGTCCGTTTGATT 60.108 50.000 0.00 0.00 38.35 2.57
249 250 0.320073 TCTCGCCGTCCGTTTGATTT 60.320 50.000 0.00 0.00 38.35 2.17
250 251 0.094730 CTCGCCGTCCGTTTGATTTC 59.905 55.000 0.00 0.00 38.35 2.17
251 252 0.600518 TCGCCGTCCGTTTGATTTCA 60.601 50.000 0.00 0.00 38.35 2.69
252 253 0.446222 CGCCGTCCGTTTGATTTCAT 59.554 50.000 0.00 0.00 0.00 2.57
253 254 1.529010 CGCCGTCCGTTTGATTTCATC 60.529 52.381 0.00 0.00 0.00 2.92
254 255 1.466950 GCCGTCCGTTTGATTTCATCA 59.533 47.619 0.00 0.00 37.55 3.07
255 256 2.476185 GCCGTCCGTTTGATTTCATCAG 60.476 50.000 0.00 0.00 40.94 2.90
256 257 3.000041 CCGTCCGTTTGATTTCATCAGA 59.000 45.455 0.00 0.00 40.94 3.27
257 258 3.623060 CCGTCCGTTTGATTTCATCAGAT 59.377 43.478 0.00 0.00 40.94 2.90
258 259 4.494690 CCGTCCGTTTGATTTCATCAGATG 60.495 45.833 3.71 3.71 40.94 2.90
259 260 4.494690 CGTCCGTTTGATTTCATCAGATGG 60.495 45.833 10.67 8.58 46.53 3.51
260 261 4.396166 GTCCGTTTGATTTCATCAGATGGT 59.604 41.667 10.67 0.00 45.76 3.55
261 262 5.009631 TCCGTTTGATTTCATCAGATGGTT 58.990 37.500 10.67 0.00 45.76 3.67
262 263 5.097529 CCGTTTGATTTCATCAGATGGTTG 58.902 41.667 10.67 0.00 42.55 3.77
263 264 5.097529 CGTTTGATTTCATCAGATGGTTGG 58.902 41.667 10.67 0.00 40.94 3.77
264 265 5.335897 CGTTTGATTTCATCAGATGGTTGGT 60.336 40.000 10.67 0.00 40.94 3.67
265 266 5.648178 TTGATTTCATCAGATGGTTGGTG 57.352 39.130 10.67 0.00 40.94 4.17
266 267 3.444742 TGATTTCATCAGATGGTTGGTGC 59.555 43.478 10.67 0.00 33.59 5.01
267 268 1.452110 TTCATCAGATGGTTGGTGCG 58.548 50.000 10.67 0.00 0.00 5.34
268 269 0.392863 TCATCAGATGGTTGGTGCGG 60.393 55.000 10.67 0.00 0.00 5.69
269 270 1.750399 ATCAGATGGTTGGTGCGGC 60.750 57.895 0.00 0.00 0.00 6.53
270 271 3.443045 CAGATGGTTGGTGCGGCC 61.443 66.667 0.00 0.00 37.90 6.13
279 280 3.511362 TGGTGCGGCCATGATAATT 57.489 47.368 2.24 0.00 43.61 1.40
280 281 2.647683 TGGTGCGGCCATGATAATTA 57.352 45.000 2.24 0.00 43.61 1.40
281 282 3.153369 TGGTGCGGCCATGATAATTAT 57.847 42.857 2.24 0.00 43.61 1.28
282 283 3.495331 TGGTGCGGCCATGATAATTATT 58.505 40.909 2.24 0.00 43.61 1.40
283 284 3.255395 TGGTGCGGCCATGATAATTATTG 59.745 43.478 2.24 0.00 43.61 1.90
284 285 3.255642 GGTGCGGCCATGATAATTATTGT 59.744 43.478 2.24 0.00 37.17 2.71
285 286 4.457603 GGTGCGGCCATGATAATTATTGTA 59.542 41.667 2.24 0.00 37.17 2.41
286 287 5.391950 GGTGCGGCCATGATAATTATTGTAG 60.392 44.000 2.24 0.00 37.17 2.74
287 288 5.181245 GTGCGGCCATGATAATTATTGTAGT 59.819 40.000 2.24 0.00 0.00 2.73
288 289 5.767665 TGCGGCCATGATAATTATTGTAGTT 59.232 36.000 2.24 0.00 0.00 2.24
289 290 6.264292 TGCGGCCATGATAATTATTGTAGTTT 59.736 34.615 2.24 0.00 0.00 2.66
290 291 6.582295 GCGGCCATGATAATTATTGTAGTTTG 59.418 38.462 2.24 0.00 0.00 2.93
291 292 7.648142 CGGCCATGATAATTATTGTAGTTTGT 58.352 34.615 2.24 0.00 0.00 2.83
292 293 7.803189 CGGCCATGATAATTATTGTAGTTTGTC 59.197 37.037 2.24 0.00 0.00 3.18
293 294 7.803189 GGCCATGATAATTATTGTAGTTTGTCG 59.197 37.037 0.00 0.00 0.00 4.35
294 295 8.556194 GCCATGATAATTATTGTAGTTTGTCGA 58.444 33.333 0.00 0.00 0.00 4.20
304 305 6.774354 TTGTAGTTTGTCGATTGTAGAACC 57.226 37.500 0.00 0.00 0.00 3.62
305 306 5.232463 TGTAGTTTGTCGATTGTAGAACCC 58.768 41.667 0.00 0.00 0.00 4.11
306 307 3.323243 AGTTTGTCGATTGTAGAACCCG 58.677 45.455 0.00 0.00 0.00 5.28
307 308 3.006110 AGTTTGTCGATTGTAGAACCCGA 59.994 43.478 0.00 0.00 0.00 5.14
308 309 3.880047 TTGTCGATTGTAGAACCCGAT 57.120 42.857 0.00 0.00 0.00 4.18
309 310 3.880047 TGTCGATTGTAGAACCCGATT 57.120 42.857 0.00 0.00 0.00 3.34
310 311 3.517602 TGTCGATTGTAGAACCCGATTG 58.482 45.455 0.00 0.00 0.00 2.67
311 312 2.284417 GTCGATTGTAGAACCCGATTGC 59.716 50.000 0.00 0.00 0.00 3.56
312 313 2.167693 TCGATTGTAGAACCCGATTGCT 59.832 45.455 0.00 0.00 0.00 3.91
313 314 2.936498 CGATTGTAGAACCCGATTGCTT 59.064 45.455 0.00 0.00 0.00 3.91
314 315 3.374058 CGATTGTAGAACCCGATTGCTTT 59.626 43.478 0.00 0.00 0.00 3.51
315 316 4.142687 CGATTGTAGAACCCGATTGCTTTT 60.143 41.667 0.00 0.00 0.00 2.27
316 317 5.619086 CGATTGTAGAACCCGATTGCTTTTT 60.619 40.000 0.00 0.00 0.00 1.94
339 340 2.990774 CGTCGCATACGCATAACTTT 57.009 45.000 0.00 0.00 46.10 2.66
340 341 2.614212 CGTCGCATACGCATAACTTTG 58.386 47.619 0.00 0.00 46.10 2.77
341 342 2.596575 CGTCGCATACGCATAACTTTGG 60.597 50.000 0.00 0.00 46.10 3.28
342 343 2.350498 GTCGCATACGCATAACTTTGGT 59.650 45.455 0.00 0.00 39.84 3.67
343 344 3.552699 GTCGCATACGCATAACTTTGGTA 59.447 43.478 0.00 0.00 39.84 3.25
344 345 4.210537 GTCGCATACGCATAACTTTGGTAT 59.789 41.667 0.00 0.00 39.84 2.73
345 346 4.812091 TCGCATACGCATAACTTTGGTATT 59.188 37.500 0.00 0.00 39.84 1.89
346 347 5.984323 TCGCATACGCATAACTTTGGTATTA 59.016 36.000 0.00 0.00 39.84 0.98
347 348 6.647481 TCGCATACGCATAACTTTGGTATTAT 59.353 34.615 0.00 0.00 39.84 1.28
348 349 6.953743 CGCATACGCATAACTTTGGTATTATC 59.046 38.462 0.00 0.00 38.40 1.75
349 350 7.359681 CGCATACGCATAACTTTGGTATTATCA 60.360 37.037 0.00 0.00 38.40 2.15
350 351 8.286800 GCATACGCATAACTTTGGTATTATCAA 58.713 33.333 0.00 0.00 38.36 2.57
372 373 8.177119 TCAAAATTTACTATTTGTCAGCCTGT 57.823 30.769 0.00 0.00 37.68 4.00
373 374 8.637986 TCAAAATTTACTATTTGTCAGCCTGTT 58.362 29.630 0.00 0.00 37.68 3.16
374 375 9.260002 CAAAATTTACTATTTGTCAGCCTGTTT 57.740 29.630 0.00 0.00 33.04 2.83
375 376 9.830975 AAAATTTACTATTTGTCAGCCTGTTTT 57.169 25.926 0.00 0.00 0.00 2.43
376 377 9.830975 AAATTTACTATTTGTCAGCCTGTTTTT 57.169 25.926 0.00 0.00 0.00 1.94
400 401 9.457110 TTTTTATGTATGCTAGTGTTTGTTGTG 57.543 29.630 0.00 0.00 0.00 3.33
401 402 4.481930 TGTATGCTAGTGTTTGTTGTGC 57.518 40.909 0.00 0.00 0.00 4.57
402 403 2.686558 ATGCTAGTGTTTGTTGTGCG 57.313 45.000 0.00 0.00 0.00 5.34
403 404 0.028770 TGCTAGTGTTTGTTGTGCGC 59.971 50.000 0.00 0.00 0.00 6.09
404 405 0.028770 GCTAGTGTTTGTTGTGCGCA 59.971 50.000 5.66 5.66 0.00 6.09
405 406 1.334960 GCTAGTGTTTGTTGTGCGCAT 60.335 47.619 15.91 0.00 0.00 4.73
406 407 2.858260 GCTAGTGTTTGTTGTGCGCATT 60.858 45.455 15.91 0.00 0.00 3.56
407 408 1.838913 AGTGTTTGTTGTGCGCATTC 58.161 45.000 15.91 7.97 0.00 2.67
408 409 1.405105 AGTGTTTGTTGTGCGCATTCT 59.595 42.857 15.91 0.00 0.00 2.40
409 410 2.616376 AGTGTTTGTTGTGCGCATTCTA 59.384 40.909 15.91 1.18 0.00 2.10
410 411 3.066064 AGTGTTTGTTGTGCGCATTCTAA 59.934 39.130 15.91 7.73 0.00 2.10
411 412 3.980775 GTGTTTGTTGTGCGCATTCTAAT 59.019 39.130 15.91 0.00 0.00 1.73
412 413 4.444056 GTGTTTGTTGTGCGCATTCTAATT 59.556 37.500 15.91 0.00 0.00 1.40
413 414 5.046529 TGTTTGTTGTGCGCATTCTAATTT 58.953 33.333 15.91 0.00 0.00 1.82
414 415 6.143118 GTGTTTGTTGTGCGCATTCTAATTTA 59.857 34.615 15.91 0.00 0.00 1.40
415 416 6.362016 TGTTTGTTGTGCGCATTCTAATTTAG 59.638 34.615 15.91 0.00 0.00 1.85
416 417 4.411327 TGTTGTGCGCATTCTAATTTAGC 58.589 39.130 15.91 0.00 0.00 3.09
417 418 4.083057 TGTTGTGCGCATTCTAATTTAGCA 60.083 37.500 15.91 0.00 0.00 3.49
418 419 4.277257 TGTGCGCATTCTAATTTAGCAG 57.723 40.909 15.91 0.00 33.60 4.24
419 420 3.938334 TGTGCGCATTCTAATTTAGCAGA 59.062 39.130 15.91 0.00 33.60 4.26
420 421 4.034394 TGTGCGCATTCTAATTTAGCAGAG 59.966 41.667 15.91 0.00 33.60 3.35
421 422 4.271049 GTGCGCATTCTAATTTAGCAGAGA 59.729 41.667 15.91 0.00 33.60 3.10
422 423 4.271049 TGCGCATTCTAATTTAGCAGAGAC 59.729 41.667 5.66 0.00 0.00 3.36
423 424 4.509600 GCGCATTCTAATTTAGCAGAGACT 59.490 41.667 0.30 0.00 0.00 3.24
424 425 5.557893 GCGCATTCTAATTTAGCAGAGACTG 60.558 44.000 0.30 0.00 34.12 3.51
425 426 5.050499 CGCATTCTAATTTAGCAGAGACTGG 60.050 44.000 0.00 0.00 31.21 4.00
426 427 6.051717 GCATTCTAATTTAGCAGAGACTGGA 58.948 40.000 0.00 0.00 31.21 3.86
427 428 6.709846 GCATTCTAATTTAGCAGAGACTGGAT 59.290 38.462 0.00 0.00 31.21 3.41
428 429 7.307870 GCATTCTAATTTAGCAGAGACTGGATG 60.308 40.741 0.00 0.00 31.21 3.51
429 430 5.605534 TCTAATTTAGCAGAGACTGGATGC 58.394 41.667 0.00 0.00 40.29 3.91
430 431 2.299993 TTTAGCAGAGACTGGATGCG 57.700 50.000 0.00 0.00 44.64 4.73
431 432 1.186200 TTAGCAGAGACTGGATGCGT 58.814 50.000 0.00 0.00 44.64 5.24
432 433 0.457443 TAGCAGAGACTGGATGCGTG 59.543 55.000 0.00 0.00 44.64 5.34
433 434 1.079543 GCAGAGACTGGATGCGTGT 60.080 57.895 0.00 0.00 31.21 4.49
434 435 0.671781 GCAGAGACTGGATGCGTGTT 60.672 55.000 0.00 0.00 31.21 3.32
435 436 1.354040 CAGAGACTGGATGCGTGTTC 58.646 55.000 0.00 0.00 0.00 3.18
436 437 1.067283 CAGAGACTGGATGCGTGTTCT 60.067 52.381 0.00 0.00 0.00 3.01
437 438 1.620819 AGAGACTGGATGCGTGTTCTT 59.379 47.619 0.00 0.00 0.00 2.52
438 439 2.037772 AGAGACTGGATGCGTGTTCTTT 59.962 45.455 0.00 0.00 0.00 2.52
439 440 3.258372 AGAGACTGGATGCGTGTTCTTTA 59.742 43.478 0.00 0.00 0.00 1.85
440 441 4.081420 AGAGACTGGATGCGTGTTCTTTAT 60.081 41.667 0.00 0.00 0.00 1.40
441 442 3.935203 AGACTGGATGCGTGTTCTTTATG 59.065 43.478 0.00 0.00 0.00 1.90
442 443 3.674997 ACTGGATGCGTGTTCTTTATGT 58.325 40.909 0.00 0.00 0.00 2.29
443 444 4.072131 ACTGGATGCGTGTTCTTTATGTT 58.928 39.130 0.00 0.00 0.00 2.71
444 445 4.518970 ACTGGATGCGTGTTCTTTATGTTT 59.481 37.500 0.00 0.00 0.00 2.83
445 446 4.793071 TGGATGCGTGTTCTTTATGTTTG 58.207 39.130 0.00 0.00 0.00 2.93
446 447 4.277174 TGGATGCGTGTTCTTTATGTTTGT 59.723 37.500 0.00 0.00 0.00 2.83
447 448 5.219633 GGATGCGTGTTCTTTATGTTTGTT 58.780 37.500 0.00 0.00 0.00 2.83
448 449 5.689961 GGATGCGTGTTCTTTATGTTTGTTT 59.310 36.000 0.00 0.00 0.00 2.83
449 450 6.129194 GGATGCGTGTTCTTTATGTTTGTTTC 60.129 38.462 0.00 0.00 0.00 2.78
450 451 5.038033 TGCGTGTTCTTTATGTTTGTTTCC 58.962 37.500 0.00 0.00 0.00 3.13
451 452 5.163602 TGCGTGTTCTTTATGTTTGTTTCCT 60.164 36.000 0.00 0.00 0.00 3.36
452 453 5.398416 GCGTGTTCTTTATGTTTGTTTCCTC 59.602 40.000 0.00 0.00 0.00 3.71
453 454 6.725246 CGTGTTCTTTATGTTTGTTTCCTCT 58.275 36.000 0.00 0.00 0.00 3.69
454 455 7.193595 CGTGTTCTTTATGTTTGTTTCCTCTT 58.806 34.615 0.00 0.00 0.00 2.85
455 456 8.339714 CGTGTTCTTTATGTTTGTTTCCTCTTA 58.660 33.333 0.00 0.00 0.00 2.10
459 460 9.691362 TTCTTTATGTTTGTTTCCTCTTAATGC 57.309 29.630 0.00 0.00 0.00 3.56
460 461 9.077885 TCTTTATGTTTGTTTCCTCTTAATGCT 57.922 29.630 0.00 0.00 0.00 3.79
461 462 9.696917 CTTTATGTTTGTTTCCTCTTAATGCTT 57.303 29.630 0.00 0.00 0.00 3.91
462 463 9.691362 TTTATGTTTGTTTCCTCTTAATGCTTC 57.309 29.630 0.00 0.00 0.00 3.86
463 464 6.959639 TGTTTGTTTCCTCTTAATGCTTCT 57.040 33.333 0.00 0.00 0.00 2.85
464 465 6.970484 TGTTTGTTTCCTCTTAATGCTTCTC 58.030 36.000 0.00 0.00 0.00 2.87
465 466 6.545666 TGTTTGTTTCCTCTTAATGCTTCTCA 59.454 34.615 0.00 0.00 0.00 3.27
466 467 7.231317 TGTTTGTTTCCTCTTAATGCTTCTCAT 59.769 33.333 0.00 0.00 36.87 2.90
467 468 7.765695 TTGTTTCCTCTTAATGCTTCTCATT 57.234 32.000 0.00 0.00 46.48 2.57
468 469 7.383102 TGTTTCCTCTTAATGCTTCTCATTC 57.617 36.000 0.00 0.00 43.90 2.67
469 470 6.375455 TGTTTCCTCTTAATGCTTCTCATTCC 59.625 38.462 0.00 0.00 43.90 3.01
470 471 5.698741 TCCTCTTAATGCTTCTCATTCCA 57.301 39.130 0.00 0.00 43.90 3.53
471 472 6.257994 TCCTCTTAATGCTTCTCATTCCAT 57.742 37.500 0.00 0.00 43.90 3.41
472 473 6.666678 TCCTCTTAATGCTTCTCATTCCATT 58.333 36.000 0.00 0.00 43.90 3.16
473 474 7.121382 TCCTCTTAATGCTTCTCATTCCATTT 58.879 34.615 0.00 0.00 43.90 2.32
474 475 7.616935 TCCTCTTAATGCTTCTCATTCCATTTT 59.383 33.333 0.00 0.00 43.90 1.82
475 476 8.255905 CCTCTTAATGCTTCTCATTCCATTTTT 58.744 33.333 0.00 0.00 43.90 1.94
481 482 9.947433 AATGCTTCTCATTCCATTTTTAAATCA 57.053 25.926 0.00 0.00 41.34 2.57
482 483 9.947433 ATGCTTCTCATTCCATTTTTAAATCAA 57.053 25.926 0.00 0.00 29.16 2.57
483 484 9.947433 TGCTTCTCATTCCATTTTTAAATCAAT 57.053 25.926 0.00 0.00 0.00 2.57
523 524 2.176247 TTTAGGGAGCCTAGTCCTGG 57.824 55.000 0.00 0.00 37.42 4.45
529 530 2.512896 GCCTAGTCCTGGCCATGG 59.487 66.667 5.51 7.63 44.32 3.66
530 531 3.125376 GCCTAGTCCTGGCCATGGG 62.125 68.421 15.13 4.96 44.32 4.00
568 569 3.744719 GGCCCGAAAAAGCCCGAC 61.745 66.667 0.00 0.00 43.76 4.79
569 570 3.744719 GCCCGAAAAAGCCCGACC 61.745 66.667 0.00 0.00 0.00 4.79
570 571 3.060000 CCCGAAAAAGCCCGACCC 61.060 66.667 0.00 0.00 0.00 4.46
571 572 3.428282 CCGAAAAAGCCCGACCCG 61.428 66.667 0.00 0.00 0.00 5.28
572 573 2.357760 CGAAAAAGCCCGACCCGA 60.358 61.111 0.00 0.00 0.00 5.14
573 574 2.674084 CGAAAAAGCCCGACCCGAC 61.674 63.158 0.00 0.00 0.00 4.79
574 575 2.667199 AAAAAGCCCGACCCGACG 60.667 61.111 0.00 0.00 0.00 5.12
580 581 3.885521 CCCGACCCGACGCTACTC 61.886 72.222 0.00 0.00 0.00 2.59
581 582 3.885521 CCGACCCGACGCTACTCC 61.886 72.222 0.00 0.00 0.00 3.85
582 583 2.823147 CGACCCGACGCTACTCCT 60.823 66.667 0.00 0.00 0.00 3.69
583 584 2.799371 GACCCGACGCTACTCCTG 59.201 66.667 0.00 0.00 0.00 3.86
584 585 2.754658 ACCCGACGCTACTCCTGG 60.755 66.667 0.00 0.00 0.00 4.45
585 586 4.208686 CCCGACGCTACTCCTGGC 62.209 72.222 0.00 0.00 0.00 4.85
586 587 4.208686 CCGACGCTACTCCTGGCC 62.209 72.222 0.00 0.00 0.00 5.36
587 588 4.208686 CGACGCTACTCCTGGCCC 62.209 72.222 0.00 0.00 0.00 5.80
588 589 4.208686 GACGCTACTCCTGGCCCG 62.209 72.222 0.00 0.00 0.00 6.13
601 602 3.841870 GCCCGGGCCTAGATTTTG 58.158 61.111 36.64 0.00 34.56 2.44
602 603 1.226262 GCCCGGGCCTAGATTTTGA 59.774 57.895 36.64 0.00 34.56 2.69
603 604 0.819666 GCCCGGGCCTAGATTTTGAG 60.820 60.000 36.64 0.00 34.56 3.02
604 605 0.819666 CCCGGGCCTAGATTTTGAGC 60.820 60.000 8.08 0.00 0.00 4.26
605 606 0.819666 CCGGGCCTAGATTTTGAGCC 60.820 60.000 0.84 0.00 43.09 4.70
606 607 0.181350 CGGGCCTAGATTTTGAGCCT 59.819 55.000 0.84 0.00 43.36 4.58
607 608 1.416401 CGGGCCTAGATTTTGAGCCTA 59.584 52.381 0.84 0.00 43.36 3.93
608 609 2.158813 CGGGCCTAGATTTTGAGCCTAA 60.159 50.000 0.84 0.00 43.36 2.69
609 610 3.684413 CGGGCCTAGATTTTGAGCCTAAA 60.684 47.826 0.84 0.00 43.36 1.85
610 611 3.885901 GGGCCTAGATTTTGAGCCTAAAG 59.114 47.826 0.84 0.00 43.36 1.85
611 612 3.885901 GGCCTAGATTTTGAGCCTAAAGG 59.114 47.826 0.00 0.00 40.57 3.11
634 635 4.032987 CCGGGCCCGTCGTTTTTG 62.033 66.667 40.52 20.46 37.81 2.44
635 636 4.693525 CGGGCCCGTCGTTTTTGC 62.694 66.667 36.64 0.00 34.35 3.68
636 637 3.597728 GGGCCCGTCGTTTTTGCA 61.598 61.111 5.69 0.00 0.00 4.08
637 638 2.648454 GGCCCGTCGTTTTTGCAT 59.352 55.556 0.00 0.00 0.00 3.96
638 639 1.006688 GGCCCGTCGTTTTTGCATT 60.007 52.632 0.00 0.00 0.00 3.56
639 640 0.598942 GGCCCGTCGTTTTTGCATTT 60.599 50.000 0.00 0.00 0.00 2.32
640 641 1.213491 GCCCGTCGTTTTTGCATTTT 58.787 45.000 0.00 0.00 0.00 1.82
641 642 1.191425 GCCCGTCGTTTTTGCATTTTC 59.809 47.619 0.00 0.00 0.00 2.29
642 643 1.790043 CCCGTCGTTTTTGCATTTTCC 59.210 47.619 0.00 0.00 0.00 3.13
643 644 2.544903 CCCGTCGTTTTTGCATTTTCCT 60.545 45.455 0.00 0.00 0.00 3.36
644 645 3.304794 CCCGTCGTTTTTGCATTTTCCTA 60.305 43.478 0.00 0.00 0.00 2.94
645 646 4.291783 CCGTCGTTTTTGCATTTTCCTAA 58.708 39.130 0.00 0.00 0.00 2.69
646 647 4.740695 CCGTCGTTTTTGCATTTTCCTAAA 59.259 37.500 0.00 0.00 0.00 1.85
647 648 5.108027 CCGTCGTTTTTGCATTTTCCTAAAG 60.108 40.000 0.00 0.00 0.00 1.85
648 649 5.108027 CGTCGTTTTTGCATTTTCCTAAAGG 60.108 40.000 0.00 0.00 0.00 3.11
649 650 5.176774 GTCGTTTTTGCATTTTCCTAAAGGG 59.823 40.000 0.00 0.00 35.41 3.95
650 651 4.450757 CGTTTTTGCATTTTCCTAAAGGGG 59.549 41.667 0.00 0.00 35.41 4.79
651 652 3.694043 TTTGCATTTTCCTAAAGGGGC 57.306 42.857 0.00 0.00 35.41 5.80
652 653 1.567357 TGCATTTTCCTAAAGGGGCC 58.433 50.000 0.00 0.00 35.41 5.80
653 654 0.830648 GCATTTTCCTAAAGGGGCCC 59.169 55.000 17.12 17.12 35.41 5.80
654 655 1.111277 CATTTTCCTAAAGGGGCCCG 58.889 55.000 18.95 1.73 35.41 6.13
655 656 0.032515 ATTTTCCTAAAGGGGCCCGG 60.033 55.000 18.95 12.85 35.41 5.73
656 657 1.437013 TTTTCCTAAAGGGGCCCGGT 61.437 55.000 18.95 11.91 35.41 5.28
657 658 2.144859 TTTCCTAAAGGGGCCCGGTG 62.145 60.000 18.95 8.90 35.41 4.94
658 659 4.123545 CCTAAAGGGGCCCGGTGG 62.124 72.222 18.95 14.40 0.00 4.61
661 662 3.576078 TAAAGGGGCCCGGTGGGTA 62.576 63.158 18.95 1.27 46.51 3.69
662 663 2.861586 TAAAGGGGCCCGGTGGGTAT 62.862 60.000 18.95 0.00 46.51 2.73
663 664 4.771745 AGGGGCCCGGTGGGTATT 62.772 66.667 18.95 0.00 46.51 1.89
664 665 2.773485 GGGGCCCGGTGGGTATTA 60.773 66.667 17.79 0.00 46.51 0.98
665 666 2.512397 GGGCCCGGTGGGTATTAC 59.488 66.667 5.69 0.00 46.51 1.89
666 667 2.109593 GGCCCGGTGGGTATTACG 59.890 66.667 0.00 0.00 46.51 3.18
667 668 2.589724 GCCCGGTGGGTATTACGC 60.590 66.667 0.00 4.04 46.51 4.42
668 669 2.279650 CCCGGTGGGTATTACGCG 60.280 66.667 3.53 3.53 38.25 6.01
669 670 2.495866 CCGGTGGGTATTACGCGT 59.504 61.111 19.17 19.17 33.25 6.01
670 671 1.879430 CCGGTGGGTATTACGCGTG 60.879 63.158 24.59 0.00 33.25 5.34
671 672 2.519175 CGGTGGGTATTACGCGTGC 61.519 63.158 24.59 9.17 33.25 5.34
672 673 2.519175 GGTGGGTATTACGCGTGCG 61.519 63.158 24.59 13.39 46.03 5.34
673 674 2.202770 TGGGTATTACGCGTGCGG 60.203 61.111 24.59 0.68 44.69 5.69
674 675 3.633089 GGGTATTACGCGTGCGGC 61.633 66.667 24.59 9.55 44.69 6.53
675 676 3.633089 GGTATTACGCGTGCGGCC 61.633 66.667 24.59 15.04 44.69 6.13
676 677 3.979961 GTATTACGCGTGCGGCCG 61.980 66.667 24.05 24.05 44.69 6.13
695 696 3.155750 GCATGGGCCCAAAAACCA 58.844 55.556 32.58 2.38 38.88 3.67
696 697 1.003476 GCATGGGCCCAAAAACCAG 60.003 57.895 32.58 13.57 37.75 4.00
697 698 1.678724 CATGGGCCCAAAAACCAGG 59.321 57.895 32.58 0.00 37.75 4.45
698 699 2.223443 ATGGGCCCAAAAACCAGGC 61.223 57.895 32.58 0.00 46.37 4.85
701 702 2.526624 GCCCAAAAACCAGGCCCT 60.527 61.111 0.00 0.00 41.00 5.19
702 703 1.229051 GCCCAAAAACCAGGCCCTA 60.229 57.895 0.00 0.00 41.00 3.53
703 704 0.617535 GCCCAAAAACCAGGCCCTAT 60.618 55.000 0.00 0.00 41.00 2.57
704 705 1.194218 CCCAAAAACCAGGCCCTATG 58.806 55.000 0.00 0.00 0.00 2.23
705 706 1.194218 CCAAAAACCAGGCCCTATGG 58.806 55.000 7.96 7.96 43.87 2.74
731 732 2.526624 GGCTGGGCCTGGGTTTTT 60.527 61.111 12.70 0.00 46.69 1.94
746 747 1.067250 TTTTTGCGTCTGGCTTGGC 59.933 52.632 0.00 0.00 44.05 4.52
747 748 1.391157 TTTTTGCGTCTGGCTTGGCT 61.391 50.000 0.00 0.00 44.05 4.75
748 749 0.536233 TTTTGCGTCTGGCTTGGCTA 60.536 50.000 0.00 0.00 44.05 3.93
749 750 0.955428 TTTGCGTCTGGCTTGGCTAG 60.955 55.000 0.00 0.00 44.05 3.42
750 751 2.512515 GCGTCTGGCTTGGCTAGG 60.513 66.667 3.28 0.00 37.73 3.02
772 773 3.793060 CCCCGAGGTATAGCCAGG 58.207 66.667 0.00 2.43 40.61 4.45
773 774 3.793060 CCCGAGGTATAGCCAGGG 58.207 66.667 15.26 15.26 46.11 4.45
774 775 1.152312 CCCGAGGTATAGCCAGGGT 60.152 63.158 18.98 0.00 46.15 4.34
775 776 0.113776 CCCGAGGTATAGCCAGGGTA 59.886 60.000 18.98 0.00 46.15 3.69
776 777 1.273098 CCCGAGGTATAGCCAGGGTAT 60.273 57.143 15.63 15.63 46.15 2.73
777 778 2.024655 CCCGAGGTATAGCCAGGGTATA 60.025 54.545 18.98 13.57 46.15 1.47
819 820 2.881352 CTCTCGTCTTTCGGCCGC 60.881 66.667 23.51 4.66 40.32 6.53
820 821 3.343788 CTCTCGTCTTTCGGCCGCT 62.344 63.158 23.51 0.00 40.32 5.52
828 829 0.652592 CTTTCGGCCGCTATCACTTG 59.347 55.000 23.51 0.00 0.00 3.16
829 830 0.742990 TTTCGGCCGCTATCACTTGG 60.743 55.000 23.51 0.00 0.00 3.61
874 875 4.324331 GGAAGAAGGCCCAGTTAACTACAT 60.324 45.833 8.04 0.00 0.00 2.29
876 877 2.420058 AGGCCCAGTTAACTACATGC 57.580 50.000 8.04 8.34 0.00 4.06
881 882 2.616960 CCAGTTAACTACATGCGAGCA 58.383 47.619 8.04 0.00 0.00 4.26
912 913 0.604511 TTTTCTTCGTCCCGGCCTTC 60.605 55.000 0.00 0.00 0.00 3.46
956 958 3.714487 ATGGAAATCCCCCACGCCG 62.714 63.158 0.00 0.00 36.36 6.46
1308 1314 2.885644 CAGGCGAACGTCATCCGG 60.886 66.667 0.00 0.00 42.24 5.14
1422 1435 7.582667 TTAACGGACTCTCTGAATCATGATA 57.417 36.000 9.04 0.00 0.00 2.15
1558 1573 3.461773 AGTGGATCGGGTGAGGCG 61.462 66.667 0.00 0.00 0.00 5.52
1566 1581 0.322322 TCGGGTGAGGCGTATTTGTT 59.678 50.000 0.00 0.00 0.00 2.83
1567 1582 1.161843 CGGGTGAGGCGTATTTGTTT 58.838 50.000 0.00 0.00 0.00 2.83
1568 1583 2.028294 TCGGGTGAGGCGTATTTGTTTA 60.028 45.455 0.00 0.00 0.00 2.01
1596 1611 1.665735 GCTGCACCCACACGTATTTTG 60.666 52.381 0.00 0.00 0.00 2.44
1661 1676 0.040351 TCTGACTGGCTGGTAGCTCT 59.960 55.000 0.00 0.00 41.99 4.09
1686 1703 6.038603 TCAACTTTTTCTCACCACAGAATCTG 59.961 38.462 8.98 8.98 37.52 2.90
1711 1728 2.747446 TGTCTTTCGCTTTCATAAGGCC 59.253 45.455 0.00 0.00 31.76 5.19
1720 1737 6.296026 TCGCTTTCATAAGGCCAGTTATAAT 58.704 36.000 5.01 0.00 31.76 1.28
1765 1782 3.815962 CAGGAATGGCTCAGAATCTGATG 59.184 47.826 13.93 9.04 39.92 3.07
1800 2190 2.283298 AGCACTGCCAGATTTATCACG 58.717 47.619 0.00 0.00 0.00 4.35
1844 2241 8.563732 TCGTGTCTTCAAAATGATACAAAATCA 58.436 29.630 0.00 0.00 28.65 2.57
1900 2317 1.095228 ACTCACACCACAAAGGCACG 61.095 55.000 0.00 0.00 43.14 5.34
1978 2462 5.815740 TCTCTTTTCTGTATAACCAATCGCC 59.184 40.000 0.00 0.00 0.00 5.54
1998 2484 8.839310 ATCGCCAAATATCTATAGCATATTCC 57.161 34.615 13.34 7.90 0.00 3.01
2016 3403 7.665559 GCATATTCCTGGTAATGGAAGATAACA 59.334 37.037 2.87 0.00 45.43 2.41
2017 3404 9.224267 CATATTCCTGGTAATGGAAGATAACAG 57.776 37.037 2.87 0.00 45.43 3.16
2142 3555 1.896220 TCAAACATGACCCTGAGCAC 58.104 50.000 0.00 0.00 0.00 4.40
2188 3601 1.565759 CCAACCAGGGATTCTGATGGA 59.434 52.381 1.43 0.00 45.26 3.41
2200 3613 6.233434 GGATTCTGATGGATGCTGTACATAA 58.767 40.000 0.00 0.00 39.84 1.90
2202 3615 7.392673 GGATTCTGATGGATGCTGTACATAATT 59.607 37.037 0.00 0.00 39.84 1.40
2204 3617 5.471116 TCTGATGGATGCTGTACATAATTGC 59.529 40.000 0.00 0.00 39.84 3.56
2249 3662 6.257849 TGCGGATAGTTTACTATTGCAGAAAG 59.742 38.462 18.69 0.00 41.42 2.62
2406 3827 1.808945 GGAAACACTCTGCTGTCATGG 59.191 52.381 0.00 0.00 0.00 3.66
2713 4134 3.817647 AGAAGACACTTTCAACTGATGGC 59.182 43.478 0.00 0.00 0.00 4.40
2825 4259 4.221530 ACCTATTGTACTAGTAGGGCCAC 58.778 47.826 6.18 1.63 41.73 5.01
2834 4268 0.325390 AGTAGGGCCACTGGAGGTAC 60.325 60.000 6.18 0.00 0.00 3.34
2843 4284 1.134788 CACTGGAGGTACCGTCATTCC 60.135 57.143 6.18 8.24 42.61 3.01
2849 4290 2.756760 GAGGTACCGTCATTCCTGTGTA 59.243 50.000 6.18 0.00 0.00 2.90
2894 4340 3.054728 TCCAGAAGACCAGTTTGACACAA 60.055 43.478 0.00 0.00 0.00 3.33
3313 4772 1.887956 GCCAGATGGGATGTGTTGTGT 60.888 52.381 0.12 0.00 40.01 3.72
3314 4773 1.814394 CCAGATGGGATGTGTTGTGTG 59.186 52.381 0.00 0.00 40.01 3.82
3369 4828 6.434028 ACTTGAAATGCCTGCAAGAGTTAATA 59.566 34.615 9.98 0.00 41.03 0.98
3628 5089 5.009310 GGTTCAAAGGAATTTCGTACCTTGT 59.991 40.000 0.00 0.00 42.25 3.16
3629 5090 6.205270 GGTTCAAAGGAATTTCGTACCTTGTA 59.795 38.462 0.00 0.00 42.25 2.41
3674 8001 6.071952 CCATACTTGGAACATTAGTTTGCTGT 60.072 38.462 0.00 0.00 46.92 4.40
3701 8028 6.015519 ACACCTTTGCTGCATTTTCTGTAATA 60.016 34.615 1.84 0.00 0.00 0.98
3702 8029 6.867816 CACCTTTGCTGCATTTTCTGTAATAA 59.132 34.615 1.84 0.00 0.00 1.40
3795 8122 1.137825 GGCGTCAAGACTCTCCTCG 59.862 63.158 0.00 0.00 0.00 4.63
3796 8123 1.515304 GCGTCAAGACTCTCCTCGC 60.515 63.158 0.00 0.00 35.86 5.03
4137 8495 1.605710 CTCAACTGGAACAAGTGGCAG 59.394 52.381 0.00 0.00 38.70 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.321333 CCGCACACACATACGGCAA 61.321 57.895 0.00 0.00 39.08 4.52
1 2 2.740440 CCGCACACACATACGGCA 60.740 61.111 0.00 0.00 39.08 5.69
4 5 1.634757 ATGCACCGCACACACATACG 61.635 55.000 0.00 0.00 43.04 3.06
5 6 0.179192 CATGCACCGCACACACATAC 60.179 55.000 0.00 0.00 43.04 2.39
6 7 1.304509 CCATGCACCGCACACACATA 61.305 55.000 0.00 0.00 43.04 2.29
7 8 2.628696 CCATGCACCGCACACACAT 61.629 57.895 0.00 0.00 43.04 3.21
8 9 3.285982 CCATGCACCGCACACACA 61.286 61.111 0.00 0.00 43.04 3.72
9 10 4.705519 GCCATGCACCGCACACAC 62.706 66.667 0.00 0.00 43.04 3.82
17 18 2.813226 TTACGGACTGGCCATGCACC 62.813 60.000 5.51 6.74 35.94 5.01
18 19 1.376683 TTACGGACTGGCCATGCAC 60.377 57.895 5.51 0.00 35.94 4.57
19 20 1.376683 GTTACGGACTGGCCATGCA 60.377 57.895 5.51 0.00 35.94 3.96
20 21 2.112815 GGTTACGGACTGGCCATGC 61.113 63.158 5.51 0.01 35.94 4.06
21 22 0.744414 CAGGTTACGGACTGGCCATG 60.744 60.000 5.51 2.78 35.94 3.66
22 23 1.602237 CAGGTTACGGACTGGCCAT 59.398 57.895 5.51 0.00 35.94 4.40
23 24 2.589157 CCAGGTTACGGACTGGCCA 61.589 63.158 4.71 4.71 46.78 5.36
24 25 2.267961 CCAGGTTACGGACTGGCC 59.732 66.667 0.00 0.00 46.78 5.36
27 28 1.741770 GCTGCCAGGTTACGGACTG 60.742 63.158 0.00 0.00 34.54 3.51
28 29 0.613853 TAGCTGCCAGGTTACGGACT 60.614 55.000 0.00 0.00 0.00 3.85
29 30 0.459759 GTAGCTGCCAGGTTACGGAC 60.460 60.000 0.00 0.00 0.00 4.79
30 31 0.613853 AGTAGCTGCCAGGTTACGGA 60.614 55.000 0.00 0.00 0.00 4.69
31 32 1.108776 TAGTAGCTGCCAGGTTACGG 58.891 55.000 0.00 0.00 0.00 4.02
32 33 2.953466 TTAGTAGCTGCCAGGTTACG 57.047 50.000 0.00 0.00 0.00 3.18
33 34 2.872858 GCATTAGTAGCTGCCAGGTTAC 59.127 50.000 0.00 0.00 32.15 2.50
34 35 2.483013 CGCATTAGTAGCTGCCAGGTTA 60.483 50.000 0.00 0.00 34.89 2.85
35 36 1.743772 CGCATTAGTAGCTGCCAGGTT 60.744 52.381 0.00 0.00 34.89 3.50
36 37 0.179073 CGCATTAGTAGCTGCCAGGT 60.179 55.000 0.54 0.54 34.89 4.00
37 38 0.104855 TCGCATTAGTAGCTGCCAGG 59.895 55.000 0.00 0.00 34.89 4.45
38 39 1.212616 GTCGCATTAGTAGCTGCCAG 58.787 55.000 0.00 0.00 34.89 4.85
39 40 0.527600 CGTCGCATTAGTAGCTGCCA 60.528 55.000 0.00 0.00 34.89 4.92
40 41 1.215655 CCGTCGCATTAGTAGCTGCC 61.216 60.000 0.00 0.00 34.89 4.85
41 42 0.248907 TCCGTCGCATTAGTAGCTGC 60.249 55.000 0.00 0.00 35.02 5.25
42 43 1.478137 GTCCGTCGCATTAGTAGCTG 58.522 55.000 0.00 0.00 0.00 4.24
43 44 0.029035 CGTCCGTCGCATTAGTAGCT 59.971 55.000 0.00 0.00 0.00 3.32
44 45 0.028505 TCGTCCGTCGCATTAGTAGC 59.971 55.000 0.00 0.00 39.67 3.58
45 46 2.463553 TTCGTCCGTCGCATTAGTAG 57.536 50.000 0.00 0.00 39.67 2.57
46 47 2.542205 CCATTCGTCCGTCGCATTAGTA 60.542 50.000 0.00 0.00 39.67 1.82
47 48 1.556564 CATTCGTCCGTCGCATTAGT 58.443 50.000 0.00 0.00 39.67 2.24
48 49 0.852777 CCATTCGTCCGTCGCATTAG 59.147 55.000 0.00 0.00 39.67 1.73
49 50 0.456628 TCCATTCGTCCGTCGCATTA 59.543 50.000 0.00 0.00 39.67 1.90
50 51 0.806102 CTCCATTCGTCCGTCGCATT 60.806 55.000 0.00 0.00 39.67 3.56
51 52 1.226974 CTCCATTCGTCCGTCGCAT 60.227 57.895 0.00 0.00 39.67 4.73
52 53 1.868987 TTCTCCATTCGTCCGTCGCA 61.869 55.000 0.00 0.00 39.67 5.10
53 54 0.734942 TTTCTCCATTCGTCCGTCGC 60.735 55.000 0.00 0.00 39.67 5.19
54 55 1.588404 CATTTCTCCATTCGTCCGTCG 59.412 52.381 0.00 0.00 41.41 5.12
55 56 2.348666 CACATTTCTCCATTCGTCCGTC 59.651 50.000 0.00 0.00 0.00 4.79
56 57 2.028476 TCACATTTCTCCATTCGTCCGT 60.028 45.455 0.00 0.00 0.00 4.69
57 58 2.604914 CTCACATTTCTCCATTCGTCCG 59.395 50.000 0.00 0.00 0.00 4.79
58 59 2.939103 CCTCACATTTCTCCATTCGTCC 59.061 50.000 0.00 0.00 0.00 4.79
59 60 3.372206 CACCTCACATTTCTCCATTCGTC 59.628 47.826 0.00 0.00 0.00 4.20
60 61 3.338249 CACCTCACATTTCTCCATTCGT 58.662 45.455 0.00 0.00 0.00 3.85
61 62 2.096496 GCACCTCACATTTCTCCATTCG 59.904 50.000 0.00 0.00 0.00 3.34
62 63 2.424956 GGCACCTCACATTTCTCCATTC 59.575 50.000 0.00 0.00 0.00 2.67
63 64 2.225091 TGGCACCTCACATTTCTCCATT 60.225 45.455 0.00 0.00 0.00 3.16
64 65 1.355381 TGGCACCTCACATTTCTCCAT 59.645 47.619 0.00 0.00 0.00 3.41
65 66 0.770499 TGGCACCTCACATTTCTCCA 59.230 50.000 0.00 0.00 0.00 3.86
66 67 2.019984 GATGGCACCTCACATTTCTCC 58.980 52.381 0.00 0.00 0.00 3.71
67 68 2.681848 CTGATGGCACCTCACATTTCTC 59.318 50.000 0.00 0.00 0.00 2.87
68 69 2.619849 CCTGATGGCACCTCACATTTCT 60.620 50.000 0.00 0.00 0.00 2.52
69 70 1.747355 CCTGATGGCACCTCACATTTC 59.253 52.381 0.00 0.00 0.00 2.17
70 71 1.355381 TCCTGATGGCACCTCACATTT 59.645 47.619 0.00 0.00 0.00 2.32
71 72 0.994247 TCCTGATGGCACCTCACATT 59.006 50.000 0.00 0.00 0.00 2.71
72 73 1.219773 ATCCTGATGGCACCTCACAT 58.780 50.000 0.00 0.00 0.00 3.21
73 74 0.994247 AATCCTGATGGCACCTCACA 59.006 50.000 0.00 0.00 0.00 3.58
74 75 1.386533 CAATCCTGATGGCACCTCAC 58.613 55.000 0.00 0.00 0.00 3.51
75 76 0.256752 CCAATCCTGATGGCACCTCA 59.743 55.000 0.00 0.00 0.00 3.86
76 77 0.257039 ACCAATCCTGATGGCACCTC 59.743 55.000 0.00 0.00 41.89 3.85
77 78 0.257039 GACCAATCCTGATGGCACCT 59.743 55.000 0.00 0.00 41.89 4.00
78 79 0.753111 GGACCAATCCTGATGGCACC 60.753 60.000 0.00 0.00 42.45 5.01
79 80 2.799176 GGACCAATCCTGATGGCAC 58.201 57.895 0.00 0.00 42.45 5.01
88 89 4.254492 GAGTAGTCAACAAGGACCAATCC 58.746 47.826 0.00 0.00 46.69 3.01
89 90 4.254492 GGAGTAGTCAACAAGGACCAATC 58.746 47.826 0.00 0.00 38.59 2.67
90 91 3.306780 CGGAGTAGTCAACAAGGACCAAT 60.307 47.826 0.00 0.00 38.59 3.16
91 92 2.036733 CGGAGTAGTCAACAAGGACCAA 59.963 50.000 0.00 0.00 38.59 3.67
92 93 1.616865 CGGAGTAGTCAACAAGGACCA 59.383 52.381 0.00 0.00 38.59 4.02
93 94 1.672145 GCGGAGTAGTCAACAAGGACC 60.672 57.143 0.00 0.00 38.59 4.46
94 95 1.000506 TGCGGAGTAGTCAACAAGGAC 59.999 52.381 0.00 0.00 38.08 3.85
95 96 1.000506 GTGCGGAGTAGTCAACAAGGA 59.999 52.381 0.00 0.00 0.00 3.36
96 97 1.000955 AGTGCGGAGTAGTCAACAAGG 59.999 52.381 0.00 0.00 0.00 3.61
97 98 2.061773 CAGTGCGGAGTAGTCAACAAG 58.938 52.381 0.00 0.00 0.00 3.16
98 99 1.872237 GCAGTGCGGAGTAGTCAACAA 60.872 52.381 0.00 0.00 0.00 2.83
99 100 0.319555 GCAGTGCGGAGTAGTCAACA 60.320 55.000 0.00 0.00 0.00 3.33
100 101 2.446341 GCAGTGCGGAGTAGTCAAC 58.554 57.895 0.00 0.00 0.00 3.18
101 102 4.988065 GCAGTGCGGAGTAGTCAA 57.012 55.556 0.00 0.00 0.00 3.18
131 132 3.647649 GACCCCCGCAATTTGCAGC 62.648 63.158 20.56 0.00 45.36 5.25
132 133 2.274645 TGACCCCCGCAATTTGCAG 61.275 57.895 20.56 9.78 45.36 4.41
133 134 2.203552 TGACCCCCGCAATTTGCA 60.204 55.556 20.56 0.00 45.36 4.08
134 135 2.261361 GTGACCCCCGCAATTTGC 59.739 61.111 11.42 11.42 40.69 3.68
135 136 0.322997 TAGGTGACCCCCGCAATTTG 60.323 55.000 0.00 0.00 0.00 2.32
136 137 0.406361 TTAGGTGACCCCCGCAATTT 59.594 50.000 0.00 0.00 0.00 1.82
137 138 0.629058 ATTAGGTGACCCCCGCAATT 59.371 50.000 0.00 0.00 0.00 2.32
138 139 0.106719 CATTAGGTGACCCCCGCAAT 60.107 55.000 0.00 0.00 0.00 3.56
139 140 1.301623 CATTAGGTGACCCCCGCAA 59.698 57.895 0.00 0.00 0.00 4.85
140 141 2.675242 CCATTAGGTGACCCCCGCA 61.675 63.158 0.00 0.00 0.00 5.69
141 142 2.192175 CCATTAGGTGACCCCCGC 59.808 66.667 0.00 0.00 0.00 6.13
150 151 7.582438 GAGAAATCCTCAGAAAGACCATTAGGT 60.582 40.741 0.00 0.00 45.82 3.08
151 152 6.657875 AGAAATCCTCAGAAAGACCATTAGG 58.342 40.000 0.00 0.00 42.21 2.69
152 153 7.334090 TGAGAAATCCTCAGAAAGACCATTAG 58.666 38.462 0.00 0.00 46.38 1.73
153 154 7.257790 TGAGAAATCCTCAGAAAGACCATTA 57.742 36.000 0.00 0.00 46.38 1.90
154 155 6.131972 TGAGAAATCCTCAGAAAGACCATT 57.868 37.500 0.00 0.00 46.38 3.16
155 156 5.768980 TGAGAAATCCTCAGAAAGACCAT 57.231 39.130 0.00 0.00 46.38 3.55
164 165 7.615455 GCAATTGGCTGTGAGAAATCCTCAG 62.615 48.000 7.72 0.00 45.35 3.35
165 166 5.880584 GCAATTGGCTGTGAGAAATCCTCA 61.881 45.833 7.72 0.00 43.85 3.86
166 167 3.428589 GCAATTGGCTGTGAGAAATCCTC 60.429 47.826 7.72 0.00 39.97 3.71
167 168 2.494870 GCAATTGGCTGTGAGAAATCCT 59.505 45.455 7.72 0.00 40.25 3.24
168 169 2.884827 GCAATTGGCTGTGAGAAATCC 58.115 47.619 7.72 0.00 40.25 3.01
180 181 0.730494 GTGACGCTCAAGCAATTGGC 60.730 55.000 7.72 0.38 42.21 4.52
181 182 0.877071 AGTGACGCTCAAGCAATTGG 59.123 50.000 7.72 0.00 42.21 3.16
182 183 2.578495 GAAGTGACGCTCAAGCAATTG 58.422 47.619 0.00 0.00 42.21 2.32
183 184 1.537202 GGAAGTGACGCTCAAGCAATT 59.463 47.619 2.50 0.00 42.21 2.32
184 185 1.160137 GGAAGTGACGCTCAAGCAAT 58.840 50.000 2.50 0.00 42.21 3.56
185 186 0.106708 AGGAAGTGACGCTCAAGCAA 59.893 50.000 2.50 0.00 42.21 3.91
186 187 0.106708 AAGGAAGTGACGCTCAAGCA 59.893 50.000 2.50 0.00 42.21 3.91
187 188 0.793250 GAAGGAAGTGACGCTCAAGC 59.207 55.000 0.00 0.00 37.78 4.01
188 189 2.154854 TGAAGGAAGTGACGCTCAAG 57.845 50.000 0.00 0.00 0.00 3.02
189 190 2.037121 TCATGAAGGAAGTGACGCTCAA 59.963 45.455 0.00 0.00 0.00 3.02
190 191 1.618343 TCATGAAGGAAGTGACGCTCA 59.382 47.619 0.00 0.00 0.00 4.26
191 192 2.370281 TCATGAAGGAAGTGACGCTC 57.630 50.000 0.00 0.00 0.00 5.03
192 193 2.693069 CTTCATGAAGGAAGTGACGCT 58.307 47.619 25.14 0.00 39.51 5.07
203 204 5.782893 TTAACAACAACCCCTTCATGAAG 57.217 39.130 25.75 25.75 38.14 3.02
204 205 5.894393 TCTTTAACAACAACCCCTTCATGAA 59.106 36.000 8.12 8.12 0.00 2.57
205 206 5.450453 TCTTTAACAACAACCCCTTCATGA 58.550 37.500 0.00 0.00 0.00 3.07
206 207 5.782893 TCTTTAACAACAACCCCTTCATG 57.217 39.130 0.00 0.00 0.00 3.07
207 208 6.782494 AGATTCTTTAACAACAACCCCTTCAT 59.218 34.615 0.00 0.00 0.00 2.57
208 209 6.133356 AGATTCTTTAACAACAACCCCTTCA 58.867 36.000 0.00 0.00 0.00 3.02
209 210 6.567891 CGAGATTCTTTAACAACAACCCCTTC 60.568 42.308 0.00 0.00 0.00 3.46
210 211 5.240844 CGAGATTCTTTAACAACAACCCCTT 59.759 40.000 0.00 0.00 0.00 3.95
211 212 4.760204 CGAGATTCTTTAACAACAACCCCT 59.240 41.667 0.00 0.00 0.00 4.79
212 213 4.615223 GCGAGATTCTTTAACAACAACCCC 60.615 45.833 0.00 0.00 0.00 4.95
213 214 4.473199 GCGAGATTCTTTAACAACAACCC 58.527 43.478 0.00 0.00 0.00 4.11
214 215 4.473199 GGCGAGATTCTTTAACAACAACC 58.527 43.478 0.00 0.00 0.00 3.77
215 216 4.148891 CGGCGAGATTCTTTAACAACAAC 58.851 43.478 0.00 0.00 0.00 3.32
216 217 3.810941 ACGGCGAGATTCTTTAACAACAA 59.189 39.130 16.62 0.00 0.00 2.83
217 218 3.395639 ACGGCGAGATTCTTTAACAACA 58.604 40.909 16.62 0.00 0.00 3.33
218 219 3.181523 GGACGGCGAGATTCTTTAACAAC 60.182 47.826 16.62 0.00 0.00 3.32
219 220 2.997986 GGACGGCGAGATTCTTTAACAA 59.002 45.455 16.62 0.00 0.00 2.83
220 221 2.613691 GGACGGCGAGATTCTTTAACA 58.386 47.619 16.62 0.00 0.00 2.41
221 222 1.587034 CGGACGGCGAGATTCTTTAAC 59.413 52.381 16.62 0.00 0.00 2.01
222 223 1.203052 ACGGACGGCGAGATTCTTTAA 59.797 47.619 16.62 0.00 0.00 1.52
223 224 0.813184 ACGGACGGCGAGATTCTTTA 59.187 50.000 16.62 0.00 0.00 1.85
224 225 0.037605 AACGGACGGCGAGATTCTTT 60.038 50.000 16.62 0.00 0.00 2.52
225 226 0.037605 AAACGGACGGCGAGATTCTT 60.038 50.000 16.62 0.00 0.00 2.52
226 227 0.736325 CAAACGGACGGCGAGATTCT 60.736 55.000 16.62 0.00 0.00 2.40
227 228 0.734942 TCAAACGGACGGCGAGATTC 60.735 55.000 16.62 0.00 0.00 2.52
228 229 0.108329 ATCAAACGGACGGCGAGATT 60.108 50.000 16.62 2.54 0.00 2.40
229 230 0.108329 AATCAAACGGACGGCGAGAT 60.108 50.000 16.62 2.12 0.00 2.75
230 231 0.320073 AAATCAAACGGACGGCGAGA 60.320 50.000 16.62 0.00 0.00 4.04
231 232 0.094730 GAAATCAAACGGACGGCGAG 59.905 55.000 16.62 7.10 0.00 5.03
232 233 0.600518 TGAAATCAAACGGACGGCGA 60.601 50.000 16.62 0.00 0.00 5.54
233 234 0.446222 ATGAAATCAAACGGACGGCG 59.554 50.000 4.80 4.80 0.00 6.46
234 235 2.174060 GATGAAATCAAACGGACGGC 57.826 50.000 0.00 0.00 44.70 5.68
245 246 3.488047 CGCACCAACCATCTGATGAAATC 60.488 47.826 18.92 1.26 45.83 2.17
246 247 2.424601 CGCACCAACCATCTGATGAAAT 59.575 45.455 18.92 1.52 0.00 2.17
247 248 1.811965 CGCACCAACCATCTGATGAAA 59.188 47.619 18.92 0.00 0.00 2.69
248 249 1.452110 CGCACCAACCATCTGATGAA 58.548 50.000 18.92 0.00 0.00 2.57
249 250 0.392863 CCGCACCAACCATCTGATGA 60.393 55.000 18.92 0.00 0.00 2.92
250 251 1.996786 GCCGCACCAACCATCTGATG 61.997 60.000 10.71 10.71 0.00 3.07
251 252 1.750399 GCCGCACCAACCATCTGAT 60.750 57.895 0.00 0.00 0.00 2.90
252 253 2.359850 GCCGCACCAACCATCTGA 60.360 61.111 0.00 0.00 0.00 3.27
253 254 3.443045 GGCCGCACCAACCATCTG 61.443 66.667 0.00 0.00 38.86 2.90
262 263 3.255642 ACAATAATTATCATGGCCGCACC 59.744 43.478 0.00 0.00 39.84 5.01
263 264 4.503741 ACAATAATTATCATGGCCGCAC 57.496 40.909 0.00 0.00 0.00 5.34
264 265 5.312895 ACTACAATAATTATCATGGCCGCA 58.687 37.500 0.00 0.00 0.00 5.69
265 266 5.880054 ACTACAATAATTATCATGGCCGC 57.120 39.130 0.00 0.00 0.00 6.53
266 267 7.648142 ACAAACTACAATAATTATCATGGCCG 58.352 34.615 0.00 0.00 0.00 6.13
267 268 7.803189 CGACAAACTACAATAATTATCATGGCC 59.197 37.037 0.00 0.00 0.00 5.36
268 269 8.556194 TCGACAAACTACAATAATTATCATGGC 58.444 33.333 0.00 0.00 0.00 4.40
278 279 8.928733 GGTTCTACAATCGACAAACTACAATAA 58.071 33.333 0.00 0.00 0.00 1.40
279 280 7.546667 GGGTTCTACAATCGACAAACTACAATA 59.453 37.037 0.00 0.00 0.00 1.90
280 281 6.370718 GGGTTCTACAATCGACAAACTACAAT 59.629 38.462 0.00 0.00 0.00 2.71
281 282 5.697633 GGGTTCTACAATCGACAAACTACAA 59.302 40.000 0.00 0.00 0.00 2.41
282 283 5.232463 GGGTTCTACAATCGACAAACTACA 58.768 41.667 0.00 0.00 0.00 2.74
283 284 4.325472 CGGGTTCTACAATCGACAAACTAC 59.675 45.833 0.00 0.00 0.00 2.73
284 285 4.218200 TCGGGTTCTACAATCGACAAACTA 59.782 41.667 0.00 0.00 0.00 2.24
285 286 3.006110 TCGGGTTCTACAATCGACAAACT 59.994 43.478 0.00 0.00 0.00 2.66
286 287 3.319755 TCGGGTTCTACAATCGACAAAC 58.680 45.455 0.00 0.00 0.00 2.93
287 288 3.663995 TCGGGTTCTACAATCGACAAA 57.336 42.857 0.00 0.00 0.00 2.83
288 289 3.880047 ATCGGGTTCTACAATCGACAA 57.120 42.857 0.00 0.00 32.60 3.18
289 290 3.517602 CAATCGGGTTCTACAATCGACA 58.482 45.455 0.00 0.00 32.60 4.35
290 291 2.284417 GCAATCGGGTTCTACAATCGAC 59.716 50.000 0.00 0.00 32.60 4.20
291 292 2.167693 AGCAATCGGGTTCTACAATCGA 59.832 45.455 0.00 0.00 0.00 3.59
292 293 2.550978 AGCAATCGGGTTCTACAATCG 58.449 47.619 0.00 0.00 0.00 3.34
293 294 4.965119 AAAGCAATCGGGTTCTACAATC 57.035 40.909 0.00 0.00 35.85 2.67
294 295 5.722021 AAAAAGCAATCGGGTTCTACAAT 57.278 34.783 0.00 0.00 35.85 2.71
324 325 7.802738 TGATAATACCAAAGTTATGCGTATGC 58.197 34.615 0.00 0.00 43.20 3.14
346 347 8.806146 ACAGGCTGACAAATAGTAAATTTTGAT 58.194 29.630 23.66 0.00 36.54 2.57
347 348 8.177119 ACAGGCTGACAAATAGTAAATTTTGA 57.823 30.769 23.66 0.00 36.54 2.69
348 349 8.816640 AACAGGCTGACAAATAGTAAATTTTG 57.183 30.769 23.66 0.00 38.49 2.44
349 350 9.830975 AAAACAGGCTGACAAATAGTAAATTTT 57.169 25.926 23.66 9.43 0.00 1.82
350 351 9.830975 AAAAACAGGCTGACAAATAGTAAATTT 57.169 25.926 23.66 3.23 0.00 1.82
374 375 9.457110 CACAACAAACACTAGCATACATAAAAA 57.543 29.630 0.00 0.00 0.00 1.94
375 376 7.593273 GCACAACAAACACTAGCATACATAAAA 59.407 33.333 0.00 0.00 0.00 1.52
376 377 7.081349 GCACAACAAACACTAGCATACATAAA 58.919 34.615 0.00 0.00 0.00 1.40
377 378 6.607689 GCACAACAAACACTAGCATACATAA 58.392 36.000 0.00 0.00 0.00 1.90
378 379 5.163903 CGCACAACAAACACTAGCATACATA 60.164 40.000 0.00 0.00 0.00 2.29
379 380 4.378356 CGCACAACAAACACTAGCATACAT 60.378 41.667 0.00 0.00 0.00 2.29
380 381 3.059257 CGCACAACAAACACTAGCATACA 60.059 43.478 0.00 0.00 0.00 2.29
381 382 3.479006 CGCACAACAAACACTAGCATAC 58.521 45.455 0.00 0.00 0.00 2.39
382 383 2.095969 GCGCACAACAAACACTAGCATA 60.096 45.455 0.30 0.00 0.00 3.14
383 384 1.334960 GCGCACAACAAACACTAGCAT 60.335 47.619 0.30 0.00 0.00 3.79
384 385 0.028770 GCGCACAACAAACACTAGCA 59.971 50.000 0.30 0.00 0.00 3.49
385 386 0.028770 TGCGCACAACAAACACTAGC 59.971 50.000 5.66 0.00 0.00 3.42
386 387 2.686558 ATGCGCACAACAAACACTAG 57.313 45.000 14.90 0.00 0.00 2.57
387 388 2.616376 AGAATGCGCACAACAAACACTA 59.384 40.909 14.90 0.00 0.00 2.74
388 389 1.405105 AGAATGCGCACAACAAACACT 59.595 42.857 14.90 0.00 0.00 3.55
389 390 1.838913 AGAATGCGCACAACAAACAC 58.161 45.000 14.90 0.00 0.00 3.32
390 391 3.699779 TTAGAATGCGCACAACAAACA 57.300 38.095 14.90 0.00 0.00 2.83
391 392 5.574815 AAATTAGAATGCGCACAACAAAC 57.425 34.783 14.90 0.00 0.00 2.93
392 393 5.344665 GCTAAATTAGAATGCGCACAACAAA 59.655 36.000 14.90 4.14 0.00 2.83
393 394 4.856487 GCTAAATTAGAATGCGCACAACAA 59.144 37.500 14.90 5.40 0.00 2.83
394 395 4.083057 TGCTAAATTAGAATGCGCACAACA 60.083 37.500 14.90 0.00 0.00 3.33
395 396 4.411327 TGCTAAATTAGAATGCGCACAAC 58.589 39.130 14.90 7.28 0.00 3.32
396 397 4.394610 TCTGCTAAATTAGAATGCGCACAA 59.605 37.500 14.90 4.97 0.00 3.33
397 398 3.938334 TCTGCTAAATTAGAATGCGCACA 59.062 39.130 14.90 0.00 0.00 4.57
398 399 4.271049 TCTCTGCTAAATTAGAATGCGCAC 59.729 41.667 14.90 0.00 0.00 5.34
399 400 4.271049 GTCTCTGCTAAATTAGAATGCGCA 59.729 41.667 14.96 14.96 0.00 6.09
400 401 4.509600 AGTCTCTGCTAAATTAGAATGCGC 59.490 41.667 0.00 0.00 0.00 6.09
401 402 5.050499 CCAGTCTCTGCTAAATTAGAATGCG 60.050 44.000 3.88 0.00 33.83 4.73
402 403 6.051717 TCCAGTCTCTGCTAAATTAGAATGC 58.948 40.000 3.88 0.00 33.83 3.56
403 404 7.307870 GCATCCAGTCTCTGCTAAATTAGAATG 60.308 40.741 3.88 0.00 34.68 2.67
404 405 6.709846 GCATCCAGTCTCTGCTAAATTAGAAT 59.290 38.462 3.88 0.00 33.15 2.40
405 406 6.051717 GCATCCAGTCTCTGCTAAATTAGAA 58.948 40.000 3.88 0.00 33.15 2.10
406 407 5.605534 GCATCCAGTCTCTGCTAAATTAGA 58.394 41.667 3.88 0.00 33.15 2.10
407 408 4.447054 CGCATCCAGTCTCTGCTAAATTAG 59.553 45.833 0.00 0.00 33.75 1.73
408 409 4.141937 ACGCATCCAGTCTCTGCTAAATTA 60.142 41.667 0.00 0.00 33.75 1.40
409 410 3.201290 CGCATCCAGTCTCTGCTAAATT 58.799 45.455 0.00 0.00 33.75 1.82
410 411 2.169352 ACGCATCCAGTCTCTGCTAAAT 59.831 45.455 0.00 0.00 33.75 1.40
411 412 1.550524 ACGCATCCAGTCTCTGCTAAA 59.449 47.619 0.00 0.00 33.75 1.85
412 413 1.134995 CACGCATCCAGTCTCTGCTAA 60.135 52.381 0.00 0.00 33.75 3.09
413 414 0.457443 CACGCATCCAGTCTCTGCTA 59.543 55.000 0.00 0.00 33.75 3.49
414 415 1.217511 CACGCATCCAGTCTCTGCT 59.782 57.895 0.00 0.00 33.75 4.24
415 416 0.671781 AACACGCATCCAGTCTCTGC 60.672 55.000 0.00 0.00 0.00 4.26
416 417 1.067283 AGAACACGCATCCAGTCTCTG 60.067 52.381 0.00 0.00 0.00 3.35
417 418 1.261480 AGAACACGCATCCAGTCTCT 58.739 50.000 0.00 0.00 0.00 3.10
418 419 2.086054 AAGAACACGCATCCAGTCTC 57.914 50.000 0.00 0.00 0.00 3.36
419 420 2.550830 AAAGAACACGCATCCAGTCT 57.449 45.000 0.00 0.00 0.00 3.24
420 421 3.684788 ACATAAAGAACACGCATCCAGTC 59.315 43.478 0.00 0.00 0.00 3.51
421 422 3.674997 ACATAAAGAACACGCATCCAGT 58.325 40.909 0.00 0.00 0.00 4.00
422 423 4.685169 AACATAAAGAACACGCATCCAG 57.315 40.909 0.00 0.00 0.00 3.86
423 424 4.277174 ACAAACATAAAGAACACGCATCCA 59.723 37.500 0.00 0.00 0.00 3.41
424 425 4.794169 ACAAACATAAAGAACACGCATCC 58.206 39.130 0.00 0.00 0.00 3.51
425 426 6.129194 GGAAACAAACATAAAGAACACGCATC 60.129 38.462 0.00 0.00 0.00 3.91
426 427 5.689961 GGAAACAAACATAAAGAACACGCAT 59.310 36.000 0.00 0.00 0.00 4.73
427 428 5.038033 GGAAACAAACATAAAGAACACGCA 58.962 37.500 0.00 0.00 0.00 5.24
428 429 5.278604 AGGAAACAAACATAAAGAACACGC 58.721 37.500 0.00 0.00 0.00 5.34
429 430 6.725246 AGAGGAAACAAACATAAAGAACACG 58.275 36.000 0.00 0.00 0.00 4.49
433 434 9.691362 GCATTAAGAGGAAACAAACATAAAGAA 57.309 29.630 0.00 0.00 0.00 2.52
434 435 9.077885 AGCATTAAGAGGAAACAAACATAAAGA 57.922 29.630 0.00 0.00 0.00 2.52
435 436 9.696917 AAGCATTAAGAGGAAACAAACATAAAG 57.303 29.630 0.00 0.00 0.00 1.85
436 437 9.691362 GAAGCATTAAGAGGAAACAAACATAAA 57.309 29.630 0.00 0.00 0.00 1.40
437 438 9.077885 AGAAGCATTAAGAGGAAACAAACATAA 57.922 29.630 0.00 0.00 0.00 1.90
438 439 8.635765 AGAAGCATTAAGAGGAAACAAACATA 57.364 30.769 0.00 0.00 0.00 2.29
439 440 7.231317 TGAGAAGCATTAAGAGGAAACAAACAT 59.769 33.333 0.00 0.00 0.00 2.71
440 441 6.545666 TGAGAAGCATTAAGAGGAAACAAACA 59.454 34.615 0.00 0.00 0.00 2.83
441 442 6.970484 TGAGAAGCATTAAGAGGAAACAAAC 58.030 36.000 0.00 0.00 0.00 2.93
442 443 7.765695 ATGAGAAGCATTAAGAGGAAACAAA 57.234 32.000 0.00 0.00 31.73 2.83
443 444 7.094205 GGAATGAGAAGCATTAAGAGGAAACAA 60.094 37.037 0.00 0.00 46.90 2.83
444 445 6.375455 GGAATGAGAAGCATTAAGAGGAAACA 59.625 38.462 0.00 0.00 46.90 2.83
445 446 6.375455 TGGAATGAGAAGCATTAAGAGGAAAC 59.625 38.462 0.00 0.00 46.90 2.78
446 447 6.484288 TGGAATGAGAAGCATTAAGAGGAAA 58.516 36.000 0.00 0.00 46.90 3.13
447 448 6.065976 TGGAATGAGAAGCATTAAGAGGAA 57.934 37.500 0.00 0.00 46.90 3.36
448 449 5.698741 TGGAATGAGAAGCATTAAGAGGA 57.301 39.130 0.00 0.00 46.90 3.71
449 450 6.956202 AATGGAATGAGAAGCATTAAGAGG 57.044 37.500 0.00 0.00 46.90 3.69
456 457 9.947433 TTGATTTAAAAATGGAATGAGAAGCAT 57.053 25.926 0.00 0.00 39.43 3.79
457 458 9.947433 ATTGATTTAAAAATGGAATGAGAAGCA 57.053 25.926 0.00 0.00 0.00 3.91
502 503 2.844348 CCAGGACTAGGCTCCCTAAAAA 59.156 50.000 0.00 0.00 35.49 1.94
503 504 2.478292 CCAGGACTAGGCTCCCTAAAA 58.522 52.381 0.00 0.00 35.49 1.52
504 505 2.176247 CCAGGACTAGGCTCCCTAAA 57.824 55.000 0.00 0.00 35.49 1.85
505 506 3.948425 CCAGGACTAGGCTCCCTAA 57.052 57.895 0.00 0.00 35.49 2.69
513 514 3.125376 GCCCATGGCCAGGACTAGG 62.125 68.421 21.32 12.74 44.06 3.02
514 515 2.512896 GCCCATGGCCAGGACTAG 59.487 66.667 21.32 5.63 44.06 2.57
551 552 3.744719 GTCGGGCTTTTTCGGGCC 61.745 66.667 0.00 0.00 46.89 5.80
552 553 3.744719 GGTCGGGCTTTTTCGGGC 61.745 66.667 0.00 0.00 0.00 6.13
553 554 3.060000 GGGTCGGGCTTTTTCGGG 61.060 66.667 0.00 0.00 0.00 5.14
554 555 3.428282 CGGGTCGGGCTTTTTCGG 61.428 66.667 0.00 0.00 0.00 4.30
555 556 2.357760 TCGGGTCGGGCTTTTTCG 60.358 61.111 0.00 0.00 0.00 3.46
556 557 2.674084 CGTCGGGTCGGGCTTTTTC 61.674 63.158 0.00 0.00 0.00 2.29
557 558 2.667199 CGTCGGGTCGGGCTTTTT 60.667 61.111 0.00 0.00 0.00 1.94
563 564 3.885521 GAGTAGCGTCGGGTCGGG 61.886 72.222 0.00 0.00 0.00 5.14
564 565 3.885521 GGAGTAGCGTCGGGTCGG 61.886 72.222 0.00 0.00 0.00 4.79
565 566 2.823147 AGGAGTAGCGTCGGGTCG 60.823 66.667 0.00 0.00 0.00 4.79
566 567 2.772691 CCAGGAGTAGCGTCGGGTC 61.773 68.421 0.00 0.00 0.00 4.46
567 568 2.754658 CCAGGAGTAGCGTCGGGT 60.755 66.667 0.00 0.00 0.00 5.28
568 569 4.208686 GCCAGGAGTAGCGTCGGG 62.209 72.222 0.00 0.00 0.00 5.14
569 570 4.208686 GGCCAGGAGTAGCGTCGG 62.209 72.222 0.00 0.00 0.00 4.79
570 571 4.208686 GGGCCAGGAGTAGCGTCG 62.209 72.222 4.39 0.00 0.00 5.12
571 572 4.208686 CGGGCCAGGAGTAGCGTC 62.209 72.222 4.39 0.00 0.00 5.19
584 585 0.819666 CTCAAAATCTAGGCCCGGGC 60.820 60.000 38.57 38.57 41.06 6.13
585 586 0.819666 GCTCAAAATCTAGGCCCGGG 60.820 60.000 19.09 19.09 0.00 5.73
586 587 0.819666 GGCTCAAAATCTAGGCCCGG 60.820 60.000 0.00 0.00 37.12 5.73
587 588 0.181350 AGGCTCAAAATCTAGGCCCG 59.819 55.000 0.00 0.00 43.36 6.13
588 589 3.577805 TTAGGCTCAAAATCTAGGCCC 57.422 47.619 0.00 0.00 43.36 5.80
589 590 3.885901 CCTTTAGGCTCAAAATCTAGGCC 59.114 47.826 0.00 0.00 42.74 5.19
617 618 4.032987 CAAAAACGACGGGCCCGG 62.033 66.667 44.99 31.45 44.69 5.73
618 619 4.693525 GCAAAAACGACGGGCCCG 62.694 66.667 42.17 42.17 46.03 6.13
619 620 2.428960 AATGCAAAAACGACGGGCCC 62.429 55.000 13.57 13.57 0.00 5.80
620 621 0.598942 AAATGCAAAAACGACGGGCC 60.599 50.000 0.00 0.00 0.00 5.80
621 622 1.191425 GAAAATGCAAAAACGACGGGC 59.809 47.619 0.00 0.00 0.00 6.13
622 623 1.790043 GGAAAATGCAAAAACGACGGG 59.210 47.619 0.00 0.00 0.00 5.28
623 624 2.738135 AGGAAAATGCAAAAACGACGG 58.262 42.857 0.00 0.00 0.00 4.79
624 625 5.108027 CCTTTAGGAAAATGCAAAAACGACG 60.108 40.000 0.00 0.00 37.39 5.12
625 626 5.176774 CCCTTTAGGAAAATGCAAAAACGAC 59.823 40.000 0.00 0.00 38.24 4.34
626 627 5.293560 CCCTTTAGGAAAATGCAAAAACGA 58.706 37.500 0.00 0.00 38.24 3.85
627 628 4.450757 CCCCTTTAGGAAAATGCAAAAACG 59.549 41.667 0.00 0.00 38.24 3.60
628 629 4.215399 GCCCCTTTAGGAAAATGCAAAAAC 59.785 41.667 0.00 0.00 38.24 2.43
629 630 4.393834 GCCCCTTTAGGAAAATGCAAAAA 58.606 39.130 0.00 0.00 38.24 1.94
630 631 3.244735 GGCCCCTTTAGGAAAATGCAAAA 60.245 43.478 0.00 0.00 38.24 2.44
631 632 2.304470 GGCCCCTTTAGGAAAATGCAAA 59.696 45.455 0.00 0.00 38.24 3.68
632 633 1.905894 GGCCCCTTTAGGAAAATGCAA 59.094 47.619 0.00 0.00 38.24 4.08
633 634 1.567357 GGCCCCTTTAGGAAAATGCA 58.433 50.000 0.00 0.00 38.24 3.96
634 635 0.830648 GGGCCCCTTTAGGAAAATGC 59.169 55.000 12.23 0.00 38.24 3.56
635 636 1.111277 CGGGCCCCTTTAGGAAAATG 58.889 55.000 18.66 0.00 38.24 2.32
636 637 0.032515 CCGGGCCCCTTTAGGAAAAT 60.033 55.000 18.66 0.00 38.24 1.82
637 638 1.384975 CCGGGCCCCTTTAGGAAAA 59.615 57.895 18.66 0.00 38.24 2.29
638 639 1.853565 ACCGGGCCCCTTTAGGAAA 60.854 57.895 18.66 0.00 38.24 3.13
639 640 2.204182 ACCGGGCCCCTTTAGGAA 60.204 61.111 18.66 0.00 38.24 3.36
640 641 3.012722 CACCGGGCCCCTTTAGGA 61.013 66.667 18.66 0.00 38.24 2.94
641 642 4.123545 CCACCGGGCCCCTTTAGG 62.124 72.222 18.66 14.26 0.00 2.69
642 643 4.123545 CCCACCGGGCCCCTTTAG 62.124 72.222 18.66 0.24 35.35 1.85
652 653 1.879430 CACGCGTAATACCCACCGG 60.879 63.158 13.44 0.00 0.00 5.28
653 654 2.519175 GCACGCGTAATACCCACCG 61.519 63.158 13.44 0.00 0.00 4.94
654 655 2.519175 CGCACGCGTAATACCCACC 61.519 63.158 13.44 0.00 34.35 4.61
655 656 2.519175 CCGCACGCGTAATACCCAC 61.519 63.158 13.44 0.00 37.81 4.61
656 657 2.202770 CCGCACGCGTAATACCCA 60.203 61.111 13.44 0.00 37.81 4.51
657 658 3.633089 GCCGCACGCGTAATACCC 61.633 66.667 13.44 0.00 37.81 3.69
658 659 3.633089 GGCCGCACGCGTAATACC 61.633 66.667 13.44 8.24 38.94 2.73
659 660 3.979961 CGGCCGCACGCGTAATAC 61.980 66.667 14.67 1.60 38.94 1.89
678 679 1.003476 CTGGTTTTTGGGCCCATGC 60.003 57.895 29.23 15.70 0.00 4.06
679 680 1.678724 CCTGGTTTTTGGGCCCATG 59.321 57.895 29.23 9.73 0.00 3.66
680 681 2.223443 GCCTGGTTTTTGGGCCCAT 61.223 57.895 29.23 0.00 39.96 4.00
681 682 2.846754 GCCTGGTTTTTGGGCCCA 60.847 61.111 24.45 24.45 39.96 5.36
684 685 0.617535 ATAGGGCCTGGTTTTTGGGC 60.618 55.000 18.53 0.00 46.59 5.36
685 686 1.194218 CATAGGGCCTGGTTTTTGGG 58.806 55.000 18.53 0.00 0.00 4.12
686 687 1.194218 CCATAGGGCCTGGTTTTTGG 58.806 55.000 18.53 9.44 0.00 3.28
728 729 1.067250 GCCAAGCCAGACGCAAAAA 59.933 52.632 0.00 0.00 41.38 1.94
729 730 0.536233 TAGCCAAGCCAGACGCAAAA 60.536 50.000 0.00 0.00 41.38 2.44
730 731 0.955428 CTAGCCAAGCCAGACGCAAA 60.955 55.000 0.00 0.00 41.38 3.68
731 732 1.375908 CTAGCCAAGCCAGACGCAA 60.376 57.895 0.00 0.00 41.38 4.85
732 733 2.265739 CTAGCCAAGCCAGACGCA 59.734 61.111 0.00 0.00 41.38 5.24
733 734 2.512515 CCTAGCCAAGCCAGACGC 60.513 66.667 0.00 0.00 37.98 5.19
734 735 2.512515 GCCTAGCCAAGCCAGACG 60.513 66.667 0.00 0.00 0.00 4.18
746 747 2.674672 ATACCTCGGGGTGGGCCTAG 62.675 65.000 20.02 0.00 46.75 3.02
747 748 1.370651 TATACCTCGGGGTGGGCCTA 61.371 60.000 20.02 0.00 46.75 3.93
748 749 2.674672 CTATACCTCGGGGTGGGCCT 62.675 65.000 20.02 0.00 46.75 5.19
749 750 2.122725 TATACCTCGGGGTGGGCC 60.123 66.667 20.02 0.00 46.75 5.80
750 751 2.880380 GCTATACCTCGGGGTGGGC 61.880 68.421 20.02 14.70 46.75 5.36
751 752 2.214920 GGCTATACCTCGGGGTGGG 61.215 68.421 20.02 8.06 46.75 4.61
752 753 1.458777 TGGCTATACCTCGGGGTGG 60.459 63.158 20.02 8.46 46.75 4.61
753 754 1.472662 CCTGGCTATACCTCGGGGTG 61.473 65.000 20.02 0.29 46.75 4.61
755 756 1.913762 CCCTGGCTATACCTCGGGG 60.914 68.421 0.00 0.00 42.81 5.73
756 757 3.793060 CCCTGGCTATACCTCGGG 58.207 66.667 0.00 0.00 41.53 5.14
757 758 2.233305 ATACCCTGGCTATACCTCGG 57.767 55.000 0.00 0.00 40.22 4.63
758 759 3.700038 CCTTATACCCTGGCTATACCTCG 59.300 52.174 0.00 0.00 40.22 4.63
759 760 4.031611 CCCTTATACCCTGGCTATACCTC 58.968 52.174 0.00 0.00 40.22 3.85
760 761 3.671130 TCCCTTATACCCTGGCTATACCT 59.329 47.826 0.00 0.00 40.22 3.08
761 762 4.031611 CTCCCTTATACCCTGGCTATACC 58.968 52.174 0.00 0.00 39.84 2.73
762 763 3.451540 GCTCCCTTATACCCTGGCTATAC 59.548 52.174 0.00 0.00 0.00 1.47
763 764 3.568109 GGCTCCCTTATACCCTGGCTATA 60.568 52.174 0.00 0.00 0.00 1.31
764 765 2.552367 GCTCCCTTATACCCTGGCTAT 58.448 52.381 0.00 0.00 0.00 2.97
765 766 1.484446 GGCTCCCTTATACCCTGGCTA 60.484 57.143 0.00 0.00 0.00 3.93
766 767 0.768609 GGCTCCCTTATACCCTGGCT 60.769 60.000 0.00 0.00 0.00 4.75
767 768 1.761822 GGCTCCCTTATACCCTGGC 59.238 63.158 0.00 0.00 0.00 4.85
768 769 0.401395 TGGGCTCCCTTATACCCTGG 60.401 60.000 6.50 0.00 43.25 4.45
769 770 1.747444 ATGGGCTCCCTTATACCCTG 58.253 55.000 6.50 0.00 43.25 4.45
770 771 2.089350 AGAATGGGCTCCCTTATACCCT 60.089 50.000 6.50 0.00 43.25 4.34
771 772 2.349445 AGAATGGGCTCCCTTATACCC 58.651 52.381 6.50 0.00 43.14 3.69
772 773 3.519913 CCTAGAATGGGCTCCCTTATACC 59.480 52.174 6.50 0.00 36.94 2.73
773 774 4.828072 CCTAGAATGGGCTCCCTTATAC 57.172 50.000 6.50 0.00 36.94 1.47
797 798 2.202623 CGAAAGACGAGAGCCCGG 60.203 66.667 0.00 0.00 45.77 5.73
798 799 2.202623 CCGAAAGACGAGAGCCCG 60.203 66.667 0.00 0.00 45.77 6.13
874 875 1.225855 AGAACAAAACGATGCTCGCA 58.774 45.000 5.63 0.00 45.12 5.10
876 877 4.527564 AGAAAAGAACAAAACGATGCTCG 58.472 39.130 0.00 4.36 46.93 5.03
881 882 5.505159 GGGACGAAGAAAAGAACAAAACGAT 60.505 40.000 0.00 0.00 0.00 3.73
931 933 1.659035 GGGGGATTTCCATGGCCTCT 61.659 60.000 6.96 0.00 37.91 3.69
932 934 1.152461 GGGGGATTTCCATGGCCTC 60.152 63.158 6.96 1.49 37.91 4.70
956 958 3.660111 GAGTTGGTGGTGGTGCGC 61.660 66.667 0.00 0.00 0.00 6.09
1296 1302 1.470458 GGGAAGTACCGGATGACGTTC 60.470 57.143 9.46 8.58 42.24 3.95
1308 1314 0.838987 TGACCTGGGTGGGGAAGTAC 60.839 60.000 0.00 0.00 41.11 2.73
1422 1435 2.677524 AATGCAGGCATGGCACGT 60.678 55.556 22.64 11.45 45.23 4.49
1558 1573 6.468000 GGTGCAGCGAATTACTAAACAAATAC 59.532 38.462 0.00 0.00 0.00 1.89
1566 1581 2.289756 TGTGGGTGCAGCGAATTACTAA 60.290 45.455 10.24 0.00 0.00 2.24
1567 1582 1.276705 TGTGGGTGCAGCGAATTACTA 59.723 47.619 10.24 0.00 0.00 1.82
1568 1583 0.036164 TGTGGGTGCAGCGAATTACT 59.964 50.000 10.24 0.00 0.00 2.24
1596 1611 1.109323 AGCAAGTTTGAGGGCCACAC 61.109 55.000 6.18 0.00 0.00 3.82
1661 1676 6.038603 CAGATTCTGTGGTGAGAAAAAGTTGA 59.961 38.462 5.46 0.00 35.60 3.18
1686 1703 5.446073 GCCTTATGAAAGCGAAAGACACTAC 60.446 44.000 0.00 0.00 0.00 2.73
1720 1737 4.644685 GCTTTCCCTGTGCCAGATATAAAA 59.355 41.667 4.00 0.00 32.44 1.52
1765 1782 1.160137 GTGCTCTTCACACATGACCC 58.840 55.000 0.00 0.00 44.98 4.46
1844 2241 1.774254 TCATATTGCGAGGGGTGGAAT 59.226 47.619 0.00 0.00 0.00 3.01
1900 2317 4.498009 GCATAACCATTATGACACCAGTGC 60.498 45.833 11.81 0.00 44.52 4.40
1998 2484 5.745227 ACACCTGTTATCTTCCATTACCAG 58.255 41.667 0.00 0.00 0.00 4.00
2003 2489 7.275920 GTGATAGACACCTGTTATCTTCCATT 58.724 38.462 0.00 0.00 43.05 3.16
2033 3432 6.312399 TGTAACAGTGGAAGCATAAGTTTG 57.688 37.500 0.00 0.00 0.00 2.93
2142 3555 2.218603 GTGCCGAGGGTATAAACATGG 58.781 52.381 0.00 0.00 0.00 3.66
2200 3613 7.917505 GCACACTAGCTATTTTTCTAATGCAAT 59.082 33.333 0.00 0.00 0.00 3.56
2202 3615 6.456853 CGCACACTAGCTATTTTTCTAATGCA 60.457 38.462 0.00 0.00 0.00 3.96
2204 3617 6.257849 TCCGCACACTAGCTATTTTTCTAATG 59.742 38.462 0.00 0.00 0.00 1.90
2249 3662 2.675348 GTGACAGCAGGAGCATAAGTTC 59.325 50.000 0.00 0.00 45.49 3.01
2702 4123 1.003003 TCCACGAATGCCATCAGTTGA 59.997 47.619 0.00 0.00 0.00 3.18
2713 4134 2.201732 CCTCGGTACAATCCACGAATG 58.798 52.381 0.00 0.00 34.70 2.67
2825 4259 1.137086 CAGGAATGACGGTACCTCCAG 59.863 57.143 17.08 7.37 35.57 3.86
2834 4268 2.609459 GCAGATTACACAGGAATGACGG 59.391 50.000 0.00 0.00 0.00 4.79
2875 4316 7.823745 AATAATTGTGTCAAACTGGTCTTCT 57.176 32.000 0.00 0.00 0.00 2.85
2894 4340 6.327104 TCCCTGCAAAAGCATCCAATAATAAT 59.673 34.615 0.00 0.00 0.00 1.28
3369 4828 3.380637 GCTGTGCTGATCAATTCATTCCT 59.619 43.478 0.00 0.00 32.72 3.36
3674 8001 2.694628 AGAAAATGCAGCAAAGGTGTGA 59.305 40.909 0.00 0.00 33.19 3.58
3701 8028 6.476378 ACAATGGCTTATGTCAGTCTTAGTT 58.524 36.000 0.00 0.00 0.00 2.24
3702 8029 6.054860 ACAATGGCTTATGTCAGTCTTAGT 57.945 37.500 0.00 0.00 0.00 2.24
3795 8122 3.508840 CGATCAACAAGGCCGGGC 61.509 66.667 22.67 22.67 0.00 6.13
3796 8123 3.508840 GCGATCAACAAGGCCGGG 61.509 66.667 2.18 0.00 0.00 5.73
4137 8495 4.782019 TTGCAATTCACACCAGATAACC 57.218 40.909 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.