Multiple sequence alignment - TraesCS3B01G028900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G028900 chr3B 100.000 6449 0 0 1 6449 12403111 12409559 0.000000e+00 11910.0
1 TraesCS3B01G028900 chr3B 96.936 816 19 4 4661 5475 28104612 28105422 0.000000e+00 1363.0
2 TraesCS3B01G028900 chr3B 93.750 640 32 6 3657 4292 789725708 789726343 0.000000e+00 953.0
3 TraesCS3B01G028900 chr3B 86.630 718 30 19 815 1480 28102348 28103051 0.000000e+00 734.0
4 TraesCS3B01G028900 chr3B 89.614 414 40 2 5054 5467 12419850 12420260 2.060000e-144 523.0
5 TraesCS3B01G028900 chr3B 87.832 452 40 8 5123 5564 12451390 12451836 3.450000e-142 516.0
6 TraesCS3B01G028900 chr3B 87.124 466 31 15 1704 2165 28103050 28103490 9.650000e-138 501.0
7 TraesCS3B01G028900 chr3B 88.406 414 44 2 5054 5467 28108389 28108798 4.490000e-136 496.0
8 TraesCS3B01G028900 chr3B 86.726 452 42 11 5122 5562 28130251 28130695 2.700000e-133 486.0
9 TraesCS3B01G028900 chr3B 91.429 350 28 2 463 811 28093204 28093552 4.520000e-131 479.0
10 TraesCS3B01G028900 chr3B 91.429 350 28 2 463 811 28098000 28098348 4.520000e-131 479.0
11 TraesCS3B01G028900 chr3B 91.429 350 28 2 463 811 28101294 28101642 4.520000e-131 479.0
12 TraesCS3B01G028900 chr3B 84.867 489 48 9 1 463 28084308 28084796 2.720000e-128 470.0
13 TraesCS3B01G028900 chr3B 89.751 361 19 7 5710 6067 12417213 12417558 4.590000e-121 446.0
14 TraesCS3B01G028900 chr3B 92.683 287 21 0 5039 5325 12414744 12415030 1.290000e-111 414.0
15 TraesCS3B01G028900 chr3B 82.192 365 41 15 5710 6067 28105794 28106141 6.320000e-75 292.0
16 TraesCS3B01G028900 chr3B 96.241 133 3 2 5558 5688 28105579 28105711 3.920000e-52 217.0
17 TraesCS3B01G028900 chr3B 91.729 133 9 2 5558 5688 12482375 12482507 3.970000e-42 183.0
18 TraesCS3B01G028900 chr3B 93.043 115 6 2 3559 3672 220754839 220754726 4.000000e-37 167.0
19 TraesCS3B01G028900 chr3B 86.184 152 14 5 1982 2128 28103808 28103957 2.410000e-34 158.0
20 TraesCS3B01G028900 chr3B 97.727 88 2 0 5477 5564 12482253 12482340 1.120000e-32 152.0
21 TraesCS3B01G028900 chr3B 84.667 150 11 8 3171 3311 12405263 12405409 8.720000e-29 139.0
22 TraesCS3B01G028900 chr3B 84.667 150 11 8 2153 2299 12406281 12406421 8.720000e-29 139.0
23 TraesCS3B01G028900 chr3B 88.696 115 9 2 1126 1240 28190204 28190314 3.140000e-28 137.0
24 TraesCS3B01G028900 chr3B 95.238 84 4 0 5481 5564 28105461 28105544 4.060000e-27 134.0
25 TraesCS3B01G028900 chr3B 91.011 89 4 1 5476 5564 28108835 28108919 4.090000e-22 117.0
26 TraesCS3B01G028900 chr3B 88.764 89 6 1 5476 5564 12420297 12420381 8.840000e-19 106.0
27 TraesCS3B01G028900 chr3A 91.049 2011 125 31 815 2783 15783886 15785883 0.000000e+00 2665.0
28 TraesCS3B01G028900 chr3A 93.819 906 35 5 4566 5468 15787435 15788322 0.000000e+00 1343.0
29 TraesCS3B01G028900 chr3A 91.477 833 67 4 2213 3044 17259920 17260749 0.000000e+00 1142.0
30 TraesCS3B01G028900 chr3A 95.097 673 30 3 3659 4330 15786608 15787278 0.000000e+00 1057.0
31 TraesCS3B01G028900 chr3A 92.432 740 34 9 2835 3562 15785877 15786606 0.000000e+00 1037.0
32 TraesCS3B01G028900 chr3A 93.897 639 32 5 3657 4291 34749964 34749329 0.000000e+00 957.0
33 TraesCS3B01G028900 chr3A 84.370 659 63 21 1145 1776 697163580 697162935 1.540000e-170 610.0
34 TraesCS3B01G028900 chr3A 92.640 394 27 2 1930 2321 180050379 180049986 3.370000e-157 566.0
35 TraesCS3B01G028900 chr3A 84.551 602 57 22 1145 1721 5843877 5844467 1.210000e-156 564.0
36 TraesCS3B01G028900 chr3A 89.404 453 28 5 3123 3565 17260886 17261328 2.630000e-153 553.0
37 TraesCS3B01G028900 chr3A 92.492 333 23 2 2683 3015 180049982 180049652 5.850000e-130 475.0
38 TraesCS3B01G028900 chr3A 87.903 372 21 7 5710 6071 15788691 15789048 3.600000e-112 416.0
39 TraesCS3B01G028900 chr3A 86.667 345 34 8 468 811 15782532 15782865 7.900000e-99 372.0
40 TraesCS3B01G028900 chr3A 87.607 234 15 6 4739 4959 15820142 15820374 6.410000e-65 259.0
41 TraesCS3B01G028900 chr3A 81.232 341 45 5 2491 2824 15786494 15786822 2.310000e-64 257.0
42 TraesCS3B01G028900 chr3A 81.500 200 27 5 3111 3307 15476303 15476111 8.660000e-34 156.0
43 TraesCS3B01G028900 chr3A 78.244 262 34 14 2110 2359 15786159 15786409 5.210000e-31 147.0
44 TraesCS3B01G028900 chr3A 95.506 89 4 0 5476 5564 15788362 15788450 6.740000e-30 143.0
45 TraesCS3B01G028900 chr3A 87.097 124 16 0 2119 2242 15476283 15476160 2.420000e-29 141.0
46 TraesCS3B01G028900 chr3A 80.220 182 19 10 1909 2078 15476954 15476778 3.160000e-23 121.0
47 TraesCS3B01G028900 chr3A 79.866 149 17 8 2153 2299 17260934 17261071 5.320000e-16 97.1
48 TraesCS3B01G028900 chrUn 97.870 1033 16 3 4670 5697 35885455 35884424 0.000000e+00 1781.0
49 TraesCS3B01G028900 chrUn 95.745 658 25 3 5792 6449 35884280 35883626 0.000000e+00 1057.0
50 TraesCS3B01G028900 chrUn 88.595 719 62 12 1462 2168 35887599 35886889 0.000000e+00 856.0
51 TraesCS3B01G028900 chrUn 89.786 607 38 13 815 1415 35888186 35887598 0.000000e+00 756.0
52 TraesCS3B01G028900 chrUn 87.823 657 46 16 188 811 35454108 35454763 0.000000e+00 739.0
53 TraesCS3B01G028900 chrUn 91.429 350 28 2 463 811 344946207 344946555 4.520000e-131 479.0
54 TraesCS3B01G028900 chrUn 91.986 287 22 1 5039 5325 35739156 35738871 1.010000e-107 401.0
55 TraesCS3B01G028900 chrUn 91.724 290 23 1 5036 5325 367478093 367478381 1.010000e-107 401.0
56 TraesCS3B01G028900 chrUn 90.722 97 8 1 4329 4425 35885794 35885699 1.890000e-25 128.0
57 TraesCS3B01G028900 chrUn 84.946 93 9 4 1948 2039 35886605 35886517 8.910000e-14 89.8
58 TraesCS3B01G028900 chr3D 95.719 911 34 3 4566 5475 5602753 5601847 0.000000e+00 1461.0
59 TraesCS3B01G028900 chr3D 94.240 868 48 2 1918 2783 5605124 5604257 0.000000e+00 1325.0
60 TraesCS3B01G028900 chr3D 87.788 737 47 9 2838 3565 5604260 5603558 0.000000e+00 822.0
61 TraesCS3B01G028900 chr3D 84.921 756 45 22 894 1596 5605914 5605175 0.000000e+00 701.0
62 TraesCS3B01G028900 chr3D 92.788 416 16 4 5710 6123 5601486 5601083 2.000000e-164 590.0
63 TraesCS3B01G028900 chr3D 90.393 458 25 2 358 814 5607184 5606745 9.320000e-163 584.0
64 TraesCS3B01G028900 chr3D 94.545 330 12 3 6121 6449 5600984 5600660 7.460000e-139 505.0
65 TraesCS3B01G028900 chr3D 91.358 162 12 2 4424 4584 540564889 540564729 3.030000e-53 220.0
66 TraesCS3B01G028900 chr3D 92.308 143 7 4 5558 5697 5601694 5601553 3.940000e-47 200.0
67 TraesCS3B01G028900 chr3D 81.517 211 28 6 3109 3316 5727510 5727712 5.170000e-36 163.0
68 TraesCS3B01G028900 chr3D 89.516 124 13 0 2119 2242 5727531 5727654 2.410000e-34 158.0
69 TraesCS3B01G028900 chr3D 97.753 89 2 0 5476 5564 5601813 5601725 3.110000e-33 154.0
70 TraesCS3B01G028900 chr3D 78.629 248 35 11 2399 2642 5727862 5728095 1.450000e-31 148.0
71 TraesCS3B01G028900 chr3D 91.525 59 5 0 5869 5927 598077081 598077023 1.490000e-11 82.4
72 TraesCS3B01G028900 chr3D 95.745 47 2 0 2323 2369 52195247 52195293 6.930000e-10 76.8
73 TraesCS3B01G028900 chr2B 94.313 633 29 5 3657 4285 76529017 76529646 0.000000e+00 963.0
74 TraesCS3B01G028900 chr2B 91.358 162 7 2 3219 3374 671233483 671233323 1.410000e-51 215.0
75 TraesCS3B01G028900 chr2B 90.798 163 7 2 3219 3374 479000927 479000766 1.820000e-50 211.0
76 TraesCS3B01G028900 chr1A 94.053 639 31 5 3657 4291 50566098 50565463 0.000000e+00 963.0
77 TraesCS3B01G028900 chr1A 91.057 123 7 4 3540 3660 324495710 324495830 5.170000e-36 163.0
78 TraesCS3B01G028900 chr1A 77.987 159 22 7 2203 2357 17536341 17536490 3.200000e-13 87.9
79 TraesCS3B01G028900 chr7B 94.155 633 30 5 3657 4285 116770300 116770929 0.000000e+00 957.0
80 TraesCS3B01G028900 chr7A 94.155 633 30 5 3657 4285 336221774 336222403 0.000000e+00 957.0
81 TraesCS3B01G028900 chr7A 84.370 659 63 22 1145 1776 690597186 690596541 1.540000e-170 610.0
82 TraesCS3B01G028900 chr7A 93.085 188 11 2 2683 2869 649713949 649713763 2.290000e-69 274.0
83 TraesCS3B01G028900 chr7A 91.892 148 12 0 4424 4571 138505569 138505716 2.360000e-49 207.0
84 TraesCS3B01G028900 chr5B 93.740 639 33 5 3657 4291 473527004 473526369 0.000000e+00 952.0
85 TraesCS3B01G028900 chr5B 93.997 633 31 5 3657 4285 705370205 705370834 0.000000e+00 952.0
86 TraesCS3B01G028900 chr5B 92.795 458 22 6 2204 2657 61801129 61800679 0.000000e+00 652.0
87 TraesCS3B01G028900 chr5B 97.952 293 6 0 2365 2657 62305909 62306201 5.770000e-140 508.0
88 TraesCS3B01G028900 chr5B 91.899 358 17 4 3219 3565 49971931 49972287 2.090000e-134 490.0
89 TraesCS3B01G028900 chr5B 90.441 136 5 2 3223 3351 353784128 353783994 8.600000e-39 172.0
90 TraesCS3B01G028900 chr5A 85.281 659 57 23 1145 1776 171559107 171558462 1.520000e-180 643.0
91 TraesCS3B01G028900 chr2A 86.042 480 38 2 1 451 712310565 712310086 7.520000e-134 488.0
92 TraesCS3B01G028900 chr2A 90.608 362 30 2 1 358 769663050 769663411 1.630000e-130 477.0
93 TraesCS3B01G028900 chr2A 90.358 363 32 2 1 360 452311369 452311007 2.100000e-129 473.0
94 TraesCS3B01G028900 chr2A 93.793 145 8 1 4424 4568 79315246 79315103 3.920000e-52 217.0
95 TraesCS3B01G028900 chr2A 93.243 148 9 1 4424 4571 249754477 249754623 3.920000e-52 217.0
96 TraesCS3B01G028900 chr6B 90.962 343 30 1 1980 2321 272817182 272816840 1.640000e-125 460.0
97 TraesCS3B01G028900 chr6B 90.390 333 30 2 2683 3015 272816836 272816506 2.760000e-118 436.0
98 TraesCS3B01G028900 chr6B 90.071 141 6 2 3218 3351 228793121 228793260 6.650000e-40 176.0
99 TraesCS3B01G028900 chr6B 96.226 106 3 1 3562 3666 82018056 82018161 8.600000e-39 172.0
100 TraesCS3B01G028900 chr6B 92.982 114 8 0 3553 3666 51570646 51570533 4.000000e-37 167.0
101 TraesCS3B01G028900 chr6B 91.011 89 6 1 6361 6449 129603800 129603714 1.140000e-22 119.0
102 TraesCS3B01G028900 chr2D 94.000 150 7 2 4424 4572 305517755 305517903 6.510000e-55 226.0
103 TraesCS3B01G028900 chr2D 95.833 48 2 0 2322 2369 41851697 41851744 1.930000e-10 78.7
104 TraesCS3B01G028900 chr2D 97.727 44 1 0 2326 2369 52890094 52890051 6.930000e-10 76.8
105 TraesCS3B01G028900 chr2D 90.909 55 4 1 2316 2369 91334925 91334871 8.970000e-09 73.1
106 TraesCS3B01G028900 chr6D 93.197 147 10 0 4424 4570 93646369 93646223 3.920000e-52 217.0
107 TraesCS3B01G028900 chr6D 92.617 149 10 1 4424 4571 90112256 90112404 5.070000e-51 213.0
108 TraesCS3B01G028900 chr6D 95.327 107 5 0 3557 3663 389141717 389141611 3.090000e-38 171.0
109 TraesCS3B01G028900 chr6D 97.674 43 1 0 2327 2369 56114503 56114545 2.490000e-09 75.0
110 TraesCS3B01G028900 chr6D 97.674 43 1 0 2327 2369 262034766 262034724 2.490000e-09 75.0
111 TraesCS3B01G028900 chr6D 93.023 43 3 0 2327 2369 220151987 220151945 5.400000e-06 63.9
112 TraesCS3B01G028900 chr4B 91.411 163 6 2 3219 3374 62263303 62263142 3.920000e-52 217.0
113 TraesCS3B01G028900 chr4B 90.798 163 7 2 3219 3374 94054402 94054241 1.820000e-50 211.0
114 TraesCS3B01G028900 chr4B 90.798 163 7 2 3219 3374 338888261 338888422 1.820000e-50 211.0
115 TraesCS3B01G028900 chr4B 77.987 159 22 7 2203 2357 62263302 62263153 3.200000e-13 87.9
116 TraesCS3B01G028900 chr4B 77.987 159 22 7 2203 2357 424790949 424790800 3.200000e-13 87.9
117 TraesCS3B01G028900 chr4B 77.358 159 23 7 2203 2357 94054401 94054252 1.490000e-11 82.4
118 TraesCS3B01G028900 chr4B 82.828 99 7 5 2203 2299 55164685 55164595 5.360000e-11 80.5
119 TraesCS3B01G028900 chr4B 82.828 99 7 5 2203 2299 55179728 55179638 5.360000e-11 80.5
120 TraesCS3B01G028900 chr4B 82.828 99 7 5 2203 2299 393835642 393835552 5.360000e-11 80.5
121 TraesCS3B01G028900 chr4B 95.833 48 2 0 2322 2369 243406537 243406584 1.930000e-10 78.7
122 TraesCS3B01G028900 chr4D 92.568 148 9 2 4425 4572 47993943 47993798 1.820000e-50 211.0
123 TraesCS3B01G028900 chr4D 92.568 148 9 2 4425 4570 238640166 238640019 1.820000e-50 211.0
124 TraesCS3B01G028900 chr4D 91.525 59 2 3 2314 2369 206889184 206889126 1.930000e-10 78.7
125 TraesCS3B01G028900 chr4D 97.674 43 1 0 2327 2369 87148118 87148076 2.490000e-09 75.0
126 TraesCS3B01G028900 chr4D 97.674 43 1 0 2327 2369 169889152 169889194 2.490000e-09 75.0
127 TraesCS3B01G028900 chr4D 97.674 43 1 0 2327 2369 272344337 272344379 2.490000e-09 75.0
128 TraesCS3B01G028900 chr7D 94.017 117 4 2 3558 3672 74416693 74416578 2.390000e-39 174.0
129 TraesCS3B01G028900 chr7D 95.833 48 2 0 5870 5917 983575 983528 1.930000e-10 78.7
130 TraesCS3B01G028900 chr7D 95.833 48 2 0 2322 2369 159683427 159683380 1.930000e-10 78.7
131 TraesCS3B01G028900 chr7D 95.833 48 2 0 2322 2369 632967624 632967671 1.930000e-10 78.7
132 TraesCS3B01G028900 chr6A 94.690 113 3 3 3562 3672 325903601 325903490 8.600000e-39 172.0
133 TraesCS3B01G028900 chr5D 94.495 109 4 2 3562 3669 266749452 266749345 4.000000e-37 167.0
134 TraesCS3B01G028900 chr5D 95.745 47 2 0 2323 2369 23495772 23495818 6.930000e-10 76.8
135 TraesCS3B01G028900 chr5D 97.674 43 1 0 2327 2369 346806909 346806951 2.490000e-09 75.0
136 TraesCS3B01G028900 chr4A 90.909 121 9 2 3546 3665 710665502 710665621 1.860000e-35 161.0
137 TraesCS3B01G028900 chr1B 95.833 48 2 0 2322 2369 44977014 44976967 1.930000e-10 78.7
138 TraesCS3B01G028900 chr1D 95.745 47 2 0 2323 2369 30397685 30397731 6.930000e-10 76.8
139 TraesCS3B01G028900 chr1D 97.674 43 1 0 2327 2369 76435850 76435808 2.490000e-09 75.0
140 TraesCS3B01G028900 chr1D 97.674 43 1 0 2327 2369 476686511 476686469 2.490000e-09 75.0
141 TraesCS3B01G028900 chr1D 97.619 42 1 0 2327 2368 144337051 144337010 8.970000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G028900 chr3B 12403111 12409559 6448 False 11910.000000 11910 100.000000 1 6449 1 chr3B.!!$F1 6448
1 TraesCS3B01G028900 chr3B 789725708 789726343 635 False 953.000000 953 93.750000 3657 4292 1 chr3B.!!$F7 635
2 TraesCS3B01G028900 chr3B 28098000 28108919 10919 False 451.818182 1363 90.256364 463 6067 11 chr3B.!!$F11 5604
3 TraesCS3B01G028900 chr3B 12414744 12420381 5637 False 372.250000 523 90.203000 5039 6067 4 chr3B.!!$F9 1028
4 TraesCS3B01G028900 chr3A 34749329 34749964 635 True 957.000000 957 93.897000 3657 4291 1 chr3A.!!$R1 634
5 TraesCS3B01G028900 chr3A 15782532 15789048 6516 False 826.333333 2665 89.105444 468 6071 9 chr3A.!!$F3 5603
6 TraesCS3B01G028900 chr3A 697162935 697163580 645 True 610.000000 610 84.370000 1145 1776 1 chr3A.!!$R2 631
7 TraesCS3B01G028900 chr3A 17259920 17261328 1408 False 597.366667 1142 86.915667 2153 3565 3 chr3A.!!$F4 1412
8 TraesCS3B01G028900 chr3A 5843877 5844467 590 False 564.000000 564 84.551000 1145 1721 1 chr3A.!!$F1 576
9 TraesCS3B01G028900 chr3A 180049652 180050379 727 True 520.500000 566 92.566000 1930 3015 2 chr3A.!!$R4 1085
10 TraesCS3B01G028900 chrUn 35883626 35888186 4560 True 777.966667 1781 91.277333 815 6449 6 chrUn.!!$R2 5634
11 TraesCS3B01G028900 chrUn 35454108 35454763 655 False 739.000000 739 87.823000 188 811 1 chrUn.!!$F1 623
12 TraesCS3B01G028900 chr3D 5600660 5607184 6524 True 704.666667 1461 92.272778 358 6449 9 chr3D.!!$R3 6091
13 TraesCS3B01G028900 chr2B 76529017 76529646 629 False 963.000000 963 94.313000 3657 4285 1 chr2B.!!$F1 628
14 TraesCS3B01G028900 chr1A 50565463 50566098 635 True 963.000000 963 94.053000 3657 4291 1 chr1A.!!$R1 634
15 TraesCS3B01G028900 chr7B 116770300 116770929 629 False 957.000000 957 94.155000 3657 4285 1 chr7B.!!$F1 628
16 TraesCS3B01G028900 chr7A 336221774 336222403 629 False 957.000000 957 94.155000 3657 4285 1 chr7A.!!$F2 628
17 TraesCS3B01G028900 chr7A 690596541 690597186 645 True 610.000000 610 84.370000 1145 1776 1 chr7A.!!$R2 631
18 TraesCS3B01G028900 chr5B 473526369 473527004 635 True 952.000000 952 93.740000 3657 4291 1 chr5B.!!$R3 634
19 TraesCS3B01G028900 chr5B 705370205 705370834 629 False 952.000000 952 93.997000 3657 4285 1 chr5B.!!$F3 628
20 TraesCS3B01G028900 chr5A 171558462 171559107 645 True 643.000000 643 85.281000 1145 1776 1 chr5A.!!$R1 631
21 TraesCS3B01G028900 chr6B 272816506 272817182 676 True 448.000000 460 90.676000 1980 3015 2 chr6B.!!$R3 1035

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.031616 GATGGAGGTCAGGGAGGAGT 60.032 60.000 0.00 0.00 0.00 3.85 F
183 184 0.178891 AGATGGAGGGGCCGATACAT 60.179 55.000 4.84 4.84 40.66 2.29 F
1631 5666 0.320508 AGGCGAAGTTTCCCGAAGTC 60.321 55.000 0.00 0.00 0.00 3.01 F
2784 7185 1.457346 CTGAGGGGCAGCTTGTTTAG 58.543 55.000 0.00 0.00 37.90 1.85 F
3067 7472 0.394938 ACGTAGTGCACATGGTTCCA 59.605 50.000 21.04 0.00 42.51 3.53 F
3662 8139 1.572415 TGGGACGGAGGGAGTACTATT 59.428 52.381 0.00 0.00 0.00 1.73 F
5256 10575 0.391661 ATTCGTGCAACATCTCGGCT 60.392 50.000 0.00 0.00 35.74 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1661 5696 0.460635 GCAACATGCGCCATGGAAAT 60.461 50.000 18.40 1.73 45.16 2.17 R
1755 5792 0.886563 ACAGCAGCATTCAGAAAGGC 59.113 50.000 0.00 2.65 42.40 4.35 R
2834 7235 0.093705 GCAACGCGAGCAGAAACTAG 59.906 55.000 15.93 0.00 0.00 2.57 R
3640 8117 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28 R
4551 9694 2.244252 ACATAGTACTCCCTCCGTTCCT 59.756 50.000 0.00 0.00 0.00 3.36 R
5353 10687 0.251077 AGCAGGAAGAAGTTGCCCAG 60.251 55.000 0.00 0.00 38.58 4.45 R
6417 15396 3.981212 TCGGGAGATATGGCATGATAGA 58.019 45.455 10.98 0.00 0.00 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.107953 GGCAGATGTCGGAGAGGC 59.892 66.667 0.00 0.00 36.95 4.70
18 19 2.279120 GCAGATGTCGGAGAGGCG 60.279 66.667 0.00 0.00 36.95 5.52
20 21 1.809869 CAGATGTCGGAGAGGCGAA 59.190 57.895 0.00 0.00 36.95 4.70
22 23 0.387202 AGATGTCGGAGAGGCGAATG 59.613 55.000 0.00 0.00 36.95 2.67
23 24 0.103208 GATGTCGGAGAGGCGAATGT 59.897 55.000 0.00 0.00 36.95 2.71
24 25 0.179100 ATGTCGGAGAGGCGAATGTG 60.179 55.000 0.00 0.00 36.95 3.21
25 26 1.215647 GTCGGAGAGGCGAATGTGT 59.784 57.895 0.00 0.00 36.95 3.72
26 27 0.389948 GTCGGAGAGGCGAATGTGTT 60.390 55.000 0.00 0.00 36.95 3.32
27 28 0.320374 TCGGAGAGGCGAATGTGTTT 59.680 50.000 0.00 0.00 0.00 2.83
28 29 0.443869 CGGAGAGGCGAATGTGTTTG 59.556 55.000 0.00 0.00 0.00 2.93
29 30 0.804989 GGAGAGGCGAATGTGTTTGG 59.195 55.000 0.00 0.00 0.00 3.28
31 32 2.359900 GAGAGGCGAATGTGTTTGGAT 58.640 47.619 0.00 0.00 0.00 3.41
32 33 2.352960 GAGAGGCGAATGTGTTTGGATC 59.647 50.000 0.00 0.00 0.00 3.36
33 34 1.401905 GAGGCGAATGTGTTTGGATCC 59.598 52.381 4.20 4.20 0.00 3.36
34 35 1.173043 GGCGAATGTGTTTGGATCCA 58.827 50.000 11.44 11.44 0.00 3.41
35 36 1.543802 GGCGAATGTGTTTGGATCCAA 59.456 47.619 23.63 23.63 0.00 3.53
36 37 2.595386 GCGAATGTGTTTGGATCCAAC 58.405 47.619 27.04 20.43 35.46 3.77
37 38 2.671070 GCGAATGTGTTTGGATCCAACC 60.671 50.000 27.04 20.77 35.46 3.77
38 39 2.414029 CGAATGTGTTTGGATCCAACCG 60.414 50.000 27.04 15.91 35.46 4.44
39 40 2.286365 ATGTGTTTGGATCCAACCGT 57.714 45.000 27.04 15.35 35.46 4.83
40 41 1.600023 TGTGTTTGGATCCAACCGTC 58.400 50.000 27.04 16.53 35.46 4.79
43 44 2.095263 GTGTTTGGATCCAACCGTCATG 60.095 50.000 27.04 0.00 35.46 3.07
44 45 1.472480 GTTTGGATCCAACCGTCATGG 59.528 52.381 27.04 0.00 46.41 3.66
49 50 1.077787 TCCAACCGTCATGGATGCC 60.078 57.895 0.00 0.00 41.98 4.40
50 51 1.378382 CCAACCGTCATGGATGCCA 60.378 57.895 0.00 0.00 39.14 4.92
51 52 0.964860 CCAACCGTCATGGATGCCAA 60.965 55.000 0.00 0.00 39.14 4.52
53 54 1.305219 AACCGTCATGGATGCCAACG 61.305 55.000 0.00 4.22 42.00 4.10
54 55 2.404789 CGTCATGGATGCCAACGC 59.595 61.111 0.00 0.00 36.95 4.84
56 57 2.823593 TCATGGATGCCAACGCGG 60.824 61.111 12.47 0.00 36.95 6.46
57 58 2.823593 CATGGATGCCAACGCGGA 60.824 61.111 12.47 0.00 36.95 5.54
58 59 2.514592 ATGGATGCCAACGCGGAG 60.515 61.111 12.47 1.20 36.95 4.63
59 60 3.030168 ATGGATGCCAACGCGGAGA 62.030 57.895 12.47 0.00 36.95 3.71
62 63 2.203070 ATGCCAACGCGGAGATCC 60.203 61.111 12.47 0.00 38.08 3.36
82 83 4.241555 GGCGGTGGCTGGATCGAT 62.242 66.667 0.00 0.00 39.81 3.59
83 84 2.969238 GCGGTGGCTGGATCGATG 60.969 66.667 0.54 0.00 35.83 3.84
84 85 2.280389 CGGTGGCTGGATCGATGG 60.280 66.667 0.54 0.00 0.00 3.51
85 86 2.796193 CGGTGGCTGGATCGATGGA 61.796 63.158 0.54 0.00 0.00 3.41
86 87 1.070445 GGTGGCTGGATCGATGGAG 59.930 63.158 0.54 0.00 0.00 3.86
87 88 1.402896 GGTGGCTGGATCGATGGAGA 61.403 60.000 0.54 0.00 0.00 3.71
88 89 0.033228 GTGGCTGGATCGATGGAGAG 59.967 60.000 0.54 0.00 0.00 3.20
89 90 0.397675 TGGCTGGATCGATGGAGAGT 60.398 55.000 0.54 0.00 0.00 3.24
90 91 1.133482 TGGCTGGATCGATGGAGAGTA 60.133 52.381 0.54 0.00 0.00 2.59
92 93 1.067915 GCTGGATCGATGGAGAGTAGC 60.068 57.143 0.54 0.00 0.00 3.58
95 96 2.625314 TGGATCGATGGAGAGTAGCAAG 59.375 50.000 0.54 0.00 0.00 4.01
98 99 2.302260 TCGATGGAGAGTAGCAAGAGG 58.698 52.381 0.00 0.00 0.00 3.69
99 100 2.028130 CGATGGAGAGTAGCAAGAGGT 58.972 52.381 0.00 0.00 0.00 3.85
101 102 1.561643 TGGAGAGTAGCAAGAGGTGG 58.438 55.000 0.00 0.00 0.00 4.61
102 103 1.077169 TGGAGAGTAGCAAGAGGTGGA 59.923 52.381 0.00 0.00 0.00 4.02
103 104 2.292521 TGGAGAGTAGCAAGAGGTGGAT 60.293 50.000 0.00 0.00 0.00 3.41
104 105 2.102252 GGAGAGTAGCAAGAGGTGGATG 59.898 54.545 0.00 0.00 0.00 3.51
105 106 2.102252 GAGAGTAGCAAGAGGTGGATGG 59.898 54.545 0.00 0.00 0.00 3.51
106 107 2.111384 GAGTAGCAAGAGGTGGATGGA 58.889 52.381 0.00 0.00 0.00 3.41
108 109 1.139853 GTAGCAAGAGGTGGATGGAGG 59.860 57.143 0.00 0.00 0.00 4.30
109 110 0.548682 AGCAAGAGGTGGATGGAGGT 60.549 55.000 0.00 0.00 0.00 3.85
110 111 0.107459 GCAAGAGGTGGATGGAGGTC 60.107 60.000 0.00 0.00 0.00 3.85
112 113 1.209019 CAAGAGGTGGATGGAGGTCAG 59.791 57.143 0.00 0.00 0.00 3.51
113 114 0.326048 AGAGGTGGATGGAGGTCAGG 60.326 60.000 0.00 0.00 0.00 3.86
114 115 1.307343 AGGTGGATGGAGGTCAGGG 60.307 63.158 0.00 0.00 0.00 4.45
115 116 1.306997 GGTGGATGGAGGTCAGGGA 60.307 63.158 0.00 0.00 0.00 4.20
116 117 1.341156 GGTGGATGGAGGTCAGGGAG 61.341 65.000 0.00 0.00 0.00 4.30
117 118 1.003442 TGGATGGAGGTCAGGGAGG 59.997 63.158 0.00 0.00 0.00 4.30
118 119 1.314867 GGATGGAGGTCAGGGAGGA 59.685 63.158 0.00 0.00 0.00 3.71
119 120 0.762461 GGATGGAGGTCAGGGAGGAG 60.762 65.000 0.00 0.00 0.00 3.69
120 121 0.031616 GATGGAGGTCAGGGAGGAGT 60.032 60.000 0.00 0.00 0.00 3.85
121 122 0.326048 ATGGAGGTCAGGGAGGAGTG 60.326 60.000 0.00 0.00 0.00 3.51
122 123 1.687493 GGAGGTCAGGGAGGAGTGG 60.687 68.421 0.00 0.00 0.00 4.00
123 124 1.388531 GAGGTCAGGGAGGAGTGGA 59.611 63.158 0.00 0.00 0.00 4.02
124 125 0.686112 GAGGTCAGGGAGGAGTGGAG 60.686 65.000 0.00 0.00 0.00 3.86
125 126 2.363172 GGTCAGGGAGGAGTGGAGC 61.363 68.421 0.00 0.00 0.00 4.70
126 127 1.610673 GTCAGGGAGGAGTGGAGCA 60.611 63.158 0.00 0.00 0.00 4.26
128 129 1.611851 CAGGGAGGAGTGGAGCAGT 60.612 63.158 0.00 0.00 0.00 4.40
129 130 1.305718 AGGGAGGAGTGGAGCAGTC 60.306 63.158 0.00 0.00 33.45 3.51
130 131 2.716017 GGGAGGAGTGGAGCAGTCG 61.716 68.421 0.00 0.00 34.89 4.18
131 132 2.716017 GGAGGAGTGGAGCAGTCGG 61.716 68.421 0.00 0.00 34.89 4.79
134 135 1.040339 AGGAGTGGAGCAGTCGGATC 61.040 60.000 0.00 0.00 34.89 3.36
138 139 3.837578 GGAGCAGTCGGATCCGTA 58.162 61.111 32.15 17.12 43.24 4.02
140 141 1.359475 GAGCAGTCGGATCCGTACC 59.641 63.158 32.15 20.78 40.74 3.34
141 142 2.073037 GAGCAGTCGGATCCGTACCC 62.073 65.000 32.15 20.22 40.74 3.69
142 143 2.420568 GCAGTCGGATCCGTACCCA 61.421 63.158 32.15 11.40 40.74 4.51
143 144 1.952102 GCAGTCGGATCCGTACCCAA 61.952 60.000 32.15 10.60 40.74 4.12
145 146 0.822164 AGTCGGATCCGTACCCAAAG 59.178 55.000 32.15 2.43 40.74 2.77
146 147 0.533951 GTCGGATCCGTACCCAAAGT 59.466 55.000 32.15 0.00 40.74 2.66
148 149 1.066716 TCGGATCCGTACCCAAAGTTG 60.067 52.381 32.15 0.87 40.74 3.16
149 150 2.010043 CGGATCCGTACCCAAAGTTGG 61.010 57.143 26.35 2.87 40.21 3.77
157 158 3.361977 CCAAAGTTGGCGACGGGG 61.362 66.667 0.00 0.00 42.21 5.73
158 159 3.361977 CAAAGTTGGCGACGGGGG 61.362 66.667 0.00 0.00 0.00 5.40
180 181 1.606601 CGAGATGGAGGGGCCGATA 60.607 63.158 0.00 0.00 40.66 2.92
181 182 1.878656 CGAGATGGAGGGGCCGATAC 61.879 65.000 0.00 0.00 40.66 2.24
182 183 0.832135 GAGATGGAGGGGCCGATACA 60.832 60.000 0.00 0.00 40.66 2.29
183 184 0.178891 AGATGGAGGGGCCGATACAT 60.179 55.000 4.84 4.84 40.66 2.29
184 185 0.693049 GATGGAGGGGCCGATACATT 59.307 55.000 6.54 0.00 40.66 2.71
185 186 0.693049 ATGGAGGGGCCGATACATTC 59.307 55.000 0.00 0.00 40.66 2.67
186 187 0.692756 TGGAGGGGCCGATACATTCA 60.693 55.000 0.00 0.00 40.66 2.57
194 195 2.288666 GCCGATACATTCACCATGTGT 58.711 47.619 0.00 0.00 46.37 3.72
207 212 1.573108 CATGTGTGGGGTAGGTCTCT 58.427 55.000 0.00 0.00 0.00 3.10
237 242 2.005960 CTCGACGGTGGATGGAGGTC 62.006 65.000 0.00 0.00 0.00 3.85
263 268 7.882791 CAGGGTATGGCATATGTCTTGTAATAA 59.117 37.037 10.92 0.00 0.00 1.40
328 333 1.276844 GGAATCGCCGAATTCGCAG 59.723 57.895 22.36 16.83 36.66 5.18
332 337 1.766143 ATCGCCGAATTCGCAGCTTC 61.766 55.000 22.36 5.55 38.18 3.86
349 354 4.796231 CCGCTTCGGGACACCTCG 62.796 72.222 0.00 0.00 44.15 4.63
351 356 4.373116 GCTTCGGGACACCTCGCA 62.373 66.667 0.00 0.00 33.28 5.10
383 414 1.681264 GGTAGCTGGCTGTTTGTTTGT 59.319 47.619 5.25 0.00 0.00 2.83
402 433 6.016024 TGTTTGTGATTCAGATTTTCAGAGGG 60.016 38.462 0.00 0.00 0.00 4.30
429 460 4.792513 ATCCCTGAATCAGAAGCTGAAT 57.207 40.909 12.53 0.00 44.04 2.57
466 497 4.827789 ACCTAAGGGTGGCTATTATCTCA 58.172 43.478 0.00 0.00 45.43 3.27
493 3326 6.142817 GGTAAAAGACGTACTAGTCGACAAA 58.857 40.000 19.50 4.26 45.26 2.83
507 3340 8.475639 ACTAGTCGACAAAATGGTGTCTATATT 58.524 33.333 19.50 0.00 44.79 1.28
652 3486 5.998454 AAAGATGATAGTTTGGCTCGATG 57.002 39.130 0.00 0.00 0.00 3.84
658 3492 5.185454 TGATAGTTTGGCTCGATGTTTGAT 58.815 37.500 0.00 0.00 0.00 2.57
733 3568 3.242413 CGCCATGTCGGATTTTAGTGAAG 60.242 47.826 0.00 0.00 36.56 3.02
756 3591 1.727535 CGCTTCTCTCTCACACTGTCG 60.728 57.143 0.00 0.00 0.00 4.35
794 3629 3.430042 AAGGTGATGAATGAGCACACT 57.570 42.857 0.00 0.00 43.20 3.55
811 3646 0.805614 ACTGACGACGAGGTGATCAG 59.194 55.000 0.00 5.57 42.07 2.90
886 4807 6.719370 ACTTTCACCACTGGCATTTATCTTTA 59.281 34.615 0.00 0.00 0.00 1.85
887 4808 6.509418 TTCACCACTGGCATTTATCTTTAC 57.491 37.500 0.00 0.00 0.00 2.01
889 4810 5.647658 TCACCACTGGCATTTATCTTTACAG 59.352 40.000 0.00 0.00 0.00 2.74
890 4811 4.399303 ACCACTGGCATTTATCTTTACAGC 59.601 41.667 0.00 0.00 0.00 4.40
891 4812 4.202050 CCACTGGCATTTATCTTTACAGCC 60.202 45.833 0.00 0.00 40.93 4.85
892 4813 3.627577 ACTGGCATTTATCTTTACAGCCG 59.372 43.478 0.00 0.00 43.35 5.52
933 4879 1.898574 AAAACCTGCCCTCGCACAG 60.899 57.895 0.00 0.00 41.12 3.66
1114 5095 4.406763 AAGAGGAGAGGCCCGGCT 62.407 66.667 9.86 0.00 37.37 5.52
1201 5182 2.094675 CGCCCATCTTCAAGGTGATTT 58.905 47.619 0.00 0.00 32.75 2.17
1202 5183 2.159338 CGCCCATCTTCAAGGTGATTTG 60.159 50.000 0.00 0.00 32.75 2.32
1204 5185 3.094572 CCCATCTTCAAGGTGATTTGCT 58.905 45.455 0.00 0.00 0.00 3.91
1205 5186 3.129988 CCCATCTTCAAGGTGATTTGCTC 59.870 47.826 0.00 0.00 0.00 4.26
1207 5188 3.507162 TCTTCAAGGTGATTTGCTCCA 57.493 42.857 0.00 0.00 32.48 3.86
1208 5189 4.038271 TCTTCAAGGTGATTTGCTCCAT 57.962 40.909 0.00 0.00 32.48 3.41
1223 5208 2.195567 CCATCCGCCGCATTCCATT 61.196 57.895 0.00 0.00 0.00 3.16
1315 5318 0.825410 AGCTGCTCCTCTCACTGATG 59.175 55.000 0.00 0.00 0.00 3.07
1423 5453 2.798976 TGGCTTGAATTGCAGTTGTC 57.201 45.000 0.00 0.00 0.00 3.18
1481 5512 3.568007 TGTTCTTGGTAGGATGCACAAAC 59.432 43.478 0.00 0.00 0.00 2.93
1514 5546 0.725784 GTCTTGATTGGTTGCGTGCG 60.726 55.000 0.00 0.00 0.00 5.34
1516 5548 1.851021 CTTGATTGGTTGCGTGCGGA 61.851 55.000 0.00 0.00 0.00 5.54
1523 5555 1.353804 GTTGCGTGCGGAAACTGAA 59.646 52.632 0.00 0.00 0.00 3.02
1524 5556 0.928451 GTTGCGTGCGGAAACTGAAC 60.928 55.000 0.00 0.00 0.00 3.18
1540 5572 8.237267 GGAAACTGAACATGTAACATTTAGGAG 58.763 37.037 0.00 0.00 0.00 3.69
1566 5598 5.293079 CAGTTTTCCAATCTAGCTAGTCTGC 59.707 44.000 20.10 6.11 0.00 4.26
1573 5605 6.072618 TCCAATCTAGCTAGTCTGCGTATTAC 60.073 42.308 20.10 0.00 38.13 1.89
1627 5662 2.358247 GCAGGCGAAGTTTCCCGA 60.358 61.111 0.00 0.00 0.00 5.14
1628 5663 1.964373 GCAGGCGAAGTTTCCCGAA 60.964 57.895 0.00 0.00 0.00 4.30
1631 5666 0.320508 AGGCGAAGTTTCCCGAAGTC 60.321 55.000 0.00 0.00 0.00 3.01
1651 5686 7.148507 CGAAGTCTGCTCTGAAATTTAAGTCAT 60.149 37.037 2.35 0.00 0.00 3.06
1661 5696 9.076781 TCTGAAATTTAAGTCATTGGATCAACA 57.923 29.630 2.35 0.00 0.00 3.33
1752 5789 2.368439 TGGAAAAGATGAATGCTCCGG 58.632 47.619 0.00 0.00 0.00 5.14
1755 5792 3.428045 GGAAAAGATGAATGCTCCGGTTG 60.428 47.826 0.00 0.00 0.00 3.77
1867 6217 2.603560 GCTAGGAATCGGTTTTCAGTCG 59.396 50.000 0.00 0.00 0.00 4.18
1884 6234 4.870991 TCAGTCGACTCTGTATCTGTACTG 59.129 45.833 16.96 0.00 36.85 2.74
2078 6477 2.547211 CTGCTGGTGTCTCAAAACTGAG 59.453 50.000 0.00 0.00 37.28 3.35
2114 6514 5.580998 AGGACTCACTTTCCAGTATAGTGA 58.419 41.667 9.25 0.00 44.27 3.41
2144 6544 3.005155 GCCAGTGGATTAGCATTTCCATC 59.995 47.826 15.20 0.91 43.61 3.51
2236 6636 2.893637 CTGTTCTTGGTAGGATGACCG 58.106 52.381 0.00 0.00 42.99 4.79
2476 6877 4.063689 CTGCTGGTATTCTTGCTAGGATG 58.936 47.826 0.00 0.00 0.00 3.51
2480 6881 5.467063 GCTGGTATTCTTGCTAGGATGTTAC 59.533 44.000 0.00 0.00 0.00 2.50
2493 6894 7.145985 GCTAGGATGTTACGATTACTGAATGA 58.854 38.462 0.00 0.00 0.00 2.57
2569 6970 4.761739 GTGACTGAATTTCCAATCCAGTGA 59.238 41.667 0.00 0.00 38.10 3.41
2580 6981 3.430929 CCAATCCAGTGAGTAGTAGTGGC 60.431 52.174 0.00 0.00 38.31 5.01
2616 7017 6.007703 GCTGGTCTCTTACTACATAGGATCT 58.992 44.000 0.00 0.00 0.00 2.75
2633 7034 9.166173 CATAGGATCTTAATTGTTTGTGTCTCA 57.834 33.333 0.00 0.00 0.00 3.27
2652 7053 4.220821 TCTCAAAGCTGAACAGGGTAGTAG 59.779 45.833 3.99 0.00 0.00 2.57
2662 7063 4.942363 ACAGGGTAGTAGTTAGGACTCA 57.058 45.455 0.00 0.00 37.33 3.41
2663 7064 4.857679 ACAGGGTAGTAGTTAGGACTCAG 58.142 47.826 0.00 0.00 37.33 3.35
2679 7080 5.186797 AGGACTCAGTTTCAGACCTATTGAG 59.813 44.000 0.00 0.00 34.70 3.02
2739 7140 8.630037 GGATCTTAATTATTCGTGTCCCAAAAT 58.370 33.333 0.00 0.00 0.00 1.82
2782 7183 4.507969 CTGAGGGGCAGCTTGTTT 57.492 55.556 0.00 0.00 37.90 2.83
2783 7184 3.650647 CTGAGGGGCAGCTTGTTTA 57.349 52.632 0.00 0.00 37.90 2.01
2784 7185 1.457346 CTGAGGGGCAGCTTGTTTAG 58.543 55.000 0.00 0.00 37.90 1.85
2815 7216 9.988815 ATGCTAGTTTAGTTATCTCTTACCATG 57.011 33.333 0.00 0.00 0.00 3.66
2816 7217 8.978472 TGCTAGTTTAGTTATCTCTTACCATGT 58.022 33.333 0.00 0.00 0.00 3.21
2817 7218 9.819267 GCTAGTTTAGTTATCTCTTACCATGTT 57.181 33.333 0.00 0.00 0.00 2.71
2820 7221 9.654663 AGTTTAGTTATCTCTTACCATGTTGAC 57.345 33.333 0.00 0.00 0.00 3.18
2821 7222 8.592998 GTTTAGTTATCTCTTACCATGTTGACG 58.407 37.037 0.00 0.00 0.00 4.35
2822 7223 6.525578 AGTTATCTCTTACCATGTTGACGA 57.474 37.500 0.00 0.00 0.00 4.20
2823 7224 7.113658 AGTTATCTCTTACCATGTTGACGAT 57.886 36.000 0.00 0.00 0.00 3.73
2824 7225 7.556844 AGTTATCTCTTACCATGTTGACGATT 58.443 34.615 0.00 0.00 0.00 3.34
2825 7226 8.041323 AGTTATCTCTTACCATGTTGACGATTT 58.959 33.333 0.00 0.00 0.00 2.17
2826 7227 9.309516 GTTATCTCTTACCATGTTGACGATTTA 57.690 33.333 0.00 0.00 0.00 1.40
2829 7230 8.867112 TCTCTTACCATGTTGACGATTTATAC 57.133 34.615 0.00 0.00 0.00 1.47
2830 7231 8.471609 TCTCTTACCATGTTGACGATTTATACA 58.528 33.333 0.00 0.00 0.00 2.29
2831 7232 9.261180 CTCTTACCATGTTGACGATTTATACAT 57.739 33.333 0.00 0.00 0.00 2.29
2832 7233 9.040939 TCTTACCATGTTGACGATTTATACATG 57.959 33.333 0.00 0.00 43.42 3.21
2833 7234 8.725405 TTACCATGTTGACGATTTATACATGT 57.275 30.769 2.69 2.69 42.68 3.21
2834 7235 7.246674 ACCATGTTGACGATTTATACATGTC 57.753 36.000 0.00 0.00 42.68 3.06
2835 7236 7.047891 ACCATGTTGACGATTTATACATGTCT 58.952 34.615 0.00 0.00 42.68 3.41
2836 7237 8.201464 ACCATGTTGACGATTTATACATGTCTA 58.799 33.333 0.00 0.00 42.68 2.59
2875 7276 9.922305 GTTGCACTCTTGTTATGAACTATATTC 57.078 33.333 0.00 0.00 0.00 1.75
2955 7356 2.098770 GGCATTCAATCTCTGTTCCTGC 59.901 50.000 0.00 0.00 0.00 4.85
3016 7421 9.062524 AGAGTATATATCGATGTAGATGCTTCC 57.937 37.037 8.54 0.00 32.39 3.46
3047 7452 5.450137 CGTAGTAATTGTAGGCTGCTGTAGT 60.450 44.000 3.77 0.00 0.00 2.73
3066 7471 1.997606 GTACGTAGTGCACATGGTTCC 59.002 52.381 21.04 4.09 45.73 3.62
3067 7472 0.394938 ACGTAGTGCACATGGTTCCA 59.605 50.000 21.04 0.00 42.51 3.53
3075 7480 1.956477 GCACATGGTTCCACTGAAACT 59.044 47.619 0.00 0.00 39.06 2.66
3082 7487 2.024414 GTTCCACTGAAACTTGCCTGT 58.976 47.619 0.00 0.00 30.79 4.00
3141 7546 9.665719 TGAAATTAGTATGTGATAAAGCAGTGA 57.334 29.630 0.00 0.00 0.00 3.41
3152 7557 8.955388 TGTGATAAAGCAGTGAATTAGCATTTA 58.045 29.630 8.80 0.00 29.03 1.40
3279 7684 3.421844 GCACCTTGTAGGGTCTTGATTT 58.578 45.455 0.00 0.00 40.58 2.17
3297 7702 1.707632 TTGTTGTGTGTGCAAACTGC 58.292 45.000 8.83 1.94 45.29 4.40
3332 7746 3.301274 AGGACCCAATCTAGTCTGTAGC 58.699 50.000 0.00 0.00 33.39 3.58
3408 7822 4.527816 TGCCATTTGCTCTGAAATTTAGGT 59.472 37.500 0.00 0.00 42.00 3.08
3415 7829 4.883585 TGCTCTGAAATTTAGGTGGCATAG 59.116 41.667 0.00 0.00 0.00 2.23
3433 7847 5.359756 GCATAGTGTCAGTGGATCAACATA 58.640 41.667 2.34 0.00 0.00 2.29
3435 7849 6.073385 GCATAGTGTCAGTGGATCAACATATG 60.073 42.308 2.34 0.00 0.00 1.78
3436 7850 4.194640 AGTGTCAGTGGATCAACATATGC 58.805 43.478 2.34 0.00 0.00 3.14
3437 7851 4.080695 AGTGTCAGTGGATCAACATATGCT 60.081 41.667 2.34 0.00 0.00 3.79
3438 7852 5.129320 AGTGTCAGTGGATCAACATATGCTA 59.871 40.000 2.34 0.00 0.00 3.49
3485 7958 2.828877 TGTTAACTGTTGGTGTCTCGG 58.171 47.619 7.22 0.00 0.00 4.63
3526 7999 8.443953 AGTTATGACTGAATTTCCAATCTAGC 57.556 34.615 0.00 0.00 33.99 3.42
3535 8008 6.042781 TGAATTTCCAATCTAGCGGGTAGTAT 59.957 38.462 13.42 4.24 0.00 2.12
3567 8044 9.998106 TGCTATTTTAGATTGTCTATTACTCCC 57.002 33.333 0.00 0.00 0.00 4.30
3571 8048 6.896021 TTAGATTGTCTATTACTCCCTCCG 57.104 41.667 0.00 0.00 0.00 4.63
3572 8049 4.805744 AGATTGTCTATTACTCCCTCCGT 58.194 43.478 0.00 0.00 0.00 4.69
3573 8050 4.828387 AGATTGTCTATTACTCCCTCCGTC 59.172 45.833 0.00 0.00 0.00 4.79
3574 8051 2.941480 TGTCTATTACTCCCTCCGTCC 58.059 52.381 0.00 0.00 0.00 4.79
3575 8052 2.237643 GTCTATTACTCCCTCCGTCCC 58.762 57.143 0.00 0.00 0.00 4.46
3576 8053 1.854939 TCTATTACTCCCTCCGTCCCA 59.145 52.381 0.00 0.00 0.00 4.37
3577 8054 2.245546 TCTATTACTCCCTCCGTCCCAA 59.754 50.000 0.00 0.00 0.00 4.12
3578 8055 1.961133 ATTACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3579 8056 1.732117 TTACTCCCTCCGTCCCAAAA 58.268 50.000 0.00 0.00 0.00 2.44
3580 8057 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3581 8058 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3582 8059 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3583 8060 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3584 8061 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3585 8062 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3586 8063 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
3587 8064 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
3588 8065 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
3589 8066 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
3590 8067 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
3591 8068 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3592 8069 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
3593 8070 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
3594 8071 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
3595 8072 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
3596 8073 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
3597 8074 6.605594 TCCCAAAATAAGTGACTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
3598 8075 7.776030 TCCCAAAATAAGTGACTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
3599 8076 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
3600 8077 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
3603 8080 9.490379 AAATAAGTGACTCAACTTTGTACTAGG 57.510 33.333 0.00 0.00 40.77 3.02
3604 8081 4.884247 AGTGACTCAACTTTGTACTAGGC 58.116 43.478 0.00 0.00 0.00 3.93
3605 8082 4.589374 AGTGACTCAACTTTGTACTAGGCT 59.411 41.667 0.00 0.00 0.00 4.58
3606 8083 5.070580 AGTGACTCAACTTTGTACTAGGCTT 59.929 40.000 0.00 0.00 0.00 4.35
3607 8084 6.267014 AGTGACTCAACTTTGTACTAGGCTTA 59.733 38.462 0.00 0.00 0.00 3.09
3608 8085 6.586844 GTGACTCAACTTTGTACTAGGCTTAG 59.413 42.308 0.48 0.48 0.00 2.18
3609 8086 6.267014 TGACTCAACTTTGTACTAGGCTTAGT 59.733 38.462 13.56 13.56 42.66 2.24
3610 8087 7.449395 TGACTCAACTTTGTACTAGGCTTAGTA 59.551 37.037 11.42 11.42 40.55 1.82
3623 8100 8.641498 ACTAGGCTTAGTACAAAGTTAGTACA 57.359 34.615 6.74 0.00 43.24 2.90
3624 8101 9.082313 ACTAGGCTTAGTACAAAGTTAGTACAA 57.918 33.333 6.74 0.00 43.24 2.41
3625 8102 9.918630 CTAGGCTTAGTACAAAGTTAGTACAAA 57.081 33.333 0.00 0.00 43.24 2.83
3626 8103 8.599055 AGGCTTAGTACAAAGTTAGTACAAAC 57.401 34.615 6.30 0.00 43.24 2.93
3627 8104 8.427276 AGGCTTAGTACAAAGTTAGTACAAACT 58.573 33.333 6.30 0.00 43.24 2.66
3629 8106 9.859692 GCTTAGTACAAAGTTAGTACAAACTTG 57.140 33.333 2.97 0.00 46.40 3.16
3633 8110 9.310716 AGTACAAAGTTAGTACAAACTTGAGTC 57.689 33.333 2.97 0.00 46.40 3.36
3634 8111 9.090692 GTACAAAGTTAGTACAAACTTGAGTCA 57.909 33.333 2.97 0.00 46.40 3.41
3635 8112 7.971455 ACAAAGTTAGTACAAACTTGAGTCAC 58.029 34.615 2.97 0.00 46.40 3.67
3636 8113 7.822822 ACAAAGTTAGTACAAACTTGAGTCACT 59.177 33.333 2.97 0.00 46.40 3.41
3637 8114 8.665685 CAAAGTTAGTACAAACTTGAGTCACTT 58.334 33.333 2.97 0.00 46.40 3.16
3638 8115 9.880157 AAAGTTAGTACAAACTTGAGTCACTTA 57.120 29.630 2.97 0.00 46.40 2.24
3644 8121 8.621286 AGTACAAACTTGAGTCACTTATTTTGG 58.379 33.333 9.57 0.00 29.00 3.28
3645 8122 6.805713 ACAAACTTGAGTCACTTATTTTGGG 58.194 36.000 9.57 0.00 0.00 4.12
3646 8123 6.605594 ACAAACTTGAGTCACTTATTTTGGGA 59.394 34.615 9.57 0.00 0.00 4.37
3647 8124 6.635030 AACTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 0.00 4.46
3648 8125 4.755123 ACTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
3649 8126 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
3650 8127 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
3651 8128 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
3652 8129 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3653 8130 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
3654 8131 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3655 8132 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3662 8139 1.572415 TGGGACGGAGGGAGTACTATT 59.428 52.381 0.00 0.00 0.00 1.73
3687 8164 3.009143 GGACCTTAATTGGTGGTGTCTCT 59.991 47.826 4.02 0.00 41.00 3.10
3711 8188 3.447944 AGCTGAACTGGGTAGTAGTTAGC 59.552 47.826 0.00 0.00 38.42 3.09
3747 8236 4.916983 ATCTAGTGTAGCTGCTCTCTTG 57.083 45.455 4.91 4.77 0.00 3.02
3748 8237 3.020274 TCTAGTGTAGCTGCTCTCTTGG 58.980 50.000 4.91 0.85 0.00 3.61
3754 8243 1.930251 AGCTGCTCTCTTGGTACTCA 58.070 50.000 0.00 0.00 0.00 3.41
4176 8927 7.646130 GTCGAAGAAACATGTTTTCCATTTACA 59.354 33.333 24.02 1.55 39.69 2.41
4195 8946 2.366266 ACATGTTTGGCTCATGCTGTTT 59.634 40.909 14.18 0.00 44.26 2.83
4245 9079 2.641815 AGGATCCTGATTGCTGGTATCC 59.358 50.000 15.29 0.00 38.54 2.59
4272 9106 6.551385 AACTGAATTTGTAGCAGTCAGAAG 57.449 37.500 5.57 0.00 41.65 2.85
4347 9490 9.706691 TCTTACTATCTTAGTTGTTGGTTTCAG 57.293 33.333 0.00 0.00 40.14 3.02
4407 9550 5.274718 CAGCCTGTTATTACTCTAGTCGTG 58.725 45.833 0.00 0.00 0.00 4.35
4412 9555 6.319658 CCTGTTATTACTCTAGTCGTGGGTAA 59.680 42.308 0.00 0.00 0.00 2.85
4425 9568 6.588204 AGTCGTGGGTAATGAAATGCTTATA 58.412 36.000 0.00 0.00 0.00 0.98
4426 9569 7.224297 AGTCGTGGGTAATGAAATGCTTATAT 58.776 34.615 0.00 0.00 0.00 0.86
4427 9570 8.372459 AGTCGTGGGTAATGAAATGCTTATATA 58.628 33.333 0.00 0.00 0.00 0.86
4428 9571 8.995220 GTCGTGGGTAATGAAATGCTTATATAA 58.005 33.333 0.00 0.00 0.00 0.98
4429 9572 9.214957 TCGTGGGTAATGAAATGCTTATATAAG 57.785 33.333 16.79 16.79 36.40 1.73
4507 9650 5.779529 AGTGTTGATTCACTCATTTTGCT 57.220 34.783 0.00 0.00 44.07 3.91
4508 9651 5.766222 AGTGTTGATTCACTCATTTTGCTC 58.234 37.500 0.00 0.00 44.07 4.26
4509 9652 5.533903 AGTGTTGATTCACTCATTTTGCTCT 59.466 36.000 0.00 0.00 44.07 4.09
4510 9653 5.628193 GTGTTGATTCACTCATTTTGCTCTG 59.372 40.000 0.00 0.00 35.68 3.35
4511 9654 5.300034 TGTTGATTCACTCATTTTGCTCTGT 59.700 36.000 0.00 0.00 32.72 3.41
4512 9655 6.486320 TGTTGATTCACTCATTTTGCTCTGTA 59.514 34.615 0.00 0.00 32.72 2.74
4513 9656 7.175467 TGTTGATTCACTCATTTTGCTCTGTAT 59.825 33.333 0.00 0.00 32.72 2.29
4514 9657 7.080353 TGATTCACTCATTTTGCTCTGTATG 57.920 36.000 0.00 0.00 0.00 2.39
4515 9658 6.656270 TGATTCACTCATTTTGCTCTGTATGT 59.344 34.615 0.00 0.00 0.00 2.29
4516 9659 7.823799 TGATTCACTCATTTTGCTCTGTATGTA 59.176 33.333 0.00 0.00 0.00 2.29
4517 9660 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
4518 9661 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
4519 9662 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
4520 9663 6.815641 CACTCATTTTGCTCTGTATGTAGTCT 59.184 38.462 0.00 0.00 0.00 3.24
4521 9664 6.815641 ACTCATTTTGCTCTGTATGTAGTCTG 59.184 38.462 0.00 0.00 0.00 3.51
4522 9665 6.701340 TCATTTTGCTCTGTATGTAGTCTGT 58.299 36.000 0.00 0.00 0.00 3.41
4523 9666 7.836842 TCATTTTGCTCTGTATGTAGTCTGTA 58.163 34.615 0.00 0.00 0.00 2.74
4524 9667 8.478066 TCATTTTGCTCTGTATGTAGTCTGTAT 58.522 33.333 0.00 0.00 0.00 2.29
4525 9668 9.102757 CATTTTGCTCTGTATGTAGTCTGTATT 57.897 33.333 0.00 0.00 0.00 1.89
4526 9669 8.479313 TTTTGCTCTGTATGTAGTCTGTATTG 57.521 34.615 0.00 0.00 0.00 1.90
4527 9670 6.149129 TGCTCTGTATGTAGTCTGTATTGG 57.851 41.667 0.00 0.00 0.00 3.16
4528 9671 5.891551 TGCTCTGTATGTAGTCTGTATTGGA 59.108 40.000 0.00 0.00 0.00 3.53
4529 9672 6.379988 TGCTCTGTATGTAGTCTGTATTGGAA 59.620 38.462 0.00 0.00 0.00 3.53
4530 9673 7.069950 TGCTCTGTATGTAGTCTGTATTGGAAT 59.930 37.037 0.00 0.00 0.00 3.01
4531 9674 7.596995 GCTCTGTATGTAGTCTGTATTGGAATC 59.403 40.741 0.00 0.00 0.00 2.52
4532 9675 8.768501 TCTGTATGTAGTCTGTATTGGAATCT 57.231 34.615 0.00 0.00 0.00 2.40
4533 9676 8.851145 TCTGTATGTAGTCTGTATTGGAATCTC 58.149 37.037 0.00 0.00 0.00 2.75
4534 9677 8.768501 TGTATGTAGTCTGTATTGGAATCTCT 57.231 34.615 0.00 0.00 0.00 3.10
4535 9678 9.862149 TGTATGTAGTCTGTATTGGAATCTCTA 57.138 33.333 0.00 0.00 0.00 2.43
4542 9685 9.660180 AGTCTGTATTGGAATCTCTAAAAAGTC 57.340 33.333 0.00 0.00 0.00 3.01
4543 9686 9.660180 GTCTGTATTGGAATCTCTAAAAAGTCT 57.340 33.333 0.00 0.00 0.00 3.24
4561 9704 8.959705 AAAAGTCTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
4562 9705 6.667558 AGTCTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4563 9706 6.379579 AGTCTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4564 9707 6.494146 AGTCTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4579 9894 4.524714 CGGAGGGAGTACTATGTTGATGAT 59.475 45.833 0.00 0.00 0.00 2.45
4611 9926 3.194755 TCATCTTTCTGCTTGCATTGCAT 59.805 39.130 12.95 0.00 38.76 3.96
4612 9927 3.226346 TCTTTCTGCTTGCATTGCATC 57.774 42.857 12.95 8.20 38.76 3.91
4616 9931 0.806102 CTGCTTGCATTGCATCCAGC 60.806 55.000 21.43 21.43 39.48 4.85
5232 10551 2.663196 CCCCACGAGTCTGAACCC 59.337 66.667 0.00 0.00 0.00 4.11
5256 10575 0.391661 ATTCGTGCAACATCTCGGCT 60.392 50.000 0.00 0.00 35.74 5.52
5257 10576 1.291184 TTCGTGCAACATCTCGGCTG 61.291 55.000 0.00 0.00 35.74 4.85
5258 10577 2.482374 GTGCAACATCTCGGCTGC 59.518 61.111 0.00 0.00 36.32 5.25
5353 10687 1.745489 CTGGCGGGTGGACTTAAGC 60.745 63.158 1.29 0.00 0.00 3.09
5679 12059 8.409371 TGCAACTCAAAATTGTACTCATTTGTA 58.591 29.630 13.60 3.41 35.01 2.41
5759 13004 1.871676 CTGACCATTGCCAGATCATCG 59.128 52.381 0.00 0.00 32.37 3.84
5760 13005 1.485895 TGACCATTGCCAGATCATCGA 59.514 47.619 0.00 0.00 0.00 3.59
5776 13021 7.655236 GATCATCGACATTGATCTTCAAGAT 57.345 36.000 16.68 0.00 43.94 2.40
5777 13022 8.085720 GATCATCGACATTGATCTTCAAGATT 57.914 34.615 16.68 0.00 43.94 2.40
5778 13023 7.854557 TCATCGACATTGATCTTCAAGATTT 57.145 32.000 0.16 0.00 40.05 2.17
5779 13024 8.272545 TCATCGACATTGATCTTCAAGATTTT 57.727 30.769 0.16 0.00 40.05 1.82
5780 13025 8.179615 TCATCGACATTGATCTTCAAGATTTTG 58.820 33.333 0.16 2.88 40.05 2.44
5781 13026 7.671495 TCGACATTGATCTTCAAGATTTTGA 57.329 32.000 0.16 0.00 40.05 2.69
5810 13055 3.726557 TTGCATGGTTTCCTCTCTCAT 57.273 42.857 0.00 0.00 0.00 2.90
5894 13146 2.498248 GCTCGATGCAGAGGCTGA 59.502 61.111 0.00 0.00 42.31 4.26
5917 13169 6.918067 AGGGTTATCCTCCTTTTTGAAAAG 57.082 37.500 8.83 8.83 44.06 2.27
6184 13615 0.966179 AGACCGCACATACACACAGA 59.034 50.000 0.00 0.00 0.00 3.41
6402 15381 6.878923 GCATGTACATTAGGCATGTTAGGATA 59.121 38.462 5.37 0.00 44.40 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.107953 GCCTCTCCGACATCTGCC 59.892 66.667 0.00 0.00 0.00 4.85
1 2 2.279120 CGCCTCTCCGACATCTGC 60.279 66.667 0.00 0.00 0.00 4.26
2 3 0.387202 ATTCGCCTCTCCGACATCTG 59.613 55.000 0.00 0.00 36.90 2.90
3 4 0.387202 CATTCGCCTCTCCGACATCT 59.613 55.000 0.00 0.00 36.90 2.90
4 5 0.103208 ACATTCGCCTCTCCGACATC 59.897 55.000 0.00 0.00 36.90 3.06
8 9 0.320374 AAACACATTCGCCTCTCCGA 59.680 50.000 0.00 0.00 35.09 4.55
9 10 0.443869 CAAACACATTCGCCTCTCCG 59.556 55.000 0.00 0.00 0.00 4.63
10 11 0.804989 CCAAACACATTCGCCTCTCC 59.195 55.000 0.00 0.00 0.00 3.71
11 12 1.808411 TCCAAACACATTCGCCTCTC 58.192 50.000 0.00 0.00 0.00 3.20
13 14 1.401905 GGATCCAAACACATTCGCCTC 59.598 52.381 6.95 0.00 0.00 4.70
14 15 1.271871 TGGATCCAAACACATTCGCCT 60.272 47.619 13.46 0.00 0.00 5.52
15 16 1.173043 TGGATCCAAACACATTCGCC 58.827 50.000 13.46 0.00 0.00 5.54
16 17 2.595386 GTTGGATCCAAACACATTCGC 58.405 47.619 28.64 9.35 37.70 4.70
17 18 2.414029 CGGTTGGATCCAAACACATTCG 60.414 50.000 35.64 18.56 43.30 3.34
18 19 2.556622 ACGGTTGGATCCAAACACATTC 59.443 45.455 35.64 19.18 43.30 2.67
20 21 2.159382 GACGGTTGGATCCAAACACAT 58.841 47.619 35.64 23.26 43.30 3.21
22 23 1.600023 TGACGGTTGGATCCAAACAC 58.400 50.000 35.64 28.40 43.30 3.32
23 24 2.158559 CATGACGGTTGGATCCAAACA 58.841 47.619 35.64 26.69 43.30 2.83
24 25 1.472480 CCATGACGGTTGGATCCAAAC 59.528 52.381 29.58 29.58 40.02 2.93
25 26 1.352687 TCCATGACGGTTGGATCCAAA 59.647 47.619 28.64 13.45 38.35 3.28
26 27 0.988063 TCCATGACGGTTGGATCCAA 59.012 50.000 23.63 23.63 38.35 3.53
27 28 2.690367 TCCATGACGGTTGGATCCA 58.310 52.632 11.44 11.44 38.35 3.41
31 32 1.077787 GGCATCCATGACGGTTGGA 60.078 57.895 4.13 4.13 46.86 3.53
32 33 0.964860 TTGGCATCCATGACGGTTGG 60.965 55.000 0.00 0.00 39.17 3.77
33 34 0.171007 GTTGGCATCCATGACGGTTG 59.829 55.000 0.00 0.00 39.17 3.77
34 35 1.305219 CGTTGGCATCCATGACGGTT 61.305 55.000 0.00 0.00 39.17 4.44
35 36 1.745115 CGTTGGCATCCATGACGGT 60.745 57.895 0.00 0.00 39.17 4.83
36 37 3.101209 CGTTGGCATCCATGACGG 58.899 61.111 0.00 0.00 39.17 4.79
37 38 2.404789 GCGTTGGCATCCATGACG 59.595 61.111 2.95 2.95 39.75 4.35
38 39 2.404789 CGCGTTGGCATCCATGAC 59.595 61.111 0.00 0.00 39.92 3.06
39 40 2.823593 CCGCGTTGGCATCCATGA 60.824 61.111 4.92 0.00 39.92 3.07
40 41 2.823593 TCCGCGTTGGCATCCATG 60.824 61.111 4.92 0.00 39.92 3.66
43 44 2.203070 ATCTCCGCGTTGGCATCC 60.203 61.111 4.92 0.00 39.92 3.51
44 45 2.247437 GGATCTCCGCGTTGGCATC 61.247 63.158 4.92 0.00 39.92 3.91
45 46 2.203070 GGATCTCCGCGTTGGCAT 60.203 61.111 4.92 0.00 39.92 4.40
65 66 4.241555 ATCGATCCAGCCACCGCC 62.242 66.667 0.00 0.00 34.57 6.13
66 67 2.969238 CATCGATCCAGCCACCGC 60.969 66.667 0.00 0.00 0.00 5.68
67 68 2.280389 CCATCGATCCAGCCACCG 60.280 66.667 0.00 0.00 0.00 4.94
68 69 1.070445 CTCCATCGATCCAGCCACC 59.930 63.158 0.00 0.00 0.00 4.61
69 70 0.033228 CTCTCCATCGATCCAGCCAC 59.967 60.000 0.00 0.00 0.00 5.01
70 71 0.397675 ACTCTCCATCGATCCAGCCA 60.398 55.000 0.00 0.00 0.00 4.75
71 72 1.543802 CTACTCTCCATCGATCCAGCC 59.456 57.143 0.00 0.00 0.00 4.85
72 73 1.067915 GCTACTCTCCATCGATCCAGC 60.068 57.143 0.00 0.00 0.00 4.85
73 74 2.234143 TGCTACTCTCCATCGATCCAG 58.766 52.381 0.00 0.00 0.00 3.86
74 75 2.364972 TGCTACTCTCCATCGATCCA 57.635 50.000 0.00 0.00 0.00 3.41
76 77 3.057596 CCTCTTGCTACTCTCCATCGATC 60.058 52.174 0.00 0.00 0.00 3.69
77 78 2.890311 CCTCTTGCTACTCTCCATCGAT 59.110 50.000 0.00 0.00 0.00 3.59
79 80 2.028130 ACCTCTTGCTACTCTCCATCG 58.972 52.381 0.00 0.00 0.00 3.84
80 81 2.102252 CCACCTCTTGCTACTCTCCATC 59.898 54.545 0.00 0.00 0.00 3.51
81 82 2.114616 CCACCTCTTGCTACTCTCCAT 58.885 52.381 0.00 0.00 0.00 3.41
82 83 1.077169 TCCACCTCTTGCTACTCTCCA 59.923 52.381 0.00 0.00 0.00 3.86
83 84 1.853963 TCCACCTCTTGCTACTCTCC 58.146 55.000 0.00 0.00 0.00 3.71
84 85 2.102252 CCATCCACCTCTTGCTACTCTC 59.898 54.545 0.00 0.00 0.00 3.20
85 86 2.114616 CCATCCACCTCTTGCTACTCT 58.885 52.381 0.00 0.00 0.00 3.24
86 87 2.102252 CTCCATCCACCTCTTGCTACTC 59.898 54.545 0.00 0.00 0.00 2.59
87 88 2.114616 CTCCATCCACCTCTTGCTACT 58.885 52.381 0.00 0.00 0.00 2.57
88 89 1.139853 CCTCCATCCACCTCTTGCTAC 59.860 57.143 0.00 0.00 0.00 3.58
89 90 1.273838 ACCTCCATCCACCTCTTGCTA 60.274 52.381 0.00 0.00 0.00 3.49
90 91 0.548682 ACCTCCATCCACCTCTTGCT 60.549 55.000 0.00 0.00 0.00 3.91
92 93 1.209019 CTGACCTCCATCCACCTCTTG 59.791 57.143 0.00 0.00 0.00 3.02
95 96 1.341156 CCCTGACCTCCATCCACCTC 61.341 65.000 0.00 0.00 0.00 3.85
98 99 1.341156 CCTCCCTGACCTCCATCCAC 61.341 65.000 0.00 0.00 0.00 4.02
99 100 1.003442 CCTCCCTGACCTCCATCCA 59.997 63.158 0.00 0.00 0.00 3.41
101 102 0.031616 ACTCCTCCCTGACCTCCATC 60.032 60.000 0.00 0.00 0.00 3.51
102 103 0.326048 CACTCCTCCCTGACCTCCAT 60.326 60.000 0.00 0.00 0.00 3.41
103 104 1.079256 CACTCCTCCCTGACCTCCA 59.921 63.158 0.00 0.00 0.00 3.86
104 105 1.687493 CCACTCCTCCCTGACCTCC 60.687 68.421 0.00 0.00 0.00 4.30
105 106 0.686112 CTCCACTCCTCCCTGACCTC 60.686 65.000 0.00 0.00 0.00 3.85
106 107 1.390125 CTCCACTCCTCCCTGACCT 59.610 63.158 0.00 0.00 0.00 3.85
108 109 1.610673 TGCTCCACTCCTCCCTGAC 60.611 63.158 0.00 0.00 0.00 3.51
109 110 1.305633 CTGCTCCACTCCTCCCTGA 60.306 63.158 0.00 0.00 0.00 3.86
110 111 1.611851 ACTGCTCCACTCCTCCCTG 60.612 63.158 0.00 0.00 0.00 4.45
112 113 2.716017 CGACTGCTCCACTCCTCCC 61.716 68.421 0.00 0.00 0.00 4.30
113 114 2.716017 CCGACTGCTCCACTCCTCC 61.716 68.421 0.00 0.00 0.00 4.30
114 115 1.040339 ATCCGACTGCTCCACTCCTC 61.040 60.000 0.00 0.00 0.00 3.71
115 116 1.000993 ATCCGACTGCTCCACTCCT 59.999 57.895 0.00 0.00 0.00 3.69
116 117 1.439644 GATCCGACTGCTCCACTCC 59.560 63.158 0.00 0.00 0.00 3.85
117 118 1.439644 GGATCCGACTGCTCCACTC 59.560 63.158 0.00 0.00 0.00 3.51
118 119 2.418910 CGGATCCGACTGCTCCACT 61.419 63.158 30.62 0.00 42.83 4.00
119 120 1.381928 TACGGATCCGACTGCTCCAC 61.382 60.000 39.55 0.00 42.83 4.02
120 121 1.077285 TACGGATCCGACTGCTCCA 60.077 57.895 39.55 11.09 42.83 3.86
121 122 1.359475 GTACGGATCCGACTGCTCC 59.641 63.158 39.55 14.50 42.83 4.70
122 123 1.359475 GGTACGGATCCGACTGCTC 59.641 63.158 39.55 20.08 42.83 4.26
123 124 2.125961 GGGTACGGATCCGACTGCT 61.126 63.158 39.55 19.85 42.83 4.24
124 125 1.952102 TTGGGTACGGATCCGACTGC 61.952 60.000 39.55 21.52 42.83 4.40
125 126 0.533491 TTTGGGTACGGATCCGACTG 59.467 55.000 39.55 12.21 42.83 3.51
126 127 0.822164 CTTTGGGTACGGATCCGACT 59.178 55.000 39.55 21.41 42.83 4.18
128 129 1.066716 CAACTTTGGGTACGGATCCGA 60.067 52.381 39.55 20.53 42.83 4.55
129 130 1.365699 CAACTTTGGGTACGGATCCG 58.634 55.000 32.20 32.20 46.03 4.18
130 131 1.746470 CCAACTTTGGGTACGGATCC 58.254 55.000 0.00 0.00 44.70 3.36
141 142 3.361977 CCCCCGTCGCCAACTTTG 61.362 66.667 0.00 0.00 0.00 2.77
162 163 1.606601 TATCGGCCCCTCCATCTCG 60.607 63.158 0.00 0.00 34.01 4.04
163 164 0.832135 TGTATCGGCCCCTCCATCTC 60.832 60.000 0.00 0.00 34.01 2.75
164 165 0.178891 ATGTATCGGCCCCTCCATCT 60.179 55.000 0.00 0.00 34.01 2.90
165 166 0.693049 AATGTATCGGCCCCTCCATC 59.307 55.000 0.00 0.00 34.01 3.51
166 167 0.693049 GAATGTATCGGCCCCTCCAT 59.307 55.000 0.00 0.00 34.01 3.41
167 168 0.692756 TGAATGTATCGGCCCCTCCA 60.693 55.000 0.00 0.00 34.01 3.86
168 169 0.250338 GTGAATGTATCGGCCCCTCC 60.250 60.000 0.00 0.00 0.00 4.30
169 170 0.250338 GGTGAATGTATCGGCCCCTC 60.250 60.000 0.00 0.00 0.00 4.30
171 172 0.110486 ATGGTGAATGTATCGGCCCC 59.890 55.000 0.00 0.00 0.00 5.80
185 186 0.035439 GACCTACCCCACACATGGTG 60.035 60.000 0.00 2.40 45.66 4.17
186 187 0.178873 AGACCTACCCCACACATGGT 60.179 55.000 0.00 0.00 45.66 3.55
194 195 1.394532 AGGAGAAGAGACCTACCCCA 58.605 55.000 0.00 0.00 34.47 4.96
207 212 2.126463 CGTCGAGCGCAAGGAGAA 60.126 61.111 11.47 0.00 38.28 2.87
237 242 4.090761 ACAAGACATATGCCATACCCTG 57.909 45.455 1.58 0.00 0.00 4.45
263 268 4.876580 AGTATACCTAGTTTTCTCCCCGT 58.123 43.478 0.00 0.00 0.00 5.28
351 356 1.623811 CCAGCTACCCACAGTTACACT 59.376 52.381 0.00 0.00 0.00 3.55
368 399 4.044336 TGAATCACAAACAAACAGCCAG 57.956 40.909 0.00 0.00 0.00 4.85
383 414 4.934797 ACCCCTCTGAAAATCTGAATCA 57.065 40.909 0.00 0.00 0.00 2.57
402 433 4.102367 AGCTTCTGATTCAGGGATTCTACC 59.898 45.833 13.59 0.00 31.51 3.18
429 460 3.486383 CTTAGGTGGCCTTTGTTTGAGA 58.514 45.455 3.32 0.00 34.61 3.27
462 493 7.458409 ACTAGTACGTCTTTTACCATTGAGA 57.542 36.000 0.00 0.00 0.00 3.27
463 494 6.468319 CGACTAGTACGTCTTTTACCATTGAG 59.532 42.308 0.00 0.00 0.00 3.02
465 496 6.250104 GTCGACTAGTACGTCTTTTACCATTG 59.750 42.308 8.70 0.00 0.00 2.82
466 497 6.072508 TGTCGACTAGTACGTCTTTTACCATT 60.073 38.462 17.92 0.00 0.00 3.16
493 3326 6.543831 GCAAGGAAGTCAATATAGACACCATT 59.456 38.462 0.00 0.00 40.98 3.16
507 3340 1.333619 GCACGAAAAGCAAGGAAGTCA 59.666 47.619 0.00 0.00 0.00 3.41
619 3453 9.770097 CCAAACTATCATCTTTTATCTCTAGCA 57.230 33.333 0.00 0.00 0.00 3.49
637 3471 4.943705 ACATCAAACATCGAGCCAAACTAT 59.056 37.500 0.00 0.00 0.00 2.12
652 3486 1.541588 GAGACCCAAGCCACATCAAAC 59.458 52.381 0.00 0.00 0.00 2.93
658 3492 0.179020 CAAGTGAGACCCAAGCCACA 60.179 55.000 0.00 0.00 32.35 4.17
720 3554 1.751437 AGCGGGCTTCACTAAAATCC 58.249 50.000 0.00 0.00 0.00 3.01
733 3568 1.446966 GTGTGAGAGAGAAGCGGGC 60.447 63.158 0.00 0.00 0.00 6.13
756 3591 1.514678 TTTGAGGTGGTCGCACATGC 61.515 55.000 0.00 0.00 37.78 4.06
794 3629 0.521735 CACTGATCACCTCGTCGTCA 59.478 55.000 0.00 0.00 0.00 4.35
890 4811 3.222855 TTTGGTTGTGCTGGCCGG 61.223 61.111 7.41 7.41 0.00 6.13
891 4812 2.027460 GTTTGGTTGTGCTGGCCG 59.973 61.111 0.00 0.00 0.00 6.13
892 4813 2.421314 GGTTTGGTTGTGCTGGCC 59.579 61.111 0.00 0.00 0.00 5.36
1114 5095 1.532604 ATCTTGACGGTCACCTCGCA 61.533 55.000 10.97 0.00 0.00 5.10
1201 5182 4.488136 AATGCGGCGGATGGAGCA 62.488 61.111 16.33 0.00 44.13 4.26
1202 5183 3.654020 GAATGCGGCGGATGGAGC 61.654 66.667 16.33 1.22 0.00 4.70
1204 5185 2.623094 AATGGAATGCGGCGGATGGA 62.623 55.000 16.33 1.87 0.00 3.41
1205 5186 2.133742 GAATGGAATGCGGCGGATGG 62.134 60.000 16.33 0.00 0.00 3.51
1207 5188 1.898574 GGAATGGAATGCGGCGGAT 60.899 57.895 8.49 8.49 0.00 4.18
1208 5189 2.515991 GGAATGGAATGCGGCGGA 60.516 61.111 9.78 6.17 0.00 5.54
1423 5453 3.955471 TCCTTTGATTAGCAGACAAGGG 58.045 45.455 0.00 0.00 40.49 3.95
1481 5512 1.347707 TCAAGACCCTACAAGGTGCTG 59.652 52.381 0.00 0.00 41.42 4.41
1514 5546 8.106247 TCCTAAATGTTACATGTTCAGTTTCC 57.894 34.615 16.85 0.00 0.00 3.13
1516 5548 7.309194 GGCTCCTAAATGTTACATGTTCAGTTT 60.309 37.037 16.85 10.95 0.00 2.66
1523 5555 5.179452 ACTGGCTCCTAAATGTTACATGT 57.821 39.130 2.69 2.69 0.00 3.21
1524 5556 6.515272 AAACTGGCTCCTAAATGTTACATG 57.485 37.500 0.00 0.00 0.00 3.21
1566 5598 7.556433 GCTAAACTAAGCATGTCAGTAATACG 58.444 38.462 0.00 0.00 42.30 3.06
1627 5662 7.992754 ATGACTTAAATTTCAGAGCAGACTT 57.007 32.000 6.38 0.00 0.00 3.01
1628 5663 7.094463 CCAATGACTTAAATTTCAGAGCAGACT 60.094 37.037 6.38 0.00 0.00 3.24
1631 5666 7.149569 TCCAATGACTTAAATTTCAGAGCAG 57.850 36.000 6.38 0.00 0.00 4.24
1661 5696 0.460635 GCAACATGCGCCATGGAAAT 60.461 50.000 18.40 1.73 45.16 2.17
1752 5789 1.271656 AGCAGCATTCAGAAAGGCAAC 59.728 47.619 11.52 4.41 44.46 4.17
1755 5792 0.886563 ACAGCAGCATTCAGAAAGGC 59.113 50.000 0.00 2.65 42.40 4.35
1867 6217 4.700692 TGTCACCAGTACAGATACAGAGTC 59.299 45.833 0.00 0.00 33.30 3.36
2078 6477 1.020437 GAGTCCTAAATGCTGCCTGC 58.980 55.000 0.00 0.00 43.25 4.85
2114 6514 8.426569 AAATGCTAATCCACTGGCATATTAAT 57.573 30.769 0.00 0.00 43.39 1.40
2236 6636 3.615224 ACAATGTGCCATTTCCCATTC 57.385 42.857 0.00 0.00 0.00 2.67
2361 6762 5.809051 GCCTCTTAAATTTCAGAGCAAATGG 59.191 40.000 19.72 10.11 36.03 3.16
2476 6877 6.812160 ACAAGGTCTCATTCAGTAATCGTAAC 59.188 38.462 0.00 0.00 0.00 2.50
2480 6881 5.980116 CCTACAAGGTCTCATTCAGTAATCG 59.020 44.000 0.00 0.00 0.00 3.34
2493 6894 6.231211 CAACTGTTAACATCCTACAAGGTCT 58.769 40.000 9.13 0.00 36.53 3.85
2569 6970 6.150396 CTAAACTAGCATGCCACTACTACT 57.850 41.667 15.66 0.00 0.00 2.57
2616 7017 7.094508 TCAGCTTTGAGACACAAACAATTAA 57.905 32.000 0.00 0.00 42.57 1.40
2625 7026 2.564771 CCTGTTCAGCTTTGAGACACA 58.435 47.619 0.00 0.00 0.00 3.72
2633 7034 4.976540 AACTACTACCCTGTTCAGCTTT 57.023 40.909 0.00 0.00 0.00 3.51
2652 7053 4.875561 AGGTCTGAAACTGAGTCCTAAC 57.124 45.455 0.00 0.00 28.48 2.34
2662 7063 5.649831 GCATTTCCTCAATAGGTCTGAAACT 59.350 40.000 0.00 0.00 44.09 2.66
2663 7064 5.649831 AGCATTTCCTCAATAGGTCTGAAAC 59.350 40.000 0.00 0.00 44.09 2.78
2724 7125 6.039717 CCATATTCAGATTTTGGGACACGAAT 59.960 38.462 0.00 0.00 39.29 3.34
2739 7140 9.066892 GTTATGCTATGGAAAACCATATTCAGA 57.933 33.333 9.02 5.92 33.01 3.27
2759 7160 0.394899 AAGCTGCCCCTCAGTTATGC 60.395 55.000 0.00 0.00 44.66 3.14
2763 7164 0.106015 AAACAAGCTGCCCCTCAGTT 60.106 50.000 0.00 0.00 44.66 3.16
2789 7190 9.988815 CATGGTAAGAGATAACTAAACTAGCAT 57.011 33.333 0.00 0.00 0.00 3.79
2790 7191 8.978472 ACATGGTAAGAGATAACTAAACTAGCA 58.022 33.333 0.00 0.00 0.00 3.49
2791 7192 9.819267 AACATGGTAAGAGATAACTAAACTAGC 57.181 33.333 0.00 0.00 0.00 3.42
2794 7195 9.654663 GTCAACATGGTAAGAGATAACTAAACT 57.345 33.333 0.00 0.00 0.00 2.66
2795 7196 8.592998 CGTCAACATGGTAAGAGATAACTAAAC 58.407 37.037 0.00 0.00 0.00 2.01
2796 7197 8.525316 TCGTCAACATGGTAAGAGATAACTAAA 58.475 33.333 0.00 0.00 0.00 1.85
2797 7198 8.058667 TCGTCAACATGGTAAGAGATAACTAA 57.941 34.615 0.00 0.00 0.00 2.24
2798 7199 7.634671 TCGTCAACATGGTAAGAGATAACTA 57.365 36.000 0.00 0.00 0.00 2.24
2799 7200 6.525578 TCGTCAACATGGTAAGAGATAACT 57.474 37.500 0.00 0.00 0.00 2.24
2800 7201 7.772332 AATCGTCAACATGGTAAGAGATAAC 57.228 36.000 0.00 0.00 0.00 1.89
2803 7204 9.477484 GTATAAATCGTCAACATGGTAAGAGAT 57.523 33.333 0.00 0.00 0.00 2.75
2804 7205 8.471609 TGTATAAATCGTCAACATGGTAAGAGA 58.528 33.333 0.00 0.00 0.00 3.10
2805 7206 8.642908 TGTATAAATCGTCAACATGGTAAGAG 57.357 34.615 0.00 0.00 0.00 2.85
2806 7207 9.040939 CATGTATAAATCGTCAACATGGTAAGA 57.959 33.333 0.00 0.00 42.25 2.10
2813 7214 9.817809 AACTAGACATGTATAAATCGTCAACAT 57.182 29.630 0.00 0.00 0.00 2.71
2814 7215 9.647797 AAACTAGACATGTATAAATCGTCAACA 57.352 29.630 0.00 0.00 0.00 3.33
2817 7218 9.516314 CAGAAACTAGACATGTATAAATCGTCA 57.484 33.333 0.00 0.00 0.00 4.35
2818 7219 8.480853 GCAGAAACTAGACATGTATAAATCGTC 58.519 37.037 0.00 0.00 0.00 4.20
2819 7220 8.198109 AGCAGAAACTAGACATGTATAAATCGT 58.802 33.333 0.00 0.00 0.00 3.73
2820 7221 8.581057 AGCAGAAACTAGACATGTATAAATCG 57.419 34.615 0.00 0.00 0.00 3.34
2821 7222 8.695284 CGAGCAGAAACTAGACATGTATAAATC 58.305 37.037 0.00 0.00 0.00 2.17
2822 7223 7.169982 GCGAGCAGAAACTAGACATGTATAAAT 59.830 37.037 0.00 0.00 0.00 1.40
2823 7224 6.475727 GCGAGCAGAAACTAGACATGTATAAA 59.524 38.462 0.00 0.00 0.00 1.40
2824 7225 5.977725 GCGAGCAGAAACTAGACATGTATAA 59.022 40.000 0.00 0.00 0.00 0.98
2825 7226 5.520632 GCGAGCAGAAACTAGACATGTATA 58.479 41.667 0.00 0.00 0.00 1.47
2826 7227 4.363999 GCGAGCAGAAACTAGACATGTAT 58.636 43.478 0.00 0.00 0.00 2.29
2827 7228 3.730963 CGCGAGCAGAAACTAGACATGTA 60.731 47.826 0.00 0.00 0.00 2.29
2828 7229 2.611518 GCGAGCAGAAACTAGACATGT 58.388 47.619 0.00 0.00 0.00 3.21
2829 7230 1.585668 CGCGAGCAGAAACTAGACATG 59.414 52.381 0.00 0.00 0.00 3.21
2830 7231 1.202582 ACGCGAGCAGAAACTAGACAT 59.797 47.619 15.93 0.00 0.00 3.06
2831 7232 0.596577 ACGCGAGCAGAAACTAGACA 59.403 50.000 15.93 0.00 0.00 3.41
2832 7233 1.387084 CAACGCGAGCAGAAACTAGAC 59.613 52.381 15.93 0.00 0.00 2.59
2833 7234 1.698165 CAACGCGAGCAGAAACTAGA 58.302 50.000 15.93 0.00 0.00 2.43
2834 7235 0.093705 GCAACGCGAGCAGAAACTAG 59.906 55.000 15.93 0.00 0.00 2.57
2835 7236 0.598942 TGCAACGCGAGCAGAAACTA 60.599 50.000 22.79 3.14 37.02 2.24
2836 7237 1.887242 TGCAACGCGAGCAGAAACT 60.887 52.632 22.79 0.00 37.02 2.66
2875 7276 6.785191 TCTTACAAAGAAGAAAGTGCACTTG 58.215 36.000 31.73 19.54 33.52 3.16
2907 7308 4.310769 GTGCCGATAGAGCAATCTACATT 58.689 43.478 0.00 0.00 42.39 2.71
2934 7335 2.098770 GCAGGAACAGAGATTGAATGCC 59.901 50.000 0.00 0.00 0.00 4.40
2941 7342 4.273148 AGTAAACGCAGGAACAGAGATT 57.727 40.909 0.00 0.00 0.00 2.40
3016 7421 3.005578 GCCTACAATTACTACGAGGGAGG 59.994 52.174 0.00 0.00 0.00 4.30
3047 7452 1.619332 TGGAACCATGTGCACTACGTA 59.381 47.619 19.41 0.00 0.00 3.57
3059 7464 1.963515 GGCAAGTTTCAGTGGAACCAT 59.036 47.619 10.85 0.00 37.80 3.55
3060 7465 1.064017 AGGCAAGTTTCAGTGGAACCA 60.064 47.619 10.85 0.00 37.80 3.67
3061 7466 1.338020 CAGGCAAGTTTCAGTGGAACC 59.662 52.381 10.85 0.00 37.80 3.62
3062 7467 2.024414 ACAGGCAAGTTTCAGTGGAAC 58.976 47.619 6.14 6.14 31.35 3.62
3063 7468 2.297701 GACAGGCAAGTTTCAGTGGAA 58.702 47.619 0.00 0.00 0.00 3.53
3064 7469 1.211703 TGACAGGCAAGTTTCAGTGGA 59.788 47.619 0.00 0.00 0.00 4.02
3065 7470 1.679139 TGACAGGCAAGTTTCAGTGG 58.321 50.000 0.00 0.00 0.00 4.00
3066 7471 3.996150 AATGACAGGCAAGTTTCAGTG 57.004 42.857 0.00 0.00 0.00 3.66
3067 7472 4.646492 AGAAAATGACAGGCAAGTTTCAGT 59.354 37.500 15.08 0.00 37.19 3.41
3075 7480 6.409524 AAATTCAGAGAAAATGACAGGCAA 57.590 33.333 0.00 0.00 0.00 4.52
3134 7539 4.094887 CCACGTAAATGCTAATTCACTGCT 59.905 41.667 0.00 0.00 0.00 4.24
3141 7546 5.574891 TTCATGCCACGTAAATGCTAATT 57.425 34.783 0.00 0.00 0.00 1.40
3152 7557 4.564041 TGCAATTTAAATTCATGCCACGT 58.436 34.783 16.81 0.00 0.00 4.49
3279 7684 3.415237 GCAGTTTGCACACACAACA 57.585 47.368 5.67 0.00 44.26 3.33
3297 7702 2.899900 TGGGTCCTAGCAGCTACATATG 59.100 50.000 0.00 0.00 0.00 1.78
3388 7802 4.866486 GCCACCTAAATTTCAGAGCAAATG 59.134 41.667 0.00 0.00 0.00 2.32
3408 7822 2.187100 TGATCCACTGACACTATGCCA 58.813 47.619 0.00 0.00 0.00 4.92
3415 7829 4.194640 AGCATATGTTGATCCACTGACAC 58.805 43.478 4.29 0.00 0.00 3.67
3437 7851 4.163427 CAAGCTCCCATCTAGGAATCCTA 58.837 47.826 8.95 8.95 41.22 2.94
3438 7852 2.978278 CAAGCTCCCATCTAGGAATCCT 59.022 50.000 7.13 7.13 41.22 3.24
3526 7999 6.877611 AAAATAGCATTCCAATACTACCCG 57.122 37.500 0.00 0.00 0.00 5.28
3554 8028 2.423947 GGGACGGAGGGAGTAATAGACA 60.424 54.545 0.00 0.00 0.00 3.41
3561 8038 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3562 8039 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3563 8040 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3564 8041 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3565 8042 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
3566 8043 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3567 8044 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
3568 8045 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
3569 8046 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
3570 8047 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
3571 8048 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
3572 8049 6.605594 ACAAAGTTGAGTCACTTATTTTGGGA 59.394 34.615 12.94 0.00 35.87 4.37
3573 8050 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
3574 8051 8.621286 AGTACAAAGTTGAGTCACTTATTTTGG 58.379 33.333 12.94 0.78 35.87 3.28
3577 8054 9.490379 CCTAGTACAAAGTTGAGTCACTTATTT 57.510 33.333 0.00 0.00 35.87 1.40
3578 8055 7.603024 GCCTAGTACAAAGTTGAGTCACTTATT 59.397 37.037 0.00 0.00 35.87 1.40
3579 8056 7.038941 AGCCTAGTACAAAGTTGAGTCACTTAT 60.039 37.037 0.00 0.00 35.87 1.73
3580 8057 6.267014 AGCCTAGTACAAAGTTGAGTCACTTA 59.733 38.462 0.00 0.00 35.87 2.24
3581 8058 5.070580 AGCCTAGTACAAAGTTGAGTCACTT 59.929 40.000 0.00 0.00 38.74 3.16
3582 8059 4.589374 AGCCTAGTACAAAGTTGAGTCACT 59.411 41.667 0.00 0.00 0.00 3.41
3583 8060 4.884247 AGCCTAGTACAAAGTTGAGTCAC 58.116 43.478 0.00 0.00 0.00 3.67
3584 8061 5.546621 AAGCCTAGTACAAAGTTGAGTCA 57.453 39.130 0.00 0.00 0.00 3.41
3585 8062 6.689554 ACTAAGCCTAGTACAAAGTTGAGTC 58.310 40.000 0.00 0.00 36.56 3.36
3586 8063 6.667558 ACTAAGCCTAGTACAAAGTTGAGT 57.332 37.500 0.00 0.00 36.56 3.41
3597 8074 9.739276 TGTACTAACTTTGTACTAAGCCTAGTA 57.261 33.333 21.97 21.97 40.44 1.82
3598 8075 8.641498 TGTACTAACTTTGTACTAAGCCTAGT 57.359 34.615 23.24 23.24 40.44 2.57
3599 8076 9.918630 TTTGTACTAACTTTGTACTAAGCCTAG 57.081 33.333 15.69 16.79 40.44 3.02
3600 8077 9.696917 GTTTGTACTAACTTTGTACTAAGCCTA 57.303 33.333 15.69 7.80 40.44 3.93
3601 8078 8.427276 AGTTTGTACTAACTTTGTACTAAGCCT 58.573 33.333 15.68 7.12 40.44 4.58
3602 8079 8.599055 AGTTTGTACTAACTTTGTACTAAGCC 57.401 34.615 15.68 3.95 40.44 4.35
3603 8080 9.859692 CAAGTTTGTACTAACTTTGTACTAAGC 57.140 33.333 26.14 8.57 43.85 3.09
3607 8084 9.310716 GACTCAAGTTTGTACTAACTTTGTACT 57.689 33.333 26.14 11.72 43.85 2.73
3608 8085 9.090692 TGACTCAAGTTTGTACTAACTTTGTAC 57.909 33.333 26.14 19.04 43.85 2.90
3609 8086 9.090692 GTGACTCAAGTTTGTACTAACTTTGTA 57.909 33.333 26.14 16.32 43.85 2.41
3610 8087 7.822822 AGTGACTCAAGTTTGTACTAACTTTGT 59.177 33.333 26.14 25.01 43.85 2.83
3611 8088 8.197988 AGTGACTCAAGTTTGTACTAACTTTG 57.802 34.615 26.14 22.84 43.85 2.77
3612 8089 8.788325 AAGTGACTCAAGTTTGTACTAACTTT 57.212 30.769 26.14 15.97 43.85 2.66
3618 8095 8.621286 CCAAAATAAGTGACTCAAGTTTGTACT 58.379 33.333 15.07 0.00 35.68 2.73
3619 8096 7.860872 CCCAAAATAAGTGACTCAAGTTTGTAC 59.139 37.037 15.07 0.00 0.00 2.90
3620 8097 7.776030 TCCCAAAATAAGTGACTCAAGTTTGTA 59.224 33.333 15.07 5.29 0.00 2.41
3621 8098 6.605594 TCCCAAAATAAGTGACTCAAGTTTGT 59.394 34.615 15.07 0.00 0.00 2.83
3622 8099 6.918022 GTCCCAAAATAAGTGACTCAAGTTTG 59.082 38.462 11.50 11.50 0.00 2.93
3623 8100 6.238648 CGTCCCAAAATAAGTGACTCAAGTTT 60.239 38.462 0.00 0.00 0.00 2.66
3624 8101 5.238650 CGTCCCAAAATAAGTGACTCAAGTT 59.761 40.000 0.00 0.00 0.00 2.66
3625 8102 4.755123 CGTCCCAAAATAAGTGACTCAAGT 59.245 41.667 0.00 0.00 0.00 3.16
3626 8103 4.154195 CCGTCCCAAAATAAGTGACTCAAG 59.846 45.833 0.00 0.00 0.00 3.02
3627 8104 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3628 8105 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
3629 8106 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
3630 8107 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
3631 8108 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
3632 8109 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
3633 8110 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3634 8111 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3635 8112 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3636 8113 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3637 8114 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3638 8115 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3639 8116 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3640 8117 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
3641 8118 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
3642 8119 1.229131 ATAGTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
3643 8120 2.378378 AATAGTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
3644 8121 3.825585 CCTAAATAGTACTCCCTCCGTCC 59.174 52.174 0.00 0.00 0.00 4.79
3645 8122 4.518590 GTCCTAAATAGTACTCCCTCCGTC 59.481 50.000 0.00 0.00 0.00 4.79
3646 8123 4.468713 GTCCTAAATAGTACTCCCTCCGT 58.531 47.826 0.00 0.00 0.00 4.69
3647 8124 3.825585 GGTCCTAAATAGTACTCCCTCCG 59.174 52.174 0.00 0.00 0.00 4.63
3648 8125 5.077369 AGGTCCTAAATAGTACTCCCTCC 57.923 47.826 0.00 0.00 0.00 4.30
3649 8126 8.724113 ATTAAGGTCCTAAATAGTACTCCCTC 57.276 38.462 0.00 0.00 0.00 4.30
3650 8127 8.935741 CAATTAAGGTCCTAAATAGTACTCCCT 58.064 37.037 0.00 0.00 0.00 4.20
3651 8128 8.155510 CCAATTAAGGTCCTAAATAGTACTCCC 58.844 40.741 0.00 0.00 0.00 4.30
3652 8129 8.712103 ACCAATTAAGGTCCTAAATAGTACTCC 58.288 37.037 0.00 0.00 37.28 3.85
3653 8130 9.543783 CACCAATTAAGGTCCTAAATAGTACTC 57.456 37.037 0.00 0.00 40.77 2.59
3654 8131 8.491958 CCACCAATTAAGGTCCTAAATAGTACT 58.508 37.037 0.00 0.00 40.77 2.73
3655 8132 8.270030 ACCACCAATTAAGGTCCTAAATAGTAC 58.730 37.037 0.00 0.00 40.77 2.73
3662 8139 4.600111 AGACACCACCAATTAAGGTCCTAA 59.400 41.667 0.00 0.00 40.77 2.69
3687 8164 5.126707 GCTAACTACTACCCAGTTCAGCTTA 59.873 44.000 0.00 0.00 37.42 3.09
3747 8236 8.258708 ACAATTAAGAACCTACAGATGAGTACC 58.741 37.037 0.00 0.00 0.00 3.34
3748 8237 9.654663 AACAATTAAGAACCTACAGATGAGTAC 57.345 33.333 0.00 0.00 0.00 2.73
3754 8243 7.231467 ACACCAACAATTAAGAACCTACAGAT 58.769 34.615 0.00 0.00 0.00 2.90
3878 8435 7.471721 TCAATCATCCACATATTTTTCGACAC 58.528 34.615 0.00 0.00 0.00 3.67
4176 8927 3.756933 AAAACAGCATGAGCCAAACAT 57.243 38.095 0.00 0.00 43.56 2.71
4195 8946 6.948886 TGGTACCATTTTGTTATCCTAGCAAA 59.051 34.615 11.60 0.00 37.15 3.68
4245 9079 5.747565 TGACTGCTACAAATTCAGTTTTCG 58.252 37.500 0.00 0.00 40.74 3.46
4272 9106 2.365293 ACCCAGCAAATTGGAAACTGAC 59.635 45.455 0.00 0.00 40.87 3.51
4370 9513 2.840651 ACAGGCTGCTCCTAAGTTATGT 59.159 45.455 15.89 0.00 45.52 2.29
4472 9615 9.950496 AGTGAATCAACACTCTAAAATATGTCT 57.050 29.630 0.00 0.00 46.36 3.41
4486 9629 5.628193 CAGAGCAAAATGAGTGAATCAACAC 59.372 40.000 0.00 0.00 42.53 3.32
4487 9630 5.300034 ACAGAGCAAAATGAGTGAATCAACA 59.700 36.000 0.00 0.00 42.53 3.33
4488 9631 5.766222 ACAGAGCAAAATGAGTGAATCAAC 58.234 37.500 0.00 0.00 42.53 3.18
4489 9632 7.175467 ACATACAGAGCAAAATGAGTGAATCAA 59.825 33.333 0.00 0.00 42.53 2.57
4490 9633 6.656270 ACATACAGAGCAAAATGAGTGAATCA 59.344 34.615 0.00 0.00 43.70 2.57
4491 9634 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
4492 9635 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
4493 9636 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
4494 9637 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
4495 9638 6.815641 AGACTACATACAGAGCAAAATGAGTG 59.184 38.462 0.00 0.00 0.00 3.51
4496 9639 6.815641 CAGACTACATACAGAGCAAAATGAGT 59.184 38.462 0.00 0.00 0.00 3.41
4497 9640 6.815641 ACAGACTACATACAGAGCAAAATGAG 59.184 38.462 0.00 0.00 0.00 2.90
4498 9641 6.701340 ACAGACTACATACAGAGCAAAATGA 58.299 36.000 0.00 0.00 0.00 2.57
4499 9642 6.974932 ACAGACTACATACAGAGCAAAATG 57.025 37.500 0.00 0.00 0.00 2.32
4500 9643 9.102757 CAATACAGACTACATACAGAGCAAAAT 57.897 33.333 0.00 0.00 0.00 1.82
4501 9644 7.549134 CCAATACAGACTACATACAGAGCAAAA 59.451 37.037 0.00 0.00 0.00 2.44
4502 9645 7.041721 CCAATACAGACTACATACAGAGCAAA 58.958 38.462 0.00 0.00 0.00 3.68
4503 9646 6.379988 TCCAATACAGACTACATACAGAGCAA 59.620 38.462 0.00 0.00 0.00 3.91
4504 9647 5.891551 TCCAATACAGACTACATACAGAGCA 59.108 40.000 0.00 0.00 0.00 4.26
4505 9648 6.392625 TCCAATACAGACTACATACAGAGC 57.607 41.667 0.00 0.00 0.00 4.09
4506 9649 8.855110 AGATTCCAATACAGACTACATACAGAG 58.145 37.037 0.00 0.00 0.00 3.35
4507 9650 8.768501 AGATTCCAATACAGACTACATACAGA 57.231 34.615 0.00 0.00 0.00 3.41
4508 9651 8.855110 AGAGATTCCAATACAGACTACATACAG 58.145 37.037 0.00 0.00 0.00 2.74
4509 9652 8.768501 AGAGATTCCAATACAGACTACATACA 57.231 34.615 0.00 0.00 0.00 2.29
4516 9659 9.660180 GACTTTTTAGAGATTCCAATACAGACT 57.340 33.333 0.00 0.00 0.00 3.24
4517 9660 9.660180 AGACTTTTTAGAGATTCCAATACAGAC 57.340 33.333 0.00 0.00 0.00 3.51
4535 9678 9.392259 CCTCCGTTCCTAAATATAAGACTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
4536 9679 7.991460 CCCTCCGTTCCTAAATATAAGACTTTT 59.009 37.037 0.00 0.00 0.00 2.27
4537 9680 7.346436 TCCCTCCGTTCCTAAATATAAGACTTT 59.654 37.037 0.00 0.00 0.00 2.66
4538 9681 6.842807 TCCCTCCGTTCCTAAATATAAGACTT 59.157 38.462 0.00 0.00 0.00 3.01
4539 9682 6.379579 TCCCTCCGTTCCTAAATATAAGACT 58.620 40.000 0.00 0.00 0.00 3.24
4540 9683 6.267242 ACTCCCTCCGTTCCTAAATATAAGAC 59.733 42.308 0.00 0.00 0.00 3.01
4541 9684 6.379579 ACTCCCTCCGTTCCTAAATATAAGA 58.620 40.000 0.00 0.00 0.00 2.10
4542 9685 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4543 9686 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
4544 9687 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
4545 9688 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
4546 9689 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
4547 9690 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4548 9691 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4549 9692 4.079558 ACATAGTACTCCCTCCGTTCCTAA 60.080 45.833 0.00 0.00 0.00 2.69
4550 9693 3.461085 ACATAGTACTCCCTCCGTTCCTA 59.539 47.826 0.00 0.00 0.00 2.94
4551 9694 2.244252 ACATAGTACTCCCTCCGTTCCT 59.756 50.000 0.00 0.00 0.00 3.36
4552 9695 2.664015 ACATAGTACTCCCTCCGTTCC 58.336 52.381 0.00 0.00 0.00 3.62
4553 9696 3.698040 TCAACATAGTACTCCCTCCGTTC 59.302 47.826 0.00 0.00 0.00 3.95
4554 9697 3.705051 TCAACATAGTACTCCCTCCGTT 58.295 45.455 0.00 0.00 0.00 4.44
4555 9698 3.377253 TCAACATAGTACTCCCTCCGT 57.623 47.619 0.00 0.00 0.00 4.69
4556 9699 3.889538 TCATCAACATAGTACTCCCTCCG 59.110 47.826 0.00 0.00 0.00 4.63
4557 9700 6.042093 TCAATCATCAACATAGTACTCCCTCC 59.958 42.308 0.00 0.00 0.00 4.30
4558 9701 7.055667 TCAATCATCAACATAGTACTCCCTC 57.944 40.000 0.00 0.00 0.00 4.30
4559 9702 7.623999 ATCAATCATCAACATAGTACTCCCT 57.376 36.000 0.00 0.00 0.00 4.20
4560 9703 9.593134 GATATCAATCATCAACATAGTACTCCC 57.407 37.037 0.00 0.00 31.93 4.30
4579 9894 7.121611 TGCAAGCAGAAAGATGAAAGATATCAA 59.878 33.333 5.32 0.00 32.06 2.57
4593 9908 2.268298 GGATGCAATGCAAGCAGAAAG 58.732 47.619 13.45 0.00 46.36 2.62
4611 9926 6.599244 CCTTTCATCAGTTATTAACAGCTGGA 59.401 38.462 19.93 2.00 0.00 3.86
4612 9927 6.599244 TCCTTTCATCAGTTATTAACAGCTGG 59.401 38.462 19.93 0.00 0.00 4.85
4616 9931 8.446273 CACAGTCCTTTCATCAGTTATTAACAG 58.554 37.037 9.15 1.21 0.00 3.16
5078 10397 4.518970 GGATCTTCAGTGGCTTGTTGTAAA 59.481 41.667 0.00 0.00 0.00 2.01
5232 10551 2.034254 CGAGATGTTGCACGAATAGCTG 60.034 50.000 0.00 0.00 0.00 4.24
5256 10575 2.743538 GCGACACCATGAGCAGCA 60.744 61.111 0.00 0.00 0.00 4.41
5257 10576 2.435586 AGCGACACCATGAGCAGC 60.436 61.111 0.00 0.00 0.00 5.25
5258 10577 2.104859 CCAGCGACACCATGAGCAG 61.105 63.158 0.00 0.00 0.00 4.24
5347 10681 2.489722 GGAAGAAGTTGCCCAGCTTAAG 59.510 50.000 0.00 0.00 31.89 1.85
5353 10687 0.251077 AGCAGGAAGAAGTTGCCCAG 60.251 55.000 0.00 0.00 38.58 4.45
5698 12118 5.124457 CCAAGTGGAGATATGTTCTTGGTTG 59.876 44.000 16.71 2.11 43.66 3.77
5741 12986 1.869767 GTCGATGATCTGGCAATGGTC 59.130 52.381 0.00 0.00 0.00 4.02
5759 13004 9.850628 TTGATCAAAATCTTGAAGATCAATGTC 57.149 29.630 8.32 5.70 45.50 3.06
5770 13015 8.931775 CATGCAAAATCTTGATCAAAATCTTGA 58.068 29.630 11.24 3.98 38.21 3.02
5771 13016 8.175069 CCATGCAAAATCTTGATCAAAATCTTG 58.825 33.333 9.88 6.53 34.14 3.02
5772 13017 7.881232 ACCATGCAAAATCTTGATCAAAATCTT 59.119 29.630 9.88 0.00 34.14 2.40
5773 13018 7.391620 ACCATGCAAAATCTTGATCAAAATCT 58.608 30.769 9.88 0.00 34.14 2.40
5774 13019 7.605410 ACCATGCAAAATCTTGATCAAAATC 57.395 32.000 9.88 0.00 34.14 2.17
5775 13020 7.989416 AACCATGCAAAATCTTGATCAAAAT 57.011 28.000 9.88 0.00 34.14 1.82
5776 13021 7.041235 GGAAACCATGCAAAATCTTGATCAAAA 60.041 33.333 9.88 0.00 34.14 2.44
5777 13022 6.427547 GGAAACCATGCAAAATCTTGATCAAA 59.572 34.615 9.88 1.39 34.14 2.69
5778 13023 5.933463 GGAAACCATGCAAAATCTTGATCAA 59.067 36.000 8.12 8.12 34.14 2.57
5779 13024 5.246656 AGGAAACCATGCAAAATCTTGATCA 59.753 36.000 0.00 0.00 34.14 2.92
5780 13025 5.727434 AGGAAACCATGCAAAATCTTGATC 58.273 37.500 0.00 0.00 34.14 2.92
5781 13026 5.482878 AGAGGAAACCATGCAAAATCTTGAT 59.517 36.000 0.00 0.00 34.14 2.57
5810 13055 7.861872 CCCTTTTTCGTTAACGGAAGATTTTTA 59.138 33.333 26.51 5.72 38.20 1.52
5857 13102 3.118992 AGCGATGCACACTTCTAAGATGA 60.119 43.478 0.00 0.00 0.00 2.92
5894 13146 6.918067 CTTTTCAAAAAGGAGGATAACCCT 57.082 37.500 7.24 0.00 41.41 4.34
6196 13631 9.762933 ACAAATTACTAAGCATGTGAACATTTT 57.237 25.926 0.00 0.00 33.61 1.82
6197 13632 9.762933 AACAAATTACTAAGCATGTGAACATTT 57.237 25.926 0.00 0.00 33.61 2.32
6417 15396 3.981212 TCGGGAGATATGGCATGATAGA 58.019 45.455 10.98 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.