Multiple sequence alignment - TraesCS3B01G031900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G031900 chr3B 100.000 4150 0 0 1 4150 14462207 14466356 0.000000e+00 7664.0
1 TraesCS3B01G031900 chr3B 92.987 1925 99 18 2232 4150 14997705 14995811 0.000000e+00 2774.0
2 TraesCS3B01G031900 chr3B 85.638 1121 127 22 769 1860 14704098 14702983 0.000000e+00 1147.0
3 TraesCS3B01G031900 chr3B 92.109 773 60 1 2159 2930 14694374 14693602 0.000000e+00 1088.0
4 TraesCS3B01G031900 chr3B 88.457 875 81 10 1946 2801 14702832 14701959 0.000000e+00 1038.0
5 TraesCS3B01G031900 chr3B 87.821 739 87 2 807 1542 14695989 14695251 0.000000e+00 863.0
6 TraesCS3B01G031900 chr3B 88.107 412 28 4 388 791 14701873 14701475 1.750000e-128 470.0
7 TraesCS3B01G031900 chr3B 78.211 693 92 15 3478 4150 26657560 26658213 5.030000e-104 388.0
8 TraesCS3B01G031900 chr3B 78.066 693 93 15 3478 4150 14977364 14976711 2.340000e-102 383.0
9 TraesCS3B01G031900 chr3B 87.234 235 12 8 401 634 14997918 14997701 6.890000e-63 252.0
10 TraesCS3B01G031900 chr3B 98.333 60 0 1 303 361 483379385 483379326 2.040000e-18 104.0
11 TraesCS3B01G031900 chr3B 86.667 90 6 1 133 216 14701952 14701863 1.230000e-15 95.3
12 TraesCS3B01G031900 chr3B 91.667 60 4 1 134 193 14997998 14997940 9.560000e-12 82.4
13 TraesCS3B01G031900 chr3A 86.605 2053 225 23 882 2889 16596931 16598978 0.000000e+00 2222.0
14 TraesCS3B01G031900 chr3A 88.200 1322 121 16 1946 3233 17700351 17701671 0.000000e+00 1544.0
15 TraesCS3B01G031900 chr3A 87.395 1071 119 11 803 1860 17699133 17700200 0.000000e+00 1216.0
16 TraesCS3B01G031900 chr3A 81.928 664 92 14 3466 4116 17701930 17702578 1.700000e-148 536.0
17 TraesCS3B01G031900 chr3A 85.232 237 17 7 3015 3233 16598973 16599209 1.160000e-55 228.0
18 TraesCS3B01G031900 chr3D 90.909 1507 102 19 1946 3426 10519083 10517586 0.000000e+00 1991.0
19 TraesCS3B01G031900 chr3D 88.200 1322 120 17 1946 3233 10637686 10636367 0.000000e+00 1544.0
20 TraesCS3B01G031900 chr3D 85.512 1415 166 27 442 1844 10520624 10519237 0.000000e+00 1441.0
21 TraesCS3B01G031900 chr3D 84.026 1371 162 37 528 1860 10639169 10637818 0.000000e+00 1266.0
22 TraesCS3B01G031900 chr3D 94.356 691 36 1 3463 4150 10517579 10516889 0.000000e+00 1057.0
23 TraesCS3B01G031900 chr3D 83.283 664 94 8 3472 4122 10636102 10635443 2.760000e-166 595.0
24 TraesCS3B01G031900 chr3D 98.333 60 0 1 303 361 399722057 399721998 2.040000e-18 104.0
25 TraesCS3B01G031900 chr3D 96.667 60 1 1 303 361 602902637 602902578 9.490000e-17 99.0
26 TraesCS3B01G031900 chr6B 80.636 1007 182 12 2219 3215 40441841 40442844 0.000000e+00 767.0
27 TraesCS3B01G031900 chr6A 78.471 850 169 10 1000 1839 23375048 23374203 1.010000e-150 544.0
28 TraesCS3B01G031900 chr5B 98.901 91 1 0 216 306 680998603 680998693 3.320000e-36 163.0
29 TraesCS3B01G031900 chr5B 94.624 93 5 0 216 308 695989206 695989298 1.200000e-30 145.0
30 TraesCS3B01G031900 chr5B 93.478 92 6 0 215 306 129461535 129461444 2.010000e-28 137.0
31 TraesCS3B01G031900 chr2B 95.604 91 4 0 216 306 745041657 745041747 3.340000e-31 147.0
32 TraesCS3B01G031900 chr5A 95.556 90 4 0 216 305 445253240 445253151 1.200000e-30 145.0
33 TraesCS3B01G031900 chr5A 95.238 84 4 0 222 305 445256403 445256320 2.600000e-27 134.0
34 TraesCS3B01G031900 chr7D 94.565 92 4 1 215 306 634071204 634071114 1.560000e-29 141.0
35 TraesCS3B01G031900 chr7D 98.333 60 0 1 303 361 579022038 579021979 2.040000e-18 104.0
36 TraesCS3B01G031900 chr7D 96.667 60 0 2 303 361 307125334 307125276 9.490000e-17 99.0
37 TraesCS3B01G031900 chr4B 94.444 90 5 0 217 306 180560002 180560091 5.590000e-29 139.0
38 TraesCS3B01G031900 chr4B 96.667 60 1 1 303 361 209287131 209287072 9.490000e-17 99.0
39 TraesCS3B01G031900 chr4B 96.667 60 1 1 303 361 309286012 309286071 9.490000e-17 99.0
40 TraesCS3B01G031900 chr7B 93.478 92 6 0 215 306 484589985 484589894 2.010000e-28 137.0
41 TraesCS3B01G031900 chr2D 98.333 60 0 1 303 361 189924756 189924697 2.040000e-18 104.0
42 TraesCS3B01G031900 chr4D 100.000 55 0 0 307 361 123253223 123253169 7.340000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G031900 chr3B 14462207 14466356 4149 False 7664.000000 7664 100.000000 1 4150 1 chr3B.!!$F1 4149
1 TraesCS3B01G031900 chr3B 14995811 14997998 2187 True 1036.133333 2774 90.629333 134 4150 3 chr3B.!!$R5 4016
2 TraesCS3B01G031900 chr3B 14693602 14695989 2387 True 975.500000 1088 89.965000 807 2930 2 chr3B.!!$R3 2123
3 TraesCS3B01G031900 chr3B 14701475 14704098 2623 True 687.575000 1147 87.217250 133 2801 4 chr3B.!!$R4 2668
4 TraesCS3B01G031900 chr3B 26657560 26658213 653 False 388.000000 388 78.211000 3478 4150 1 chr3B.!!$F2 672
5 TraesCS3B01G031900 chr3B 14976711 14977364 653 True 383.000000 383 78.066000 3478 4150 1 chr3B.!!$R1 672
6 TraesCS3B01G031900 chr3A 16596931 16599209 2278 False 1225.000000 2222 85.918500 882 3233 2 chr3A.!!$F1 2351
7 TraesCS3B01G031900 chr3A 17699133 17702578 3445 False 1098.666667 1544 85.841000 803 4116 3 chr3A.!!$F2 3313
8 TraesCS3B01G031900 chr3D 10516889 10520624 3735 True 1496.333333 1991 90.259000 442 4150 3 chr3D.!!$R3 3708
9 TraesCS3B01G031900 chr3D 10635443 10639169 3726 True 1135.000000 1544 85.169667 528 4122 3 chr3D.!!$R4 3594
10 TraesCS3B01G031900 chr6B 40441841 40442844 1003 False 767.000000 767 80.636000 2219 3215 1 chr6B.!!$F1 996
11 TraesCS3B01G031900 chr6A 23374203 23375048 845 True 544.000000 544 78.471000 1000 1839 1 chr6A.!!$R1 839

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
277 284 0.034186 TGACATGTGGGCCTGATTCC 60.034 55.0 1.15 0.00 0.00 3.01 F
351 358 0.039527 GTGGGCAAATCGTTGTGTCC 60.040 55.0 0.00 0.00 37.06 4.02 F
706 750 0.248377 GATTTGCATCCGACAGCTGC 60.248 55.0 15.27 5.81 36.45 5.25 F
1170 1250 0.335019 TCCTGGAGAGGATGTCGGAA 59.665 55.0 0.00 0.00 44.13 4.30 F
2613 3101 0.486879 TCTGGGCCCCAATTTTGAGT 59.513 50.0 22.27 0.00 30.80 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1558 1905 0.108585 GCAGAACCACCCTCTTCACA 59.891 55.000 0.00 0.00 0.00 3.58 R
1658 2008 0.179029 ACACTGGTACTGCGGCTTTT 60.179 50.000 0.00 0.00 0.00 2.27 R
2135 2602 0.319383 ACTCAGTCTCTGCAACTGCG 60.319 55.000 11.44 8.49 43.09 5.18 R
2786 3274 0.035458 CGTCCTCTGGATATTGCCCC 59.965 60.000 0.00 0.00 32.73 5.80 R
3429 4005 2.164827 TCGAAATTTCCTCGGACGATCA 59.835 45.455 12.54 0.00 36.93 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.344064 CATTTGCCCGTTGTATGCC 57.656 52.632 0.00 0.00 0.00 4.40
19 20 0.525242 CATTTGCCCGTTGTATGCCG 60.525 55.000 0.00 0.00 0.00 5.69
20 21 0.963355 ATTTGCCCGTTGTATGCCGT 60.963 50.000 0.00 0.00 0.00 5.68
21 22 1.173444 TTTGCCCGTTGTATGCCGTT 61.173 50.000 0.00 0.00 0.00 4.44
22 23 0.321387 TTGCCCGTTGTATGCCGTTA 60.321 50.000 0.00 0.00 0.00 3.18
23 24 0.741574 TGCCCGTTGTATGCCGTTAG 60.742 55.000 0.00 0.00 0.00 2.34
24 25 0.460635 GCCCGTTGTATGCCGTTAGA 60.461 55.000 0.00 0.00 0.00 2.10
25 26 1.283736 CCCGTTGTATGCCGTTAGAC 58.716 55.000 0.00 0.00 0.00 2.59
26 27 1.404449 CCCGTTGTATGCCGTTAGACA 60.404 52.381 0.00 0.00 0.00 3.41
27 28 1.657094 CCGTTGTATGCCGTTAGACAC 59.343 52.381 0.00 0.00 0.00 3.67
28 29 2.330286 CGTTGTATGCCGTTAGACACA 58.670 47.619 0.00 0.00 0.00 3.72
29 30 2.344441 CGTTGTATGCCGTTAGACACAG 59.656 50.000 0.00 0.00 0.00 3.66
30 31 3.581755 GTTGTATGCCGTTAGACACAGA 58.418 45.455 0.00 0.00 0.00 3.41
31 32 3.945981 TGTATGCCGTTAGACACAGAA 57.054 42.857 0.00 0.00 0.00 3.02
32 33 4.260139 TGTATGCCGTTAGACACAGAAA 57.740 40.909 0.00 0.00 0.00 2.52
33 34 4.827692 TGTATGCCGTTAGACACAGAAAT 58.172 39.130 0.00 0.00 0.00 2.17
34 35 5.242434 TGTATGCCGTTAGACACAGAAATT 58.758 37.500 0.00 0.00 0.00 1.82
35 36 4.685169 ATGCCGTTAGACACAGAAATTG 57.315 40.909 0.00 0.00 0.00 2.32
36 37 2.811431 TGCCGTTAGACACAGAAATTGG 59.189 45.455 0.00 0.00 0.00 3.16
37 38 3.071479 GCCGTTAGACACAGAAATTGGA 58.929 45.455 0.00 0.00 0.00 3.53
38 39 3.500680 GCCGTTAGACACAGAAATTGGAA 59.499 43.478 0.00 0.00 0.00 3.53
39 40 4.156008 GCCGTTAGACACAGAAATTGGAAT 59.844 41.667 0.00 0.00 0.00 3.01
40 41 5.335661 GCCGTTAGACACAGAAATTGGAATT 60.336 40.000 0.00 0.00 0.00 2.17
41 42 6.086222 CCGTTAGACACAGAAATTGGAATTG 58.914 40.000 0.00 0.00 0.00 2.32
42 43 6.293955 CCGTTAGACACAGAAATTGGAATTGT 60.294 38.462 0.00 0.00 0.00 2.71
43 44 7.138736 CGTTAGACACAGAAATTGGAATTGTT 58.861 34.615 0.00 0.00 0.00 2.83
44 45 7.113404 CGTTAGACACAGAAATTGGAATTGTTG 59.887 37.037 0.00 0.00 0.00 3.33
45 46 6.713762 AGACACAGAAATTGGAATTGTTGA 57.286 33.333 0.00 0.00 0.00 3.18
46 47 7.111247 AGACACAGAAATTGGAATTGTTGAA 57.889 32.000 0.00 0.00 0.00 2.69
47 48 7.729116 AGACACAGAAATTGGAATTGTTGAAT 58.271 30.769 0.00 0.00 0.00 2.57
48 49 8.206189 AGACACAGAAATTGGAATTGTTGAATT 58.794 29.630 0.00 0.00 34.29 2.17
49 50 8.369218 ACACAGAAATTGGAATTGTTGAATTC 57.631 30.769 0.00 0.00 44.74 2.17
50 51 8.206189 ACACAGAAATTGGAATTGTTGAATTCT 58.794 29.630 7.05 0.00 44.81 2.40
51 52 8.706035 CACAGAAATTGGAATTGTTGAATTCTC 58.294 33.333 7.05 0.90 44.81 2.87
52 53 7.596248 ACAGAAATTGGAATTGTTGAATTCTCG 59.404 33.333 7.05 0.00 44.81 4.04
53 54 6.587608 AGAAATTGGAATTGTTGAATTCTCGC 59.412 34.615 7.05 0.00 44.81 5.03
54 55 4.844998 TTGGAATTGTTGAATTCTCGCA 57.155 36.364 7.05 0.34 44.81 5.10
55 56 5.389859 TTGGAATTGTTGAATTCTCGCAT 57.610 34.783 7.05 0.00 44.81 4.73
56 57 5.389859 TGGAATTGTTGAATTCTCGCATT 57.610 34.783 7.05 0.62 44.81 3.56
57 58 5.162794 TGGAATTGTTGAATTCTCGCATTG 58.837 37.500 7.05 0.00 44.81 2.82
58 59 5.163513 GGAATTGTTGAATTCTCGCATTGT 58.836 37.500 7.05 0.00 44.81 2.71
59 60 5.287035 GGAATTGTTGAATTCTCGCATTGTC 59.713 40.000 7.05 2.01 44.81 3.18
60 61 5.633830 ATTGTTGAATTCTCGCATTGTCT 57.366 34.783 7.05 0.00 0.00 3.41
61 62 4.668576 TGTTGAATTCTCGCATTGTCTC 57.331 40.909 7.05 0.00 0.00 3.36
62 63 4.064388 TGTTGAATTCTCGCATTGTCTCA 58.936 39.130 7.05 0.00 0.00 3.27
63 64 4.152938 TGTTGAATTCTCGCATTGTCTCAG 59.847 41.667 7.05 0.00 0.00 3.35
64 65 3.264947 TGAATTCTCGCATTGTCTCAGG 58.735 45.455 7.05 0.00 0.00 3.86
65 66 2.322355 ATTCTCGCATTGTCTCAGGG 57.678 50.000 0.00 0.00 0.00 4.45
66 67 1.266178 TTCTCGCATTGTCTCAGGGA 58.734 50.000 0.00 0.00 0.00 4.20
67 68 1.266178 TCTCGCATTGTCTCAGGGAA 58.734 50.000 0.00 0.00 0.00 3.97
68 69 1.066858 TCTCGCATTGTCTCAGGGAAC 60.067 52.381 0.00 0.00 0.00 3.62
69 70 0.684535 TCGCATTGTCTCAGGGAACA 59.315 50.000 0.00 0.00 0.00 3.18
70 71 1.071542 TCGCATTGTCTCAGGGAACAA 59.928 47.619 0.00 0.00 0.00 2.83
71 72 1.879380 CGCATTGTCTCAGGGAACAAA 59.121 47.619 0.00 0.00 0.00 2.83
72 73 2.489329 CGCATTGTCTCAGGGAACAAAT 59.511 45.455 0.00 0.00 0.00 2.32
73 74 3.426695 CGCATTGTCTCAGGGAACAAATC 60.427 47.826 0.00 0.00 0.00 2.17
74 75 3.507233 GCATTGTCTCAGGGAACAAATCA 59.493 43.478 0.00 0.00 0.00 2.57
75 76 4.159135 GCATTGTCTCAGGGAACAAATCAT 59.841 41.667 0.00 0.00 0.00 2.45
76 77 5.647589 CATTGTCTCAGGGAACAAATCATG 58.352 41.667 0.00 0.00 0.00 3.07
77 78 4.371624 TGTCTCAGGGAACAAATCATGT 57.628 40.909 0.00 0.00 46.82 3.21
78 79 4.074259 TGTCTCAGGGAACAAATCATGTG 58.926 43.478 0.00 0.00 42.99 3.21
79 80 3.441572 GTCTCAGGGAACAAATCATGTGG 59.558 47.826 0.00 0.00 42.99 4.17
80 81 2.165030 CTCAGGGAACAAATCATGTGGC 59.835 50.000 0.00 0.00 42.99 5.01
81 82 2.173519 CAGGGAACAAATCATGTGGCT 58.826 47.619 0.00 0.00 42.99 4.75
82 83 2.094390 CAGGGAACAAATCATGTGGCTG 60.094 50.000 0.00 0.00 42.99 4.85
83 84 2.170166 GGGAACAAATCATGTGGCTGA 58.830 47.619 0.00 0.00 42.99 4.26
84 85 2.094545 GGGAACAAATCATGTGGCTGAC 60.095 50.000 0.00 0.00 42.99 3.51
85 86 2.557924 GGAACAAATCATGTGGCTGACA 59.442 45.455 0.00 0.00 42.99 3.58
86 87 3.005684 GGAACAAATCATGTGGCTGACAA 59.994 43.478 0.00 0.00 42.99 3.18
87 88 4.501229 GGAACAAATCATGTGGCTGACAAA 60.501 41.667 0.00 0.00 42.99 2.83
88 89 3.981211 ACAAATCATGTGGCTGACAAAC 58.019 40.909 0.00 0.00 41.93 2.93
89 90 3.638160 ACAAATCATGTGGCTGACAAACT 59.362 39.130 0.00 0.00 41.93 2.66
90 91 4.099881 ACAAATCATGTGGCTGACAAACTT 59.900 37.500 0.00 0.00 41.93 2.66
91 92 3.928727 ATCATGTGGCTGACAAACTTG 57.071 42.857 0.00 0.00 38.36 3.16
92 93 2.653726 TCATGTGGCTGACAAACTTGT 58.346 42.857 0.00 0.00 45.65 3.16
93 94 3.023119 TCATGTGGCTGACAAACTTGTT 58.977 40.909 0.00 0.00 42.43 2.83
94 95 2.937469 TGTGGCTGACAAACTTGTTG 57.063 45.000 0.00 0.00 42.43 3.33
95 96 1.135141 TGTGGCTGACAAACTTGTTGC 60.135 47.619 10.90 10.90 42.43 4.17
96 97 1.135141 GTGGCTGACAAACTTGTTGCA 60.135 47.619 17.24 0.00 42.43 4.08
97 98 1.547820 TGGCTGACAAACTTGTTGCAA 59.452 42.857 17.24 0.00 42.43 4.08
98 99 2.195922 GGCTGACAAACTTGTTGCAAG 58.804 47.619 0.00 7.27 42.43 4.01
99 100 2.159254 GGCTGACAAACTTGTTGCAAGA 60.159 45.455 14.81 0.00 42.43 3.02
100 101 3.111098 GCTGACAAACTTGTTGCAAGAG 58.889 45.455 14.81 3.55 42.43 2.85
101 102 3.428045 GCTGACAAACTTGTTGCAAGAGT 60.428 43.478 14.81 4.29 42.43 3.24
102 103 4.737054 CTGACAAACTTGTTGCAAGAGTT 58.263 39.130 17.90 17.90 42.43 3.01
103 104 5.132897 TGACAAACTTGTTGCAAGAGTTT 57.867 34.783 24.55 24.55 42.43 2.66
104 105 5.537188 TGACAAACTTGTTGCAAGAGTTTT 58.463 33.333 26.37 20.24 42.43 2.43
105 106 6.682746 TGACAAACTTGTTGCAAGAGTTTTA 58.317 32.000 26.37 17.65 42.43 1.52
106 107 6.584563 TGACAAACTTGTTGCAAGAGTTTTAC 59.415 34.615 26.37 22.87 42.43 2.01
107 108 5.867174 ACAAACTTGTTGCAAGAGTTTTACC 59.133 36.000 26.37 4.92 40.54 2.85
108 109 4.287238 ACTTGTTGCAAGAGTTTTACCG 57.713 40.909 14.81 0.00 0.00 4.02
109 110 3.942748 ACTTGTTGCAAGAGTTTTACCGA 59.057 39.130 14.81 0.00 0.00 4.69
110 111 4.035208 ACTTGTTGCAAGAGTTTTACCGAG 59.965 41.667 14.81 0.00 0.00 4.63
111 112 3.799366 TGTTGCAAGAGTTTTACCGAGA 58.201 40.909 0.00 0.00 0.00 4.04
112 113 4.193090 TGTTGCAAGAGTTTTACCGAGAA 58.807 39.130 0.00 0.00 0.00 2.87
113 114 4.636648 TGTTGCAAGAGTTTTACCGAGAAA 59.363 37.500 0.00 0.00 0.00 2.52
114 115 5.124138 TGTTGCAAGAGTTTTACCGAGAAAA 59.876 36.000 0.00 0.00 0.00 2.29
115 116 6.183360 TGTTGCAAGAGTTTTACCGAGAAAAT 60.183 34.615 0.00 0.00 31.29 1.82
116 117 5.997385 TGCAAGAGTTTTACCGAGAAAATC 58.003 37.500 0.00 0.00 32.85 2.17
117 118 5.529430 TGCAAGAGTTTTACCGAGAAAATCA 59.471 36.000 0.00 0.00 34.53 2.57
118 119 6.038825 TGCAAGAGTTTTACCGAGAAAATCAA 59.961 34.615 0.00 0.00 34.53 2.57
119 120 7.084486 GCAAGAGTTTTACCGAGAAAATCAAT 58.916 34.615 7.79 0.00 34.53 2.57
120 121 7.595130 GCAAGAGTTTTACCGAGAAAATCAATT 59.405 33.333 7.79 0.00 34.53 2.32
121 122 8.905702 CAAGAGTTTTACCGAGAAAATCAATTG 58.094 33.333 0.00 0.00 34.53 2.32
122 123 8.391075 AGAGTTTTACCGAGAAAATCAATTGA 57.609 30.769 11.26 11.26 34.53 2.57
123 124 8.846211 AGAGTTTTACCGAGAAAATCAATTGAA 58.154 29.630 13.09 0.00 34.53 2.69
124 125 9.458374 GAGTTTTACCGAGAAAATCAATTGAAA 57.542 29.630 13.09 0.00 32.91 2.69
125 126 9.981114 AGTTTTACCGAGAAAATCAATTGAAAT 57.019 25.926 13.09 1.49 31.29 2.17
130 131 7.035612 ACCGAGAAAATCAATTGAAATTAGGC 58.964 34.615 13.09 4.88 0.00 3.93
131 132 6.197096 CCGAGAAAATCAATTGAAATTAGGCG 59.803 38.462 13.09 10.76 0.00 5.52
132 133 6.197096 CGAGAAAATCAATTGAAATTAGGCGG 59.803 38.462 13.09 0.00 0.00 6.13
133 134 7.169158 AGAAAATCAATTGAAATTAGGCGGA 57.831 32.000 13.09 0.00 0.00 5.54
134 135 7.785033 AGAAAATCAATTGAAATTAGGCGGAT 58.215 30.769 13.09 0.00 0.00 4.18
135 136 7.707893 AGAAAATCAATTGAAATTAGGCGGATG 59.292 33.333 13.09 0.00 0.00 3.51
136 137 6.713762 AATCAATTGAAATTAGGCGGATGA 57.286 33.333 13.09 0.00 0.00 2.92
137 138 6.906157 ATCAATTGAAATTAGGCGGATGAT 57.094 33.333 13.09 0.00 0.00 2.45
138 139 6.075762 TCAATTGAAATTAGGCGGATGATG 57.924 37.500 5.45 0.00 0.00 3.07
139 140 5.827267 TCAATTGAAATTAGGCGGATGATGA 59.173 36.000 5.45 0.00 0.00 2.92
187 188 1.026182 TGAAGGATGTGCGGCATGAC 61.026 55.000 5.72 0.00 38.06 3.06
207 214 4.819088 TGACGACTTGAAAACAATCATGGA 59.181 37.500 0.00 0.00 0.00 3.41
208 215 5.298026 TGACGACTTGAAAACAATCATGGAA 59.702 36.000 0.00 0.00 0.00 3.53
212 219 6.041423 ACTTGAAAACAATCATGGAATCCC 57.959 37.500 0.00 0.00 0.00 3.85
222 229 3.909587 TGGAATCCCATGGAAGCAG 57.090 52.632 15.22 0.00 37.58 4.24
223 230 0.396139 TGGAATCCCATGGAAGCAGC 60.396 55.000 15.22 0.00 37.58 5.25
224 231 0.106318 GGAATCCCATGGAAGCAGCT 60.106 55.000 15.22 0.00 34.34 4.24
225 232 1.316651 GAATCCCATGGAAGCAGCTC 58.683 55.000 15.22 0.00 34.34 4.09
226 233 0.106318 AATCCCATGGAAGCAGCTCC 60.106 55.000 15.22 0.00 34.34 4.70
227 234 2.004408 ATCCCATGGAAGCAGCTCCC 62.004 60.000 15.22 0.00 34.34 4.30
228 235 2.123982 CCATGGAAGCAGCTCCCC 60.124 66.667 5.56 0.62 34.22 4.81
229 236 2.687610 CCATGGAAGCAGCTCCCCT 61.688 63.158 5.56 0.00 34.22 4.79
230 237 1.453379 CATGGAAGCAGCTCCCCTG 60.453 63.158 13.30 2.18 44.67 4.45
231 238 1.617536 ATGGAAGCAGCTCCCCTGA 60.618 57.895 13.30 0.00 44.64 3.86
232 239 1.919600 ATGGAAGCAGCTCCCCTGAC 61.920 60.000 13.30 0.00 44.64 3.51
233 240 2.125350 GAAGCAGCTCCCCTGACG 60.125 66.667 0.00 0.00 44.64 4.35
234 241 2.925170 AAGCAGCTCCCCTGACGT 60.925 61.111 0.00 0.00 44.64 4.34
235 242 1.605058 GAAGCAGCTCCCCTGACGTA 61.605 60.000 0.00 0.00 44.64 3.57
236 243 1.889530 AAGCAGCTCCCCTGACGTAC 61.890 60.000 0.00 0.00 44.64 3.67
237 244 2.352032 GCAGCTCCCCTGACGTACT 61.352 63.158 0.00 0.00 44.64 2.73
238 245 1.513158 CAGCTCCCCTGACGTACTG 59.487 63.158 0.00 0.00 44.64 2.74
239 246 2.184579 GCTCCCCTGACGTACTGC 59.815 66.667 0.00 0.00 0.00 4.40
240 247 2.646175 GCTCCCCTGACGTACTGCA 61.646 63.158 0.00 0.00 0.00 4.41
241 248 1.215647 CTCCCCTGACGTACTGCAC 59.784 63.158 0.00 0.00 0.00 4.57
242 249 1.532078 TCCCCTGACGTACTGCACA 60.532 57.895 0.00 0.00 0.00 4.57
243 250 0.902984 TCCCCTGACGTACTGCACAT 60.903 55.000 0.00 0.00 0.00 3.21
244 251 0.740868 CCCCTGACGTACTGCACATG 60.741 60.000 0.00 0.00 0.00 3.21
245 252 1.361668 CCCTGACGTACTGCACATGC 61.362 60.000 0.00 0.00 42.50 4.06
246 253 1.361668 CCTGACGTACTGCACATGCC 61.362 60.000 0.49 0.00 41.18 4.40
247 254 1.686566 CTGACGTACTGCACATGCCG 61.687 60.000 0.49 0.00 41.18 5.69
248 255 1.736645 GACGTACTGCACATGCCGT 60.737 57.895 6.19 6.19 41.33 5.68
249 256 1.289109 GACGTACTGCACATGCCGTT 61.289 55.000 6.24 0.00 39.23 4.44
250 257 1.132436 CGTACTGCACATGCCGTTG 59.868 57.895 6.24 0.00 39.23 4.10
251 258 1.501741 GTACTGCACATGCCGTTGG 59.498 57.895 6.24 0.00 39.23 3.77
252 259 1.673993 TACTGCACATGCCGTTGGG 60.674 57.895 6.24 0.00 39.23 4.12
253 260 3.751246 CTGCACATGCCGTTGGGG 61.751 66.667 0.49 0.00 41.18 4.96
262 269 4.263572 CCGTTGGGGGCACTGACA 62.264 66.667 0.00 0.00 0.00 3.58
263 270 2.034066 CGTTGGGGGCACTGACAT 59.966 61.111 0.00 0.00 0.00 3.06
264 271 2.334946 CGTTGGGGGCACTGACATG 61.335 63.158 0.00 0.00 0.00 3.21
265 272 1.228552 GTTGGGGGCACTGACATGT 60.229 57.895 0.00 0.00 0.00 3.21
266 273 1.228521 TTGGGGGCACTGACATGTG 60.229 57.895 1.15 0.00 40.62 3.21
267 274 2.361610 GGGGGCACTGACATGTGG 60.362 66.667 1.15 0.00 38.31 4.17
268 275 2.361610 GGGGCACTGACATGTGGG 60.362 66.667 1.15 0.00 38.31 4.61
269 276 3.064324 GGGCACTGACATGTGGGC 61.064 66.667 1.15 1.55 38.31 5.36
270 277 3.064324 GGCACTGACATGTGGGCC 61.064 66.667 13.22 13.22 38.31 5.80
271 278 2.034687 GCACTGACATGTGGGCCT 59.965 61.111 1.15 0.00 38.31 5.19
272 279 2.338015 GCACTGACATGTGGGCCTG 61.338 63.158 1.15 0.00 38.31 4.85
273 280 1.376086 CACTGACATGTGGGCCTGA 59.624 57.895 1.15 0.00 34.56 3.86
274 281 0.034767 CACTGACATGTGGGCCTGAT 60.035 55.000 1.15 0.00 34.56 2.90
275 282 0.700564 ACTGACATGTGGGCCTGATT 59.299 50.000 1.15 0.00 0.00 2.57
276 283 1.340405 ACTGACATGTGGGCCTGATTC 60.340 52.381 1.15 0.00 0.00 2.52
277 284 0.034186 TGACATGTGGGCCTGATTCC 60.034 55.000 1.15 0.00 0.00 3.01
278 285 0.753111 GACATGTGGGCCTGATTCCC 60.753 60.000 1.15 0.00 44.17 3.97
279 286 1.825191 CATGTGGGCCTGATTCCCG 60.825 63.158 4.53 0.00 46.92 5.14
280 287 2.000701 ATGTGGGCCTGATTCCCGA 61.001 57.895 4.53 0.00 46.92 5.14
281 288 2.124695 GTGGGCCTGATTCCCGAC 60.125 66.667 4.53 0.00 46.92 4.79
282 289 3.781307 TGGGCCTGATTCCCGACG 61.781 66.667 4.53 0.00 46.92 5.12
283 290 4.547367 GGGCCTGATTCCCGACGG 62.547 72.222 6.99 6.99 33.43 4.79
284 291 4.547367 GGCCTGATTCCCGACGGG 62.547 72.222 27.86 27.86 46.11 5.28
286 293 4.547367 CCTGATTCCCGACGGGCC 62.547 72.222 28.89 18.76 43.94 5.80
287 294 4.547367 CTGATTCCCGACGGGCCC 62.547 72.222 28.89 13.57 43.94 5.80
289 296 4.851179 GATTCCCGACGGGCCCAC 62.851 72.222 28.89 14.45 43.94 4.61
298 305 4.704833 CGGGCCCACCTGTCAGTG 62.705 72.222 24.92 0.00 37.57 3.66
304 311 4.577152 CACCTGTCAGTGGCCAAA 57.423 55.556 7.24 0.00 33.95 3.28
305 312 2.032981 CACCTGTCAGTGGCCAAAC 58.967 57.895 7.24 7.17 33.95 2.93
306 313 0.751277 CACCTGTCAGTGGCCAAACA 60.751 55.000 7.24 11.98 33.95 2.83
307 314 0.466189 ACCTGTCAGTGGCCAAACAG 60.466 55.000 26.26 26.26 39.04 3.16
308 315 1.656441 CTGTCAGTGGCCAAACAGC 59.344 57.895 23.59 6.71 33.42 4.40
309 316 2.121564 CTGTCAGTGGCCAAACAGCG 62.122 60.000 23.59 9.18 33.42 5.18
310 317 3.286751 TCAGTGGCCAAACAGCGC 61.287 61.111 7.24 0.00 0.00 5.92
311 318 3.594775 CAGTGGCCAAACAGCGCA 61.595 61.111 7.24 0.00 0.00 6.09
312 319 3.289834 AGTGGCCAAACAGCGCAG 61.290 61.111 7.24 3.33 0.00 5.18
331 338 5.754778 CGCAGCTAATGAATCAATGAATCA 58.245 37.500 3.23 3.23 0.00 2.57
332 339 5.851703 CGCAGCTAATGAATCAATGAATCAG 59.148 40.000 7.13 0.00 0.00 2.90
333 340 6.512903 CGCAGCTAATGAATCAATGAATCAGT 60.513 38.462 7.13 6.81 0.00 3.41
334 341 6.637254 GCAGCTAATGAATCAATGAATCAGTG 59.363 38.462 11.02 4.08 0.00 3.66
335 342 7.139392 CAGCTAATGAATCAATGAATCAGTGG 58.861 38.462 11.02 9.25 29.97 4.00
336 343 6.264744 AGCTAATGAATCAATGAATCAGTGGG 59.735 38.462 11.02 5.63 29.97 4.61
337 344 4.931661 ATGAATCAATGAATCAGTGGGC 57.068 40.909 10.91 1.75 29.97 5.36
338 345 3.699413 TGAATCAATGAATCAGTGGGCA 58.301 40.909 10.91 4.23 29.97 5.36
339 346 4.087907 TGAATCAATGAATCAGTGGGCAA 58.912 39.130 10.91 0.00 29.97 4.52
340 347 4.527427 TGAATCAATGAATCAGTGGGCAAA 59.473 37.500 10.91 0.00 29.97 3.68
341 348 5.188163 TGAATCAATGAATCAGTGGGCAAAT 59.812 36.000 10.91 0.00 29.97 2.32
342 349 4.724074 TCAATGAATCAGTGGGCAAATC 57.276 40.909 10.91 0.00 29.97 2.17
343 350 3.129113 TCAATGAATCAGTGGGCAAATCG 59.871 43.478 10.91 0.00 29.97 3.34
344 351 2.198827 TGAATCAGTGGGCAAATCGT 57.801 45.000 0.00 0.00 0.00 3.73
345 352 2.513753 TGAATCAGTGGGCAAATCGTT 58.486 42.857 0.00 0.00 0.00 3.85
346 353 2.228582 TGAATCAGTGGGCAAATCGTTG 59.771 45.455 0.00 0.00 37.83 4.10
347 354 1.909700 ATCAGTGGGCAAATCGTTGT 58.090 45.000 0.00 0.00 37.06 3.32
348 355 0.950836 TCAGTGGGCAAATCGTTGTG 59.049 50.000 0.00 0.00 37.06 3.33
349 356 0.667993 CAGTGGGCAAATCGTTGTGT 59.332 50.000 0.00 0.00 37.06 3.72
350 357 0.951558 AGTGGGCAAATCGTTGTGTC 59.048 50.000 0.00 0.00 37.06 3.67
351 358 0.039527 GTGGGCAAATCGTTGTGTCC 60.040 55.000 0.00 0.00 37.06 4.02
352 359 0.466372 TGGGCAAATCGTTGTGTCCA 60.466 50.000 5.86 5.86 37.06 4.02
353 360 0.887933 GGGCAAATCGTTGTGTCCAT 59.112 50.000 2.24 0.00 37.06 3.41
354 361 2.088423 GGGCAAATCGTTGTGTCCATA 58.912 47.619 2.24 0.00 37.06 2.74
355 362 2.159435 GGGCAAATCGTTGTGTCCATAC 60.159 50.000 2.24 0.00 37.06 2.39
356 363 2.486203 GGCAAATCGTTGTGTCCATACA 59.514 45.455 0.00 0.00 37.06 2.29
357 364 3.128589 GGCAAATCGTTGTGTCCATACAT 59.871 43.478 0.00 0.00 38.08 2.29
358 365 4.380444 GGCAAATCGTTGTGTCCATACATT 60.380 41.667 0.00 0.00 38.08 2.71
359 366 5.160641 GCAAATCGTTGTGTCCATACATTT 58.839 37.500 0.00 0.00 38.08 2.32
360 367 5.060816 GCAAATCGTTGTGTCCATACATTTG 59.939 40.000 0.00 0.00 38.08 2.32
361 368 5.957842 AATCGTTGTGTCCATACATTTGT 57.042 34.783 0.00 0.00 38.08 2.83
362 369 4.740741 TCGTTGTGTCCATACATTTGTG 57.259 40.909 0.00 0.00 38.08 3.33
363 370 3.058570 TCGTTGTGTCCATACATTTGTGC 60.059 43.478 0.00 0.00 38.08 4.57
364 371 3.574614 GTTGTGTCCATACATTTGTGCC 58.425 45.455 0.00 0.00 38.08 5.01
365 372 1.809547 TGTGTCCATACATTTGTGCCG 59.190 47.619 0.00 0.00 38.08 5.69
366 373 0.808125 TGTCCATACATTTGTGCCGC 59.192 50.000 0.00 0.00 0.00 6.53
367 374 0.808125 GTCCATACATTTGTGCCGCA 59.192 50.000 0.00 0.00 0.00 5.69
368 375 0.808125 TCCATACATTTGTGCCGCAC 59.192 50.000 16.93 16.93 34.56 5.34
369 376 0.523125 CCATACATTTGTGCCGCACG 60.523 55.000 18.41 6.79 37.14 5.34
370 377 0.523125 CATACATTTGTGCCGCACGG 60.523 55.000 18.41 4.30 37.14 4.94
380 387 4.899239 CCGCACGGCAGAGGATCC 62.899 72.222 2.48 2.48 33.66 3.36
381 388 4.147449 CGCACGGCAGAGGATCCA 62.147 66.667 15.82 0.00 33.66 3.41
382 389 2.512515 GCACGGCAGAGGATCCAC 60.513 66.667 15.82 8.01 33.66 4.02
383 390 2.202797 CACGGCAGAGGATCCACG 60.203 66.667 15.82 12.27 33.66 4.94
384 391 2.680352 ACGGCAGAGGATCCACGT 60.680 61.111 15.82 12.91 35.04 4.49
385 392 2.105128 CGGCAGAGGATCCACGTC 59.895 66.667 15.82 2.55 33.66 4.34
386 393 2.501610 GGCAGAGGATCCACGTCC 59.498 66.667 15.82 10.49 38.62 4.79
387 394 2.105128 GCAGAGGATCCACGTCCG 59.895 66.667 15.82 0.00 43.27 4.79
388 395 2.808315 CAGAGGATCCACGTCCGG 59.192 66.667 15.82 0.00 43.27 5.14
389 396 2.442272 AGAGGATCCACGTCCGGG 60.442 66.667 15.82 0.00 43.27 5.73
390 397 2.441532 GAGGATCCACGTCCGGGA 60.442 66.667 15.82 0.00 43.27 5.14
394 401 2.842936 ATCCACGTCCGGGATCCC 60.843 66.667 22.12 22.12 41.26 3.85
395 402 3.689561 ATCCACGTCCGGGATCCCA 62.690 63.158 30.42 9.40 41.26 4.37
396 403 2.965226 ATCCACGTCCGGGATCCCAT 62.965 60.000 30.42 10.81 41.26 4.00
397 404 2.108976 CACGTCCGGGATCCCATG 59.891 66.667 30.42 20.14 35.37 3.66
398 405 2.365105 ACGTCCGGGATCCCATGT 60.365 61.111 30.42 19.60 35.37 3.21
399 406 1.075822 ACGTCCGGGATCCCATGTA 60.076 57.895 30.42 9.37 35.37 2.29
400 407 1.113517 ACGTCCGGGATCCCATGTAG 61.114 60.000 30.42 18.23 35.37 2.74
401 408 1.113517 CGTCCGGGATCCCATGTAGT 61.114 60.000 30.42 0.00 35.37 2.73
402 409 0.680061 GTCCGGGATCCCATGTAGTC 59.320 60.000 30.42 9.14 35.37 2.59
403 410 0.471211 TCCGGGATCCCATGTAGTCC 60.471 60.000 30.42 0.00 35.37 3.85
404 411 0.762842 CCGGGATCCCATGTAGTCCA 60.763 60.000 30.42 0.00 35.37 4.02
434 441 0.824109 TACAGCTCAGAATCGGGTGG 59.176 55.000 0.00 0.00 33.46 4.61
435 442 1.153289 CAGCTCAGAATCGGGTGGG 60.153 63.158 0.00 0.00 0.00 4.61
456 463 2.354503 GCACACAGTCATCAGTCCTCAT 60.355 50.000 0.00 0.00 0.00 2.90
471 478 4.892934 AGTCCTCATTAGTCATCTCCAGAC 59.107 45.833 0.00 0.00 36.26 3.51
472 479 4.038642 GTCCTCATTAGTCATCTCCAGACC 59.961 50.000 0.00 0.00 36.68 3.85
473 480 3.323403 CCTCATTAGTCATCTCCAGACCC 59.677 52.174 0.00 0.00 36.68 4.46
527 543 1.758862 GAAAGGCAATCAATCCCCCAG 59.241 52.381 0.00 0.00 0.00 4.45
562 578 4.828925 GCGTGCCCTGAGCTCCTC 62.829 72.222 12.15 0.00 44.23 3.71
667 683 2.895680 GACGAGCTCCATCTGGCA 59.104 61.111 8.47 0.00 34.44 4.92
706 750 0.248377 GATTTGCATCCGACAGCTGC 60.248 55.000 15.27 5.81 36.45 5.25
717 761 0.528466 GACAGCTGCGATCCGATTGA 60.528 55.000 15.27 0.00 0.00 2.57
722 766 2.032550 AGCTGCGATCCGATTGATTTTG 59.967 45.455 0.00 0.00 32.41 2.44
723 767 2.855953 GCTGCGATCCGATTGATTTTGG 60.856 50.000 0.00 0.00 32.41 3.28
727 771 3.364366 GCGATCCGATTGATTTTGGCTAG 60.364 47.826 0.00 0.00 32.41 3.42
728 772 3.809832 CGATCCGATTGATTTTGGCTAGT 59.190 43.478 0.00 0.00 32.41 2.57
729 773 4.084328 CGATCCGATTGATTTTGGCTAGTC 60.084 45.833 0.00 0.00 32.41 2.59
730 774 3.194861 TCCGATTGATTTTGGCTAGTCG 58.805 45.455 0.00 0.00 0.00 4.18
731 775 2.286418 CCGATTGATTTTGGCTAGTCGC 60.286 50.000 0.00 0.00 38.13 5.19
732 776 2.609459 CGATTGATTTTGGCTAGTCGCT 59.391 45.455 0.00 0.00 39.13 4.93
733 777 3.063997 CGATTGATTTTGGCTAGTCGCTT 59.936 43.478 0.00 0.00 39.13 4.68
734 778 3.829886 TTGATTTTGGCTAGTCGCTTG 57.170 42.857 0.00 0.00 39.13 4.01
735 779 1.468520 TGATTTTGGCTAGTCGCTTGC 59.531 47.619 5.12 5.12 39.13 4.01
736 780 1.468520 GATTTTGGCTAGTCGCTTGCA 59.531 47.619 13.06 0.00 39.13 4.08
737 781 1.533625 TTTTGGCTAGTCGCTTGCAT 58.466 45.000 13.06 0.00 39.13 3.96
738 782 1.086696 TTTGGCTAGTCGCTTGCATC 58.913 50.000 13.06 1.18 39.13 3.91
760 804 3.246226 CGGTTCATGATTCAGGTTCGATC 59.754 47.826 0.00 0.00 0.00 3.69
771 815 1.555533 AGGTTCGATCCCACTTCCTTC 59.444 52.381 8.95 0.00 0.00 3.46
775 827 1.007238 TCGATCCCACTTCCTTCTCCT 59.993 52.381 0.00 0.00 0.00 3.69
799 859 1.065926 TCAAGCACAGCTACCATGAGG 60.066 52.381 0.00 0.00 38.25 3.86
821 881 0.529378 CAAGGGGCTGATTTGAGTGC 59.471 55.000 0.00 0.00 0.00 4.40
826 892 1.203287 GGGCTGATTTGAGTGCTTTCC 59.797 52.381 0.00 0.00 0.00 3.13
847 913 3.337358 CACATGGTAGATGCAGTCAACA 58.663 45.455 0.00 0.00 0.00 3.33
875 942 2.164624 CGTCTAGAGTAAGGCTGCAACT 59.835 50.000 0.50 1.27 0.00 3.16
906 978 1.192146 TCAGTCCTGGGTGTGGCTAC 61.192 60.000 0.00 0.00 0.00 3.58
953 1029 9.930693 TGATTTAAGTTCTTTCCTCTAGAGTTC 57.069 33.333 18.42 1.46 0.00 3.01
987 1067 2.363306 AAATCTGTCCTGGTTGTGCA 57.637 45.000 0.00 0.00 0.00 4.57
1050 1130 2.109181 GCCATAGGTGCCGTCCTC 59.891 66.667 0.00 0.00 38.86 3.71
1053 1133 2.758327 ATAGGTGCCGTCCTCGCA 60.758 61.111 0.00 0.00 38.86 5.10
1071 1151 4.982701 AAGCTTGGCGGCCTGCTT 62.983 61.111 31.62 31.62 45.43 3.91
1085 1165 1.674221 CCTGCTTGCTGGAGAGTACAC 60.674 57.143 12.31 0.00 36.08 2.90
1131 1211 5.582269 CGAGATCATGTTCCTTAAAGCTGAA 59.418 40.000 0.00 0.00 0.00 3.02
1134 1214 6.944862 AGATCATGTTCCTTAAAGCTGAACTT 59.055 34.615 13.23 6.09 41.70 2.66
1170 1250 0.335019 TCCTGGAGAGGATGTCGGAA 59.665 55.000 0.00 0.00 44.13 4.30
1235 1318 0.525668 GTGCGTGATCTGTCCTACGG 60.526 60.000 3.59 0.00 37.06 4.02
1277 1360 2.019984 GTTCATGCTCCTGGTGGAATC 58.980 52.381 0.00 0.00 42.66 2.52
1279 1362 1.487976 TCATGCTCCTGGTGGAATCTC 59.512 52.381 0.00 0.00 42.66 2.75
1295 1378 1.181741 TCTCAGTCCAACTGCGAGCT 61.182 55.000 2.18 0.00 45.54 4.09
1314 1397 2.501316 GCTGCATGGATTTAAGGGGTTT 59.499 45.455 0.00 0.00 0.00 3.27
1318 1401 6.632445 GCTGCATGGATTTAAGGGGTTTATTT 60.632 38.462 0.00 0.00 0.00 1.40
1329 1412 9.582648 TTTAAGGGGTTTATTTATAGGAGCATC 57.417 33.333 0.00 0.00 0.00 3.91
1419 1502 4.104417 GAGGTGAGCGAGCGACGT 62.104 66.667 0.00 0.00 44.60 4.34
1420 1503 4.406173 AGGTGAGCGAGCGACGTG 62.406 66.667 0.00 0.00 44.60 4.49
1452 1535 5.814764 AGATTGATGATGCTGTCTCAAAC 57.185 39.130 0.00 0.00 32.02 2.93
1521 1604 2.044352 GCGGGCCTTGTGGGTATT 60.044 61.111 0.84 0.00 37.43 1.89
1558 1905 3.890756 TGAATTAATTCGGCTGATGGCAT 59.109 39.130 20.45 0.00 39.62 4.40
1633 1983 2.772515 GGAGGGCTTGGTAAGACTACAT 59.227 50.000 0.00 0.00 36.51 2.29
1635 1985 4.192317 GAGGGCTTGGTAAGACTACATTG 58.808 47.826 0.00 0.00 36.51 2.82
1658 2008 2.811431 CGAACCAGATTTACCACAAGCA 59.189 45.455 0.00 0.00 0.00 3.91
1663 2013 3.989817 CCAGATTTACCACAAGCAAAAGC 59.010 43.478 0.00 0.00 0.00 3.51
1664 2014 3.989817 CAGATTTACCACAAGCAAAAGCC 59.010 43.478 0.00 0.00 0.00 4.35
1680 2030 1.079127 GCCGCAGTACCAGTGTCAT 60.079 57.895 0.00 0.00 0.00 3.06
1695 2045 3.880490 AGTGTCATGCTTTTGTTTCCGTA 59.120 39.130 0.00 0.00 0.00 4.02
1775 2125 2.686816 CGCCCGATGGAACCAACAC 61.687 63.158 0.00 0.00 0.00 3.32
1794 2144 1.141053 ACGGAAATATGGGCTGAGGAC 59.859 52.381 0.00 0.00 0.00 3.85
1805 2155 1.066858 GGCTGAGGACGAACTGATCAA 60.067 52.381 0.00 0.00 0.00 2.57
1826 2176 7.523293 TCAATGCACTCAGAAAATTCCTTAA 57.477 32.000 0.00 0.00 0.00 1.85
1828 2178 7.448161 TCAATGCACTCAGAAAATTCCTTAAGA 59.552 33.333 3.36 0.00 0.00 2.10
1860 2212 3.118738 AGGCCTCCGTAATTGACTGTAAG 60.119 47.826 0.00 0.00 42.29 2.34
1861 2213 3.118884 GGCCTCCGTAATTGACTGTAAGA 60.119 47.826 0.00 0.00 37.43 2.10
1880 2296 7.332557 TGTAAGAGTCTTGTTTGGTCTTGTAA 58.667 34.615 15.90 0.00 0.00 2.41
1897 2314 9.880064 GGTCTTGTAACTGTTCTTTTTATCTTC 57.120 33.333 0.00 0.00 0.00 2.87
1902 2319 9.216117 TGTAACTGTTCTTTTTATCTTCCTAGC 57.784 33.333 0.00 0.00 0.00 3.42
1905 2322 7.224297 ACTGTTCTTTTTATCTTCCTAGCACA 58.776 34.615 0.00 0.00 0.00 4.57
1921 2338 3.123050 AGCACACTTTTGGCGAAATTTC 58.877 40.909 8.20 8.20 0.00 2.17
1932 2350 3.516300 TGGCGAAATTTCTGTACCCTCTA 59.484 43.478 15.92 0.00 0.00 2.43
1937 2355 6.864165 GCGAAATTTCTGTACCCTCTATAGAG 59.136 42.308 21.04 21.04 41.71 2.43
1964 2419 5.125100 TGGTTGAAAAGCTAGAATGCAAG 57.875 39.130 0.00 0.00 46.34 4.01
1966 2421 5.477984 TGGTTGAAAAGCTAGAATGCAAGAT 59.522 36.000 0.00 0.00 46.34 2.40
1970 2425 7.458409 TGAAAAGCTAGAATGCAAGATCTTT 57.542 32.000 4.86 0.00 34.99 2.52
2033 2491 2.844946 TCTCACAAATGCGGACAGAAA 58.155 42.857 0.00 0.00 0.00 2.52
2052 2510 9.665264 GACAGAAAATTCAACTTTAACCACTAG 57.335 33.333 0.00 0.00 0.00 2.57
2091 2557 8.165239 AGACAAGTATAGTTGCATTTTCAACA 57.835 30.769 18.37 0.00 46.44 3.33
2092 2558 8.292448 AGACAAGTATAGTTGCATTTTCAACAG 58.708 33.333 18.37 0.00 46.44 3.16
2115 2581 7.141363 CAGTCCACTGATAAAGGTTCTTTTTG 58.859 38.462 0.00 0.00 46.59 2.44
2131 2598 5.794894 TCTTTTTGGTGTTTTGGCTGTTTA 58.205 33.333 0.00 0.00 0.00 2.01
2135 2602 4.379339 TGGTGTTTTGGCTGTTTAAGAC 57.621 40.909 0.00 0.00 0.00 3.01
2157 2624 3.181496 CGCAGTTGCAGAGACTGAGTATA 60.181 47.826 18.94 0.00 45.72 1.47
2158 2625 4.675408 CGCAGTTGCAGAGACTGAGTATAA 60.675 45.833 18.94 0.00 45.72 0.98
2189 2669 9.899226 CTTTTGCCTATAGTTTAATATTGCCTC 57.101 33.333 0.00 0.00 0.00 4.70
2286 2766 6.005583 CATGGAATGTTATTAGATGCGCTT 57.994 37.500 9.73 0.55 40.20 4.68
2371 2859 3.045142 CTGCTGCAACCAACAGGG 58.955 61.111 3.02 0.00 44.81 4.45
2381 2869 3.366985 GCAACCAACAGGGCTATGTTTAC 60.367 47.826 6.00 0.00 41.41 2.01
2382 2870 3.081710 ACCAACAGGGCTATGTTTACC 57.918 47.619 6.00 0.00 41.41 2.85
2420 2908 3.002759 GCAACGAAGACTCAAGAAAGCTT 59.997 43.478 0.00 0.00 33.74 3.74
2471 2959 2.092968 TGCTTGCCCTATGTACTTGGAG 60.093 50.000 0.00 0.00 0.00 3.86
2508 2996 3.735237 TTTTAAAAAGATGTGGCGGCA 57.265 38.095 7.97 7.97 0.00 5.69
2557 3045 3.813529 CCTTTTGGCTAGTGAACGAAG 57.186 47.619 0.00 0.00 0.00 3.79
2562 3050 2.143122 TGGCTAGTGAACGAAGCAAAG 58.857 47.619 11.34 0.00 38.01 2.77
2613 3101 0.486879 TCTGGGCCCCAATTTTGAGT 59.513 50.000 22.27 0.00 30.80 3.41
2717 3205 8.213489 TGCTATATTTGGGTATGTATCCAGAA 57.787 34.615 0.00 0.00 37.84 3.02
2786 3274 5.977129 CCAAGGTTTTGTAAGTAAAGCACAG 59.023 40.000 0.00 0.00 35.90 3.66
2831 3319 4.739735 GCAGAGGGCTATTTTAACGAGCTA 60.740 45.833 0.00 0.00 40.25 3.32
3160 3670 4.759516 TTAAGTCTTGAATTTCGGTGGC 57.240 40.909 0.00 0.00 0.00 5.01
3201 3711 8.328758 ACTGGAATATCTCATTTGTTCCAACTA 58.671 33.333 6.60 0.00 45.37 2.24
3266 3842 2.299582 CAGATGTTGTTCATTTGGGCCA 59.700 45.455 0.00 0.00 35.73 5.36
3339 3915 5.470437 TGGCAACATGAAATCTTTACGTACA 59.530 36.000 0.00 0.00 46.17 2.90
3343 3919 6.721571 ACATGAAATCTTTACGTACACTGG 57.278 37.500 0.00 0.00 0.00 4.00
3371 3947 5.183904 AGTTTGATGTGGGCTTGAATTCTAC 59.816 40.000 7.05 0.00 0.00 2.59
3391 3967 3.234353 ACAGACAACATCAGAGACCTCA 58.766 45.455 0.00 0.00 0.00 3.86
3393 3969 2.830923 AGACAACATCAGAGACCTCAGG 59.169 50.000 0.00 0.00 0.00 3.86
3394 3970 1.277557 ACAACATCAGAGACCTCAGGC 59.722 52.381 0.00 0.00 0.00 4.85
3408 3984 5.131642 AGACCTCAGGCATCTCATCAATTTA 59.868 40.000 0.00 0.00 0.00 1.40
3420 3996 6.291377 TCTCATCAATTTAAGGGATCTTCGG 58.709 40.000 0.00 0.00 34.59 4.30
3428 4004 6.740944 TTTAAGGGATCTTCGGATATGTGA 57.259 37.500 0.00 0.00 34.38 3.58
3429 4005 6.935240 TTAAGGGATCTTCGGATATGTGAT 57.065 37.500 0.00 0.00 34.38 3.06
3430 4006 4.815533 AGGGATCTTCGGATATGTGATG 57.184 45.455 0.00 0.00 34.38 3.07
3431 4007 4.420206 AGGGATCTTCGGATATGTGATGA 58.580 43.478 0.00 0.00 34.38 2.92
3432 4008 5.028802 AGGGATCTTCGGATATGTGATGAT 58.971 41.667 0.00 3.24 34.38 2.45
3433 4009 5.128499 AGGGATCTTCGGATATGTGATGATC 59.872 44.000 14.97 14.97 41.47 2.92
3434 4010 5.039984 GGATCTTCGGATATGTGATGATCG 58.960 45.833 15.92 0.00 42.35 3.69
3435 4011 5.393569 GGATCTTCGGATATGTGATGATCGT 60.394 44.000 15.92 0.00 42.35 3.73
3436 4012 5.048153 TCTTCGGATATGTGATGATCGTC 57.952 43.478 8.06 8.06 0.00 4.20
3437 4013 3.850122 TCGGATATGTGATGATCGTCC 57.150 47.619 12.42 4.69 0.00 4.79
3438 4014 2.161609 TCGGATATGTGATGATCGTCCG 59.838 50.000 12.42 7.47 46.12 4.79
3439 4015 3.850122 GGATATGTGATGATCGTCCGA 57.150 47.619 12.42 0.00 0.00 4.55
3440 4016 3.763902 GGATATGTGATGATCGTCCGAG 58.236 50.000 12.42 0.00 0.00 4.63
3441 4017 3.428180 GGATATGTGATGATCGTCCGAGG 60.428 52.174 12.42 0.00 0.00 4.63
3442 4018 1.692411 ATGTGATGATCGTCCGAGGA 58.308 50.000 12.42 0.00 0.00 3.71
3443 4019 1.470051 TGTGATGATCGTCCGAGGAA 58.530 50.000 12.42 0.00 0.00 3.36
3444 4020 1.822371 TGTGATGATCGTCCGAGGAAA 59.178 47.619 12.42 0.00 0.00 3.13
3445 4021 2.430694 TGTGATGATCGTCCGAGGAAAT 59.569 45.455 12.42 0.00 0.00 2.17
3446 4022 3.118775 TGTGATGATCGTCCGAGGAAATT 60.119 43.478 12.42 0.00 0.00 1.82
3447 4023 3.871594 GTGATGATCGTCCGAGGAAATTT 59.128 43.478 12.42 0.00 0.00 1.82
3448 4024 4.025647 GTGATGATCGTCCGAGGAAATTTC 60.026 45.833 12.42 9.83 0.00 2.17
3449 4025 2.536365 TGATCGTCCGAGGAAATTTCG 58.464 47.619 11.95 1.57 37.78 3.46
3450 4026 2.164827 TGATCGTCCGAGGAAATTTCGA 59.835 45.455 11.95 5.33 40.36 3.71
3451 4027 2.728690 TCGTCCGAGGAAATTTCGAA 57.271 45.000 11.95 0.00 40.36 3.71
3452 4028 3.241067 TCGTCCGAGGAAATTTCGAAT 57.759 42.857 11.95 0.74 40.36 3.34
3453 4029 4.374843 TCGTCCGAGGAAATTTCGAATA 57.625 40.909 11.95 0.00 40.36 1.75
3454 4030 4.107622 TCGTCCGAGGAAATTTCGAATAC 58.892 43.478 11.95 5.85 40.36 1.89
3455 4031 3.244579 CGTCCGAGGAAATTTCGAATACC 59.755 47.826 11.95 0.53 40.36 2.73
3456 4032 4.439968 GTCCGAGGAAATTTCGAATACCT 58.560 43.478 11.95 5.70 40.36 3.08
3457 4033 4.270325 GTCCGAGGAAATTTCGAATACCTG 59.730 45.833 11.95 8.87 40.36 4.00
3458 4034 4.160814 TCCGAGGAAATTTCGAATACCTGA 59.839 41.667 11.95 6.89 40.36 3.86
3762 4353 4.762765 TCTCTTAACCGCCTTAAATTGCAA 59.237 37.500 0.00 0.00 0.00 4.08
3834 4425 5.280164 GGGATTCCCTTTTCTCAAGCATTTT 60.280 40.000 14.98 0.00 41.34 1.82
3847 4438 4.221262 TCAAGCATTTTTGGCTATTCTGCT 59.779 37.500 0.00 0.00 41.66 4.24
3864 4455 3.578282 TCTGCTTCAGGATGTCACAACTA 59.422 43.478 0.00 0.00 37.40 2.24
3924 4515 3.132289 TCGAGGTAAGAATCAATTCGCCT 59.868 43.478 12.81 12.81 41.56 5.52
4097 4688 7.985184 TCCTACAGCTAACATTAAGTGTATTGG 59.015 37.037 0.00 0.00 41.14 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.321387 TAACGGCATACAACGGGCAA 60.321 50.000 0.00 0.00 0.00 4.52
5 6 0.460635 TCTAACGGCATACAACGGGC 60.461 55.000 0.00 0.00 0.00 6.13
6 7 1.283736 GTCTAACGGCATACAACGGG 58.716 55.000 0.00 0.00 0.00 5.28
7 8 1.657094 GTGTCTAACGGCATACAACGG 59.343 52.381 0.00 0.00 0.00 4.44
8 9 2.330286 TGTGTCTAACGGCATACAACG 58.670 47.619 0.00 0.00 0.00 4.10
9 10 3.581755 TCTGTGTCTAACGGCATACAAC 58.418 45.455 0.00 0.00 34.87 3.32
10 11 3.945981 TCTGTGTCTAACGGCATACAA 57.054 42.857 0.00 0.00 34.87 2.41
11 12 3.945981 TTCTGTGTCTAACGGCATACA 57.054 42.857 0.00 0.00 34.87 2.29
12 13 5.447279 CCAATTTCTGTGTCTAACGGCATAC 60.447 44.000 0.00 0.00 34.87 2.39
13 14 4.634004 CCAATTTCTGTGTCTAACGGCATA 59.366 41.667 0.00 0.00 34.87 3.14
14 15 3.440173 CCAATTTCTGTGTCTAACGGCAT 59.560 43.478 0.00 0.00 34.87 4.40
15 16 2.811431 CCAATTTCTGTGTCTAACGGCA 59.189 45.455 0.00 0.00 34.87 5.69
16 17 3.071479 TCCAATTTCTGTGTCTAACGGC 58.929 45.455 0.00 0.00 34.87 5.68
17 18 5.880054 ATTCCAATTTCTGTGTCTAACGG 57.120 39.130 0.00 0.00 36.38 4.44
18 19 6.668323 ACAATTCCAATTTCTGTGTCTAACG 58.332 36.000 0.00 0.00 0.00 3.18
19 20 8.134895 TCAACAATTCCAATTTCTGTGTCTAAC 58.865 33.333 0.00 0.00 0.00 2.34
20 21 8.231692 TCAACAATTCCAATTTCTGTGTCTAA 57.768 30.769 0.00 0.00 0.00 2.10
21 22 7.815840 TCAACAATTCCAATTTCTGTGTCTA 57.184 32.000 0.00 0.00 0.00 2.59
22 23 6.713762 TCAACAATTCCAATTTCTGTGTCT 57.286 33.333 0.00 0.00 0.00 3.41
23 24 7.951530 ATTCAACAATTCCAATTTCTGTGTC 57.048 32.000 0.00 0.00 0.00 3.67
24 25 8.206189 AGAATTCAACAATTCCAATTTCTGTGT 58.794 29.630 8.44 0.00 46.50 3.72
25 26 8.597662 AGAATTCAACAATTCCAATTTCTGTG 57.402 30.769 8.44 0.00 46.50 3.66
26 27 7.596248 CGAGAATTCAACAATTCCAATTTCTGT 59.404 33.333 8.44 0.00 46.50 3.41
27 28 7.411157 GCGAGAATTCAACAATTCCAATTTCTG 60.411 37.037 8.44 0.00 46.50 3.02
28 29 6.587608 GCGAGAATTCAACAATTCCAATTTCT 59.412 34.615 8.44 0.00 46.50 2.52
29 30 6.365789 TGCGAGAATTCAACAATTCCAATTTC 59.634 34.615 8.44 0.00 46.50 2.17
30 31 6.222389 TGCGAGAATTCAACAATTCCAATTT 58.778 32.000 8.44 0.00 46.50 1.82
31 32 5.782047 TGCGAGAATTCAACAATTCCAATT 58.218 33.333 8.44 0.00 46.50 2.32
32 33 5.389859 TGCGAGAATTCAACAATTCCAAT 57.610 34.783 8.44 0.00 46.50 3.16
33 34 4.844998 TGCGAGAATTCAACAATTCCAA 57.155 36.364 8.44 0.00 46.50 3.53
34 35 5.162794 CAATGCGAGAATTCAACAATTCCA 58.837 37.500 8.44 0.00 46.50 3.53
35 36 5.163513 ACAATGCGAGAATTCAACAATTCC 58.836 37.500 8.44 0.00 46.50 3.01
36 37 6.088824 AGACAATGCGAGAATTCAACAATTC 58.911 36.000 8.44 0.01 45.91 2.17
37 38 6.017400 AGACAATGCGAGAATTCAACAATT 57.983 33.333 8.44 0.00 34.70 2.32
38 39 5.181811 TGAGACAATGCGAGAATTCAACAAT 59.818 36.000 8.44 0.00 0.00 2.71
39 40 4.514816 TGAGACAATGCGAGAATTCAACAA 59.485 37.500 8.44 0.00 0.00 2.83
40 41 4.064388 TGAGACAATGCGAGAATTCAACA 58.936 39.130 8.44 2.90 0.00 3.33
41 42 4.436584 CCTGAGACAATGCGAGAATTCAAC 60.437 45.833 8.44 0.46 0.00 3.18
42 43 3.686241 CCTGAGACAATGCGAGAATTCAA 59.314 43.478 8.44 0.00 0.00 2.69
43 44 3.264947 CCTGAGACAATGCGAGAATTCA 58.735 45.455 8.44 0.00 0.00 2.57
44 45 2.611292 CCCTGAGACAATGCGAGAATTC 59.389 50.000 0.00 0.00 0.00 2.17
45 46 2.237143 TCCCTGAGACAATGCGAGAATT 59.763 45.455 0.00 0.00 0.00 2.17
46 47 1.833630 TCCCTGAGACAATGCGAGAAT 59.166 47.619 0.00 0.00 0.00 2.40
47 48 1.266178 TCCCTGAGACAATGCGAGAA 58.734 50.000 0.00 0.00 0.00 2.87
48 49 1.066858 GTTCCCTGAGACAATGCGAGA 60.067 52.381 0.00 0.00 0.00 4.04
49 50 1.338105 TGTTCCCTGAGACAATGCGAG 60.338 52.381 0.00 0.00 0.00 5.03
50 51 0.684535 TGTTCCCTGAGACAATGCGA 59.315 50.000 0.00 0.00 0.00 5.10
51 52 1.522668 TTGTTCCCTGAGACAATGCG 58.477 50.000 0.00 0.00 31.30 4.73
52 53 3.507233 TGATTTGTTCCCTGAGACAATGC 59.493 43.478 0.00 0.00 35.85 3.56
53 54 5.184479 ACATGATTTGTTCCCTGAGACAATG 59.816 40.000 0.00 0.00 33.74 2.82
54 55 5.184479 CACATGATTTGTTCCCTGAGACAAT 59.816 40.000 0.00 0.00 36.00 2.71
55 56 4.520111 CACATGATTTGTTCCCTGAGACAA 59.480 41.667 0.00 0.00 36.00 3.18
56 57 4.074259 CACATGATTTGTTCCCTGAGACA 58.926 43.478 0.00 0.00 36.00 3.41
57 58 3.441572 CCACATGATTTGTTCCCTGAGAC 59.558 47.826 0.00 0.00 36.00 3.36
58 59 3.689347 CCACATGATTTGTTCCCTGAGA 58.311 45.455 0.00 0.00 36.00 3.27
59 60 2.165030 GCCACATGATTTGTTCCCTGAG 59.835 50.000 0.00 0.00 36.00 3.35
60 61 2.170166 GCCACATGATTTGTTCCCTGA 58.830 47.619 0.00 0.00 36.00 3.86
61 62 2.094390 CAGCCACATGATTTGTTCCCTG 60.094 50.000 0.00 0.00 36.00 4.45
62 63 2.173519 CAGCCACATGATTTGTTCCCT 58.826 47.619 0.00 0.00 36.00 4.20
63 64 2.094545 GTCAGCCACATGATTTGTTCCC 60.095 50.000 0.00 0.00 36.00 3.97
64 65 2.557924 TGTCAGCCACATGATTTGTTCC 59.442 45.455 0.00 0.00 36.00 3.62
65 66 3.921119 TGTCAGCCACATGATTTGTTC 57.079 42.857 0.00 0.00 36.00 3.18
66 67 4.099881 AGTTTGTCAGCCACATGATTTGTT 59.900 37.500 0.00 0.00 36.00 2.83
67 68 3.638160 AGTTTGTCAGCCACATGATTTGT 59.362 39.130 0.00 0.00 39.91 2.83
68 69 4.247267 AGTTTGTCAGCCACATGATTTG 57.753 40.909 0.00 0.00 33.90 2.32
69 70 4.099881 ACAAGTTTGTCAGCCACATGATTT 59.900 37.500 0.00 0.00 36.50 2.17
70 71 3.638160 ACAAGTTTGTCAGCCACATGATT 59.362 39.130 0.00 0.00 36.50 2.57
71 72 3.225104 ACAAGTTTGTCAGCCACATGAT 58.775 40.909 0.00 0.00 36.50 2.45
72 73 2.653726 ACAAGTTTGTCAGCCACATGA 58.346 42.857 0.00 0.00 36.50 3.07
73 74 3.117794 CAACAAGTTTGTCAGCCACATG 58.882 45.455 0.00 0.00 41.31 3.21
74 75 2.481795 GCAACAAGTTTGTCAGCCACAT 60.482 45.455 9.80 0.00 41.31 3.21
75 76 1.135141 GCAACAAGTTTGTCAGCCACA 60.135 47.619 9.80 0.00 41.31 4.17
76 77 1.135141 TGCAACAAGTTTGTCAGCCAC 60.135 47.619 15.30 0.00 41.31 5.01
77 78 1.180907 TGCAACAAGTTTGTCAGCCA 58.819 45.000 15.30 5.70 41.31 4.75
78 79 2.159254 TCTTGCAACAAGTTTGTCAGCC 60.159 45.455 15.30 3.91 41.31 4.85
79 80 3.111098 CTCTTGCAACAAGTTTGTCAGC 58.889 45.455 0.00 12.61 41.31 4.26
80 81 4.361451 ACTCTTGCAACAAGTTTGTCAG 57.639 40.909 0.00 0.00 41.31 3.51
81 82 4.782019 AACTCTTGCAACAAGTTTGTCA 57.218 36.364 14.02 0.00 41.31 3.58
82 83 6.034577 GGTAAAACTCTTGCAACAAGTTTGTC 59.965 38.462 24.99 20.83 41.17 3.18
83 84 5.867174 GGTAAAACTCTTGCAACAAGTTTGT 59.133 36.000 24.99 19.15 41.17 2.83
84 85 5.004345 CGGTAAAACTCTTGCAACAAGTTTG 59.996 40.000 24.99 14.67 41.17 2.93
85 86 5.099575 CGGTAAAACTCTTGCAACAAGTTT 58.900 37.500 21.32 21.32 43.22 2.66
86 87 4.396790 TCGGTAAAACTCTTGCAACAAGTT 59.603 37.500 14.02 14.02 34.81 2.66
87 88 3.942748 TCGGTAAAACTCTTGCAACAAGT 59.057 39.130 0.00 0.00 0.00 3.16
88 89 4.272504 TCTCGGTAAAACTCTTGCAACAAG 59.727 41.667 0.00 0.00 0.00 3.16
89 90 4.193090 TCTCGGTAAAACTCTTGCAACAA 58.807 39.130 0.00 0.00 0.00 2.83
90 91 3.799366 TCTCGGTAAAACTCTTGCAACA 58.201 40.909 0.00 0.00 0.00 3.33
91 92 4.806342 TTCTCGGTAAAACTCTTGCAAC 57.194 40.909 0.00 0.00 0.00 4.17
92 93 5.821516 TTTTCTCGGTAAAACTCTTGCAA 57.178 34.783 0.00 0.00 0.00 4.08
93 94 5.529430 TGATTTTCTCGGTAAAACTCTTGCA 59.471 36.000 0.00 0.00 31.50 4.08
94 95 5.997385 TGATTTTCTCGGTAAAACTCTTGC 58.003 37.500 0.00 0.00 31.50 4.01
95 96 8.905702 CAATTGATTTTCTCGGTAAAACTCTTG 58.094 33.333 0.00 0.00 31.50 3.02
96 97 8.846211 TCAATTGATTTTCTCGGTAAAACTCTT 58.154 29.630 3.38 0.00 31.50 2.85
97 98 8.391075 TCAATTGATTTTCTCGGTAAAACTCT 57.609 30.769 3.38 0.00 31.50 3.24
98 99 9.458374 TTTCAATTGATTTTCTCGGTAAAACTC 57.542 29.630 9.40 0.00 31.50 3.01
99 100 9.981114 ATTTCAATTGATTTTCTCGGTAAAACT 57.019 25.926 9.40 0.00 31.50 2.66
104 105 8.188139 GCCTAATTTCAATTGATTTTCTCGGTA 58.812 33.333 9.40 0.00 0.00 4.02
105 106 7.035612 GCCTAATTTCAATTGATTTTCTCGGT 58.964 34.615 9.40 0.00 0.00 4.69
106 107 6.197096 CGCCTAATTTCAATTGATTTTCTCGG 59.803 38.462 9.40 5.79 0.00 4.63
107 108 6.197096 CCGCCTAATTTCAATTGATTTTCTCG 59.803 38.462 9.40 7.95 0.00 4.04
108 109 7.257722 TCCGCCTAATTTCAATTGATTTTCTC 58.742 34.615 9.40 0.00 0.00 2.87
109 110 7.169158 TCCGCCTAATTTCAATTGATTTTCT 57.831 32.000 9.40 0.00 0.00 2.52
110 111 7.706179 TCATCCGCCTAATTTCAATTGATTTTC 59.294 33.333 9.40 0.22 0.00 2.29
111 112 7.555087 TCATCCGCCTAATTTCAATTGATTTT 58.445 30.769 9.40 8.58 0.00 1.82
112 113 7.111247 TCATCCGCCTAATTTCAATTGATTT 57.889 32.000 9.40 8.93 0.00 2.17
113 114 6.713762 TCATCCGCCTAATTTCAATTGATT 57.286 33.333 9.40 4.22 0.00 2.57
114 115 6.491062 TCATCATCCGCCTAATTTCAATTGAT 59.509 34.615 9.40 0.00 0.00 2.57
115 116 5.827267 TCATCATCCGCCTAATTTCAATTGA 59.173 36.000 3.38 3.38 0.00 2.57
116 117 6.075762 TCATCATCCGCCTAATTTCAATTG 57.924 37.500 0.00 0.00 0.00 2.32
117 118 6.713762 TTCATCATCCGCCTAATTTCAATT 57.286 33.333 0.00 0.00 0.00 2.32
118 119 6.718454 AGATTCATCATCCGCCTAATTTCAAT 59.282 34.615 0.00 0.00 31.20 2.57
119 120 6.064060 AGATTCATCATCCGCCTAATTTCAA 58.936 36.000 0.00 0.00 31.20 2.69
120 121 5.624159 AGATTCATCATCCGCCTAATTTCA 58.376 37.500 0.00 0.00 31.20 2.69
121 122 6.566197 AAGATTCATCATCCGCCTAATTTC 57.434 37.500 0.00 0.00 31.20 2.17
122 123 6.966534 AAAGATTCATCATCCGCCTAATTT 57.033 33.333 0.00 0.00 31.20 1.82
123 124 7.227156 ACTAAAGATTCATCATCCGCCTAATT 58.773 34.615 0.00 0.00 31.20 1.40
124 125 6.773638 ACTAAAGATTCATCATCCGCCTAAT 58.226 36.000 0.00 0.00 31.20 1.73
125 126 6.174720 ACTAAAGATTCATCATCCGCCTAA 57.825 37.500 0.00 0.00 31.20 2.69
126 127 5.808366 ACTAAAGATTCATCATCCGCCTA 57.192 39.130 0.00 0.00 31.20 3.93
127 128 4.696479 ACTAAAGATTCATCATCCGCCT 57.304 40.909 0.00 0.00 31.20 5.52
128 129 5.757850 AAACTAAAGATTCATCATCCGCC 57.242 39.130 0.00 0.00 31.20 6.13
129 130 9.736023 AAATAAAACTAAAGATTCATCATCCGC 57.264 29.630 0.00 0.00 31.20 5.54
170 171 2.108514 CGTCATGCCGCACATCCTT 61.109 57.895 0.00 0.00 36.64 3.36
176 177 1.565156 TTCAAGTCGTCATGCCGCAC 61.565 55.000 0.00 0.00 0.00 5.34
187 188 5.801947 GGATTCCATGATTGTTTTCAAGTCG 59.198 40.000 0.00 0.00 43.41 4.18
207 214 0.106318 GGAGCTGCTTCCATGGGATT 60.106 55.000 13.02 0.00 37.20 3.01
208 215 1.535685 GGAGCTGCTTCCATGGGAT 59.464 57.895 13.02 0.00 37.20 3.85
212 219 1.453379 CAGGGGAGCTGCTTCCATG 60.453 63.158 25.55 25.55 34.47 3.66
213 220 1.617536 TCAGGGGAGCTGCTTCCAT 60.618 57.895 27.65 19.38 39.09 3.41
214 221 2.203983 TCAGGGGAGCTGCTTCCA 60.204 61.111 27.65 5.29 39.09 3.53
215 222 2.270527 GTCAGGGGAGCTGCTTCC 59.729 66.667 19.20 19.20 36.46 3.46
216 223 1.605058 TACGTCAGGGGAGCTGCTTC 61.605 60.000 2.53 0.00 0.00 3.86
217 224 1.609501 TACGTCAGGGGAGCTGCTT 60.610 57.895 2.53 0.00 0.00 3.91
218 225 2.037367 TACGTCAGGGGAGCTGCT 59.963 61.111 0.00 0.00 0.00 4.24
219 226 2.184579 GTACGTCAGGGGAGCTGC 59.815 66.667 0.00 0.00 0.00 5.25
220 227 1.513158 CAGTACGTCAGGGGAGCTG 59.487 63.158 0.00 0.00 0.00 4.24
221 228 2.352032 GCAGTACGTCAGGGGAGCT 61.352 63.158 0.00 0.00 0.00 4.09
222 229 2.184579 GCAGTACGTCAGGGGAGC 59.815 66.667 0.00 0.00 0.00 4.70
223 230 1.215647 GTGCAGTACGTCAGGGGAG 59.784 63.158 0.00 0.00 0.00 4.30
224 231 0.902984 ATGTGCAGTACGTCAGGGGA 60.903 55.000 0.00 0.00 0.00 4.81
225 232 0.740868 CATGTGCAGTACGTCAGGGG 60.741 60.000 0.00 0.00 0.00 4.79
226 233 1.361668 GCATGTGCAGTACGTCAGGG 61.362 60.000 0.00 0.00 41.59 4.45
227 234 1.361668 GGCATGTGCAGTACGTCAGG 61.362 60.000 7.36 0.00 44.36 3.86
228 235 1.686566 CGGCATGTGCAGTACGTCAG 61.687 60.000 7.36 0.00 44.36 3.51
229 236 1.736282 CGGCATGTGCAGTACGTCA 60.736 57.895 7.36 0.00 44.36 4.35
230 237 3.081133 CGGCATGTGCAGTACGTC 58.919 61.111 7.36 0.00 44.36 4.34
236 243 3.751246 CCCCAACGGCATGTGCAG 61.751 66.667 7.36 5.43 44.36 4.41
245 252 3.567579 ATGTCAGTGCCCCCAACGG 62.568 63.158 0.00 0.00 0.00 4.44
246 253 2.034066 ATGTCAGTGCCCCCAACG 59.966 61.111 0.00 0.00 0.00 4.10
247 254 1.228552 ACATGTCAGTGCCCCCAAC 60.229 57.895 0.00 0.00 0.00 3.77
248 255 1.228521 CACATGTCAGTGCCCCCAA 60.229 57.895 0.00 0.00 32.04 4.12
249 256 2.435663 CACATGTCAGTGCCCCCA 59.564 61.111 0.00 0.00 32.04 4.96
250 257 2.361610 CCACATGTCAGTGCCCCC 60.362 66.667 0.00 0.00 38.18 5.40
251 258 2.361610 CCCACATGTCAGTGCCCC 60.362 66.667 0.00 0.00 38.18 5.80
252 259 3.064324 GCCCACATGTCAGTGCCC 61.064 66.667 0.00 0.00 38.18 5.36
253 260 3.064324 GGCCCACATGTCAGTGCC 61.064 66.667 0.00 1.75 38.18 5.01
254 261 2.034687 AGGCCCACATGTCAGTGC 59.965 61.111 0.00 0.00 38.18 4.40
255 262 0.034767 ATCAGGCCCACATGTCAGTG 60.035 55.000 0.00 0.00 39.21 3.66
256 263 0.700564 AATCAGGCCCACATGTCAGT 59.299 50.000 0.00 0.00 0.00 3.41
257 264 1.386533 GAATCAGGCCCACATGTCAG 58.613 55.000 0.00 0.00 0.00 3.51
258 265 0.034186 GGAATCAGGCCCACATGTCA 60.034 55.000 0.00 0.00 0.00 3.58
259 266 0.753111 GGGAATCAGGCCCACATGTC 60.753 60.000 0.00 0.00 45.31 3.06
260 267 1.307647 GGGAATCAGGCCCACATGT 59.692 57.895 0.00 0.00 45.31 3.21
261 268 1.825191 CGGGAATCAGGCCCACATG 60.825 63.158 0.00 0.00 46.36 3.21
262 269 2.000701 TCGGGAATCAGGCCCACAT 61.001 57.895 0.00 0.00 46.36 3.21
263 270 2.609299 TCGGGAATCAGGCCCACA 60.609 61.111 0.00 0.00 46.36 4.17
264 271 2.124695 GTCGGGAATCAGGCCCAC 60.125 66.667 0.00 0.00 46.36 4.61
265 272 3.781307 CGTCGGGAATCAGGCCCA 61.781 66.667 0.00 0.00 46.36 5.36
266 273 4.547367 CCGTCGGGAATCAGGCCC 62.547 72.222 2.34 0.00 42.41 5.80
279 286 4.394712 CTGACAGGTGGGCCCGTC 62.395 72.222 19.37 18.54 38.74 4.79
281 288 4.704833 CACTGACAGGTGGGCCCG 62.705 72.222 19.37 4.81 38.74 6.13
287 294 0.751277 TGTTTGGCCACTGACAGGTG 60.751 55.000 3.88 2.99 37.00 4.00
288 295 0.466189 CTGTTTGGCCACTGACAGGT 60.466 55.000 25.11 0.00 36.68 4.00
289 296 1.799258 GCTGTTTGGCCACTGACAGG 61.799 60.000 29.81 18.63 39.80 4.00
290 297 1.656441 GCTGTTTGGCCACTGACAG 59.344 57.895 27.08 27.08 41.76 3.51
291 298 2.186160 CGCTGTTTGGCCACTGACA 61.186 57.895 3.88 10.40 0.00 3.58
292 299 2.639286 CGCTGTTTGGCCACTGAC 59.361 61.111 3.88 5.42 0.00 3.51
293 300 3.286751 GCGCTGTTTGGCCACTGA 61.287 61.111 3.88 0.00 0.00 3.41
294 301 3.547249 CTGCGCTGTTTGGCCACTG 62.547 63.158 3.88 0.00 0.00 3.66
295 302 3.289834 CTGCGCTGTTTGGCCACT 61.290 61.111 3.88 0.00 0.00 4.00
297 304 3.841137 TAGCTGCGCTGTTTGGCCA 62.841 57.895 16.05 0.00 40.10 5.36
298 305 1.937546 ATTAGCTGCGCTGTTTGGCC 61.938 55.000 16.05 0.00 40.10 5.36
299 306 0.799534 CATTAGCTGCGCTGTTTGGC 60.800 55.000 16.05 6.99 40.10 4.52
300 307 0.804364 TCATTAGCTGCGCTGTTTGG 59.196 50.000 16.05 3.51 40.10 3.28
301 308 2.617250 TTCATTAGCTGCGCTGTTTG 57.383 45.000 16.05 6.34 40.10 2.93
302 309 2.749076 TGATTCATTAGCTGCGCTGTTT 59.251 40.909 16.05 7.33 40.10 2.83
303 310 2.358957 TGATTCATTAGCTGCGCTGTT 58.641 42.857 16.05 12.50 40.10 3.16
304 311 2.028420 TGATTCATTAGCTGCGCTGT 57.972 45.000 16.05 5.50 40.10 4.40
305 312 3.002965 TCATTGATTCATTAGCTGCGCTG 59.997 43.478 9.73 10.04 40.10 5.18
306 313 3.208594 TCATTGATTCATTAGCTGCGCT 58.791 40.909 9.73 8.09 43.41 5.92
307 314 3.614159 TCATTGATTCATTAGCTGCGC 57.386 42.857 0.00 0.00 0.00 6.09
308 315 5.754778 TGATTCATTGATTCATTAGCTGCG 58.245 37.500 7.07 0.00 0.00 5.18
309 316 6.637254 CACTGATTCATTGATTCATTAGCTGC 59.363 38.462 10.72 0.00 0.00 5.25
310 317 7.139392 CCACTGATTCATTGATTCATTAGCTG 58.861 38.462 10.72 2.93 0.00 4.24
311 318 6.264744 CCCACTGATTCATTGATTCATTAGCT 59.735 38.462 10.72 0.00 0.00 3.32
312 319 6.444633 CCCACTGATTCATTGATTCATTAGC 58.555 40.000 10.72 0.00 0.00 3.09
313 320 6.040054 TGCCCACTGATTCATTGATTCATTAG 59.960 38.462 10.72 4.06 0.00 1.73
314 321 5.892686 TGCCCACTGATTCATTGATTCATTA 59.107 36.000 10.72 0.00 0.00 1.90
315 322 4.712829 TGCCCACTGATTCATTGATTCATT 59.287 37.500 10.72 4.22 0.00 2.57
316 323 4.283337 TGCCCACTGATTCATTGATTCAT 58.717 39.130 10.72 1.50 0.00 2.57
317 324 3.699413 TGCCCACTGATTCATTGATTCA 58.301 40.909 10.06 10.06 0.00 2.57
318 325 4.724074 TTGCCCACTGATTCATTGATTC 57.276 40.909 5.64 2.31 0.00 2.52
319 326 5.667466 GATTTGCCCACTGATTCATTGATT 58.333 37.500 5.64 0.00 0.00 2.57
320 327 4.202080 CGATTTGCCCACTGATTCATTGAT 60.202 41.667 5.64 0.00 0.00 2.57
321 328 3.129113 CGATTTGCCCACTGATTCATTGA 59.871 43.478 5.64 0.00 0.00 2.57
322 329 3.119388 ACGATTTGCCCACTGATTCATTG 60.119 43.478 0.00 0.00 0.00 2.82
323 330 3.091545 ACGATTTGCCCACTGATTCATT 58.908 40.909 0.00 0.00 0.00 2.57
324 331 2.726821 ACGATTTGCCCACTGATTCAT 58.273 42.857 0.00 0.00 0.00 2.57
325 332 2.198827 ACGATTTGCCCACTGATTCA 57.801 45.000 0.00 0.00 0.00 2.57
326 333 2.228822 ACAACGATTTGCCCACTGATTC 59.771 45.455 0.00 0.00 36.00 2.52
327 334 2.030007 CACAACGATTTGCCCACTGATT 60.030 45.455 0.00 0.00 36.00 2.57
328 335 1.541147 CACAACGATTTGCCCACTGAT 59.459 47.619 0.00 0.00 36.00 2.90
329 336 0.950836 CACAACGATTTGCCCACTGA 59.049 50.000 0.00 0.00 36.00 3.41
330 337 0.667993 ACACAACGATTTGCCCACTG 59.332 50.000 0.00 0.00 36.00 3.66
331 338 0.951558 GACACAACGATTTGCCCACT 59.048 50.000 0.00 0.00 36.00 4.00
332 339 0.039527 GGACACAACGATTTGCCCAC 60.040 55.000 0.00 0.00 36.00 4.61
333 340 0.466372 TGGACACAACGATTTGCCCA 60.466 50.000 0.00 0.00 36.00 5.36
334 341 0.887933 ATGGACACAACGATTTGCCC 59.112 50.000 0.00 0.00 36.00 5.36
335 342 2.486203 TGTATGGACACAACGATTTGCC 59.514 45.455 0.00 0.00 36.00 4.52
336 343 3.822594 TGTATGGACACAACGATTTGC 57.177 42.857 0.00 0.00 36.00 3.68
337 344 6.087952 CACAAATGTATGGACACAACGATTTG 59.912 38.462 0.00 0.00 38.76 2.32
338 345 6.148948 CACAAATGTATGGACACAACGATTT 58.851 36.000 0.00 0.00 38.76 2.17
339 346 5.698832 CACAAATGTATGGACACAACGATT 58.301 37.500 0.00 0.00 38.76 3.34
340 347 4.379394 GCACAAATGTATGGACACAACGAT 60.379 41.667 0.00 0.00 38.76 3.73
341 348 3.058570 GCACAAATGTATGGACACAACGA 60.059 43.478 0.00 0.00 38.76 3.85
342 349 3.233578 GCACAAATGTATGGACACAACG 58.766 45.455 0.00 0.00 38.76 4.10
343 350 3.574614 GGCACAAATGTATGGACACAAC 58.425 45.455 0.00 0.00 38.76 3.32
344 351 2.227626 CGGCACAAATGTATGGACACAA 59.772 45.455 0.00 0.00 38.76 3.33
345 352 1.809547 CGGCACAAATGTATGGACACA 59.190 47.619 0.00 0.00 38.76 3.72
346 353 1.467374 GCGGCACAAATGTATGGACAC 60.467 52.381 0.00 0.00 38.76 3.67
347 354 0.808125 GCGGCACAAATGTATGGACA 59.192 50.000 0.00 0.00 40.72 4.02
348 355 0.808125 TGCGGCACAAATGTATGGAC 59.192 50.000 0.00 0.00 0.00 4.02
349 356 0.808125 GTGCGGCACAAATGTATGGA 59.192 50.000 27.10 0.00 34.08 3.41
350 357 0.523125 CGTGCGGCACAAATGTATGG 60.523 55.000 30.23 8.97 33.40 2.74
351 358 0.523125 CCGTGCGGCACAAATGTATG 60.523 55.000 30.23 12.77 33.40 2.39
352 359 1.800032 CCGTGCGGCACAAATGTAT 59.200 52.632 30.23 0.00 33.40 2.29
353 360 3.258931 CCGTGCGGCACAAATGTA 58.741 55.556 30.23 0.00 33.40 2.29
363 370 4.899239 GGATCCTCTGCCGTGCGG 62.899 72.222 3.84 6.22 36.06 5.69
364 371 4.147449 TGGATCCTCTGCCGTGCG 62.147 66.667 14.23 0.00 0.00 5.34
365 372 2.512515 GTGGATCCTCTGCCGTGC 60.513 66.667 14.23 0.00 0.00 5.34
366 373 2.202797 CGTGGATCCTCTGCCGTG 60.203 66.667 14.23 0.00 0.00 4.94
367 374 2.680352 ACGTGGATCCTCTGCCGT 60.680 61.111 14.23 10.27 0.00 5.68
368 375 2.105128 GACGTGGATCCTCTGCCG 59.895 66.667 14.23 9.65 0.00 5.69
369 376 2.501610 GGACGTGGATCCTCTGCC 59.498 66.667 14.23 9.42 35.68 4.85
370 377 2.105128 CGGACGTGGATCCTCTGC 59.895 66.667 14.23 3.91 36.52 4.26
371 378 2.786495 CCCGGACGTGGATCCTCTG 61.786 68.421 14.23 7.31 36.52 3.35
372 379 2.299727 ATCCCGGACGTGGATCCTCT 62.300 60.000 14.23 0.00 38.20 3.69
373 380 1.833049 ATCCCGGACGTGGATCCTC 60.833 63.158 14.23 8.71 38.20 3.71
374 381 2.282446 ATCCCGGACGTGGATCCT 59.718 61.111 14.23 0.00 38.20 3.24
377 384 2.842936 GGGATCCCGGACGTGGAT 60.843 66.667 17.02 5.63 45.32 3.41
378 385 3.689561 ATGGGATCCCGGACGTGGA 62.690 63.158 26.03 5.93 39.42 4.02
379 386 3.161450 ATGGGATCCCGGACGTGG 61.161 66.667 26.03 0.00 39.42 4.94
380 387 1.396607 TACATGGGATCCCGGACGTG 61.397 60.000 26.03 19.30 39.42 4.49
381 388 1.075822 TACATGGGATCCCGGACGT 60.076 57.895 26.03 20.17 39.42 4.34
382 389 1.113517 ACTACATGGGATCCCGGACG 61.114 60.000 26.03 15.59 39.42 4.79
383 390 0.680061 GACTACATGGGATCCCGGAC 59.320 60.000 26.03 8.93 39.42 4.79
384 391 0.471211 GGACTACATGGGATCCCGGA 60.471 60.000 26.03 10.04 39.42 5.14
385 392 0.762842 TGGACTACATGGGATCCCGG 60.763 60.000 26.03 21.79 39.42 5.73
386 393 1.128200 TTGGACTACATGGGATCCCG 58.872 55.000 26.03 15.00 39.42 5.14
387 394 1.202651 CGTTGGACTACATGGGATCCC 60.203 57.143 25.22 25.22 0.00 3.85
388 395 1.810412 GCGTTGGACTACATGGGATCC 60.810 57.143 1.92 1.92 0.00 3.36
389 396 1.139058 AGCGTTGGACTACATGGGATC 59.861 52.381 0.00 0.00 0.00 3.36
390 397 1.204146 AGCGTTGGACTACATGGGAT 58.796 50.000 0.00 0.00 0.00 3.85
391 398 0.981183 AAGCGTTGGACTACATGGGA 59.019 50.000 0.00 0.00 0.00 4.37
392 399 1.086696 CAAGCGTTGGACTACATGGG 58.913 55.000 0.00 0.00 0.00 4.00
393 400 0.447801 GCAAGCGTTGGACTACATGG 59.552 55.000 0.00 0.00 0.00 3.66
394 401 1.442769 AGCAAGCGTTGGACTACATG 58.557 50.000 0.00 0.00 0.00 3.21
395 402 2.185004 AAGCAAGCGTTGGACTACAT 57.815 45.000 0.00 0.00 0.00 2.29
396 403 1.961793 AAAGCAAGCGTTGGACTACA 58.038 45.000 0.00 0.00 0.00 2.74
397 404 2.803956 TGTAAAGCAAGCGTTGGACTAC 59.196 45.455 3.50 0.00 0.00 2.73
398 405 3.064207 CTGTAAAGCAAGCGTTGGACTA 58.936 45.455 3.50 0.00 0.00 2.59
399 406 1.873591 CTGTAAAGCAAGCGTTGGACT 59.126 47.619 3.50 0.00 0.00 3.85
400 407 1.663161 GCTGTAAAGCAAGCGTTGGAC 60.663 52.381 0.00 0.00 34.41 4.02
401 408 0.591170 GCTGTAAAGCAAGCGTTGGA 59.409 50.000 0.00 0.00 34.41 3.53
402 409 0.593128 AGCTGTAAAGCAAGCGTTGG 59.407 50.000 7.85 0.00 37.25 3.77
403 410 1.264020 TGAGCTGTAAAGCAAGCGTTG 59.736 47.619 7.85 0.00 37.25 4.10
404 411 1.532868 CTGAGCTGTAAAGCAAGCGTT 59.467 47.619 7.85 0.00 37.25 4.84
420 427 1.450312 GTGCCCACCCGATTCTGAG 60.450 63.158 0.00 0.00 0.00 3.35
422 429 2.040544 GTGTGCCCACCCGATTCTG 61.041 63.158 0.00 0.00 35.44 3.02
434 441 0.322975 AGGACTGATGACTGTGTGCC 59.677 55.000 0.00 0.00 0.00 5.01
435 442 1.001293 TGAGGACTGATGACTGTGTGC 59.999 52.381 0.00 0.00 0.00 4.57
446 453 4.871822 TGGAGATGACTAATGAGGACTGA 58.128 43.478 0.00 0.00 0.00 3.41
456 463 2.314852 TCTGGGGTCTGGAGATGACTAA 59.685 50.000 0.00 0.00 35.04 2.24
471 478 3.866582 GGTGCTCCGGATCTGGGG 61.867 72.222 20.82 19.00 0.00 4.96
496 512 1.838073 TTGCCTTTCCCCTCGTCTCC 61.838 60.000 0.00 0.00 0.00 3.71
566 582 4.773117 GACTCGACCACCGGCGAC 62.773 72.222 9.30 0.00 39.14 5.19
703 747 2.855953 GCCAAAATCAATCGGATCGCAG 60.856 50.000 0.00 0.00 34.28 5.18
706 750 3.809832 ACTAGCCAAAATCAATCGGATCG 59.190 43.478 0.00 0.00 34.28 3.69
730 774 2.097954 TGAATCATGAACCGATGCAAGC 59.902 45.455 0.00 0.00 0.00 4.01
731 775 3.242969 CCTGAATCATGAACCGATGCAAG 60.243 47.826 0.00 0.00 27.74 4.01
732 776 2.684374 CCTGAATCATGAACCGATGCAA 59.316 45.455 0.00 0.00 27.74 4.08
733 777 2.291365 CCTGAATCATGAACCGATGCA 58.709 47.619 0.00 0.00 0.00 3.96
734 778 2.292267 ACCTGAATCATGAACCGATGC 58.708 47.619 0.00 0.00 0.00 3.91
735 779 3.001634 CGAACCTGAATCATGAACCGATG 59.998 47.826 0.00 0.00 0.00 3.84
736 780 3.118775 TCGAACCTGAATCATGAACCGAT 60.119 43.478 0.00 0.00 0.00 4.18
737 781 2.232696 TCGAACCTGAATCATGAACCGA 59.767 45.455 0.00 0.00 0.00 4.69
738 782 2.616960 TCGAACCTGAATCATGAACCG 58.383 47.619 0.00 0.00 0.00 4.44
760 804 3.832527 TGAAAAAGGAGAAGGAAGTGGG 58.167 45.455 0.00 0.00 0.00 4.61
771 815 3.057946 GGTAGCTGTGCTTGAAAAAGGAG 60.058 47.826 0.00 0.00 40.44 3.69
775 827 3.888323 TCATGGTAGCTGTGCTTGAAAAA 59.112 39.130 0.00 0.00 40.44 1.94
799 859 2.229784 CACTCAAATCAGCCCCTTGAAC 59.770 50.000 0.00 0.00 0.00 3.18
805 865 1.203287 GAAAGCACTCAAATCAGCCCC 59.797 52.381 0.00 0.00 0.00 5.80
821 881 3.614092 ACTGCATCTACCATGTGGAAAG 58.386 45.455 5.96 3.21 38.94 2.62
826 892 3.337358 TGTTGACTGCATCTACCATGTG 58.663 45.455 0.00 0.00 32.63 3.21
833 899 1.272212 TGCGTCTGTTGACTGCATCTA 59.728 47.619 9.99 0.00 42.71 1.98
875 942 4.601857 ACCCAGGACTGATTTTCCTTTCTA 59.398 41.667 0.00 0.00 40.95 2.10
906 978 6.579666 TCATCTTTCCAATTCTGAAGTTGG 57.420 37.500 17.93 17.93 44.92 3.77
1041 1121 3.825160 AAGCTTTGCGAGGACGGCA 62.825 57.895 0.00 0.00 40.15 5.69
1042 1122 3.050275 AAGCTTTGCGAGGACGGC 61.050 61.111 0.00 0.00 40.15 5.68
1053 1133 4.982701 AGCAGGCCGCCAAGCTTT 62.983 61.111 20.19 3.67 44.04 3.51
1064 1144 0.742635 GTACTCTCCAGCAAGCAGGC 60.743 60.000 0.00 0.00 0.00 4.85
1065 1145 0.610174 TGTACTCTCCAGCAAGCAGG 59.390 55.000 0.00 0.00 0.00 4.85
1071 1151 1.586541 CAGCGTGTACTCTCCAGCA 59.413 57.895 0.00 0.00 0.00 4.41
1077 1157 1.613925 TCTTTCAGCAGCGTGTACTCT 59.386 47.619 0.00 0.00 0.00 3.24
1101 1181 1.686052 AGGAACATGATCTCGCCTCTC 59.314 52.381 0.00 0.00 0.00 3.20
1103 1183 2.611225 AAGGAACATGATCTCGCCTC 57.389 50.000 0.00 0.00 0.00 4.70
1131 1211 2.680312 ATACACGCATGCTCTCAAGT 57.320 45.000 17.13 1.52 0.00 3.16
1134 1214 1.482182 AGGAATACACGCATGCTCTCA 59.518 47.619 17.13 0.00 0.00 3.27
1170 1250 4.067512 TCAGGCTCCTCCTCCGCT 62.068 66.667 0.00 0.00 45.52 5.52
1235 1318 0.807667 ATCAACGCTGTCCTCGATGC 60.808 55.000 0.00 0.00 31.22 3.91
1295 1378 6.882768 AAATAAACCCCTTAAATCCATGCA 57.117 33.333 0.00 0.00 0.00 3.96
1329 1412 3.852471 TTGATCGTCGTCAACAAGTTG 57.148 42.857 6.60 6.60 41.71 3.16
1392 1475 2.103042 GCTCACCTCCATGACACGC 61.103 63.158 0.00 0.00 0.00 5.34
1419 1502 4.877823 GCATCATCAATCTTGTACCTCACA 59.122 41.667 0.00 0.00 34.51 3.58
1420 1503 5.007430 CAGCATCATCAATCTTGTACCTCAC 59.993 44.000 0.00 0.00 0.00 3.51
1452 1535 6.773976 ATGTCTATGGTTGTATTGTTTGGG 57.226 37.500 0.00 0.00 0.00 4.12
1521 1604 4.770362 TCATCCCTCGGCCCGTCA 62.770 66.667 1.63 0.00 0.00 4.35
1558 1905 0.108585 GCAGAACCACCCTCTTCACA 59.891 55.000 0.00 0.00 0.00 3.58
1586 1933 3.107601 CCCACAATAGAGAGGACCTTCA 58.892 50.000 0.00 0.00 0.00 3.02
1635 1985 1.816074 TGTGGTAAATCTGGTTCGCC 58.184 50.000 0.00 0.00 37.92 5.54
1658 2008 0.179029 ACACTGGTACTGCGGCTTTT 60.179 50.000 0.00 0.00 0.00 2.27
1663 2013 1.361668 GCATGACACTGGTACTGCGG 61.362 60.000 0.00 0.00 0.00 5.69
1664 2014 0.390340 AGCATGACACTGGTACTGCG 60.390 55.000 0.00 0.00 38.72 5.18
1680 2030 2.817258 CTGGGATACGGAAACAAAAGCA 59.183 45.455 0.00 0.00 37.60 3.91
1695 2045 6.953520 TCATTCTTATGTTTGGTTTCTGGGAT 59.046 34.615 0.00 0.00 33.34 3.85
1761 2111 1.231221 TTTCCGTGTTGGTTCCATCG 58.769 50.000 0.00 0.00 39.52 3.84
1775 2125 1.873903 CGTCCTCAGCCCATATTTCCG 60.874 57.143 0.00 0.00 0.00 4.30
1794 2144 3.256558 TCTGAGTGCATTGATCAGTTCG 58.743 45.455 16.07 0.00 41.01 3.95
1805 2155 7.765695 TTCTTAAGGAATTTTCTGAGTGCAT 57.234 32.000 1.85 0.00 0.00 3.96
1839 2189 2.973694 TACAGTCAATTACGGAGGCC 57.026 50.000 0.00 0.00 0.00 5.19
1860 2212 5.585047 ACAGTTACAAGACCAAACAAGACTC 59.415 40.000 0.00 0.00 0.00 3.36
1861 2213 5.497474 ACAGTTACAAGACCAAACAAGACT 58.503 37.500 0.00 0.00 0.00 3.24
1864 2227 6.436843 AGAACAGTTACAAGACCAAACAAG 57.563 37.500 0.00 0.00 0.00 3.16
1880 2296 7.173390 GTGTGCTAGGAAGATAAAAAGAACAGT 59.827 37.037 0.00 0.00 0.00 3.55
1897 2314 1.234821 TTCGCCAAAAGTGTGCTAGG 58.765 50.000 0.00 0.00 0.00 3.02
1902 2319 4.111916 ACAGAAATTTCGCCAAAAGTGTG 58.888 39.130 12.42 4.20 0.00 3.82
1905 2322 4.261867 GGGTACAGAAATTTCGCCAAAAGT 60.262 41.667 12.42 6.68 0.00 2.66
1932 2350 3.589288 AGCTTTTCAACCAGGACCTCTAT 59.411 43.478 0.00 0.00 0.00 1.98
1937 2355 3.418684 TCTAGCTTTTCAACCAGGACC 57.581 47.619 0.00 0.00 0.00 4.46
1940 2358 3.507233 TGCATTCTAGCTTTTCAACCAGG 59.493 43.478 0.00 0.00 34.99 4.45
1943 2361 5.376854 TCTTGCATTCTAGCTTTTCAACC 57.623 39.130 0.00 0.00 34.99 3.77
1944 2362 6.850555 AGATCTTGCATTCTAGCTTTTCAAC 58.149 36.000 0.00 0.00 34.99 3.18
1998 2456 8.031277 GCATTTGTGAGAACCAAGATTATTTCT 58.969 33.333 0.00 0.00 35.70 2.52
1999 2457 7.008628 CGCATTTGTGAGAACCAAGATTATTTC 59.991 37.037 0.00 0.00 0.00 2.17
2006 2464 1.879380 CCGCATTTGTGAGAACCAAGA 59.121 47.619 0.00 0.00 0.00 3.02
2033 2491 9.841295 TGAAGTACTAGTGGTTAAAGTTGAATT 57.159 29.630 5.39 0.00 0.00 2.17
2075 2535 4.887071 AGTGGACTGTTGAAAATGCAACTA 59.113 37.500 5.88 0.00 46.31 2.24
2091 2557 6.265422 CCAAAAAGAACCTTTATCAGTGGACT 59.735 38.462 0.00 0.00 0.00 3.85
2092 2558 6.040504 ACCAAAAAGAACCTTTATCAGTGGAC 59.959 38.462 0.00 0.00 0.00 4.02
2115 2581 3.368495 CGTCTTAAACAGCCAAAACACC 58.632 45.455 0.00 0.00 0.00 4.16
2131 2598 0.390860 AGTCTCTGCAACTGCGTCTT 59.609 50.000 0.00 0.00 45.83 3.01
2135 2602 0.319383 ACTCAGTCTCTGCAACTGCG 60.319 55.000 11.44 8.49 43.09 5.18
2303 2791 7.221450 GGGTAGTTGTTATTATCATGCTACCA 58.779 38.462 21.82 0.00 40.82 3.25
2369 2857 4.781934 ACTTCATCTGGTAAACATAGCCC 58.218 43.478 0.00 0.00 0.00 5.19
2371 2859 6.109359 AGTGACTTCATCTGGTAAACATAGC 58.891 40.000 0.00 0.00 0.00 2.97
2381 2869 3.369147 CGTTGCTTAGTGACTTCATCTGG 59.631 47.826 0.00 0.00 0.00 3.86
2382 2870 4.237724 TCGTTGCTTAGTGACTTCATCTG 58.762 43.478 0.00 0.00 0.00 2.90
2471 2959 9.920826 CTTTTTAAAATTTGAGCTGAAACTTCC 57.079 29.630 0.00 0.00 0.00 3.46
2557 3045 1.067354 CCCAATGCTCCTTCACTTTGC 60.067 52.381 0.00 0.00 0.00 3.68
2624 3112 4.706962 AGTATTTGCCTCATTCCTTCCAAC 59.293 41.667 0.00 0.00 0.00 3.77
2729 3217 4.286549 TGCCTGACCAAATCATTTTTCCAT 59.713 37.500 0.00 0.00 36.48 3.41
2786 3274 0.035458 CGTCCTCTGGATATTGCCCC 59.965 60.000 0.00 0.00 32.73 5.80
2831 3319 3.944015 GCTGAATGATGCCTCTGTTAACT 59.056 43.478 7.22 0.00 0.00 2.24
3083 3576 5.755813 GCATATGCAGAGTTACCAAATCTG 58.244 41.667 22.84 11.02 42.70 2.90
3160 3670 2.739943 TCCAGTGAGGTCAGGTATCTG 58.260 52.381 0.00 0.00 38.07 2.90
3201 3711 9.413734 CCATCTCCTTTAATTTTCAGATACCTT 57.586 33.333 0.00 0.00 0.00 3.50
3221 3731 6.148811 TGACGGAACTTGAAATTTACCATCTC 59.851 38.462 0.00 0.00 0.00 2.75
3232 3742 4.196193 ACAACATCTGACGGAACTTGAAA 58.804 39.130 10.02 0.00 0.00 2.69
3266 3842 0.671781 GACGATCAGGTGCTGCAACT 60.672 55.000 15.77 15.77 0.00 3.16
3334 3910 4.150627 CACATCAAACTCTTCCAGTGTACG 59.849 45.833 0.00 0.00 34.56 3.67
3339 3915 2.815589 GCCCACATCAAACTCTTCCAGT 60.816 50.000 0.00 0.00 36.64 4.00
3343 3919 3.149196 TCAAGCCCACATCAAACTCTTC 58.851 45.455 0.00 0.00 0.00 2.87
3371 3947 3.368220 CCTGAGGTCTCTGATGTTGTCTG 60.368 52.174 6.46 0.00 0.00 3.51
3391 3967 5.393068 TCCCTTAAATTGATGAGATGCCT 57.607 39.130 0.00 0.00 0.00 4.75
3393 3969 7.521871 AAGATCCCTTAAATTGATGAGATGC 57.478 36.000 0.00 0.00 0.00 3.91
3394 3970 7.094890 CCGAAGATCCCTTAAATTGATGAGATG 60.095 40.741 0.00 0.00 31.62 2.90
3408 3984 4.840680 TCATCACATATCCGAAGATCCCTT 59.159 41.667 0.00 0.00 33.67 3.95
3420 3996 3.440522 TCCTCGGACGATCATCACATATC 59.559 47.826 0.00 0.00 0.00 1.63
3428 4004 3.123804 CGAAATTTCCTCGGACGATCAT 58.876 45.455 12.54 0.00 32.62 2.45
3429 4005 2.164827 TCGAAATTTCCTCGGACGATCA 59.835 45.455 12.54 0.00 36.93 2.92
3430 4006 2.805845 TCGAAATTTCCTCGGACGATC 58.194 47.619 12.54 0.00 36.93 3.69
3431 4007 2.953466 TCGAAATTTCCTCGGACGAT 57.047 45.000 12.54 0.00 36.93 3.73
3432 4008 2.728690 TTCGAAATTTCCTCGGACGA 57.271 45.000 12.54 2.38 36.93 4.20
3433 4009 3.244579 GGTATTCGAAATTTCCTCGGACG 59.755 47.826 12.54 0.00 36.93 4.79
3434 4010 4.270325 CAGGTATTCGAAATTTCCTCGGAC 59.730 45.833 12.54 4.82 36.93 4.79
3435 4011 4.160814 TCAGGTATTCGAAATTTCCTCGGA 59.839 41.667 12.54 1.24 36.93 4.55
3436 4012 4.439057 TCAGGTATTCGAAATTTCCTCGG 58.561 43.478 12.54 0.00 36.93 4.63
3437 4013 5.050091 CCATCAGGTATTCGAAATTTCCTCG 60.050 44.000 12.54 2.07 37.66 4.63
3438 4014 6.305693 CCATCAGGTATTCGAAATTTCCTC 57.694 41.667 12.54 0.00 0.00 3.71
3454 4030 4.588899 TCCATGTTGTAAAGACCATCAGG 58.411 43.478 0.00 0.00 42.21 3.86
3455 4031 5.449588 GCATCCATGTTGTAAAGACCATCAG 60.450 44.000 0.00 0.00 0.00 2.90
3456 4032 4.398988 GCATCCATGTTGTAAAGACCATCA 59.601 41.667 0.00 0.00 0.00 3.07
3457 4033 4.398988 TGCATCCATGTTGTAAAGACCATC 59.601 41.667 0.00 0.00 0.00 3.51
3458 4034 4.343231 TGCATCCATGTTGTAAAGACCAT 58.657 39.130 0.00 0.00 0.00 3.55
3762 4353 3.821033 CAGTTTCAGGTTTCCCTTCGATT 59.179 43.478 0.00 0.00 39.89 3.34
3820 4411 6.869913 CAGAATAGCCAAAAATGCTTGAGAAA 59.130 34.615 0.00 0.00 40.23 2.52
3834 4425 3.054139 ACATCCTGAAGCAGAATAGCCAA 60.054 43.478 0.00 0.00 32.44 4.52
3847 4438 6.826231 TCAAAAGTTAGTTGTGACATCCTGAA 59.174 34.615 0.00 0.00 0.00 3.02
3864 4455 2.452600 TTGTCCCTGCCTCAAAAGTT 57.547 45.000 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.