Multiple sequence alignment - TraesCS3B01G031500
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G031500
chr3B
100.000
3608
0
0
1
3608
14328207
14331814
0.000000e+00
6663.0
1
TraesCS3B01G031500
chr3B
100.000
32
0
0
3577
3608
821835840
821835871
3.890000e-05
60.2
2
TraesCS3B01G031500
chr3D
93.782
3538
187
14
2
3516
10133527
10137054
0.000000e+00
5284.0
3
TraesCS3B01G031500
chr3D
83.735
498
54
14
3043
3517
196981046
196980553
2.560000e-121
446.0
4
TraesCS3B01G031500
chr5B
86.297
686
69
8
2853
3517
371181326
371182007
0.000000e+00
723.0
5
TraesCS3B01G031500
chr5B
89.855
207
18
3
2835
3041
371186023
371186226
2.760000e-66
263.0
6
TraesCS3B01G031500
chr5B
100.000
28
0
0
3577
3604
6420193
6420166
7.000000e-03
52.8
7
TraesCS3B01G031500
chr5B
100.000
28
0
0
3577
3604
686898821
686898794
7.000000e-03
52.8
8
TraesCS3B01G031500
chr7D
85.776
689
88
9
2834
3517
2838926
2838243
0.000000e+00
721.0
9
TraesCS3B01G031500
chr7D
100.000
28
0
0
3577
3604
457226509
457226482
7.000000e-03
52.8
10
TraesCS3B01G031500
chr1B
81.283
561
80
13
2978
3516
456964390
456963833
7.160000e-117
431.0
11
TraesCS3B01G031500
chr4D
100.000
29
0
0
3577
3605
493842088
493842116
2.000000e-03
54.7
12
TraesCS3B01G031500
chr4A
100.000
29
0
0
3577
3605
706603611
706603583
2.000000e-03
54.7
13
TraesCS3B01G031500
chr7B
100.000
28
0
0
3577
3604
11093255
11093282
7.000000e-03
52.8
14
TraesCS3B01G031500
chr1A
100.000
28
0
0
3577
3604
15355902
15355929
7.000000e-03
52.8
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G031500
chr3B
14328207
14331814
3607
False
6663
6663
100.000
1
3608
1
chr3B.!!$F1
3607
1
TraesCS3B01G031500
chr3D
10133527
10137054
3527
False
5284
5284
93.782
2
3516
1
chr3D.!!$F1
3514
2
TraesCS3B01G031500
chr5B
371181326
371182007
681
False
723
723
86.297
2853
3517
1
chr5B.!!$F1
664
3
TraesCS3B01G031500
chr7D
2838243
2838926
683
True
721
721
85.776
2834
3517
1
chr7D.!!$R1
683
4
TraesCS3B01G031500
chr1B
456963833
456964390
557
True
431
431
81.283
2978
3516
1
chr1B.!!$R1
538
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
40
41
0.036732
TGCAGCCAAGAATTCGGAGT
59.963
50.0
3.75
0.0
0.00
3.85
F
128
129
0.250727
GCAGCAACTTCAGTGGGGTA
60.251
55.0
0.00
0.0
0.00
3.69
F
1925
1926
0.178981
AGCTTTCTTGAGGCAGCCAA
60.179
50.0
15.80
0.0
32.25
4.52
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1390
1391
0.106894
GATAACTCCGGGGCTTCCAG
59.893
60.0
0.00
0.0
34.36
3.86
R
2031
2032
0.307760
CCGTCAAACTGTTGCAGGAC
59.692
55.0
0.00
0.0
35.51
3.85
R
3583
3608
0.035820
AATAGCGGCGGACCTTCAAA
60.036
50.0
9.78
0.0
0.00
2.69
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
24
25
0.036952
GCTCAACCTCAGTAGCTGCA
60.037
55.000
4.12
0.00
32.18
4.41
27
28
1.023513
CAACCTCAGTAGCTGCAGCC
61.024
60.000
34.39
20.47
43.38
4.85
29
30
1.297689
CCTCAGTAGCTGCAGCCAA
59.702
57.895
34.39
20.82
43.38
4.52
33
34
1.280133
TCAGTAGCTGCAGCCAAGAAT
59.720
47.619
34.39
17.78
43.38
2.40
34
35
2.089980
CAGTAGCTGCAGCCAAGAATT
58.910
47.619
34.39
17.02
43.38
2.17
35
36
2.097142
CAGTAGCTGCAGCCAAGAATTC
59.903
50.000
34.39
13.10
43.38
2.17
36
37
1.063174
GTAGCTGCAGCCAAGAATTCG
59.937
52.381
34.39
0.00
43.38
3.34
37
38
1.138247
GCTGCAGCCAAGAATTCGG
59.862
57.895
28.76
0.00
34.31
4.30
38
39
1.308069
GCTGCAGCCAAGAATTCGGA
61.308
55.000
28.76
0.00
34.31
4.55
39
40
0.731417
CTGCAGCCAAGAATTCGGAG
59.269
55.000
0.00
0.00
0.00
4.63
40
41
0.036732
TGCAGCCAAGAATTCGGAGT
59.963
50.000
3.75
0.00
0.00
3.85
56
57
2.219325
GAGTGCGAGTGGGAGGTGAG
62.219
65.000
0.00
0.00
0.00
3.51
75
76
3.034635
GAGATCAGCCCCTCTTTGACTA
58.965
50.000
0.00
0.00
0.00
2.59
80
81
1.630878
AGCCCCTCTTTGACTACCTTG
59.369
52.381
0.00
0.00
0.00
3.61
83
84
2.025887
CCCCTCTTTGACTACCTTGCAT
60.026
50.000
0.00
0.00
0.00
3.96
91
92
3.930336
TGACTACCTTGCATCACTTGAG
58.070
45.455
0.00
0.00
0.00
3.02
112
113
4.764172
AGGTATTTAGACTTGAGCTGCAG
58.236
43.478
10.11
10.11
0.00
4.41
128
129
0.250727
GCAGCAACTTCAGTGGGGTA
60.251
55.000
0.00
0.00
0.00
3.69
143
144
2.911552
GGGTACAGATCCCCCAAAAA
57.088
50.000
0.00
0.00
39.08
1.94
183
184
6.108015
AGTCTTCAGCATCTTGATCTTTCTC
58.892
40.000
0.00
0.00
0.00
2.87
184
185
5.005586
GTCTTCAGCATCTTGATCTTTCTCG
59.994
44.000
0.00
0.00
0.00
4.04
203
204
2.341176
GCAAGCTTTGTGGGCAGG
59.659
61.111
0.00
0.00
0.00
4.85
237
238
6.156949
ACAGCTTGGTAATCTCTCCAATCTTA
59.843
38.462
0.00
0.00
41.89
2.10
278
279
6.352516
GGACAATCCTTTGTACTCAGATGAT
58.647
40.000
0.00
0.00
46.01
2.45
341
342
5.513495
CGATATGAGCTCGGTTAATCTTAGC
59.487
44.000
9.64
2.55
32.58
3.09
345
346
3.786635
AGCTCGGTTAATCTTAGCACAG
58.213
45.455
11.24
0.00
35.63
3.66
346
347
3.195825
AGCTCGGTTAATCTTAGCACAGT
59.804
43.478
11.24
0.00
35.63
3.55
396
397
6.324561
AGCTTCCTTCATTGAAAGTTCTTC
57.675
37.500
0.01
0.00
0.00
2.87
487
488
4.929808
GGTGTTGGATATCAGCGGTAATAG
59.070
45.833
4.83
0.00
0.00
1.73
499
500
2.213499
CGGTAATAGCTTTCAGGCTGG
58.787
52.381
15.73
0.00
43.01
4.85
568
569
4.227982
TGATCTCTCCCAATGTGATTTCCA
59.772
41.667
0.00
0.00
0.00
3.53
572
573
2.101917
CTCCCAATGTGATTTCCATGGC
59.898
50.000
6.96
0.00
0.00
4.40
575
576
2.101917
CCAATGTGATTTCCATGGCTCC
59.898
50.000
6.96
0.00
0.00
4.70
731
732
4.422592
ACCACAGGGGATATAGGAGAACTA
59.577
45.833
0.00
0.00
41.15
2.24
842
843
8.877195
TGGTTTAGACCTCTAACTAATTTGACT
58.123
33.333
3.79
0.00
46.66
3.41
913
914
1.692411
GGAGCACTTCCAAAACTGGT
58.308
50.000
0.00
0.00
46.01
4.00
917
918
4.321230
GGAGCACTTCCAAAACTGGTTATG
60.321
45.833
0.00
0.00
46.01
1.90
920
921
4.217550
GCACTTCCAAAACTGGTTATGCTA
59.782
41.667
8.19
0.00
32.41
3.49
1062
1063
3.274288
GGTTCCTTCATTCAGGCTACAG
58.726
50.000
0.00
0.00
33.35
2.74
1105
1106
0.682855
GATTGGACCCGCATTCCCAA
60.683
55.000
0.00
0.00
42.16
4.12
1119
1120
1.679977
CCCAACATGGCTCAGGTGG
60.680
63.158
0.00
2.16
35.79
4.61
1135
1136
2.821969
AGGTGGCAATCTGACATTCAAC
59.178
45.455
0.00
0.00
37.93
3.18
1263
1264
1.425066
ACACTCCCAGCATCCTTTGAA
59.575
47.619
0.00
0.00
0.00
2.69
1270
1271
2.159338
CCAGCATCCTTTGAAACGATGG
60.159
50.000
15.33
1.77
35.09
3.51
1276
1277
2.813754
TCCTTTGAAACGATGGAAGCAG
59.186
45.455
0.00
0.00
0.00
4.24
1277
1278
2.813754
CCTTTGAAACGATGGAAGCAGA
59.186
45.455
0.00
0.00
0.00
4.26
1280
1281
2.964740
TGAAACGATGGAAGCAGAGAG
58.035
47.619
0.00
0.00
0.00
3.20
1294
1295
4.100373
AGCAGAGAGAATGGACCTAAGTT
58.900
43.478
0.00
0.00
0.00
2.66
1295
1296
4.534103
AGCAGAGAGAATGGACCTAAGTTT
59.466
41.667
0.00
0.00
0.00
2.66
1390
1391
1.524482
GGGACACTGCCCTCAGATC
59.476
63.158
0.00
0.00
45.12
2.75
1391
1392
0.980231
GGGACACTGCCCTCAGATCT
60.980
60.000
0.00
0.00
45.12
2.75
1400
1401
1.704007
CCCTCAGATCTGGAAGCCCC
61.704
65.000
22.42
0.00
0.00
5.80
1437
1438
6.985645
TGCTTGCTCTTTACAACAATTCAATT
59.014
30.769
0.00
0.00
0.00
2.32
1489
1490
9.768662
GCAATTATTCATTGGAAATATTGGACT
57.231
29.630
12.57
0.00
42.51
3.85
1523
1524
1.938585
CTGACAGGAGAGGTACCCAA
58.061
55.000
8.74
0.00
0.00
4.12
1556
1557
0.681243
GATCTTGGGGGCTTCACACC
60.681
60.000
0.00
0.00
0.00
4.16
1662
1663
7.312657
TCTTGATCTTGCATACAATCAGTTC
57.687
36.000
0.00
0.00
34.61
3.01
1725
1726
1.634757
TTGCATTGCTACGACTGCGG
61.635
55.000
10.49
0.00
43.17
5.69
1806
1807
1.210155
GGACCTCGCATGCAACAAC
59.790
57.895
19.57
5.60
0.00
3.32
1873
1874
6.132791
TCGCTCGGATTAATGGATATAGTC
57.867
41.667
0.00
0.00
0.00
2.59
1886
1887
7.803487
ATGGATATAGTCATTCACTGGATGA
57.197
36.000
0.00
0.00
36.43
2.92
1925
1926
0.178981
AGCTTTCTTGAGGCAGCCAA
60.179
50.000
15.80
0.00
32.25
4.52
1929
1930
1.737838
TTCTTGAGGCAGCCAATACG
58.262
50.000
15.80
0.00
0.00
3.06
1947
1948
1.271217
ACGGCTAGGGTCAAACTTTCC
60.271
52.381
0.00
0.00
0.00
3.13
1989
1990
4.820173
GTGCTTACTAAGGGACAACAACTT
59.180
41.667
0.00
0.00
0.00
2.66
1999
2000
3.488553
GGGACAACAACTTGAGTTTTCCG
60.489
47.826
0.00
0.00
43.45
4.30
2010
2011
2.218603
GAGTTTTCCGAAGAGTTGCCA
58.781
47.619
0.00
0.00
0.00
4.92
2034
2035
8.950210
CCATACATGGTAAATATTGATCTGTCC
58.050
37.037
0.00
0.00
43.05
4.02
2042
2043
6.446781
AAATATTGATCTGTCCTGCAACAG
57.553
37.500
11.61
11.61
46.54
3.16
2044
2045
2.936919
TGATCTGTCCTGCAACAGTT
57.063
45.000
16.22
9.56
45.57
3.16
2049
2050
1.003545
CTGTCCTGCAACAGTTTGACG
60.004
52.381
9.92
0.00
41.43
4.35
2114
2115
5.113502
AGCTTGAACTTTTCTTGGAATCG
57.886
39.130
0.00
0.00
0.00
3.34
2120
2121
5.466728
TGAACTTTTCTTGGAATCGTCTGAG
59.533
40.000
0.00
0.00
0.00
3.35
2133
2134
0.461961
GTCTGAGTGGGAGGATTCCG
59.538
60.000
0.00
0.00
45.04
4.30
2145
2146
4.202472
GGGAGGATTCCGAAGAATATTGGT
60.202
45.833
0.00
0.00
42.93
3.67
2153
2154
5.667466
TCCGAAGAATATTGGTAACCTCAC
58.333
41.667
0.00
0.00
0.00
3.51
2154
2155
5.424252
TCCGAAGAATATTGGTAACCTCACT
59.576
40.000
0.00
0.00
0.00
3.41
2178
2179
1.144093
CTCGAGTCCCTGGACCTATCT
59.856
57.143
12.66
0.00
45.59
1.98
2188
2189
4.145807
CCTGGACCTATCTCATAACGAGT
58.854
47.826
0.00
0.00
42.88
4.18
2252
2253
1.537202
GAGCCGCTTCAACTTGTCATT
59.463
47.619
0.00
0.00
0.00
2.57
2265
2266
8.099364
TCAACTTGTCATTTAACAATCTCTCC
57.901
34.615
0.00
0.00
38.41
3.71
2279
2280
1.564818
TCTCTCCGGACAGATACCAGT
59.435
52.381
5.17
0.00
0.00
4.00
2290
2291
4.884961
ACAGATACCAGTAGGGAATCAGT
58.115
43.478
0.00
0.00
41.15
3.41
2297
2298
2.026822
CAGTAGGGAATCAGTTGCAGGT
60.027
50.000
0.00
0.00
0.00
4.00
2309
2310
2.512515
GCAGGTGCTCGATGACCC
60.513
66.667
8.94
0.00
38.21
4.46
2311
2312
1.296392
CAGGTGCTCGATGACCCAA
59.704
57.895
8.94
0.00
32.03
4.12
2328
2329
5.044476
TGACCCAACATCCAGTTATATTGGT
60.044
40.000
0.00
0.00
38.74
3.67
2363
2364
0.035915
GGGCCTCCACTCTTGAAGAC
60.036
60.000
0.84
0.00
0.00
3.01
2367
2368
2.224402
GCCTCCACTCTTGAAGACTTGT
60.224
50.000
0.00
0.00
0.00
3.16
2373
2374
4.443457
CCACTCTTGAAGACTTGTTCTCCA
60.443
45.833
0.00
0.00
31.02
3.86
2377
2378
6.830838
ACTCTTGAAGACTTGTTCTCCAAATT
59.169
34.615
0.00
0.00
26.24
1.82
2384
2385
6.564328
AGACTTGTTCTCCAAATTCAACAAC
58.436
36.000
0.00
0.00
34.56
3.32
2387
2388
6.589907
ACTTGTTCTCCAAATTCAACAACAAC
59.410
34.615
0.00
0.00
34.56
3.32
2397
2398
0.958822
CAACAACAACTACCCCAGCC
59.041
55.000
0.00
0.00
0.00
4.85
2399
2400
0.553819
ACAACAACTACCCCAGCCAA
59.446
50.000
0.00
0.00
0.00
4.52
2410
2411
3.909587
CCAGCCAAAGATGATGGGA
57.090
52.632
0.00
0.00
38.44
4.37
2427
2428
2.158914
TGGGAATCATCACGATGGAGTG
60.159
50.000
7.17
0.00
43.11
3.51
2429
2430
2.103094
GGAATCATCACGATGGAGTGGA
59.897
50.000
7.17
0.00
42.10
4.02
2454
2455
3.181465
CGTCCATCTACCTAAGCATGGTT
60.181
47.826
15.47
15.47
38.88
3.67
2505
2506
5.266242
GTCTTCTGTGTCATGTTGTTCAAC
58.734
41.667
8.52
8.52
0.00
3.18
2538
2539
1.445871
ACGCCTATTTCCGTTTCACC
58.554
50.000
0.00
0.00
33.26
4.02
2565
2566
3.535280
ATGTACCACATGATGTGCGTA
57.465
42.857
19.69
18.22
46.51
4.42
2570
2571
6.188859
TGTACCACATGATGTGCGTACATAC
61.189
44.000
32.31
21.47
46.84
2.39
2594
2595
1.228552
TTGCCTGGAACCTCCTTGC
60.229
57.895
0.00
0.00
37.46
4.01
2608
2609
0.253044
CCTTGCGAGGAAGGGATGAA
59.747
55.000
15.76
0.00
46.74
2.57
2611
2612
3.433598
CCTTGCGAGGAAGGGATGAATAA
60.434
47.826
15.76
0.00
46.74
1.40
2631
2632
9.131791
TGAATAATTTTAGATAAGGTGAAGGGC
57.868
33.333
0.00
0.00
0.00
5.19
2632
2633
8.478775
AATAATTTTAGATAAGGTGAAGGGCC
57.521
34.615
0.00
0.00
0.00
5.80
2645
2646
2.223876
TGAAGGGCCGATATACAACGAC
60.224
50.000
0.00
0.00
0.00
4.34
2708
2709
6.523546
CAGTACTTCGAGTGTGTATGTAACTG
59.476
42.308
0.00
4.13
0.00
3.16
2734
2735
0.544223
TCCATTCATACGGGTGGTGG
59.456
55.000
0.00
0.00
33.47
4.61
2805
2806
5.522460
GCTACATAAATAAGGTCTGTTCGCA
59.478
40.000
0.00
0.00
0.00
5.10
2807
2808
5.242434
ACATAAATAAGGTCTGTTCGCACA
58.758
37.500
0.00
0.00
0.00
4.57
2827
2828
6.425504
GCACACTCATGAATAAATACTGAGC
58.574
40.000
0.00
0.00
37.45
4.26
2878
2879
3.809832
GGATGTAAACCGACCTGATGATG
59.190
47.826
0.00
0.00
0.00
3.07
3048
3051
3.050619
CCTACGAGCGCTTAAATGGTAG
58.949
50.000
13.26
15.25
0.00
3.18
3113
3119
2.554142
CGCATCCTCAATCAGCAAGTA
58.446
47.619
0.00
0.00
0.00
2.24
3117
3123
5.545588
GCATCCTCAATCAGCAAGTATCTA
58.454
41.667
0.00
0.00
0.00
1.98
3209
3215
3.581101
TGCTGGTTATCTAGATGGCTCT
58.419
45.455
15.79
0.00
35.39
4.09
3233
3240
0.618981
AGGGACGGAGAAAACCATCC
59.381
55.000
0.00
0.00
41.02
3.51
3266
3273
1.925972
GGGGGAAGTCAGGAAGCCT
60.926
63.158
0.00
0.00
0.00
4.58
3272
3279
2.421619
GAAGTCAGGAAGCCTTCACTG
58.578
52.381
6.80
10.95
35.71
3.66
3329
3336
4.181578
CAAGTTCTGGGGTACGTATTCAG
58.818
47.826
0.00
7.42
0.00
3.02
3365
3372
0.249911
GTGTTGACTCAGGTCGCCTT
60.250
55.000
0.00
0.00
44.83
4.35
3379
3404
2.700773
GCCTTACTTTGGGCAGCCG
61.701
63.158
5.00
0.00
46.84
5.52
3412
3437
2.713895
TTCTTCTCAGTCTCGTGCTG
57.286
50.000
3.51
3.51
35.43
4.41
3447
3472
3.973305
TCAGGATGGCTATGTCCAACATA
59.027
43.478
0.00
0.31
39.96
2.29
3454
3479
6.656632
TGGCTATGTCCAACATAAACAAAA
57.343
33.333
1.82
0.00
40.23
2.44
3467
3492
9.912634
CAACATAAACAAAAGGAATATGTCTGT
57.087
29.630
0.00
0.00
36.47
3.41
3488
3513
6.942005
TCTGTTGCAGATTATTTCTCCAAGAA
59.058
34.615
0.00
0.00
32.71
2.52
3494
3519
6.601217
GCAGATTATTTCTCCAAGAAGAAGGT
59.399
38.462
0.00
0.00
35.37
3.50
3521
3546
3.464207
ATGACATGCATCTGTCGCA
57.536
47.368
14.14
1.01
46.89
5.10
3531
3556
5.871465
TGCATCTGTCGCATAGTTTTAAA
57.129
34.783
0.00
0.00
33.55
1.52
3532
3557
6.435430
TGCATCTGTCGCATAGTTTTAAAT
57.565
33.333
0.00
0.00
33.55
1.40
3533
3558
7.546778
TGCATCTGTCGCATAGTTTTAAATA
57.453
32.000
0.00
0.00
33.55
1.40
3534
3559
7.630026
TGCATCTGTCGCATAGTTTTAAATAG
58.370
34.615
0.00
0.00
33.55
1.73
3535
3560
6.575201
GCATCTGTCGCATAGTTTTAAATAGC
59.425
38.462
0.00
0.00
0.00
2.97
3536
3561
6.598753
TCTGTCGCATAGTTTTAAATAGCC
57.401
37.500
0.00
0.00
0.00
3.93
3537
3562
5.233476
TCTGTCGCATAGTTTTAAATAGCCG
59.767
40.000
0.00
0.00
0.00
5.52
3538
3563
4.271533
TGTCGCATAGTTTTAAATAGCCGG
59.728
41.667
0.00
0.00
0.00
6.13
3539
3564
3.249080
TCGCATAGTTTTAAATAGCCGGC
59.751
43.478
21.89
21.89
0.00
6.13
3540
3565
3.250040
CGCATAGTTTTAAATAGCCGGCT
59.750
43.478
34.85
34.85
0.00
5.52
3541
3566
4.449743
CGCATAGTTTTAAATAGCCGGCTA
59.550
41.667
36.88
36.88
0.00
3.93
3542
3567
5.121768
CGCATAGTTTTAAATAGCCGGCTAT
59.878
40.000
37.79
37.79
40.63
2.97
3543
3568
6.311935
CGCATAGTTTTAAATAGCCGGCTATA
59.688
38.462
41.53
28.18
38.20
1.31
3544
3569
7.148540
CGCATAGTTTTAAATAGCCGGCTATAA
60.149
37.037
41.53
31.52
38.20
0.98
3545
3570
7.961283
GCATAGTTTTAAATAGCCGGCTATAAC
59.039
37.037
41.53
36.86
38.20
1.89
3546
3571
6.872628
AGTTTTAAATAGCCGGCTATAACC
57.127
37.500
41.53
27.04
38.20
2.85
3547
3572
5.766670
AGTTTTAAATAGCCGGCTATAACCC
59.233
40.000
41.53
27.50
38.20
4.11
3548
3573
2.873094
AAATAGCCGGCTATAACCCC
57.127
50.000
41.53
5.55
38.20
4.95
3549
3574
0.611714
AATAGCCGGCTATAACCCCG
59.388
55.000
41.53
0.00
43.97
5.73
3550
3575
1.896122
ATAGCCGGCTATAACCCCGC
61.896
60.000
41.03
5.41
43.05
6.13
3551
3576
3.937447
GCCGGCTATAACCCCGCT
61.937
66.667
22.15
0.00
43.05
5.52
3552
3577
2.576832
GCCGGCTATAACCCCGCTA
61.577
63.158
22.15
0.00
43.05
4.26
3553
3578
2.051941
CCGGCTATAACCCCGCTAA
58.948
57.895
0.00
0.00
43.05
3.09
3554
3579
0.037605
CCGGCTATAACCCCGCTAAG
60.038
60.000
0.00
0.00
43.05
2.18
3555
3580
0.677842
CGGCTATAACCCCGCTAAGT
59.322
55.000
0.00
0.00
37.85
2.24
3556
3581
1.604693
CGGCTATAACCCCGCTAAGTG
60.605
57.143
0.00
0.00
37.85
3.16
3557
3582
1.270678
GGCTATAACCCCGCTAAGTGG
60.271
57.143
0.00
0.00
0.00
4.00
3558
3583
1.415289
GCTATAACCCCGCTAAGTGGT
59.585
52.381
0.00
0.00
0.00
4.16
3559
3584
2.547430
GCTATAACCCCGCTAAGTGGTC
60.547
54.545
0.00
0.00
0.00
4.02
3560
3585
1.875488
ATAACCCCGCTAAGTGGTCT
58.125
50.000
0.00
0.00
0.00
3.85
3561
3586
1.188863
TAACCCCGCTAAGTGGTCTC
58.811
55.000
0.00
0.00
0.00
3.36
3562
3587
0.834687
AACCCCGCTAAGTGGTCTCA
60.835
55.000
0.00
0.00
0.00
3.27
3563
3588
0.617820
ACCCCGCTAAGTGGTCTCAT
60.618
55.000
0.00
0.00
0.00
2.90
3564
3589
0.179073
CCCCGCTAAGTGGTCTCATG
60.179
60.000
0.00
0.00
0.00
3.07
3565
3590
0.811616
CCCGCTAAGTGGTCTCATGC
60.812
60.000
0.00
0.00
0.00
4.06
3566
3591
0.108186
CCGCTAAGTGGTCTCATGCA
60.108
55.000
0.00
0.00
0.00
3.96
3567
3592
1.002366
CGCTAAGTGGTCTCATGCAC
58.998
55.000
0.00
0.00
0.00
4.57
3568
3593
1.672737
CGCTAAGTGGTCTCATGCACA
60.673
52.381
0.00
0.00
0.00
4.57
3569
3594
2.426522
GCTAAGTGGTCTCATGCACAA
58.573
47.619
0.00
0.00
0.00
3.33
3570
3595
2.813754
GCTAAGTGGTCTCATGCACAAA
59.186
45.455
0.00
0.00
0.00
2.83
3571
3596
3.441572
GCTAAGTGGTCTCATGCACAAAT
59.558
43.478
0.00
0.00
0.00
2.32
3572
3597
3.928727
AAGTGGTCTCATGCACAAATG
57.071
42.857
0.00
0.00
0.00
2.32
3573
3598
2.165167
AGTGGTCTCATGCACAAATGG
58.835
47.619
0.00
0.00
0.00
3.16
3574
3599
2.161855
GTGGTCTCATGCACAAATGGA
58.838
47.619
0.00
0.00
0.00
3.41
3575
3600
2.095059
GTGGTCTCATGCACAAATGGAC
60.095
50.000
0.00
0.00
31.94
4.02
3576
3601
2.224843
TGGTCTCATGCACAAATGGACT
60.225
45.455
0.00
0.00
32.67
3.85
3577
3602
3.008923
TGGTCTCATGCACAAATGGACTA
59.991
43.478
0.00
0.00
32.67
2.59
3578
3603
3.624861
GGTCTCATGCACAAATGGACTAG
59.375
47.826
0.00
0.00
32.67
2.57
3579
3604
3.064545
GTCTCATGCACAAATGGACTAGC
59.935
47.826
0.00
0.00
30.96
3.42
3580
3605
3.054875
TCTCATGCACAAATGGACTAGCT
60.055
43.478
0.00
0.00
0.00
3.32
3581
3606
3.011818
TCATGCACAAATGGACTAGCTG
58.988
45.455
0.00
0.00
0.00
4.24
3582
3607
2.857186
TGCACAAATGGACTAGCTGA
57.143
45.000
0.00
0.00
0.00
4.26
3583
3608
3.354948
TGCACAAATGGACTAGCTGAT
57.645
42.857
0.00
0.00
0.00
2.90
3584
3609
3.689347
TGCACAAATGGACTAGCTGATT
58.311
40.909
0.00
0.00
0.00
2.57
3585
3610
4.081406
TGCACAAATGGACTAGCTGATTT
58.919
39.130
0.00
0.00
0.00
2.17
3586
3611
4.082625
TGCACAAATGGACTAGCTGATTTG
60.083
41.667
14.74
14.74
40.24
2.32
3587
3612
4.156556
GCACAAATGGACTAGCTGATTTGA
59.843
41.667
19.90
0.00
37.80
2.69
3588
3613
5.335897
GCACAAATGGACTAGCTGATTTGAA
60.336
40.000
19.90
0.00
37.80
2.69
3589
3614
6.320171
CACAAATGGACTAGCTGATTTGAAG
58.680
40.000
19.90
12.02
37.80
3.02
3590
3615
5.416952
ACAAATGGACTAGCTGATTTGAAGG
59.583
40.000
19.90
3.01
37.80
3.46
3591
3616
4.851639
ATGGACTAGCTGATTTGAAGGT
57.148
40.909
0.00
0.00
0.00
3.50
3592
3617
4.207891
TGGACTAGCTGATTTGAAGGTC
57.792
45.455
0.00
0.00
0.00
3.85
3593
3618
3.055094
TGGACTAGCTGATTTGAAGGTCC
60.055
47.826
0.00
0.00
41.39
4.46
3594
3619
3.190874
GACTAGCTGATTTGAAGGTCCG
58.809
50.000
0.00
0.00
0.00
4.79
3595
3620
1.936547
CTAGCTGATTTGAAGGTCCGC
59.063
52.381
0.00
0.00
0.00
5.54
3596
3621
0.678048
AGCTGATTTGAAGGTCCGCC
60.678
55.000
0.00
0.00
0.00
6.13
3597
3622
1.982073
GCTGATTTGAAGGTCCGCCG
61.982
60.000
0.00
0.00
40.50
6.46
3598
3623
1.982073
CTGATTTGAAGGTCCGCCGC
61.982
60.000
0.00
0.00
40.50
6.53
3599
3624
1.745489
GATTTGAAGGTCCGCCGCT
60.745
57.895
0.00
0.00
40.50
5.52
3600
3625
0.461339
GATTTGAAGGTCCGCCGCTA
60.461
55.000
0.00
0.00
40.50
4.26
3601
3626
0.180406
ATTTGAAGGTCCGCCGCTAT
59.820
50.000
0.00
0.00
40.50
2.97
3602
3627
0.035820
TTTGAAGGTCCGCCGCTATT
60.036
50.000
0.00
0.00
40.50
1.73
3603
3628
0.035820
TTGAAGGTCCGCCGCTATTT
60.036
50.000
0.00
0.00
40.50
1.40
3604
3629
0.825410
TGAAGGTCCGCCGCTATTTA
59.175
50.000
0.00
0.00
40.50
1.40
3605
3630
1.202486
TGAAGGTCCGCCGCTATTTAG
60.202
52.381
0.00
0.00
40.50
1.85
3606
3631
0.532196
AAGGTCCGCCGCTATTTAGC
60.532
55.000
0.00
0.00
45.62
3.09
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
0
1
2.233431
AGCTACTGAGGTTGAGCTTGAG
59.767
50.000
0.00
0.00
42.59
3.02
5
6
0.036952
TGCAGCTACTGAGGTTGAGC
60.037
55.000
0.00
0.00
32.44
4.26
18
19
1.310933
CCGAATTCTTGGCTGCAGCT
61.311
55.000
35.82
16.47
41.70
4.24
24
25
1.021390
CGCACTCCGAATTCTTGGCT
61.021
55.000
3.52
0.00
40.02
4.75
27
28
1.391485
CACTCGCACTCCGAATTCTTG
59.609
52.381
3.52
0.00
46.81
3.02
29
30
0.108615
CCACTCGCACTCCGAATTCT
60.109
55.000
3.52
0.00
46.81
2.40
33
34
2.599281
TCCCACTCGCACTCCGAA
60.599
61.111
0.00
0.00
46.81
4.30
34
35
3.062466
CTCCCACTCGCACTCCGA
61.062
66.667
0.00
0.00
45.15
4.55
35
36
4.135153
CCTCCCACTCGCACTCCG
62.135
72.222
0.00
0.00
38.61
4.63
36
37
2.997897
ACCTCCCACTCGCACTCC
60.998
66.667
0.00
0.00
0.00
3.85
37
38
2.219325
CTCACCTCCCACTCGCACTC
62.219
65.000
0.00
0.00
0.00
3.51
38
39
2.203640
TCACCTCCCACTCGCACT
60.204
61.111
0.00
0.00
0.00
4.40
39
40
1.608717
ATCTCACCTCCCACTCGCAC
61.609
60.000
0.00
0.00
0.00
5.34
40
41
1.305297
ATCTCACCTCCCACTCGCA
60.305
57.895
0.00
0.00
0.00
5.10
56
57
2.158885
GGTAGTCAAAGAGGGGCTGATC
60.159
54.545
0.00
0.00
0.00
2.92
75
76
4.307032
AATACCTCAAGTGATGCAAGGT
57.693
40.909
8.91
8.91
0.00
3.50
80
81
6.818644
TCAAGTCTAAATACCTCAAGTGATGC
59.181
38.462
0.00
0.00
0.00
3.91
83
84
6.211584
AGCTCAAGTCTAAATACCTCAAGTGA
59.788
38.462
0.00
0.00
0.00
3.41
91
92
3.311048
GCTGCAGCTCAAGTCTAAATACC
59.689
47.826
31.33
0.00
38.21
2.73
112
113
1.071699
TCTGTACCCCACTGAAGTTGC
59.928
52.381
0.00
0.00
32.68
4.17
142
143
8.138074
GCTGAAGACTTTTAAGAGAACCAATTT
58.862
33.333
0.00
0.00
0.00
1.82
143
144
7.285401
TGCTGAAGACTTTTAAGAGAACCAATT
59.715
33.333
0.00
0.00
0.00
2.32
144
145
6.772716
TGCTGAAGACTTTTAAGAGAACCAAT
59.227
34.615
0.00
0.00
0.00
3.16
148
149
7.665561
AGATGCTGAAGACTTTTAAGAGAAC
57.334
36.000
0.00
0.00
0.00
3.01
183
184
2.355009
GCCCACAAAGCTTGCACG
60.355
61.111
0.00
0.00
0.00
5.34
184
185
1.300388
CTGCCCACAAAGCTTGCAC
60.300
57.895
0.00
0.00
0.00
4.57
237
238
5.661056
TTGTCCGAGACACTGAGAAATAT
57.339
39.130
6.27
0.00
42.60
1.28
278
279
4.877823
GTGAGATGTGATAACCATGCAAGA
59.122
41.667
0.00
0.00
0.00
3.02
341
342
1.271325
TGCACCCAATCCACTACTGTG
60.271
52.381
0.00
0.00
43.45
3.66
345
346
0.740737
GCATGCACCCAATCCACTAC
59.259
55.000
14.21
0.00
0.00
2.73
346
347
0.330941
TGCATGCACCCAATCCACTA
59.669
50.000
18.46
0.00
0.00
2.74
396
397
3.653344
TGAGATCACTGTCTTCCAAACG
58.347
45.455
0.00
0.00
0.00
3.60
487
488
3.500558
GAGAAAATCCAGCCTGAAAGC
57.499
47.619
0.00
0.00
0.00
3.51
568
569
3.675348
TTTCATCAGGAATGGAGCCAT
57.325
42.857
0.00
0.00
38.46
4.40
572
573
4.174704
TCCCATTTCATCAGGAATGGAG
57.825
45.455
15.48
7.21
36.82
3.86
575
576
6.774170
TCATACTTCCCATTTCATCAGGAATG
59.226
38.462
0.00
0.00
37.74
2.67
731
732
2.765122
CATTTTGGCAACCGTTCCATT
58.235
42.857
0.00
0.00
31.54
3.16
765
766
3.056393
TCCGAGAAATCCAACACGTACAT
60.056
43.478
0.00
0.00
0.00
2.29
774
775
3.546724
TGTTGTTGTCCGAGAAATCCAA
58.453
40.909
0.00
0.00
0.00
3.53
917
918
9.757227
ACTAGTTGATTAGAATGAAGATGTAGC
57.243
33.333
0.00
0.00
0.00
3.58
920
921
9.388506
CCAACTAGTTGATTAGAATGAAGATGT
57.611
33.333
32.50
0.00
42.93
3.06
972
973
4.103311
AGTTCTTGTAAACTTCTCAGCCCT
59.897
41.667
0.00
0.00
36.02
5.19
1105
1106
0.682209
GATTGCCACCTGAGCCATGT
60.682
55.000
0.00
0.00
0.00
3.21
1119
1120
5.798934
GTCAATGAGTTGAATGTCAGATTGC
59.201
40.000
0.00
0.00
45.38
3.56
1135
1136
4.447054
GGACGCATTAGAGATGTCAATGAG
59.553
45.833
14.76
13.84
36.10
2.90
1263
1264
3.529533
CATTCTCTCTGCTTCCATCGTT
58.470
45.455
0.00
0.00
0.00
3.85
1270
1271
4.161377
ACTTAGGTCCATTCTCTCTGCTTC
59.839
45.833
0.00
0.00
0.00
3.86
1294
1295
9.049050
TGGGACTGTACCAGTAAATCTATTAAA
57.951
33.333
7.92
0.00
45.44
1.52
1295
1296
8.612486
TGGGACTGTACCAGTAAATCTATTAA
57.388
34.615
7.92
0.00
45.44
1.40
1312
1313
3.790089
CCTAGGAAACTTTGGGACTGT
57.210
47.619
1.05
0.00
43.67
3.55
1390
1391
0.106894
GATAACTCCGGGGCTTCCAG
59.893
60.000
0.00
0.00
34.36
3.86
1391
1392
0.326238
AGATAACTCCGGGGCTTCCA
60.326
55.000
0.00
0.00
34.36
3.53
1400
1401
1.929836
GAGCAAGCACAGATAACTCCG
59.070
52.381
0.00
0.00
0.00
4.63
1437
1438
3.270027
CGAAGATGGTATGTTGCCAGAA
58.730
45.455
0.00
0.00
39.65
3.02
1485
1486
6.291377
TGTCAGCATATTTCCTGATAAGTCC
58.709
40.000
0.00
0.00
39.95
3.85
1489
1490
6.327365
TCTCCTGTCAGCATATTTCCTGATAA
59.673
38.462
0.00
0.00
39.95
1.75
1523
1524
0.924823
AAGATCTCCCTGCTGGCAAT
59.075
50.000
3.63
0.00
0.00
3.56
1605
1606
6.436843
TCTTTTGACCTTTGAAGAACTGAC
57.563
37.500
0.00
0.00
0.00
3.51
1681
1682
6.012858
AGGGATGTCATGTTTTCTACTAACCA
60.013
38.462
0.00
0.00
0.00
3.67
1806
1807
6.100424
AGGATTCAGGTATACCTCCAGAAAAG
59.900
42.308
22.09
8.28
46.65
2.27
1925
1926
3.370209
GGAAAGTTTGACCCTAGCCGTAT
60.370
47.826
0.00
0.00
0.00
3.06
1929
1930
2.881111
AGGAAAGTTTGACCCTAGCC
57.119
50.000
0.00
0.00
0.00
3.93
1947
1948
3.787476
GCACGGACAAAGTTGTTGTGTAG
60.787
47.826
21.43
6.95
43.60
2.74
1989
1990
2.218603
GGCAACTCTTCGGAAAACTCA
58.781
47.619
0.00
0.00
0.00
3.41
2010
2011
9.730705
CAGGACAGATCAATATTTACCATGTAT
57.269
33.333
0.00
0.00
0.00
2.29
2031
2032
0.307760
CCGTCAAACTGTTGCAGGAC
59.692
55.000
0.00
0.00
35.51
3.85
2034
2035
0.588252
CTCCCGTCAAACTGTTGCAG
59.412
55.000
0.00
0.00
37.52
4.41
2061
2062
6.824553
AGCAATCAGAGCACTAAATCTATCA
58.175
36.000
0.00
0.00
0.00
2.15
2064
2065
7.105588
TCAAAGCAATCAGAGCACTAAATCTA
58.894
34.615
0.00
0.00
0.00
1.98
2065
2066
5.942236
TCAAAGCAATCAGAGCACTAAATCT
59.058
36.000
0.00
0.00
0.00
2.40
2067
2068
6.579666
TTCAAAGCAATCAGAGCACTAAAT
57.420
33.333
0.00
0.00
0.00
1.40
2068
2069
6.389830
TTTCAAAGCAATCAGAGCACTAAA
57.610
33.333
0.00
0.00
0.00
1.85
2114
2115
0.461961
CGGAATCCTCCCACTCAGAC
59.538
60.000
0.00
0.00
38.71
3.51
2120
2121
4.625607
ATATTCTTCGGAATCCTCCCAC
57.374
45.455
0.00
0.00
42.93
4.61
2133
2134
5.880332
TGCAGTGAGGTTACCAATATTCTTC
59.120
40.000
3.51
0.00
0.00
2.87
2145
2146
1.540267
GACTCGAGTGCAGTGAGGTTA
59.460
52.381
25.58
0.00
34.03
2.85
2153
2154
1.979155
TCCAGGGACTCGAGTGCAG
60.979
63.158
33.73
25.30
38.19
4.41
2154
2155
2.117423
TCCAGGGACTCGAGTGCA
59.883
61.111
33.73
14.44
38.19
4.57
2178
2179
5.462530
TTTCTCCAGACAACTCGTTATGA
57.537
39.130
0.00
0.00
0.00
2.15
2188
2189
4.655963
CTTGAAGGGATTTCTCCAGACAA
58.344
43.478
0.00
0.00
44.08
3.18
2252
2253
5.068723
GGTATCTGTCCGGAGAGATTGTTAA
59.931
44.000
39.60
23.91
41.12
2.01
2265
2266
2.359981
TCCCTACTGGTATCTGTCCG
57.640
55.000
0.00
0.00
34.77
4.79
2279
2280
1.340017
GCACCTGCAACTGATTCCCTA
60.340
52.381
0.00
0.00
41.59
3.53
2290
2291
1.375908
GGTCATCGAGCACCTGCAA
60.376
57.895
8.09
0.00
45.16
4.08
2297
2298
0.107703
GGATGTTGGGTCATCGAGCA
60.108
55.000
0.00
0.00
43.39
4.26
2309
2310
9.734620
CAATGTTACCAATATAACTGGATGTTG
57.265
33.333
10.45
5.36
39.55
3.33
2311
2312
8.058847
ACCAATGTTACCAATATAACTGGATGT
58.941
33.333
10.45
0.00
35.45
3.06
2328
2329
4.020543
GAGGCCCACATAAACCAATGTTA
58.979
43.478
0.00
0.00
38.01
2.41
2363
2364
6.813152
AGTTGTTGTTGAATTTGGAGAACAAG
59.187
34.615
10.32
0.00
40.82
3.16
2367
2368
6.183360
GGGTAGTTGTTGTTGAATTTGGAGAA
60.183
38.462
0.00
0.00
0.00
2.87
2373
2374
4.202212
GCTGGGGTAGTTGTTGTTGAATTT
60.202
41.667
0.00
0.00
0.00
1.82
2377
2378
1.477923
GGCTGGGGTAGTTGTTGTTGA
60.478
52.381
0.00
0.00
0.00
3.18
2384
2385
2.094675
CATCTTTGGCTGGGGTAGTTG
58.905
52.381
0.00
0.00
0.00
3.16
2387
2388
2.579873
CATCATCTTTGGCTGGGGTAG
58.420
52.381
0.00
0.00
0.00
3.18
2410
2411
3.033909
TCTCCACTCCATCGTGATGATT
58.966
45.455
11.35
0.00
41.20
2.57
2419
2420
2.579878
TGGACGTCTCCACTCCATC
58.420
57.895
16.46
0.00
42.15
3.51
2427
2428
2.293955
GCTTAGGTAGATGGACGTCTCC
59.706
54.545
16.46
0.00
37.04
3.71
2429
2430
3.014304
TGCTTAGGTAGATGGACGTCT
57.986
47.619
16.46
0.00
0.00
4.18
2445
2446
1.485895
ACAAAGCCAACAACCATGCTT
59.514
42.857
0.00
0.00
45.40
3.91
2454
2455
1.452145
GGCCGAAGACAAAGCCAACA
61.452
55.000
0.00
0.00
45.07
3.33
2505
2506
5.398603
AATAGGCGTATCTCCATCTCTTG
57.601
43.478
0.00
0.00
0.00
3.02
2565
2566
3.258123
GGTTCCAGGCAACAATTGTATGT
59.742
43.478
12.39
0.00
41.41
2.29
2570
2571
1.273327
GGAGGTTCCAGGCAACAATTG
59.727
52.381
3.24
3.24
36.28
2.32
2575
2576
1.527433
GCAAGGAGGTTCCAGGCAAC
61.527
60.000
0.00
0.00
39.61
4.17
2594
2595
8.854614
ATCTAAAATTATTCATCCCTTCCTCG
57.145
34.615
0.00
0.00
0.00
4.63
2608
2609
6.715264
CGGCCCTTCACCTTATCTAAAATTAT
59.285
38.462
0.00
0.00
0.00
1.28
2611
2612
4.165372
TCGGCCCTTCACCTTATCTAAAAT
59.835
41.667
0.00
0.00
0.00
1.82
2621
2622
2.097110
TGTATATCGGCCCTTCACCT
57.903
50.000
0.00
0.00
0.00
4.00
2622
2623
2.490991
GTTGTATATCGGCCCTTCACC
58.509
52.381
0.00
0.00
0.00
4.02
2631
2632
3.003068
AGGAGAACGTCGTTGTATATCGG
59.997
47.826
16.75
0.00
0.00
4.18
2632
2633
4.206698
AGGAGAACGTCGTTGTATATCG
57.793
45.455
16.75
0.00
0.00
2.92
2645
2646
0.531532
CCCAGCTGCATAGGAGAACG
60.532
60.000
8.66
0.00
0.00
3.95
2708
2709
2.146342
CCCGTATGAATGGAGATGCAC
58.854
52.381
0.00
0.00
33.01
4.57
2805
2806
7.334090
ACAGCTCAGTATTTATTCATGAGTGT
58.666
34.615
0.13
0.00
39.63
3.55
2807
2808
7.655328
GCTACAGCTCAGTATTTATTCATGAGT
59.345
37.037
0.00
0.00
39.63
3.41
2827
2828
9.760660
GACAAATTTGTATTCTTACAGCTACAG
57.239
33.333
23.33
0.00
42.43
2.74
2849
2850
3.008594
AGGTCGGTTTACATCCATGACAA
59.991
43.478
0.00
0.00
0.00
3.18
2850
2851
2.569853
AGGTCGGTTTACATCCATGACA
59.430
45.455
0.00
0.00
0.00
3.58
2878
2879
1.971481
AACCACCACCGAACCTTTAC
58.029
50.000
0.00
0.00
0.00
2.01
3048
3051
1.956629
TACGGGCTAACAGGCTCTGC
61.957
60.000
2.50
0.00
41.09
4.26
3113
3119
4.569943
TCTCGCTTGTGAGCTTTTTAGAT
58.430
39.130
6.34
0.00
46.96
1.98
3117
3123
4.202050
ACAATTCTCGCTTGTGAGCTTTTT
60.202
37.500
6.34
0.00
46.96
1.94
3131
3137
1.428448
TCCGCAAGACACAATTCTCG
58.572
50.000
0.00
0.00
43.02
4.04
3158
3164
0.456628
CATGAATTGGCGGCATGACA
59.543
50.000
14.32
13.37
41.35
3.58
3209
3215
1.346722
GGTTTTCTCCGTCCCTGAAGA
59.653
52.381
0.00
0.00
0.00
2.87
3296
3303
3.503748
CCCCAGAACTTGTTGATCTTGAC
59.496
47.826
0.00
0.00
0.00
3.18
3329
3336
1.700186
ACACTTCCTTGGAGAGGGAAC
59.300
52.381
7.68
0.00
46.31
3.62
3365
3372
2.047655
CGACGGCTGCCCAAAGTA
60.048
61.111
14.12
0.00
0.00
2.24
3447
3472
6.815089
TGCAACAGACATATTCCTTTTGTTT
58.185
32.000
0.00
0.00
0.00
2.83
3454
3479
8.757982
AAATAATCTGCAACAGACATATTCCT
57.242
30.769
13.54
2.85
43.63
3.36
3516
3541
4.769215
CCGGCTATTTAAAACTATGCGAC
58.231
43.478
0.00
0.00
0.00
5.19
3517
3542
3.249080
GCCGGCTATTTAAAACTATGCGA
59.751
43.478
22.15
0.00
0.00
5.10
3518
3543
3.250040
AGCCGGCTATTTAAAACTATGCG
59.750
43.478
31.86
0.00
0.00
4.73
3519
3544
4.830826
AGCCGGCTATTTAAAACTATGC
57.169
40.909
31.86
0.00
0.00
3.14
3520
3545
8.448615
GGTTATAGCCGGCTATTTAAAACTATG
58.551
37.037
44.65
0.00
39.65
2.23
3521
3546
7.609146
GGGTTATAGCCGGCTATTTAAAACTAT
59.391
37.037
44.65
26.21
39.65
2.12
3522
3547
6.936335
GGGTTATAGCCGGCTATTTAAAACTA
59.064
38.462
44.65
26.55
39.65
2.24
3523
3548
5.766670
GGGTTATAGCCGGCTATTTAAAACT
59.233
40.000
44.65
26.62
39.65
2.66
3524
3549
5.048504
GGGGTTATAGCCGGCTATTTAAAAC
60.049
44.000
44.65
38.01
39.65
2.43
3525
3550
5.072055
GGGGTTATAGCCGGCTATTTAAAA
58.928
41.667
44.65
32.18
39.65
1.52
3526
3551
4.654915
GGGGTTATAGCCGGCTATTTAAA
58.345
43.478
44.65
32.50
39.65
1.52
3527
3552
3.306919
CGGGGTTATAGCCGGCTATTTAA
60.307
47.826
44.65
33.14
39.65
1.52
3528
3553
2.234414
CGGGGTTATAGCCGGCTATTTA
59.766
50.000
44.65
31.98
39.65
1.40
3529
3554
1.002773
CGGGGTTATAGCCGGCTATTT
59.997
52.381
44.65
30.05
39.65
1.40
3530
3555
0.611714
CGGGGTTATAGCCGGCTATT
59.388
55.000
44.65
30.54
39.65
1.73
3531
3556
2.283824
CGGGGTTATAGCCGGCTAT
58.716
57.895
42.09
42.09
41.58
2.97
3532
3557
3.781760
CGGGGTTATAGCCGGCTA
58.218
61.111
36.88
36.88
36.39
3.93
3535
3560
0.037605
CTTAGCGGGGTTATAGCCGG
60.038
60.000
0.00
0.00
36.39
6.13
3536
3561
0.677842
ACTTAGCGGGGTTATAGCCG
59.322
55.000
0.00
0.00
36.39
5.52
3537
3562
1.270678
CCACTTAGCGGGGTTATAGCC
60.271
57.143
0.00
0.00
34.31
3.93
3538
3563
1.415289
ACCACTTAGCGGGGTTATAGC
59.585
52.381
0.00
0.00
0.00
2.97
3539
3564
2.963782
AGACCACTTAGCGGGGTTATAG
59.036
50.000
0.00
0.00
34.39
1.31
3540
3565
2.961062
GAGACCACTTAGCGGGGTTATA
59.039
50.000
0.00
0.00
34.39
0.98
3541
3566
1.761198
GAGACCACTTAGCGGGGTTAT
59.239
52.381
0.00
0.00
34.39
1.89
3542
3567
1.188863
GAGACCACTTAGCGGGGTTA
58.811
55.000
0.00
0.00
34.39
2.85
3543
3568
0.834687
TGAGACCACTTAGCGGGGTT
60.835
55.000
0.00
0.00
34.39
4.11
3544
3569
0.617820
ATGAGACCACTTAGCGGGGT
60.618
55.000
0.00
0.00
37.70
4.95
3545
3570
0.179073
CATGAGACCACTTAGCGGGG
60.179
60.000
0.00
0.00
0.00
5.73
3546
3571
0.811616
GCATGAGACCACTTAGCGGG
60.812
60.000
0.00
0.00
0.00
6.13
3547
3572
0.108186
TGCATGAGACCACTTAGCGG
60.108
55.000
0.00
0.00
0.00
5.52
3548
3573
1.002366
GTGCATGAGACCACTTAGCG
58.998
55.000
0.00
0.00
0.00
4.26
3549
3574
2.099141
TGTGCATGAGACCACTTAGC
57.901
50.000
0.00
0.00
33.26
3.09
3550
3575
4.142534
CCATTTGTGCATGAGACCACTTAG
60.143
45.833
0.00
0.00
33.26
2.18
3551
3576
3.758023
CCATTTGTGCATGAGACCACTTA
59.242
43.478
0.00
0.00
33.26
2.24
3552
3577
2.559668
CCATTTGTGCATGAGACCACTT
59.440
45.455
0.00
0.00
33.26
3.16
3553
3578
2.165167
CCATTTGTGCATGAGACCACT
58.835
47.619
0.00
0.00
33.26
4.00
3554
3579
2.095059
GTCCATTTGTGCATGAGACCAC
60.095
50.000
0.00
0.00
0.00
4.16
3555
3580
2.161855
GTCCATTTGTGCATGAGACCA
58.838
47.619
0.00
0.00
0.00
4.02
3556
3581
2.440409
AGTCCATTTGTGCATGAGACC
58.560
47.619
0.00
0.00
30.52
3.85
3557
3582
3.064545
GCTAGTCCATTTGTGCATGAGAC
59.935
47.826
0.00
0.00
0.00
3.36
3558
3583
3.054875
AGCTAGTCCATTTGTGCATGAGA
60.055
43.478
0.00
0.00
0.00
3.27
3559
3584
3.064958
CAGCTAGTCCATTTGTGCATGAG
59.935
47.826
0.00
0.00
0.00
2.90
3560
3585
3.011818
CAGCTAGTCCATTTGTGCATGA
58.988
45.455
0.00
0.00
0.00
3.07
3561
3586
3.011818
TCAGCTAGTCCATTTGTGCATG
58.988
45.455
0.00
0.00
0.00
4.06
3562
3587
3.354948
TCAGCTAGTCCATTTGTGCAT
57.645
42.857
0.00
0.00
0.00
3.96
3563
3588
2.857186
TCAGCTAGTCCATTTGTGCA
57.143
45.000
0.00
0.00
0.00
4.57
3564
3589
4.156556
TCAAATCAGCTAGTCCATTTGTGC
59.843
41.667
15.87
0.00
37.46
4.57
3565
3590
5.885230
TCAAATCAGCTAGTCCATTTGTG
57.115
39.130
15.87
1.40
37.46
3.33
3566
3591
5.416952
CCTTCAAATCAGCTAGTCCATTTGT
59.583
40.000
15.87
0.00
37.46
2.83
3567
3592
5.416952
ACCTTCAAATCAGCTAGTCCATTTG
59.583
40.000
12.58
12.58
37.51
2.32
3568
3593
5.574188
ACCTTCAAATCAGCTAGTCCATTT
58.426
37.500
0.00
0.00
0.00
2.32
3569
3594
5.184892
ACCTTCAAATCAGCTAGTCCATT
57.815
39.130
0.00
0.00
0.00
3.16
3570
3595
4.384647
GGACCTTCAAATCAGCTAGTCCAT
60.385
45.833
0.00
0.00
41.73
3.41
3571
3596
3.055094
GGACCTTCAAATCAGCTAGTCCA
60.055
47.826
0.00
0.00
41.73
4.02
3572
3597
3.536570
GGACCTTCAAATCAGCTAGTCC
58.463
50.000
0.00
0.00
36.12
3.85
3573
3598
3.190874
CGGACCTTCAAATCAGCTAGTC
58.809
50.000
0.00
0.00
0.00
2.59
3574
3599
2.678190
GCGGACCTTCAAATCAGCTAGT
60.678
50.000
0.00
0.00
33.80
2.57
3575
3600
1.936547
GCGGACCTTCAAATCAGCTAG
59.063
52.381
0.00
0.00
33.80
3.42
3576
3601
1.406887
GGCGGACCTTCAAATCAGCTA
60.407
52.381
0.00
0.00
36.44
3.32
3577
3602
0.678048
GGCGGACCTTCAAATCAGCT
60.678
55.000
0.00
0.00
36.44
4.24
3578
3603
1.803289
GGCGGACCTTCAAATCAGC
59.197
57.895
0.00
0.00
35.57
4.26
3579
3604
1.982073
GCGGCGGACCTTCAAATCAG
61.982
60.000
9.78
0.00
0.00
2.90
3580
3605
2.038269
GCGGCGGACCTTCAAATCA
61.038
57.895
9.78
0.00
0.00
2.57
3581
3606
0.461339
TAGCGGCGGACCTTCAAATC
60.461
55.000
9.78
0.00
0.00
2.17
3582
3607
0.180406
ATAGCGGCGGACCTTCAAAT
59.820
50.000
9.78
0.00
0.00
2.32
3583
3608
0.035820
AATAGCGGCGGACCTTCAAA
60.036
50.000
9.78
0.00
0.00
2.69
3584
3609
0.035820
AAATAGCGGCGGACCTTCAA
60.036
50.000
9.78
0.00
0.00
2.69
3585
3610
0.825410
TAAATAGCGGCGGACCTTCA
59.175
50.000
9.78
0.00
0.00
3.02
3586
3611
1.499049
CTAAATAGCGGCGGACCTTC
58.501
55.000
9.78
0.00
0.00
3.46
3587
3612
0.532196
GCTAAATAGCGGCGGACCTT
60.532
55.000
9.78
0.00
39.82
3.50
3588
3613
1.069258
GCTAAATAGCGGCGGACCT
59.931
57.895
9.78
0.00
39.82
3.85
3589
3614
3.638971
GCTAAATAGCGGCGGACC
58.361
61.111
9.78
0.00
39.82
4.46
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.