Multiple sequence alignment - TraesCS3B01G029100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G029100 chr3B 100.000 5633 0 0 1 5633 12844097 12838465 0.000000e+00 10403.0
1 TraesCS3B01G029100 chr3B 95.291 4375 141 17 397 4751 12471870 12476199 0.000000e+00 6878.0
2 TraesCS3B01G029100 chr3B 85.583 2178 236 31 928 3048 13245986 13248142 0.000000e+00 2211.0
3 TraesCS3B01G029100 chr3B 84.115 2197 255 40 928 3086 12933370 12935510 0.000000e+00 2037.0
4 TraesCS3B01G029100 chr3B 87.955 1594 153 20 3134 4720 13248157 13249718 0.000000e+00 1844.0
5 TraesCS3B01G029100 chr3B 86.812 1562 182 21 3130 4683 12935484 12937029 0.000000e+00 1722.0
6 TraesCS3B01G029100 chr3B 83.333 1224 169 18 1711 2910 13413561 13414773 0.000000e+00 1098.0
7 TraesCS3B01G029100 chr3B 90.190 316 31 0 4931 5246 778755100 778755415 4.060000e-111 412.0
8 TraesCS3B01G029100 chr3B 87.550 249 14 5 5239 5470 778766042 778766290 7.190000e-69 272.0
9 TraesCS3B01G029100 chr3B 76.864 523 80 21 5006 5506 87723717 87724220 2.010000e-64 257.0
10 TraesCS3B01G029100 chr3B 89.865 148 7 1 4790 4937 12476501 12476362 3.470000e-42 183.0
11 TraesCS3B01G029100 chr3B 95.918 98 4 0 4694 4791 12476201 12476298 5.840000e-35 159.0
12 TraesCS3B01G029100 chr3B 95.699 93 4 0 5536 5628 778766292 778766384 3.520000e-32 150.0
13 TraesCS3B01G029100 chr3D 96.067 4628 134 22 183 4791 41597554 41592956 0.000000e+00 7494.0
14 TraesCS3B01G029100 chr3D 93.878 3953 203 14 804 4732 41427234 41423297 0.000000e+00 5923.0
15 TraesCS3B01G029100 chr3D 84.928 2017 259 19 928 2913 5410272 5408270 0.000000e+00 1999.0
16 TraesCS3B01G029100 chr3D 83.471 2184 275 36 928 3065 5328561 5330704 0.000000e+00 1954.0
17 TraesCS3B01G029100 chr3D 83.109 2155 278 36 973 3063 5376602 5374470 0.000000e+00 1884.0
18 TraesCS3B01G029100 chr3D 85.605 1563 178 27 3149 4678 5374469 5372921 0.000000e+00 1596.0
19 TraesCS3B01G029100 chr3D 84.379 1594 190 34 3130 4683 5408054 5406480 0.000000e+00 1509.0
20 TraesCS3B01G029100 chr3D 84.370 1222 144 30 3150 4340 5330704 5331909 0.000000e+00 1155.0
21 TraesCS3B01G029100 chr3D 92.998 557 35 4 183 738 27670809 27671362 0.000000e+00 809.0
22 TraesCS3B01G029100 chr3D 92.460 557 38 4 183 738 91210146 91210699 0.000000e+00 793.0
23 TraesCS3B01G029100 chr3D 92.844 545 37 2 183 727 316463890 316463348 0.000000e+00 789.0
24 TraesCS3B01G029100 chr3D 93.243 148 9 1 4790 4937 41592746 41592892 3.420000e-52 217.0
25 TraesCS3B01G029100 chr3D 94.340 53 2 1 738 789 41427284 41427232 4.680000e-11 80.5
26 TraesCS3B01G029100 chr3A 96.074 3744 116 8 941 4683 15835605 15839318 0.000000e+00 6071.0
27 TraesCS3B01G029100 chr3A 85.934 2147 221 28 972 3086 16009214 16011311 0.000000e+00 2217.0
28 TraesCS3B01G029100 chr3A 83.763 2094 282 29 928 2975 17331338 17333419 0.000000e+00 1930.0
29 TraesCS3B01G029100 chr3A 83.202 2161 281 29 973 3065 16234707 16232561 0.000000e+00 1905.0
30 TraesCS3B01G029100 chr3A 83.178 2152 275 38 973 3065 17379927 17377804 0.000000e+00 1888.0
31 TraesCS3B01G029100 chr3A 88.299 1564 162 14 3130 4683 16011285 16012837 0.000000e+00 1855.0
32 TraesCS3B01G029100 chr3A 85.275 1562 183 27 3150 4678 17377804 17376257 0.000000e+00 1567.0
33 TraesCS3B01G029100 chr3A 85.192 1560 185 28 3151 4678 17333522 17335067 0.000000e+00 1559.0
34 TraesCS3B01G029100 chr3A 84.615 1560 193 28 3150 4677 16232561 16231017 0.000000e+00 1507.0
35 TraesCS3B01G029100 chr3A 90.822 730 44 10 183 903 15834894 15835609 0.000000e+00 955.0
36 TraesCS3B01G029100 chr3A 93.525 139 9 0 4790 4928 15842133 15841995 2.060000e-49 207.0
37 TraesCS3B01G029100 chr3A 80.571 175 32 2 5008 5181 642027757 642027584 3.540000e-27 134.0
38 TraesCS3B01G029100 chr3A 80.952 147 25 3 4935 5080 624834875 624835019 4.610000e-21 113.0
39 TraesCS3B01G029100 chr3A 81.022 137 23 2 5157 5291 716371244 716371379 7.720000e-19 106.0
40 TraesCS3B01G029100 chr3A 93.023 43 2 1 740 781 16008972 16009014 1.690000e-05 62.1
41 TraesCS3B01G029100 chr7D 93.357 557 34 3 183 738 439069530 439068976 0.000000e+00 821.0
42 TraesCS3B01G029100 chr7D 84.709 654 58 16 5012 5629 578029709 578030356 2.880000e-172 616.0
43 TraesCS3B01G029100 chr7D 97.674 43 1 0 4935 4977 578029667 578029709 2.180000e-09 75.0
44 TraesCS3B01G029100 chr2A 92.280 557 40 3 183 738 623737705 623737151 0.000000e+00 787.0
45 TraesCS3B01G029100 chr6D 92.803 528 36 2 183 710 80158270 80157745 0.000000e+00 763.0
46 TraesCS3B01G029100 chr5D 90.925 562 42 6 183 738 236254217 236253659 0.000000e+00 747.0
47 TraesCS3B01G029100 chr5D 80.516 698 85 23 4935 5596 553485706 553485024 6.560000e-134 488.0
48 TraesCS3B01G029100 chr2D 82.830 827 132 6 3795 4618 548633818 548634637 0.000000e+00 732.0
49 TraesCS3B01G029100 chr2D 81.448 884 150 8 3802 4678 548449178 548450054 0.000000e+00 712.0
50 TraesCS3B01G029100 chr2D 80.773 931 136 22 3766 4687 633388866 633387970 0.000000e+00 688.0
51 TraesCS3B01G029100 chr2D 82.877 730 65 24 4935 5628 579816674 579817379 8.080000e-168 601.0
52 TraesCS3B01G029100 chr2D 76.289 194 32 3 2524 2716 514947293 514947473 2.160000e-14 91.6
53 TraesCS3B01G029100 chr2B 80.902 953 148 26 3673 4601 655600166 655601108 0.000000e+00 721.0
54 TraesCS3B01G029100 chr2B 75.100 249 48 3 2472 2719 606613840 606614075 2.780000e-18 104.0
55 TraesCS3B01G029100 chr1A 87.406 532 56 6 4935 5464 508125999 508126521 8.080000e-168 601.0
56 TraesCS3B01G029100 chr1B 87.619 420 33 7 5105 5507 37754523 37754940 2.380000e-128 470.0
57 TraesCS3B01G029100 chrUn 90.190 316 31 0 4931 5246 346302490 346302805 4.060000e-111 412.0
58 TraesCS3B01G029100 chrUn 87.805 246 13 5 5242 5470 292832687 292832442 7.190000e-69 272.0
59 TraesCS3B01G029100 chrUn 95.699 93 4 0 5536 5628 292832440 292832348 3.520000e-32 150.0
60 TraesCS3B01G029100 chr7B 96.791 187 6 0 1 187 547443231 547443417 4.240000e-81 313.0
61 TraesCS3B01G029100 chr7B 96.791 187 6 0 1 187 547502740 547502926 4.240000e-81 313.0
62 TraesCS3B01G029100 chr7B 96.237 186 7 0 1 186 676518511 676518696 7.090000e-79 305.0
63 TraesCS3B01G029100 chr5B 96.791 187 6 0 1 187 26864253 26864439 4.240000e-81 313.0
64 TraesCS3B01G029100 chr5B 96.316 190 7 0 1 190 544935838 544935649 4.240000e-81 313.0
65 TraesCS3B01G029100 chr5B 96.774 186 6 0 1 186 522132998 522132813 1.520000e-80 311.0
66 TraesCS3B01G029100 chr5B 94.527 201 9 2 1 200 590498909 590498710 5.480000e-80 309.0
67 TraesCS3B01G029100 chr6B 96.774 186 6 0 1 186 157942336 157942521 1.520000e-80 311.0
68 TraesCS3B01G029100 chr6B 95.833 192 7 1 1 192 652168330 652168140 5.480000e-80 309.0
69 TraesCS3B01G029100 chr6B 77.365 296 24 27 5132 5425 579215324 579215578 9.840000e-28 135.0
70 TraesCS3B01G029100 chr4D 94.737 38 2 0 5056 5093 84976707 84976744 6.090000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G029100 chr3B 12838465 12844097 5632 True 10403.000000 10403 100.000000 1 5633 1 chr3B.!!$R2 5632
1 TraesCS3B01G029100 chr3B 12471870 12476298 4428 False 3518.500000 6878 95.604500 397 4791 2 chr3B.!!$F4 4394
2 TraesCS3B01G029100 chr3B 13245986 13249718 3732 False 2027.500000 2211 86.769000 928 4720 2 chr3B.!!$F6 3792
3 TraesCS3B01G029100 chr3B 12933370 12937029 3659 False 1879.500000 2037 85.463500 928 4683 2 chr3B.!!$F5 3755
4 TraesCS3B01G029100 chr3B 13413561 13414773 1212 False 1098.000000 1098 83.333000 1711 2910 1 chr3B.!!$F1 1199
5 TraesCS3B01G029100 chr3B 87723717 87724220 503 False 257.000000 257 76.864000 5006 5506 1 chr3B.!!$F2 500
6 TraesCS3B01G029100 chr3D 41592956 41597554 4598 True 7494.000000 7494 96.067000 183 4791 1 chr3D.!!$R1 4608
7 TraesCS3B01G029100 chr3D 41423297 41427284 3987 True 3001.750000 5923 94.109000 738 4732 2 chr3D.!!$R5 3994
8 TraesCS3B01G029100 chr3D 5406480 5410272 3792 True 1754.000000 1999 84.653500 928 4683 2 chr3D.!!$R4 3755
9 TraesCS3B01G029100 chr3D 5372921 5376602 3681 True 1740.000000 1884 84.357000 973 4678 2 chr3D.!!$R3 3705
10 TraesCS3B01G029100 chr3D 5328561 5331909 3348 False 1554.500000 1954 83.920500 928 4340 2 chr3D.!!$F4 3412
11 TraesCS3B01G029100 chr3D 27670809 27671362 553 False 809.000000 809 92.998000 183 738 1 chr3D.!!$F1 555
12 TraesCS3B01G029100 chr3D 91210146 91210699 553 False 793.000000 793 92.460000 183 738 1 chr3D.!!$F3 555
13 TraesCS3B01G029100 chr3D 316463348 316463890 542 True 789.000000 789 92.844000 183 727 1 chr3D.!!$R2 544
14 TraesCS3B01G029100 chr3A 15834894 15839318 4424 False 3513.000000 6071 93.448000 183 4683 2 chr3A.!!$F3 4500
15 TraesCS3B01G029100 chr3A 17331338 17335067 3729 False 1744.500000 1930 84.477500 928 4678 2 chr3A.!!$F5 3750
16 TraesCS3B01G029100 chr3A 17376257 17379927 3670 True 1727.500000 1888 84.226500 973 4678 2 chr3A.!!$R4 3705
17 TraesCS3B01G029100 chr3A 16231017 16234707 3690 True 1706.000000 1905 83.908500 973 4677 2 chr3A.!!$R3 3704
18 TraesCS3B01G029100 chr3A 16008972 16012837 3865 False 1378.033333 2217 89.085333 740 4683 3 chr3A.!!$F4 3943
19 TraesCS3B01G029100 chr7D 439068976 439069530 554 True 821.000000 821 93.357000 183 738 1 chr7D.!!$R1 555
20 TraesCS3B01G029100 chr7D 578029667 578030356 689 False 345.500000 616 91.191500 4935 5629 2 chr7D.!!$F1 694
21 TraesCS3B01G029100 chr2A 623737151 623737705 554 True 787.000000 787 92.280000 183 738 1 chr2A.!!$R1 555
22 TraesCS3B01G029100 chr6D 80157745 80158270 525 True 763.000000 763 92.803000 183 710 1 chr6D.!!$R1 527
23 TraesCS3B01G029100 chr5D 236253659 236254217 558 True 747.000000 747 90.925000 183 738 1 chr5D.!!$R1 555
24 TraesCS3B01G029100 chr5D 553485024 553485706 682 True 488.000000 488 80.516000 4935 5596 1 chr5D.!!$R2 661
25 TraesCS3B01G029100 chr2D 548633818 548634637 819 False 732.000000 732 82.830000 3795 4618 1 chr2D.!!$F3 823
26 TraesCS3B01G029100 chr2D 548449178 548450054 876 False 712.000000 712 81.448000 3802 4678 1 chr2D.!!$F2 876
27 TraesCS3B01G029100 chr2D 633387970 633388866 896 True 688.000000 688 80.773000 3766 4687 1 chr2D.!!$R1 921
28 TraesCS3B01G029100 chr2D 579816674 579817379 705 False 601.000000 601 82.877000 4935 5628 1 chr2D.!!$F4 693
29 TraesCS3B01G029100 chr2B 655600166 655601108 942 False 721.000000 721 80.902000 3673 4601 1 chr2B.!!$F2 928
30 TraesCS3B01G029100 chr1A 508125999 508126521 522 False 601.000000 601 87.406000 4935 5464 1 chr1A.!!$F1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.035820 TTAGTCCCGGTTCATGGCAC 60.036 55.000 0.00 0.0 0.00 5.01 F
99 100 0.105039 CTAGGCTCATGAACCGGGAC 59.895 60.000 6.32 0.0 0.00 4.46 F
575 579 0.106167 TAGGCCCAGACTATCAGCGT 60.106 55.000 0.00 0.0 0.00 5.07 F
1746 1842 0.264359 AGGAGCTACTGGAGGCATCT 59.736 55.000 0.00 0.0 0.00 2.90 F
2469 2654 2.039480 GCATCCTGATGAGGCTATGGAA 59.961 50.000 11.23 0.0 46.99 3.53 F
3069 3356 3.025978 TGGATGGATTCACCTCAATTGC 58.974 45.455 0.00 0.0 39.86 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1846 1943 0.114168 CCACCCCCTTCATTGGAACA 59.886 55.000 0.00 0.00 0.00 3.18 R
2038 2208 2.223044 GCTGCTTTCGATAAAACCTCGG 60.223 50.000 0.00 0.00 36.78 4.63 R
2296 2466 1.080772 CAGTAGCGTCAACGGCAGA 60.081 57.895 4.54 0.00 40.23 4.26 R
2585 2770 0.947244 CTGTGACAAGGGTGCACTTC 59.053 55.000 17.98 9.64 34.69 3.01 R
3446 3753 1.303643 GGTAGCACCTGCAGCCTTT 60.304 57.895 8.66 0.00 45.16 3.11 R
4876 5317 0.035458 AGTTCGTCTGCAAAGGGAGG 59.965 55.000 0.00 0.00 32.55 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.125269 CGCACCCTTTAGTCCCGG 60.125 66.667 0.00 0.00 0.00 5.73
18 19 2.951101 CGCACCCTTTAGTCCCGGT 61.951 63.158 0.00 0.00 0.00 5.28
19 20 1.377612 GCACCCTTTAGTCCCGGTT 59.622 57.895 0.00 0.00 0.00 4.44
20 21 0.675837 GCACCCTTTAGTCCCGGTTC 60.676 60.000 0.00 0.00 0.00 3.62
21 22 0.688487 CACCCTTTAGTCCCGGTTCA 59.312 55.000 0.00 0.00 0.00 3.18
22 23 1.280998 CACCCTTTAGTCCCGGTTCAT 59.719 52.381 0.00 0.00 0.00 2.57
23 24 1.280998 ACCCTTTAGTCCCGGTTCATG 59.719 52.381 0.00 0.00 0.00 3.07
24 25 1.408266 CCCTTTAGTCCCGGTTCATGG 60.408 57.143 0.00 0.00 0.00 3.66
25 26 1.379527 CTTTAGTCCCGGTTCATGGC 58.620 55.000 0.00 0.00 0.00 4.40
26 27 0.693622 TTTAGTCCCGGTTCATGGCA 59.306 50.000 0.00 0.00 0.00 4.92
27 28 0.035820 TTAGTCCCGGTTCATGGCAC 60.036 55.000 0.00 0.00 0.00 5.01
28 29 1.906105 TAGTCCCGGTTCATGGCACC 61.906 60.000 0.00 5.18 0.00 5.01
29 30 3.253061 TCCCGGTTCATGGCACCA 61.253 61.111 13.57 0.00 33.36 4.17
30 31 2.282816 CCCGGTTCATGGCACCAA 60.283 61.111 13.57 0.00 33.36 3.67
31 32 2.635443 CCCGGTTCATGGCACCAAC 61.635 63.158 13.57 0.00 33.36 3.77
32 33 2.635443 CCGGTTCATGGCACCAACC 61.635 63.158 16.24 16.24 36.91 3.77
33 34 2.961768 GGTTCATGGCACCAACCG 59.038 61.111 12.38 0.00 34.04 4.44
34 35 2.635443 GGTTCATGGCACCAACCGG 61.635 63.158 12.38 0.00 34.04 5.28
35 36 2.282816 TTCATGGCACCAACCGGG 60.283 61.111 6.32 0.00 44.81 5.73
36 37 2.835049 TTCATGGCACCAACCGGGA 61.835 57.895 6.32 0.00 41.15 5.14
37 38 3.061848 CATGGCACCAACCGGGAC 61.062 66.667 6.32 0.00 41.15 4.46
38 39 3.256960 ATGGCACCAACCGGGACT 61.257 61.111 6.32 0.00 41.15 3.85
39 40 1.921346 ATGGCACCAACCGGGACTA 60.921 57.895 6.32 0.00 41.15 2.59
40 41 1.493854 ATGGCACCAACCGGGACTAA 61.494 55.000 6.32 0.00 41.15 2.24
41 42 1.073548 GGCACCAACCGGGACTAAA 59.926 57.895 6.32 0.00 41.15 1.85
42 43 0.537828 GGCACCAACCGGGACTAAAA 60.538 55.000 6.32 0.00 41.15 1.52
43 44 0.879090 GCACCAACCGGGACTAAAAG 59.121 55.000 6.32 0.00 41.15 2.27
44 45 1.530323 CACCAACCGGGACTAAAAGG 58.470 55.000 6.32 0.00 41.15 3.11
45 46 1.142936 ACCAACCGGGACTAAAAGGT 58.857 50.000 6.32 0.00 41.15 3.50
46 47 1.072806 ACCAACCGGGACTAAAAGGTC 59.927 52.381 6.32 0.00 41.15 3.85
56 57 3.324117 GACTAAAAGGTCCAGACGAACC 58.676 50.000 0.00 0.00 35.69 3.62
57 58 2.288640 ACTAAAAGGTCCAGACGAACCG 60.289 50.000 0.00 0.00 40.63 4.44
58 59 0.250166 AAAAGGTCCAGACGAACCGG 60.250 55.000 0.00 0.00 40.63 5.28
59 60 1.117142 AAAGGTCCAGACGAACCGGA 61.117 55.000 9.46 0.00 40.63 5.14
60 61 1.117142 AAGGTCCAGACGAACCGGAA 61.117 55.000 9.46 0.00 40.63 4.30
61 62 1.373873 GGTCCAGACGAACCGGAAC 60.374 63.158 9.46 0.00 0.00 3.62
62 63 1.364901 GTCCAGACGAACCGGAACA 59.635 57.895 9.46 0.00 0.00 3.18
63 64 0.249573 GTCCAGACGAACCGGAACAA 60.250 55.000 9.46 0.00 0.00 2.83
64 65 0.464870 TCCAGACGAACCGGAACAAA 59.535 50.000 9.46 0.00 0.00 2.83
65 66 1.071071 TCCAGACGAACCGGAACAAAT 59.929 47.619 9.46 0.00 0.00 2.32
66 67 1.196808 CCAGACGAACCGGAACAAATG 59.803 52.381 9.46 0.00 0.00 2.32
67 68 1.196808 CAGACGAACCGGAACAAATGG 59.803 52.381 9.46 0.00 0.00 3.16
68 69 0.109919 GACGAACCGGAACAAATGGC 60.110 55.000 9.46 0.00 0.00 4.40
69 70 1.211709 CGAACCGGAACAAATGGCC 59.788 57.895 9.46 0.00 0.00 5.36
70 71 1.589630 GAACCGGAACAAATGGCCC 59.410 57.895 9.46 0.00 0.00 5.80
71 72 1.152440 AACCGGAACAAATGGCCCA 60.152 52.632 9.46 0.00 0.00 5.36
72 73 1.468506 AACCGGAACAAATGGCCCAC 61.469 55.000 9.46 0.00 0.00 4.61
73 74 2.566010 CGGAACAAATGGCCCACG 59.434 61.111 0.00 0.00 0.00 4.94
74 75 2.265182 CGGAACAAATGGCCCACGT 61.265 57.895 0.00 0.00 0.00 4.49
75 76 1.288752 GGAACAAATGGCCCACGTG 59.711 57.895 9.08 9.08 0.00 4.49
76 77 1.288752 GAACAAATGGCCCACGTGG 59.711 57.895 28.26 28.26 37.09 4.94
95 96 1.447643 CCCCTAGGCTCATGAACCG 59.552 63.158 9.49 0.00 0.00 4.44
96 97 1.447643 CCCTAGGCTCATGAACCGG 59.552 63.158 9.49 0.00 0.00 5.28
97 98 1.447643 CCTAGGCTCATGAACCGGG 59.552 63.158 6.32 11.65 0.00 5.73
98 99 1.048724 CCTAGGCTCATGAACCGGGA 61.049 60.000 19.02 6.00 0.00 5.14
99 100 0.105039 CTAGGCTCATGAACCGGGAC 59.895 60.000 6.32 0.00 0.00 4.46
100 101 0.325296 TAGGCTCATGAACCGGGACT 60.325 55.000 6.32 0.95 0.00 3.85
101 102 0.325296 AGGCTCATGAACCGGGACTA 60.325 55.000 6.32 0.00 0.00 2.59
102 103 0.539986 GGCTCATGAACCGGGACTAA 59.460 55.000 6.32 0.00 0.00 2.24
103 104 1.141053 GGCTCATGAACCGGGACTAAT 59.859 52.381 6.32 0.00 0.00 1.73
104 105 2.213499 GCTCATGAACCGGGACTAATG 58.787 52.381 6.32 2.35 0.00 1.90
105 106 2.213499 CTCATGAACCGGGACTAATGC 58.787 52.381 6.32 0.00 0.00 3.56
106 107 1.134220 TCATGAACCGGGACTAATGCC 60.134 52.381 6.32 0.00 0.00 4.40
107 108 0.182775 ATGAACCGGGACTAATGCCC 59.817 55.000 6.32 0.00 42.41 5.36
108 109 1.153025 GAACCGGGACTAATGCCCC 60.153 63.158 6.32 0.00 42.92 5.80
109 110 2.619941 GAACCGGGACTAATGCCCCC 62.620 65.000 6.32 0.00 42.92 5.40
110 111 3.093835 CCGGGACTAATGCCCCCA 61.094 66.667 0.00 0.00 42.92 4.96
111 112 2.460853 CCGGGACTAATGCCCCCAT 61.461 63.158 0.00 0.00 42.92 4.00
112 113 1.536676 CGGGACTAATGCCCCCATT 59.463 57.895 0.00 0.00 42.92 3.16
113 114 0.768622 CGGGACTAATGCCCCCATTA 59.231 55.000 0.00 0.00 42.92 1.90
119 120 0.768622 TAATGCCCCCATTAGTCCCG 59.231 55.000 0.00 0.00 41.68 5.14
120 121 2.006805 AATGCCCCCATTAGTCCCGG 62.007 60.000 0.00 0.00 39.81 5.73
121 122 3.094498 GCCCCCATTAGTCCCGGT 61.094 66.667 0.00 0.00 0.00 5.28
122 123 2.686572 GCCCCCATTAGTCCCGGTT 61.687 63.158 0.00 0.00 0.00 4.44
123 124 1.530283 CCCCCATTAGTCCCGGTTC 59.470 63.158 0.00 0.00 0.00 3.62
124 125 0.986550 CCCCCATTAGTCCCGGTTCT 60.987 60.000 0.00 0.15 0.00 3.01
125 126 0.180406 CCCCATTAGTCCCGGTTCTG 59.820 60.000 0.00 0.00 0.00 3.02
126 127 0.180406 CCCATTAGTCCCGGTTCTGG 59.820 60.000 0.00 0.00 0.00 3.86
127 128 1.200519 CCATTAGTCCCGGTTCTGGA 58.799 55.000 0.00 0.00 0.00 3.86
132 133 4.631493 TCCCGGTTCTGGACTGAA 57.369 55.556 0.00 0.00 36.72 3.02
133 134 2.055299 TCCCGGTTCTGGACTGAAC 58.945 57.895 12.04 12.04 43.88 3.18
134 135 0.471211 TCCCGGTTCTGGACTGAACT 60.471 55.000 17.61 0.00 44.02 3.01
135 136 0.320771 CCCGGTTCTGGACTGAACTG 60.321 60.000 18.46 18.46 46.97 3.16
136 137 3.217242 CGGTTCTGGACTGAACTGG 57.783 57.895 17.92 9.66 44.94 4.00
137 138 0.320771 CGGTTCTGGACTGAACTGGG 60.321 60.000 17.92 7.85 44.94 4.45
138 139 1.056660 GGTTCTGGACTGAACTGGGA 58.943 55.000 17.61 0.00 44.02 4.37
139 140 1.270893 GGTTCTGGACTGAACTGGGAC 60.271 57.143 17.61 2.26 44.02 4.46
140 141 1.694696 GTTCTGGACTGAACTGGGACT 59.305 52.381 12.89 0.00 42.03 3.85
141 142 2.897969 GTTCTGGACTGAACTGGGACTA 59.102 50.000 12.89 0.00 42.03 2.59
142 143 3.254093 TCTGGACTGAACTGGGACTAA 57.746 47.619 0.00 0.00 0.00 2.24
143 144 3.791320 TCTGGACTGAACTGGGACTAAT 58.209 45.455 0.00 0.00 0.00 1.73
144 145 3.515502 TCTGGACTGAACTGGGACTAATG 59.484 47.826 0.00 0.00 0.00 1.90
145 146 2.571653 TGGACTGAACTGGGACTAATGG 59.428 50.000 0.00 0.00 0.00 3.16
146 147 2.092914 GGACTGAACTGGGACTAATGGG 60.093 54.545 0.00 0.00 0.00 4.00
147 148 1.282157 ACTGAACTGGGACTAATGGGC 59.718 52.381 0.00 0.00 0.00 5.36
148 149 1.561542 CTGAACTGGGACTAATGGGCT 59.438 52.381 0.00 0.00 0.00 5.19
149 150 2.771943 CTGAACTGGGACTAATGGGCTA 59.228 50.000 0.00 0.00 0.00 3.93
150 151 3.186283 TGAACTGGGACTAATGGGCTAA 58.814 45.455 0.00 0.00 0.00 3.09
151 152 3.054655 TGAACTGGGACTAATGGGCTAAC 60.055 47.826 0.00 0.00 0.00 2.34
152 153 1.844497 ACTGGGACTAATGGGCTAACC 59.156 52.381 0.00 0.00 40.81 2.85
162 163 4.484872 GGCTAACCCGGCCTGGAC 62.485 72.222 21.63 6.01 45.57 4.02
163 164 4.484872 GCTAACCCGGCCTGGACC 62.485 72.222 21.63 0.96 42.00 4.46
164 165 3.006728 CTAACCCGGCCTGGACCA 61.007 66.667 21.63 3.17 42.00 4.02
165 166 2.529643 TAACCCGGCCTGGACCAA 60.530 61.111 21.63 0.00 42.00 3.67
166 167 2.132089 CTAACCCGGCCTGGACCAAA 62.132 60.000 21.63 0.00 42.00 3.28
167 168 2.132089 TAACCCGGCCTGGACCAAAG 62.132 60.000 21.63 2.26 42.00 2.77
171 172 3.984732 GGCCTGGACCAAAGCCCT 61.985 66.667 20.24 0.00 39.60 5.19
172 173 2.361737 GCCTGGACCAAAGCCCTC 60.362 66.667 0.00 0.00 0.00 4.30
173 174 2.911926 GCCTGGACCAAAGCCCTCT 61.912 63.158 0.00 0.00 0.00 3.69
174 175 1.770324 CCTGGACCAAAGCCCTCTT 59.230 57.895 0.00 0.00 0.00 2.85
175 176 0.113190 CCTGGACCAAAGCCCTCTTT 59.887 55.000 0.00 0.00 42.92 2.52
176 177 1.481242 CCTGGACCAAAGCCCTCTTTT 60.481 52.381 0.00 0.00 40.35 2.27
177 178 1.889170 CTGGACCAAAGCCCTCTTTTC 59.111 52.381 0.00 0.00 40.35 2.29
178 179 1.499007 TGGACCAAAGCCCTCTTTTCT 59.501 47.619 0.00 0.00 40.35 2.52
179 180 2.714250 TGGACCAAAGCCCTCTTTTCTA 59.286 45.455 0.00 0.00 40.35 2.10
180 181 3.082548 GGACCAAAGCCCTCTTTTCTAC 58.917 50.000 0.00 0.00 40.35 2.59
181 182 3.244946 GGACCAAAGCCCTCTTTTCTACT 60.245 47.826 0.00 0.00 40.35 2.57
182 183 4.019591 GGACCAAAGCCCTCTTTTCTACTA 60.020 45.833 0.00 0.00 40.35 1.82
183 184 5.167303 ACCAAAGCCCTCTTTTCTACTAG 57.833 43.478 0.00 0.00 40.35 2.57
184 185 4.597940 ACCAAAGCCCTCTTTTCTACTAGT 59.402 41.667 0.00 0.00 40.35 2.57
185 186 4.938226 CCAAAGCCCTCTTTTCTACTAGTG 59.062 45.833 5.39 0.00 40.35 2.74
186 187 5.280011 CCAAAGCCCTCTTTTCTACTAGTGA 60.280 44.000 5.39 0.00 40.35 3.41
187 188 5.408880 AAGCCCTCTTTTCTACTAGTGAC 57.591 43.478 5.39 0.00 0.00 3.67
191 192 5.265989 CCCTCTTTTCTACTAGTGACCTCT 58.734 45.833 5.39 0.00 0.00 3.69
199 200 3.722908 ACTAGTGACCTCTAGCAGTGA 57.277 47.619 0.00 0.00 40.50 3.41
499 503 3.542676 CCATACCCGGCAGGCGTA 61.543 66.667 16.17 2.14 40.58 4.42
534 538 6.958192 ACCTCAGGTCTTAGATGTTAGGTTTA 59.042 38.462 0.00 0.00 30.79 2.01
575 579 0.106167 TAGGCCCAGACTATCAGCGT 60.106 55.000 0.00 0.00 0.00 5.07
603 607 1.822990 TCAACTGGTTAGGAGTAGCGG 59.177 52.381 0.00 0.00 0.00 5.52
696 703 5.772825 ATAAAATGGCTGCATACATCGTT 57.227 34.783 0.50 4.92 0.00 3.85
700 707 0.940126 GGCTGCATACATCGTTCAGG 59.060 55.000 0.50 0.00 0.00 3.86
702 709 2.483013 GGCTGCATACATCGTTCAGGTA 60.483 50.000 0.50 0.00 0.00 3.08
711 718 1.218316 CGTTCAGGTACAGAGGCCC 59.782 63.158 0.00 0.00 0.00 5.80
727 735 2.368011 CCCGGGTCCTCCTCCTTTC 61.368 68.421 14.18 0.00 0.00 2.62
733 741 2.239150 GGGTCCTCCTCCTTTCCTAAAC 59.761 54.545 0.00 0.00 0.00 2.01
738 746 5.473846 GTCCTCCTCCTTTCCTAAACAAAAG 59.526 44.000 0.00 0.00 0.00 2.27
739 747 5.371472 TCCTCCTCCTTTCCTAAACAAAAGA 59.629 40.000 0.00 0.00 0.00 2.52
741 749 6.207614 CCTCCTCCTTTCCTAAACAAAAGAAG 59.792 42.308 0.00 0.00 0.00 2.85
742 750 6.068670 TCCTCCTTTCCTAAACAAAAGAAGG 58.931 40.000 0.00 0.00 0.00 3.46
746 754 6.038936 TCCTTTCCTAAACAAAAGAAGGAACG 59.961 38.462 2.23 1.43 45.45 3.95
1395 1476 1.676006 CTCAACCTTGGCGACTTTGTT 59.324 47.619 0.00 0.00 0.00 2.83
1704 1800 0.320374 TCCTTGTCTACTGGGTTGCG 59.680 55.000 0.00 0.00 0.00 4.85
1746 1842 0.264359 AGGAGCTACTGGAGGCATCT 59.736 55.000 0.00 0.00 0.00 2.90
1898 2016 6.042781 TCTCCTGATCAACATGATGATGATGA 59.957 38.462 21.76 14.72 43.31 2.92
1900 2018 6.655003 TCCTGATCAACATGATGATGATGATG 59.345 38.462 21.76 10.99 46.57 3.07
1901 2019 6.655003 CCTGATCAACATGATGATGATGATGA 59.345 38.462 21.76 12.25 46.57 2.92
1902 2020 7.337942 CCTGATCAACATGATGATGATGATGAT 59.662 37.037 21.76 15.20 46.57 2.45
1903 2021 8.044060 TGATCAACATGATGATGATGATGATG 57.956 34.615 21.76 0.00 46.57 3.07
1904 2022 7.882791 TGATCAACATGATGATGATGATGATGA 59.117 33.333 21.76 10.40 46.57 2.92
1905 2023 8.814038 ATCAACATGATGATGATGATGATGAT 57.186 30.769 16.84 10.41 45.51 2.45
1906 2024 8.044060 TCAACATGATGATGATGATGATGATG 57.956 34.615 0.83 0.00 36.69 3.07
1907 2025 7.882791 TCAACATGATGATGATGATGATGATGA 59.117 33.333 0.83 1.17 36.69 2.92
1908 2026 8.680903 CAACATGATGATGATGATGATGATGAT 58.319 33.333 0.00 0.00 34.97 2.45
1909 2027 8.218338 ACATGATGATGATGATGATGATGATG 57.782 34.615 0.00 0.00 33.36 3.07
1910 2028 8.049117 ACATGATGATGATGATGATGATGATGA 58.951 33.333 0.00 0.00 33.36 2.92
1911 2029 9.064706 CATGATGATGATGATGATGATGATGAT 57.935 33.333 0.00 0.00 0.00 2.45
1912 2030 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
2038 2208 2.162408 CCTCCCACGAAGCAAAAAGATC 59.838 50.000 0.00 0.00 0.00 2.75
2052 2222 5.163794 GCAAAAAGATCCGAGGTTTTATCGA 60.164 40.000 0.00 0.00 42.76 3.59
2296 2466 2.293399 GCCAACGTTCTTCCTGTCAATT 59.707 45.455 0.00 0.00 0.00 2.32
2342 2527 5.588240 TGTGACAACTACTAGTGTCAACAG 58.412 41.667 13.69 1.55 37.70 3.16
2469 2654 2.039480 GCATCCTGATGAGGCTATGGAA 59.961 50.000 11.23 0.00 46.99 3.53
2585 2770 3.119137 TCAGTATCAACAGATGACGGTGG 60.119 47.826 0.00 0.00 41.93 4.61
2995 3275 5.162980 ACTTGGGGACTATTTTGGTTTCTCT 60.163 40.000 0.00 0.00 0.00 3.10
3069 3356 3.025978 TGGATGGATTCACCTCAATTGC 58.974 45.455 0.00 0.00 39.86 3.56
3106 3393 3.842007 TTGACCCGAAACTGTAGGAAA 57.158 42.857 0.00 0.00 0.00 3.13
3252 3551 7.013369 GGACAAGACTTTTAGGTTTGTCATTCT 59.987 37.037 18.53 0.00 45.73 2.40
3446 3753 2.519780 GGTTTTGACGGTGGGCCA 60.520 61.111 0.00 0.00 34.09 5.36
3953 4332 7.715657 TGAATAGCCACTTATTTAATTGCAGG 58.284 34.615 0.00 0.00 0.00 4.85
4005 4384 2.670148 GGATCTGCTCCGGGTGGTT 61.670 63.158 0.00 0.00 33.29 3.67
4110 4489 2.300723 ACCGCAAGTGTATTACCACTCA 59.699 45.455 0.00 0.00 44.74 3.41
4491 4871 0.664761 CGTGGCTGCAGGGAAATATG 59.335 55.000 17.12 0.00 0.00 1.78
4649 5029 4.379813 CCAGTAGTTGCGAATCAAATTGCT 60.380 41.667 0.00 0.00 36.26 3.91
4741 5182 0.695803 AGAATGGGGACTGGGCCTAG 60.696 60.000 15.72 15.72 0.00 3.02
4755 5196 2.514803 GGCCTAGGTCAAGCTGAAAAA 58.485 47.619 9.01 0.00 0.00 1.94
4785 5226 3.181507 CGCAGATATGTGACTTTTGGTGG 60.182 47.826 3.61 0.00 0.00 4.61
4791 5232 1.272203 TGTGACTTTTGGTGGTGGTGT 60.272 47.619 0.00 0.00 0.00 4.16
4792 5233 2.026169 TGTGACTTTTGGTGGTGGTGTA 60.026 45.455 0.00 0.00 0.00 2.90
4793 5234 3.219281 GTGACTTTTGGTGGTGGTGTAT 58.781 45.455 0.00 0.00 0.00 2.29
4794 5235 4.141459 TGTGACTTTTGGTGGTGGTGTATA 60.141 41.667 0.00 0.00 0.00 1.47
4795 5236 5.007682 GTGACTTTTGGTGGTGGTGTATAT 58.992 41.667 0.00 0.00 0.00 0.86
4796 5237 5.007034 TGACTTTTGGTGGTGGTGTATATG 58.993 41.667 0.00 0.00 0.00 1.78
4797 5238 3.761752 ACTTTTGGTGGTGGTGTATATGC 59.238 43.478 0.00 0.00 0.00 3.14
4798 5239 3.730215 TTTGGTGGTGGTGTATATGCT 57.270 42.857 0.00 0.00 0.00 3.79
4799 5240 4.846168 TTTGGTGGTGGTGTATATGCTA 57.154 40.909 0.00 0.00 0.00 3.49
4800 5241 4.846168 TTGGTGGTGGTGTATATGCTAA 57.154 40.909 0.00 0.00 0.00 3.09
4801 5242 4.145365 TGGTGGTGGTGTATATGCTAAC 57.855 45.455 0.00 0.00 0.00 2.34
4802 5243 3.519913 TGGTGGTGGTGTATATGCTAACA 59.480 43.478 0.00 0.00 0.00 2.41
4803 5244 4.019231 TGGTGGTGGTGTATATGCTAACAA 60.019 41.667 0.00 0.00 0.00 2.83
4804 5245 4.944930 GGTGGTGGTGTATATGCTAACAAA 59.055 41.667 0.00 0.00 0.00 2.83
4805 5246 5.416326 GGTGGTGGTGTATATGCTAACAAAA 59.584 40.000 0.00 0.00 0.00 2.44
4806 5247 6.071840 GGTGGTGGTGTATATGCTAACAAAAA 60.072 38.462 0.00 0.00 0.00 1.94
4807 5248 7.363443 GGTGGTGGTGTATATGCTAACAAAAAT 60.363 37.037 0.00 0.00 0.00 1.82
4808 5249 8.032451 GTGGTGGTGTATATGCTAACAAAAATT 58.968 33.333 0.00 0.00 0.00 1.82
4809 5250 9.244292 TGGTGGTGTATATGCTAACAAAAATTA 57.756 29.630 0.00 0.00 0.00 1.40
4842 5283 9.764363 TTGTAAGTGATTATATAGCTGTGGAAG 57.236 33.333 0.00 0.00 0.00 3.46
4843 5284 8.367911 TGTAAGTGATTATATAGCTGTGGAAGG 58.632 37.037 0.00 0.00 0.00 3.46
4844 5285 6.365970 AGTGATTATATAGCTGTGGAAGGG 57.634 41.667 0.00 0.00 0.00 3.95
4845 5286 6.084738 AGTGATTATATAGCTGTGGAAGGGA 58.915 40.000 0.00 0.00 0.00 4.20
4846 5287 6.558775 AGTGATTATATAGCTGTGGAAGGGAA 59.441 38.462 0.00 0.00 0.00 3.97
4847 5288 6.876257 GTGATTATATAGCTGTGGAAGGGAAG 59.124 42.308 0.00 0.00 0.00 3.46
4848 5289 3.778954 ATATAGCTGTGGAAGGGAAGC 57.221 47.619 0.00 0.00 35.86 3.86
4849 5290 1.289160 ATAGCTGTGGAAGGGAAGCA 58.711 50.000 0.00 0.00 38.14 3.91
4850 5291 1.289160 TAGCTGTGGAAGGGAAGCAT 58.711 50.000 0.00 0.00 38.14 3.79
4851 5292 1.289160 AGCTGTGGAAGGGAAGCATA 58.711 50.000 0.00 0.00 38.14 3.14
4852 5293 1.849039 AGCTGTGGAAGGGAAGCATAT 59.151 47.619 0.00 0.00 38.14 1.78
4853 5294 2.243221 AGCTGTGGAAGGGAAGCATATT 59.757 45.455 0.00 0.00 38.14 1.28
4854 5295 3.026694 GCTGTGGAAGGGAAGCATATTT 58.973 45.455 0.00 0.00 35.69 1.40
4855 5296 3.067320 GCTGTGGAAGGGAAGCATATTTC 59.933 47.826 0.00 0.00 35.69 2.17
4856 5297 3.631250 TGTGGAAGGGAAGCATATTTCC 58.369 45.455 0.00 0.00 44.82 3.13
4862 5303 2.755952 GGAAGCATATTTCCCCACCT 57.244 50.000 0.00 0.00 40.64 4.00
4863 5304 3.032265 GGAAGCATATTTCCCCACCTT 57.968 47.619 0.00 0.00 40.64 3.50
4864 5305 4.178956 GGAAGCATATTTCCCCACCTTA 57.821 45.455 0.00 0.00 40.64 2.69
4865 5306 3.889538 GGAAGCATATTTCCCCACCTTAC 59.110 47.826 0.00 0.00 40.64 2.34
4866 5307 3.595190 AGCATATTTCCCCACCTTACC 57.405 47.619 0.00 0.00 0.00 2.85
4867 5308 2.158667 AGCATATTTCCCCACCTTACCG 60.159 50.000 0.00 0.00 0.00 4.02
4868 5309 2.422377 GCATATTTCCCCACCTTACCGT 60.422 50.000 0.00 0.00 0.00 4.83
4869 5310 3.181452 GCATATTTCCCCACCTTACCGTA 60.181 47.826 0.00 0.00 0.00 4.02
4870 5311 4.383173 CATATTTCCCCACCTTACCGTAC 58.617 47.826 0.00 0.00 0.00 3.67
4871 5312 0.983467 TTTCCCCACCTTACCGTACC 59.017 55.000 0.00 0.00 0.00 3.34
4872 5313 0.178909 TTCCCCACCTTACCGTACCA 60.179 55.000 0.00 0.00 0.00 3.25
4873 5314 0.178909 TCCCCACCTTACCGTACCAA 60.179 55.000 0.00 0.00 0.00 3.67
4874 5315 0.036105 CCCCACCTTACCGTACCAAC 60.036 60.000 0.00 0.00 0.00 3.77
4875 5316 0.686224 CCCACCTTACCGTACCAACA 59.314 55.000 0.00 0.00 0.00 3.33
4876 5317 1.608801 CCCACCTTACCGTACCAACAC 60.609 57.143 0.00 0.00 0.00 3.32
4877 5318 1.608801 CCACCTTACCGTACCAACACC 60.609 57.143 0.00 0.00 0.00 4.16
4878 5319 1.345415 CACCTTACCGTACCAACACCT 59.655 52.381 0.00 0.00 0.00 4.00
4879 5320 1.620323 ACCTTACCGTACCAACACCTC 59.380 52.381 0.00 0.00 0.00 3.85
4880 5321 1.066645 CCTTACCGTACCAACACCTCC 60.067 57.143 0.00 0.00 0.00 4.30
4881 5322 0.975887 TTACCGTACCAACACCTCCC 59.024 55.000 0.00 0.00 0.00 4.30
4882 5323 0.114954 TACCGTACCAACACCTCCCT 59.885 55.000 0.00 0.00 0.00 4.20
4883 5324 0.765519 ACCGTACCAACACCTCCCTT 60.766 55.000 0.00 0.00 0.00 3.95
4884 5325 0.399075 CCGTACCAACACCTCCCTTT 59.601 55.000 0.00 0.00 0.00 3.11
4885 5326 1.519408 CGTACCAACACCTCCCTTTG 58.481 55.000 0.00 0.00 0.00 2.77
4886 5327 1.244816 GTACCAACACCTCCCTTTGC 58.755 55.000 0.00 0.00 0.00 3.68
4887 5328 0.847373 TACCAACACCTCCCTTTGCA 59.153 50.000 0.00 0.00 0.00 4.08
4888 5329 0.468029 ACCAACACCTCCCTTTGCAG 60.468 55.000 0.00 0.00 0.00 4.41
4889 5330 0.178992 CCAACACCTCCCTTTGCAGA 60.179 55.000 0.00 0.00 0.00 4.26
4890 5331 0.954452 CAACACCTCCCTTTGCAGAC 59.046 55.000 0.00 0.00 0.00 3.51
4891 5332 0.535102 AACACCTCCCTTTGCAGACG 60.535 55.000 0.00 0.00 0.00 4.18
4892 5333 1.371183 CACCTCCCTTTGCAGACGA 59.629 57.895 0.00 0.00 0.00 4.20
4893 5334 0.250295 CACCTCCCTTTGCAGACGAA 60.250 55.000 0.00 0.00 0.00 3.85
4894 5335 0.250338 ACCTCCCTTTGCAGACGAAC 60.250 55.000 0.00 0.00 0.00 3.95
4895 5336 0.035458 CCTCCCTTTGCAGACGAACT 59.965 55.000 0.00 0.00 0.00 3.01
4896 5337 1.275291 CCTCCCTTTGCAGACGAACTA 59.725 52.381 0.00 0.00 0.00 2.24
4897 5338 2.289444 CCTCCCTTTGCAGACGAACTAA 60.289 50.000 0.00 0.00 0.00 2.24
4898 5339 2.737252 CTCCCTTTGCAGACGAACTAAC 59.263 50.000 0.00 0.00 0.00 2.34
4899 5340 2.103432 TCCCTTTGCAGACGAACTAACA 59.897 45.455 0.00 0.00 0.00 2.41
4900 5341 3.074412 CCCTTTGCAGACGAACTAACAT 58.926 45.455 0.00 0.00 0.00 2.71
4901 5342 4.020928 TCCCTTTGCAGACGAACTAACATA 60.021 41.667 0.00 0.00 0.00 2.29
4902 5343 4.693566 CCCTTTGCAGACGAACTAACATAA 59.306 41.667 0.00 0.00 0.00 1.90
4903 5344 5.163854 CCCTTTGCAGACGAACTAACATAAG 60.164 44.000 0.00 0.00 0.00 1.73
4904 5345 4.921470 TTGCAGACGAACTAACATAAGC 57.079 40.909 0.00 0.00 0.00 3.09
4905 5346 3.920446 TGCAGACGAACTAACATAAGCA 58.080 40.909 0.00 0.00 0.00 3.91
4906 5347 4.503910 TGCAGACGAACTAACATAAGCAT 58.496 39.130 0.00 0.00 0.00 3.79
4907 5348 5.656480 TGCAGACGAACTAACATAAGCATA 58.344 37.500 0.00 0.00 0.00 3.14
4908 5349 5.748630 TGCAGACGAACTAACATAAGCATAG 59.251 40.000 0.00 0.00 0.00 2.23
4909 5350 5.332656 GCAGACGAACTAACATAAGCATAGC 60.333 44.000 0.00 0.00 0.00 2.97
4910 5351 5.748630 CAGACGAACTAACATAAGCATAGCA 59.251 40.000 0.00 0.00 0.00 3.49
4911 5352 6.255670 CAGACGAACTAACATAAGCATAGCAA 59.744 38.462 0.00 0.00 0.00 3.91
4912 5353 6.816640 AGACGAACTAACATAAGCATAGCAAA 59.183 34.615 0.00 0.00 0.00 3.68
4913 5354 7.333423 AGACGAACTAACATAAGCATAGCAAAA 59.667 33.333 0.00 0.00 0.00 2.44
4914 5355 7.985476 ACGAACTAACATAAGCATAGCAAAAT 58.015 30.769 0.00 0.00 0.00 1.82
4915 5356 8.458843 ACGAACTAACATAAGCATAGCAAAATT 58.541 29.630 0.00 0.00 0.00 1.82
4916 5357 8.947940 CGAACTAACATAAGCATAGCAAAATTC 58.052 33.333 0.00 0.00 0.00 2.17
4917 5358 9.787532 GAACTAACATAAGCATAGCAAAATTCA 57.212 29.630 0.00 0.00 0.00 2.57
4919 5360 9.740239 ACTAACATAAGCATAGCAAAATTCATG 57.260 29.630 0.00 0.00 0.00 3.07
4920 5361 9.955208 CTAACATAAGCATAGCAAAATTCATGA 57.045 29.630 0.00 0.00 0.00 3.07
4921 5362 8.638685 AACATAAGCATAGCAAAATTCATGAC 57.361 30.769 0.00 0.00 0.00 3.06
4922 5363 7.774134 ACATAAGCATAGCAAAATTCATGACA 58.226 30.769 0.00 0.00 0.00 3.58
4923 5364 8.418662 ACATAAGCATAGCAAAATTCATGACAT 58.581 29.630 0.00 0.00 0.00 3.06
4924 5365 9.902196 CATAAGCATAGCAAAATTCATGACATA 57.098 29.630 0.00 0.00 0.00 2.29
4940 5381 8.837788 TCATGACATATTAATACCAAGAGCAG 57.162 34.615 0.00 0.00 0.00 4.24
4977 5418 2.535485 AAATCATCCGCCTGCGTCCA 62.535 55.000 10.94 0.00 37.81 4.02
4982 5423 2.535485 ATCCGCCTGCGTCCATTTGA 62.535 55.000 10.94 0.00 37.81 2.69
4983 5424 2.331893 CCGCCTGCGTCCATTTGAA 61.332 57.895 10.94 0.00 37.81 2.69
4988 5429 1.086696 CTGCGTCCATTTGAATCCGT 58.913 50.000 0.00 0.00 0.00 4.69
5067 5508 1.375396 CGTGCGGACCCATTTCTGA 60.375 57.895 0.00 0.00 0.00 3.27
5082 5523 5.010922 CCATTTCTGACTCAAATTTGGGACA 59.989 40.000 24.78 21.95 32.68 4.02
5111 5556 1.646540 CAAAGCGGACACAAAGCGA 59.353 52.632 0.00 0.00 35.78 4.93
5112 5557 0.028770 CAAAGCGGACACAAAGCGAA 59.971 50.000 0.00 0.00 35.78 4.70
5144 5589 2.676822 TCTTCGTCCGCCTCTGCT 60.677 61.111 0.00 0.00 34.43 4.24
5145 5590 2.507992 CTTCGTCCGCCTCTGCTG 60.508 66.667 0.00 0.00 34.43 4.41
5218 5663 1.305633 CCTCTCTCTCTGGCCCACA 60.306 63.158 0.00 0.00 0.00 4.17
5311 5757 4.156622 CTGCAGCGGATGTGCACG 62.157 66.667 13.13 0.46 45.96 5.34
5427 5893 3.834726 GCTCGAGGCAGCTCTAGA 58.165 61.111 15.58 0.00 41.35 2.43
5478 5945 1.266989 GCACACCTAAACTTGCACCTC 59.733 52.381 0.00 0.00 34.97 3.85
5511 5978 4.637873 GCTAGCTAGCTACGTGCC 57.362 61.111 33.71 6.73 45.62 5.01
5512 5979 1.370657 GCTAGCTAGCTACGTGCCG 60.371 63.158 33.71 10.84 45.62 5.69
5514 5981 3.177272 TAGCTAGCTACGTGCCGCG 62.177 63.158 20.67 0.00 44.23 6.46
5523 5990 3.711842 CGTGCCGCGTCAATGTGT 61.712 61.111 4.92 0.00 35.54 3.72
5524 5991 2.376538 CGTGCCGCGTCAATGTGTA 61.377 57.895 4.92 0.00 35.54 2.90
5526 5993 0.247655 GTGCCGCGTCAATGTGTATG 60.248 55.000 4.92 0.00 0.00 2.39
5527 5994 0.672091 TGCCGCGTCAATGTGTATGT 60.672 50.000 4.92 0.00 0.00 2.29
5565 6050 1.690219 AAGGGCGAGCATCCGATCTT 61.690 55.000 0.00 0.00 0.00 2.40
5572 6057 1.005630 GCATCCGATCTTCTCCCGG 60.006 63.158 0.00 0.00 44.22 5.73
5593 6078 0.665670 CAGCATCCGACTAGCATCCG 60.666 60.000 0.00 0.00 0.00 4.18
5629 6114 3.050275 GCTTGCTCCTCCGCGTTT 61.050 61.111 4.92 0.00 0.00 3.60
5630 6115 2.617274 GCTTGCTCCTCCGCGTTTT 61.617 57.895 4.92 0.00 0.00 2.43
5631 6116 1.497722 CTTGCTCCTCCGCGTTTTC 59.502 57.895 4.92 0.00 0.00 2.29
5632 6117 1.227704 TTGCTCCTCCGCGTTTTCA 60.228 52.632 4.92 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.125269 CCGGGACTAAAGGGTGCG 60.125 66.667 0.00 0.00 0.00 5.34
2 3 0.688487 TGAACCGGGACTAAAGGGTG 59.312 55.000 6.32 0.00 31.96 4.61
5 6 2.017113 GCCATGAACCGGGACTAAAGG 61.017 57.143 6.32 0.00 0.00 3.11
6 7 1.339631 TGCCATGAACCGGGACTAAAG 60.340 52.381 6.32 0.00 0.00 1.85
7 8 0.693622 TGCCATGAACCGGGACTAAA 59.306 50.000 6.32 0.00 0.00 1.85
8 9 0.035820 GTGCCATGAACCGGGACTAA 60.036 55.000 6.32 0.00 41.35 2.24
9 10 1.600107 GTGCCATGAACCGGGACTA 59.400 57.895 6.32 0.00 41.35 2.59
10 11 2.351276 GTGCCATGAACCGGGACT 59.649 61.111 6.32 0.00 41.35 3.85
11 12 2.750237 GGTGCCATGAACCGGGAC 60.750 66.667 6.32 0.00 43.66 4.46
12 13 2.835049 TTGGTGCCATGAACCGGGA 61.835 57.895 6.32 0.00 40.86 5.14
13 14 2.282816 TTGGTGCCATGAACCGGG 60.283 61.111 6.32 0.00 40.86 5.73
14 15 2.635443 GGTTGGTGCCATGAACCGG 61.635 63.158 0.00 0.00 40.86 5.28
15 16 2.961768 GGTTGGTGCCATGAACCG 59.038 61.111 11.54 0.00 40.86 4.44
16 17 2.635443 CCGGTTGGTGCCATGAACC 61.635 63.158 9.87 9.87 38.26 3.62
17 18 2.635443 CCCGGTTGGTGCCATGAAC 61.635 63.158 0.00 0.00 0.00 3.18
18 19 2.282816 CCCGGTTGGTGCCATGAA 60.283 61.111 0.00 0.00 0.00 2.57
19 20 3.253061 TCCCGGTTGGTGCCATGA 61.253 61.111 0.00 0.00 34.77 3.07
20 21 2.191786 TAGTCCCGGTTGGTGCCATG 62.192 60.000 0.00 0.00 34.77 3.66
21 22 1.493854 TTAGTCCCGGTTGGTGCCAT 61.494 55.000 0.00 0.00 34.77 4.40
22 23 1.706995 TTTAGTCCCGGTTGGTGCCA 61.707 55.000 0.00 0.00 34.77 4.92
23 24 0.537828 TTTTAGTCCCGGTTGGTGCC 60.538 55.000 0.00 0.00 34.77 5.01
24 25 0.879090 CTTTTAGTCCCGGTTGGTGC 59.121 55.000 0.00 0.00 34.77 5.01
25 26 1.202842 ACCTTTTAGTCCCGGTTGGTG 60.203 52.381 0.00 0.00 34.77 4.17
26 27 1.072806 GACCTTTTAGTCCCGGTTGGT 59.927 52.381 0.00 0.00 34.77 3.67
27 28 1.817357 GACCTTTTAGTCCCGGTTGG 58.183 55.000 0.00 0.00 0.00 3.77
35 36 3.324117 GGTTCGTCTGGACCTTTTAGTC 58.676 50.000 0.00 0.00 35.95 2.59
36 37 2.288640 CGGTTCGTCTGGACCTTTTAGT 60.289 50.000 0.00 0.00 0.00 2.24
37 38 2.334838 CGGTTCGTCTGGACCTTTTAG 58.665 52.381 0.00 0.00 0.00 1.85
38 39 1.001181 CCGGTTCGTCTGGACCTTTTA 59.999 52.381 0.00 0.00 45.09 1.52
39 40 0.250166 CCGGTTCGTCTGGACCTTTT 60.250 55.000 0.00 0.00 45.09 2.27
40 41 1.117142 TCCGGTTCGTCTGGACCTTT 61.117 55.000 0.00 0.00 45.77 3.11
41 42 1.532316 TCCGGTTCGTCTGGACCTT 60.532 57.895 0.00 0.00 45.77 3.50
42 43 2.116772 TCCGGTTCGTCTGGACCT 59.883 61.111 0.00 0.00 45.77 3.85
46 47 1.196808 CATTTGTTCCGGTTCGTCTGG 59.803 52.381 0.00 2.66 43.70 3.86
47 48 1.196808 CCATTTGTTCCGGTTCGTCTG 59.803 52.381 0.00 0.00 0.00 3.51
48 49 1.519408 CCATTTGTTCCGGTTCGTCT 58.481 50.000 0.00 0.00 0.00 4.18
49 50 0.109919 GCCATTTGTTCCGGTTCGTC 60.110 55.000 0.00 0.00 0.00 4.20
50 51 1.520600 GGCCATTTGTTCCGGTTCGT 61.521 55.000 0.00 0.00 0.00 3.85
51 52 1.211709 GGCCATTTGTTCCGGTTCG 59.788 57.895 0.00 0.00 0.00 3.95
52 53 1.182385 TGGGCCATTTGTTCCGGTTC 61.182 55.000 0.00 0.00 0.00 3.62
53 54 1.152440 TGGGCCATTTGTTCCGGTT 60.152 52.632 0.00 0.00 0.00 4.44
54 55 1.906333 GTGGGCCATTTGTTCCGGT 60.906 57.895 10.70 0.00 0.00 5.28
55 56 2.969827 GTGGGCCATTTGTTCCGG 59.030 61.111 10.70 0.00 0.00 5.14
56 57 2.265182 ACGTGGGCCATTTGTTCCG 61.265 57.895 10.70 9.45 0.00 4.30
57 58 1.288752 CACGTGGGCCATTTGTTCC 59.711 57.895 10.70 0.00 0.00 3.62
58 59 1.288752 CCACGTGGGCCATTTGTTC 59.711 57.895 27.57 0.00 0.00 3.18
59 60 3.453988 CCACGTGGGCCATTTGTT 58.546 55.556 27.57 0.00 0.00 2.83
77 78 1.447643 CGGTTCATGAGCCTAGGGG 59.552 63.158 24.17 6.54 0.00 4.79
78 79 1.447643 CCGGTTCATGAGCCTAGGG 59.552 63.158 24.17 15.26 0.00 3.53
79 80 1.048724 TCCCGGTTCATGAGCCTAGG 61.049 60.000 24.17 22.73 0.00 3.02
80 81 0.105039 GTCCCGGTTCATGAGCCTAG 59.895 60.000 24.17 15.73 0.00 3.02
81 82 0.325296 AGTCCCGGTTCATGAGCCTA 60.325 55.000 24.17 8.72 0.00 3.93
82 83 0.325296 TAGTCCCGGTTCATGAGCCT 60.325 55.000 24.17 9.43 0.00 4.58
83 84 0.539986 TTAGTCCCGGTTCATGAGCC 59.460 55.000 18.11 18.11 0.00 4.70
84 85 2.213499 CATTAGTCCCGGTTCATGAGC 58.787 52.381 0.00 0.04 0.00 4.26
85 86 2.213499 GCATTAGTCCCGGTTCATGAG 58.787 52.381 0.00 0.00 0.00 2.90
86 87 1.134220 GGCATTAGTCCCGGTTCATGA 60.134 52.381 0.00 0.00 0.00 3.07
87 88 1.308998 GGCATTAGTCCCGGTTCATG 58.691 55.000 0.00 0.00 0.00 3.07
88 89 0.182775 GGGCATTAGTCCCGGTTCAT 59.817 55.000 0.00 0.00 33.43 2.57
89 90 1.605453 GGGCATTAGTCCCGGTTCA 59.395 57.895 0.00 0.00 33.43 3.18
90 91 4.553668 GGGCATTAGTCCCGGTTC 57.446 61.111 0.00 0.00 33.43 3.62
99 100 1.271379 CGGGACTAATGGGGGCATTAG 60.271 57.143 2.11 2.11 45.68 1.73
100 101 0.768622 CGGGACTAATGGGGGCATTA 59.231 55.000 0.00 0.00 0.00 1.90
101 102 1.536676 CGGGACTAATGGGGGCATT 59.463 57.895 0.00 0.00 0.00 3.56
102 103 2.460853 CCGGGACTAATGGGGGCAT 61.461 63.158 0.00 0.00 0.00 4.40
103 104 3.093835 CCGGGACTAATGGGGGCA 61.094 66.667 0.00 0.00 0.00 5.36
104 105 2.619941 GAACCGGGACTAATGGGGGC 62.620 65.000 6.32 0.00 0.00 5.80
105 106 0.986550 AGAACCGGGACTAATGGGGG 60.987 60.000 6.32 0.00 0.00 5.40
106 107 0.180406 CAGAACCGGGACTAATGGGG 59.820 60.000 6.32 0.00 0.00 4.96
107 108 0.180406 CCAGAACCGGGACTAATGGG 59.820 60.000 6.32 0.00 0.00 4.00
108 109 1.200519 TCCAGAACCGGGACTAATGG 58.799 55.000 6.32 5.20 0.00 3.16
115 116 2.055299 GTTCAGTCCAGAACCGGGA 58.945 57.895 6.32 0.00 41.52 5.14
116 117 4.695560 GTTCAGTCCAGAACCGGG 57.304 61.111 6.32 0.00 41.52 5.73
120 121 1.694696 AGTCCCAGTTCAGTCCAGAAC 59.305 52.381 0.00 0.00 46.35 3.01
121 122 2.103153 AGTCCCAGTTCAGTCCAGAA 57.897 50.000 0.00 0.00 0.00 3.02
122 123 2.992847 TAGTCCCAGTTCAGTCCAGA 57.007 50.000 0.00 0.00 0.00 3.86
123 124 3.369892 CCATTAGTCCCAGTTCAGTCCAG 60.370 52.174 0.00 0.00 0.00 3.86
124 125 2.571653 CCATTAGTCCCAGTTCAGTCCA 59.428 50.000 0.00 0.00 0.00 4.02
125 126 2.092914 CCCATTAGTCCCAGTTCAGTCC 60.093 54.545 0.00 0.00 0.00 3.85
126 127 2.681097 GCCCATTAGTCCCAGTTCAGTC 60.681 54.545 0.00 0.00 0.00 3.51
127 128 1.282157 GCCCATTAGTCCCAGTTCAGT 59.718 52.381 0.00 0.00 0.00 3.41
128 129 1.561542 AGCCCATTAGTCCCAGTTCAG 59.438 52.381 0.00 0.00 0.00 3.02
129 130 1.668826 AGCCCATTAGTCCCAGTTCA 58.331 50.000 0.00 0.00 0.00 3.18
130 131 3.542648 GTTAGCCCATTAGTCCCAGTTC 58.457 50.000 0.00 0.00 0.00 3.01
131 132 2.241430 GGTTAGCCCATTAGTCCCAGTT 59.759 50.000 0.00 0.00 0.00 3.16
132 133 1.844497 GGTTAGCCCATTAGTCCCAGT 59.156 52.381 0.00 0.00 0.00 4.00
133 134 2.640316 GGTTAGCCCATTAGTCCCAG 57.360 55.000 0.00 0.00 0.00 4.45
146 147 4.484872 GGTCCAGGCCGGGTTAGC 62.485 72.222 22.25 9.46 34.36 3.09
147 148 2.132089 TTTGGTCCAGGCCGGGTTAG 62.132 60.000 22.25 0.00 34.36 2.34
148 149 2.132089 CTTTGGTCCAGGCCGGGTTA 62.132 60.000 22.25 6.62 34.36 2.85
149 150 3.503839 TTTGGTCCAGGCCGGGTT 61.504 61.111 22.25 0.00 34.36 4.11
150 151 3.966543 CTTTGGTCCAGGCCGGGT 61.967 66.667 22.25 0.00 34.36 5.28
155 156 2.361737 GAGGGCTTTGGTCCAGGC 60.362 66.667 9.58 9.58 40.27 4.85
156 157 0.113190 AAAGAGGGCTTTGGTCCAGG 59.887 55.000 0.00 0.00 42.54 4.45
157 158 1.889170 GAAAAGAGGGCTTTGGTCCAG 59.111 52.381 0.00 0.00 43.32 3.86
158 159 1.499007 AGAAAAGAGGGCTTTGGTCCA 59.501 47.619 0.00 0.00 43.32 4.02
159 160 2.294449 AGAAAAGAGGGCTTTGGTCC 57.706 50.000 0.00 0.00 43.32 4.46
160 161 4.022413 AGTAGAAAAGAGGGCTTTGGTC 57.978 45.455 0.00 0.00 43.32 4.02
161 162 4.597940 ACTAGTAGAAAAGAGGGCTTTGGT 59.402 41.667 3.59 0.00 43.32 3.67
162 163 4.938226 CACTAGTAGAAAAGAGGGCTTTGG 59.062 45.833 3.59 0.00 43.32 3.28
163 164 5.639931 GTCACTAGTAGAAAAGAGGGCTTTG 59.360 44.000 3.59 0.00 43.32 2.77
164 165 5.280062 GGTCACTAGTAGAAAAGAGGGCTTT 60.280 44.000 3.59 0.00 45.95 3.51
165 166 4.223255 GGTCACTAGTAGAAAAGAGGGCTT 59.777 45.833 3.59 0.00 35.37 4.35
166 167 3.770388 GGTCACTAGTAGAAAAGAGGGCT 59.230 47.826 3.59 0.00 0.00 5.19
167 168 3.770388 AGGTCACTAGTAGAAAAGAGGGC 59.230 47.826 3.59 0.00 0.00 5.19
168 169 5.265989 AGAGGTCACTAGTAGAAAAGAGGG 58.734 45.833 3.59 0.00 0.00 4.30
169 170 6.038936 GCTAGAGGTCACTAGTAGAAAAGAGG 59.961 46.154 3.59 0.00 41.10 3.69
170 171 6.600032 TGCTAGAGGTCACTAGTAGAAAAGAG 59.400 42.308 3.59 0.00 41.10 2.85
171 172 6.482524 TGCTAGAGGTCACTAGTAGAAAAGA 58.517 40.000 3.59 0.00 41.10 2.52
172 173 6.761099 TGCTAGAGGTCACTAGTAGAAAAG 57.239 41.667 3.59 0.00 41.10 2.27
178 179 4.515361 GTCACTGCTAGAGGTCACTAGTA 58.485 47.826 0.00 0.00 41.10 1.82
179 180 3.349022 GTCACTGCTAGAGGTCACTAGT 58.651 50.000 0.00 0.00 41.10 2.57
180 181 2.353269 CGTCACTGCTAGAGGTCACTAG 59.647 54.545 0.00 0.00 41.70 2.57
181 182 2.027469 TCGTCACTGCTAGAGGTCACTA 60.027 50.000 0.00 0.00 0.00 2.74
182 183 1.169577 CGTCACTGCTAGAGGTCACT 58.830 55.000 0.00 0.00 0.00 3.41
183 184 1.135632 GTCGTCACTGCTAGAGGTCAC 60.136 57.143 0.00 0.00 0.00 3.67
184 185 1.166129 GTCGTCACTGCTAGAGGTCA 58.834 55.000 0.00 0.00 0.00 4.02
185 186 0.097325 CGTCGTCACTGCTAGAGGTC 59.903 60.000 0.00 0.00 0.00 3.85
186 187 1.306642 CCGTCGTCACTGCTAGAGGT 61.307 60.000 0.00 0.00 0.00 3.85
187 188 1.306642 ACCGTCGTCACTGCTAGAGG 61.307 60.000 0.00 0.00 0.00 3.69
191 192 1.284715 CACACCGTCGTCACTGCTA 59.715 57.895 0.00 0.00 0.00 3.49
199 200 2.420043 CAACCTCCACACCGTCGT 59.580 61.111 0.00 0.00 0.00 4.34
534 538 0.687354 ACCAAACAGACCTCGCATCT 59.313 50.000 0.00 0.00 0.00 2.90
575 579 3.519510 CTCCTAACCAGTTGATGAAGGGA 59.480 47.826 0.00 0.00 0.00 4.20
696 703 2.363795 CCGGGCCTCTGTACCTGA 60.364 66.667 0.84 0.00 33.88 3.86
700 707 3.468140 GGACCCGGGCCTCTGTAC 61.468 72.222 24.08 0.00 0.00 2.90
711 718 0.032416 TAGGAAAGGAGGAGGACCCG 60.032 60.000 0.00 0.00 40.87 5.28
727 735 5.975344 GGTTTCGTTCCTTCTTTTGTTTAGG 59.025 40.000 0.00 0.00 0.00 2.69
733 741 4.893424 TGAGGTTTCGTTCCTTCTTTTG 57.107 40.909 0.00 0.00 35.20 2.44
738 746 2.000447 CGGATGAGGTTTCGTTCCTTC 59.000 52.381 0.00 0.00 35.20 3.46
739 747 1.346722 ACGGATGAGGTTTCGTTCCTT 59.653 47.619 0.00 0.00 35.20 3.36
741 749 2.660189 TACGGATGAGGTTTCGTTCC 57.340 50.000 0.00 0.00 37.10 3.62
742 750 4.743644 CCTTATACGGATGAGGTTTCGTTC 59.256 45.833 10.36 0.00 34.72 3.95
746 754 4.338379 AGCCTTATACGGATGAGGTTTC 57.662 45.455 19.08 3.60 40.31 2.78
908 928 2.585247 GCGGATCGGTGGTGCTAC 60.585 66.667 1.93 0.00 0.00 3.58
1704 1800 0.733566 CGGTGCCACAATGCATTGAC 60.734 55.000 38.99 27.21 44.30 3.18
1846 1943 0.114168 CCACCCCCTTCATTGGAACA 59.886 55.000 0.00 0.00 0.00 3.18
1854 1951 3.170362 CAAGCTCCACCCCCTTCA 58.830 61.111 0.00 0.00 0.00 3.02
1898 2016 6.721318 TCACCATCATCATCATCATCATCAT 58.279 36.000 0.00 0.00 0.00 2.45
1899 2017 6.121776 TCACCATCATCATCATCATCATCA 57.878 37.500 0.00 0.00 0.00 3.07
1900 2018 6.823689 TCATCACCATCATCATCATCATCATC 59.176 38.462 0.00 0.00 0.00 2.92
1901 2019 6.721318 TCATCACCATCATCATCATCATCAT 58.279 36.000 0.00 0.00 0.00 2.45
1902 2020 6.121776 TCATCACCATCATCATCATCATCA 57.878 37.500 0.00 0.00 0.00 3.07
1903 2021 6.823689 TCATCATCACCATCATCATCATCATC 59.176 38.462 0.00 0.00 0.00 2.92
1904 2022 6.721318 TCATCATCACCATCATCATCATCAT 58.279 36.000 0.00 0.00 0.00 2.45
1905 2023 6.121776 TCATCATCACCATCATCATCATCA 57.878 37.500 0.00 0.00 0.00 3.07
1906 2024 6.823689 TCATCATCATCACCATCATCATCATC 59.176 38.462 0.00 0.00 0.00 2.92
1907 2025 6.721318 TCATCATCATCACCATCATCATCAT 58.279 36.000 0.00 0.00 0.00 2.45
1908 2026 6.121776 TCATCATCATCACCATCATCATCA 57.878 37.500 0.00 0.00 0.00 3.07
1909 2027 6.823689 TCATCATCATCATCACCATCATCATC 59.176 38.462 0.00 0.00 0.00 2.92
1910 2028 6.721318 TCATCATCATCATCACCATCATCAT 58.279 36.000 0.00 0.00 0.00 2.45
1911 2029 6.121776 TCATCATCATCATCACCATCATCA 57.878 37.500 0.00 0.00 0.00 3.07
1912 2030 5.586643 CCTCATCATCATCATCACCATCATC 59.413 44.000 0.00 0.00 0.00 2.92
2038 2208 2.223044 GCTGCTTTCGATAAAACCTCGG 60.223 50.000 0.00 0.00 36.78 4.63
2296 2466 1.080772 CAGTAGCGTCAACGGCAGA 60.081 57.895 4.54 0.00 40.23 4.26
2585 2770 0.947244 CTGTGACAAGGGTGCACTTC 59.053 55.000 17.98 9.64 34.69 3.01
3069 3356 4.096382 GGGTCAAAACACATATAGGCACAG 59.904 45.833 0.00 0.00 0.00 3.66
3106 3393 6.489022 GGTACAAAAGTAACTGTGGGAAGAAT 59.511 38.462 0.00 0.00 0.00 2.40
3166 3465 7.666063 TCTAGATTCTGAAGATCAATGTCCA 57.334 36.000 0.00 0.00 0.00 4.02
3210 3509 3.451894 CCTTGACATTGCCGGGCC 61.452 66.667 17.97 0.00 0.00 5.80
3252 3551 2.445145 TGGTCAATTGGAGGAAAGACCA 59.555 45.455 5.42 7.93 44.42 4.02
3446 3753 1.303643 GGTAGCACCTGCAGCCTTT 60.304 57.895 8.66 0.00 45.16 3.11
3953 4332 1.472276 CGCTCGCACGTAGATGGTTC 61.472 60.000 0.00 0.00 0.00 3.62
4491 4871 1.026182 TGGCATGAGCATTGTCGACC 61.026 55.000 14.12 0.00 44.61 4.79
4649 5029 3.435275 AGTGAGTTGCTGAGAGGACATA 58.565 45.455 0.00 0.00 0.00 2.29
4702 5084 8.915036 CCATTCTAACTAATCTGTAGGTGTAGT 58.085 37.037 0.00 0.00 0.00 2.73
4741 5182 1.970640 ACCCCATTTTTCAGCTTGACC 59.029 47.619 0.00 0.00 0.00 4.02
4755 5196 2.037251 GTCACATATCTGCGTACCCCAT 59.963 50.000 0.00 0.00 0.00 4.00
4816 5257 9.764363 CTTCCACAGCTATATAATCACTTACAA 57.236 33.333 0.00 0.00 0.00 2.41
4817 5258 8.367911 CCTTCCACAGCTATATAATCACTTACA 58.632 37.037 0.00 0.00 0.00 2.41
4818 5259 7.819900 CCCTTCCACAGCTATATAATCACTTAC 59.180 40.741 0.00 0.00 0.00 2.34
4819 5260 7.733047 TCCCTTCCACAGCTATATAATCACTTA 59.267 37.037 0.00 0.00 0.00 2.24
4820 5261 6.558775 TCCCTTCCACAGCTATATAATCACTT 59.441 38.462 0.00 0.00 0.00 3.16
4821 5262 6.084738 TCCCTTCCACAGCTATATAATCACT 58.915 40.000 0.00 0.00 0.00 3.41
4822 5263 6.360370 TCCCTTCCACAGCTATATAATCAC 57.640 41.667 0.00 0.00 0.00 3.06
4823 5264 6.520742 GCTTCCCTTCCACAGCTATATAATCA 60.521 42.308 0.00 0.00 0.00 2.57
4824 5265 5.877564 GCTTCCCTTCCACAGCTATATAATC 59.122 44.000 0.00 0.00 0.00 1.75
4825 5266 5.310594 TGCTTCCCTTCCACAGCTATATAAT 59.689 40.000 0.00 0.00 33.15 1.28
4826 5267 4.658435 TGCTTCCCTTCCACAGCTATATAA 59.342 41.667 0.00 0.00 33.15 0.98
4827 5268 4.231273 TGCTTCCCTTCCACAGCTATATA 58.769 43.478 0.00 0.00 33.15 0.86
4828 5269 3.048600 TGCTTCCCTTCCACAGCTATAT 58.951 45.455 0.00 0.00 33.15 0.86
4829 5270 2.477245 TGCTTCCCTTCCACAGCTATA 58.523 47.619 0.00 0.00 33.15 1.31
4830 5271 1.289160 TGCTTCCCTTCCACAGCTAT 58.711 50.000 0.00 0.00 33.15 2.97
4831 5272 1.289160 ATGCTTCCCTTCCACAGCTA 58.711 50.000 0.00 0.00 33.15 3.32
4832 5273 1.289160 TATGCTTCCCTTCCACAGCT 58.711 50.000 0.00 0.00 33.15 4.24
4833 5274 2.355010 ATATGCTTCCCTTCCACAGC 57.645 50.000 0.00 0.00 0.00 4.40
4834 5275 3.633986 GGAAATATGCTTCCCTTCCACAG 59.366 47.826 0.00 0.00 39.26 3.66
4835 5276 3.631250 GGAAATATGCTTCCCTTCCACA 58.369 45.455 0.00 0.00 39.26 4.17
4843 5284 2.755952 AGGTGGGGAAATATGCTTCC 57.244 50.000 0.00 0.00 43.69 3.46
4844 5285 3.889538 GGTAAGGTGGGGAAATATGCTTC 59.110 47.826 0.00 0.00 0.00 3.86
4845 5286 3.687264 CGGTAAGGTGGGGAAATATGCTT 60.687 47.826 0.00 0.00 0.00 3.91
4846 5287 2.158667 CGGTAAGGTGGGGAAATATGCT 60.159 50.000 0.00 0.00 0.00 3.79
4847 5288 2.227194 CGGTAAGGTGGGGAAATATGC 58.773 52.381 0.00 0.00 0.00 3.14
4848 5289 3.570912 ACGGTAAGGTGGGGAAATATG 57.429 47.619 0.00 0.00 0.00 1.78
4849 5290 3.392285 GGTACGGTAAGGTGGGGAAATAT 59.608 47.826 0.00 0.00 0.00 1.28
4850 5291 2.771372 GGTACGGTAAGGTGGGGAAATA 59.229 50.000 0.00 0.00 0.00 1.40
4851 5292 1.561076 GGTACGGTAAGGTGGGGAAAT 59.439 52.381 0.00 0.00 0.00 2.17
4852 5293 0.983467 GGTACGGTAAGGTGGGGAAA 59.017 55.000 0.00 0.00 0.00 3.13
4853 5294 0.178909 TGGTACGGTAAGGTGGGGAA 60.179 55.000 0.00 0.00 0.00 3.97
4854 5295 0.178909 TTGGTACGGTAAGGTGGGGA 60.179 55.000 0.00 0.00 0.00 4.81
4855 5296 0.036105 GTTGGTACGGTAAGGTGGGG 60.036 60.000 0.00 0.00 0.00 4.96
4856 5297 0.686224 TGTTGGTACGGTAAGGTGGG 59.314 55.000 0.00 0.00 0.00 4.61
4857 5298 1.608801 GGTGTTGGTACGGTAAGGTGG 60.609 57.143 0.00 0.00 0.00 4.61
4858 5299 1.345415 AGGTGTTGGTACGGTAAGGTG 59.655 52.381 0.00 0.00 0.00 4.00
4859 5300 1.620323 GAGGTGTTGGTACGGTAAGGT 59.380 52.381 0.00 0.00 0.00 3.50
4860 5301 1.066645 GGAGGTGTTGGTACGGTAAGG 60.067 57.143 0.00 0.00 0.00 2.69
4861 5302 1.066645 GGGAGGTGTTGGTACGGTAAG 60.067 57.143 0.00 0.00 0.00 2.34
4862 5303 0.975887 GGGAGGTGTTGGTACGGTAA 59.024 55.000 0.00 0.00 0.00 2.85
4863 5304 0.114954 AGGGAGGTGTTGGTACGGTA 59.885 55.000 0.00 0.00 0.00 4.02
4864 5305 0.765519 AAGGGAGGTGTTGGTACGGT 60.766 55.000 0.00 0.00 0.00 4.83
4865 5306 0.399075 AAAGGGAGGTGTTGGTACGG 59.601 55.000 0.00 0.00 0.00 4.02
4866 5307 1.519408 CAAAGGGAGGTGTTGGTACG 58.481 55.000 0.00 0.00 0.00 3.67
4867 5308 1.244816 GCAAAGGGAGGTGTTGGTAC 58.755 55.000 0.00 0.00 0.00 3.34
4868 5309 0.847373 TGCAAAGGGAGGTGTTGGTA 59.153 50.000 0.00 0.00 0.00 3.25
4869 5310 0.468029 CTGCAAAGGGAGGTGTTGGT 60.468 55.000 0.00 0.00 0.00 3.67
4870 5311 0.178992 TCTGCAAAGGGAGGTGTTGG 60.179 55.000 0.00 0.00 32.55 3.77
4871 5312 0.954452 GTCTGCAAAGGGAGGTGTTG 59.046 55.000 0.00 0.00 32.55 3.33
4872 5313 0.535102 CGTCTGCAAAGGGAGGTGTT 60.535 55.000 0.00 0.00 32.55 3.32
4873 5314 1.071471 CGTCTGCAAAGGGAGGTGT 59.929 57.895 0.00 0.00 32.55 4.16
4874 5315 0.250295 TTCGTCTGCAAAGGGAGGTG 60.250 55.000 0.00 0.00 32.55 4.00
4875 5316 0.250338 GTTCGTCTGCAAAGGGAGGT 60.250 55.000 0.00 0.00 32.55 3.85
4876 5317 0.035458 AGTTCGTCTGCAAAGGGAGG 59.965 55.000 0.00 0.00 32.55 4.30
4877 5318 2.737252 GTTAGTTCGTCTGCAAAGGGAG 59.263 50.000 0.00 0.00 0.00 4.30
4878 5319 2.103432 TGTTAGTTCGTCTGCAAAGGGA 59.897 45.455 0.00 0.00 0.00 4.20
4879 5320 2.489971 TGTTAGTTCGTCTGCAAAGGG 58.510 47.619 0.00 0.00 0.00 3.95
4880 5321 5.671329 GCTTATGTTAGTTCGTCTGCAAAGG 60.671 44.000 0.00 0.00 0.00 3.11
4881 5322 5.107104 TGCTTATGTTAGTTCGTCTGCAAAG 60.107 40.000 0.00 0.00 0.00 2.77
4882 5323 4.752604 TGCTTATGTTAGTTCGTCTGCAAA 59.247 37.500 0.00 0.00 0.00 3.68
4883 5324 4.311606 TGCTTATGTTAGTTCGTCTGCAA 58.688 39.130 0.00 0.00 0.00 4.08
4884 5325 3.920446 TGCTTATGTTAGTTCGTCTGCA 58.080 40.909 0.00 0.00 0.00 4.41
4885 5326 5.332656 GCTATGCTTATGTTAGTTCGTCTGC 60.333 44.000 0.00 0.00 0.00 4.26
4886 5327 5.748630 TGCTATGCTTATGTTAGTTCGTCTG 59.251 40.000 0.00 0.00 0.00 3.51
4887 5328 5.902681 TGCTATGCTTATGTTAGTTCGTCT 58.097 37.500 0.00 0.00 0.00 4.18
4888 5329 6.583912 TTGCTATGCTTATGTTAGTTCGTC 57.416 37.500 0.00 0.00 0.00 4.20
4889 5330 6.978343 TTTGCTATGCTTATGTTAGTTCGT 57.022 33.333 0.00 0.00 0.00 3.85
4890 5331 8.841444 AATTTTGCTATGCTTATGTTAGTTCG 57.159 30.769 0.00 0.00 0.00 3.95
4891 5332 9.787532 TGAATTTTGCTATGCTTATGTTAGTTC 57.212 29.630 0.00 0.00 0.00 3.01
4893 5334 9.740239 CATGAATTTTGCTATGCTTATGTTAGT 57.260 29.630 0.00 0.00 0.00 2.24
4894 5335 9.955208 TCATGAATTTTGCTATGCTTATGTTAG 57.045 29.630 0.00 0.00 0.00 2.34
4895 5336 9.734620 GTCATGAATTTTGCTATGCTTATGTTA 57.265 29.630 0.00 0.00 0.00 2.41
4896 5337 8.252417 TGTCATGAATTTTGCTATGCTTATGTT 58.748 29.630 0.00 0.00 0.00 2.71
4897 5338 7.774134 TGTCATGAATTTTGCTATGCTTATGT 58.226 30.769 0.00 0.00 0.00 2.29
4898 5339 8.812147 ATGTCATGAATTTTGCTATGCTTATG 57.188 30.769 0.00 0.00 0.00 1.90
4913 5354 9.797642 TGCTCTTGGTATTAATATGTCATGAAT 57.202 29.630 0.00 0.00 0.00 2.57
4914 5355 9.276590 CTGCTCTTGGTATTAATATGTCATGAA 57.723 33.333 0.00 0.00 0.00 2.57
4915 5356 7.388776 GCTGCTCTTGGTATTAATATGTCATGA 59.611 37.037 0.00 0.00 0.00 3.07
4916 5357 7.389884 AGCTGCTCTTGGTATTAATATGTCATG 59.610 37.037 0.00 0.00 0.00 3.07
4917 5358 7.456725 AGCTGCTCTTGGTATTAATATGTCAT 58.543 34.615 0.00 0.00 0.00 3.06
4918 5359 6.830912 AGCTGCTCTTGGTATTAATATGTCA 58.169 36.000 0.00 0.00 0.00 3.58
4919 5360 6.370166 GGAGCTGCTCTTGGTATTAATATGTC 59.630 42.308 27.09 2.57 0.00 3.06
4920 5361 6.183361 TGGAGCTGCTCTTGGTATTAATATGT 60.183 38.462 27.09 0.00 0.00 2.29
4921 5362 6.233434 TGGAGCTGCTCTTGGTATTAATATG 58.767 40.000 27.09 0.00 0.00 1.78
4922 5363 6.439636 TGGAGCTGCTCTTGGTATTAATAT 57.560 37.500 27.09 0.00 0.00 1.28
4923 5364 5.887214 TGGAGCTGCTCTTGGTATTAATA 57.113 39.130 27.09 0.00 0.00 0.98
4924 5365 4.778213 TGGAGCTGCTCTTGGTATTAAT 57.222 40.909 27.09 0.00 0.00 1.40
4925 5366 4.261801 GTTGGAGCTGCTCTTGGTATTAA 58.738 43.478 27.09 8.70 0.00 1.40
4926 5367 3.678806 CGTTGGAGCTGCTCTTGGTATTA 60.679 47.826 27.09 3.62 0.00 0.98
4927 5368 2.716217 GTTGGAGCTGCTCTTGGTATT 58.284 47.619 27.09 0.00 0.00 1.89
4928 5369 1.406069 CGTTGGAGCTGCTCTTGGTAT 60.406 52.381 27.09 0.00 0.00 2.73
4929 5370 0.037326 CGTTGGAGCTGCTCTTGGTA 60.037 55.000 27.09 8.04 0.00 3.25
4930 5371 1.302033 CGTTGGAGCTGCTCTTGGT 60.302 57.895 27.09 0.00 0.00 3.67
4931 5372 2.684843 GCGTTGGAGCTGCTCTTGG 61.685 63.158 27.09 15.55 0.00 3.61
4932 5373 1.909141 CTGCGTTGGAGCTGCTCTTG 61.909 60.000 27.09 15.73 38.13 3.02
4933 5374 1.670406 CTGCGTTGGAGCTGCTCTT 60.670 57.895 27.09 0.00 38.13 2.85
4988 5429 1.606668 GGGCATCGATTTTTATCCGCA 59.393 47.619 0.00 0.00 0.00 5.69
4994 5435 2.553079 GCGTTGGGCATCGATTTTTA 57.447 45.000 0.00 0.00 42.87 1.52
5067 5508 4.284234 CCCAAATCTGTCCCAAATTTGAGT 59.716 41.667 19.86 0.00 40.97 3.41
5082 5523 0.404040 TCCGCTTTGGACCCAAATCT 59.596 50.000 13.94 0.00 43.74 2.40
5125 5570 2.701780 GCAGAGGCGGACGAAGAGA 61.702 63.158 0.00 0.00 0.00 3.10
5144 5589 0.607217 CCAGAGAACACATGCAGCCA 60.607 55.000 0.00 0.00 0.00 4.75
5145 5590 1.930908 GCCAGAGAACACATGCAGCC 61.931 60.000 0.00 0.00 0.00 4.85
5152 5597 1.770110 AGGTGGGCCAGAGAACACA 60.770 57.895 6.40 0.00 37.19 3.72
5218 5663 1.536676 CTTGGTGGGTGGGTGAGTT 59.463 57.895 0.00 0.00 0.00 3.01
5270 5716 4.357947 GGTGCACGTCTCCAGCGA 62.358 66.667 11.45 0.00 0.00 4.93
5419 5885 1.062206 GCGTACGCGTTCTAGAGCT 59.938 57.895 26.17 0.00 40.81 4.09
5478 5945 0.033920 TAGCTATCCACGCCATGCAG 59.966 55.000 0.00 0.00 0.00 4.41
5483 5950 1.248486 CTAGCTAGCTATCCACGCCA 58.752 55.000 24.36 1.22 0.00 5.69
5507 5974 0.247655 CATACACATTGACGCGGCAC 60.248 55.000 18.02 3.20 0.00 5.01
5508 5975 0.672091 ACATACACATTGACGCGGCA 60.672 50.000 12.71 12.71 0.00 5.69
5509 5976 0.247655 CACATACACATTGACGCGGC 60.248 55.000 12.47 8.67 0.00 6.53
5510 5977 0.247655 GCACATACACATTGACGCGG 60.248 55.000 12.47 0.00 0.00 6.46
5511 5978 0.721154 AGCACATACACATTGACGCG 59.279 50.000 3.53 3.53 0.00 6.01
5512 5979 2.285834 GCTAGCACATACACATTGACGC 60.286 50.000 10.63 0.00 0.00 5.19
5514 5981 5.896922 CTAGCTAGCACATACACATTGAC 57.103 43.478 18.83 0.00 0.00 3.18
5538 6023 2.561419 GGATGCTCGCCCTTGTATACTA 59.439 50.000 4.17 0.00 0.00 1.82
5539 6024 1.344763 GGATGCTCGCCCTTGTATACT 59.655 52.381 4.17 0.00 0.00 2.12
5544 6029 2.650813 GATCGGATGCTCGCCCTTGT 62.651 60.000 0.00 0.00 0.00 3.16
5572 6057 0.948141 GATGCTAGTCGGATGCTGGC 60.948 60.000 0.00 0.00 40.25 4.85
5593 6078 3.112709 GACGCGTTGGAGCTGGTC 61.113 66.667 15.53 0.00 34.40 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.