Multiple sequence alignment - TraesCS3B01G028400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G028400 chr3B 100.000 3142 0 0 1 3142 12182749 12179608 0.000000e+00 5803.0
1 TraesCS3B01G028400 chr3B 90.973 1717 75 37 745 2435 27993793 27995455 0.000000e+00 2239.0
2 TraesCS3B01G028400 chr3B 80.391 1637 190 59 970 2563 14223578 14222030 0.000000e+00 1123.0
3 TraesCS3B01G028400 chr3B 82.086 1189 153 35 970 2144 12401300 12400158 0.000000e+00 961.0
4 TraesCS3B01G028400 chr3B 81.695 1180 151 38 970 2139 28082524 28081400 0.000000e+00 922.0
5 TraesCS3B01G028400 chr3B 87.048 664 48 21 17 673 797466032 797466664 0.000000e+00 715.0
6 TraesCS3B01G028400 chr3B 85.056 716 49 25 1 688 18816683 18815998 0.000000e+00 676.0
7 TraesCS3B01G028400 chr3B 91.972 436 31 4 2709 3142 27995637 27996070 2.680000e-170 608.0
8 TraesCS3B01G028400 chr3B 77.003 387 47 22 2278 2636 14111334 14110962 1.920000e-42 183.0
9 TraesCS3B01G028400 chr3B 79.783 277 27 14 2274 2523 28540402 28540128 1.160000e-39 174.0
10 TraesCS3B01G028400 chr3B 100.000 45 0 0 2645 2689 27995595 27995639 2.010000e-12 84.2
11 TraesCS3B01G028400 chrUn 92.497 2199 94 28 972 3142 35795027 35797182 0.000000e+00 3081.0
12 TraesCS3B01G028400 chrUn 93.224 1520 45 17 889 2404 35203121 35204586 0.000000e+00 2183.0
13 TraesCS3B01G028400 chrUn 81.454 1197 140 38 969 2151 307487769 307488897 0.000000e+00 905.0
14 TraesCS3B01G028400 chrUn 81.454 1197 140 38 969 2151 328828089 328829217 0.000000e+00 905.0
15 TraesCS3B01G028400 chrUn 81.150 1183 164 32 970 2139 35452400 35451264 0.000000e+00 894.0
16 TraesCS3B01G028400 chrUn 91.905 420 21 6 2053 2468 35209512 35209922 2.720000e-160 575.0
17 TraesCS3B01G028400 chrUn 93.466 352 17 4 2213 2563 305025544 305025890 4.650000e-143 518.0
18 TraesCS3B01G028400 chrUn 94.118 323 18 1 2821 3142 35204620 35204942 1.010000e-134 490.0
19 TraesCS3B01G028400 chrUn 95.502 289 9 1 889 1177 236914201 236913917 2.860000e-125 459.0
20 TraesCS3B01G028400 chrUn 96.032 126 2 1 689 811 35202951 35203076 5.310000e-48 202.0
21 TraesCS3B01G028400 chrUn 96.032 126 2 1 689 811 236914371 236914246 5.310000e-48 202.0
22 TraesCS3B01G028400 chr3D 88.294 2298 114 59 809 3025 5681572 5679349 0.000000e+00 2610.0
23 TraesCS3B01G028400 chr3D 91.088 662 21 14 47 696 613452793 613452158 0.000000e+00 861.0
24 TraesCS3B01G028400 chr3D 80.684 1170 150 46 998 2151 5609120 5610229 0.000000e+00 839.0
25 TraesCS3B01G028400 chr3D 90.738 637 22 12 47 671 17860568 17859957 0.000000e+00 815.0
26 TraesCS3B01G028400 chr3D 73.567 1082 154 78 1108 2151 578405219 578406206 3.070000e-75 292.0
27 TraesCS3B01G028400 chr3D 79.373 383 38 16 2278 2636 9880765 9880400 6.780000e-57 231.0
28 TraesCS3B01G028400 chr3D 79.112 383 39 11 2278 2636 9947258 9946893 3.150000e-55 226.0
29 TraesCS3B01G028400 chr3D 79.878 328 27 18 970 1295 9881951 9881661 1.480000e-48 204.0
30 TraesCS3B01G028400 chr3D 86.667 165 13 4 2275 2435 5677403 5677244 1.160000e-39 174.0
31 TraesCS3B01G028400 chr3D 78.988 257 38 14 1053 1300 29281746 29281995 9.020000e-36 161.0
32 TraesCS3B01G028400 chr3A 88.266 1534 75 47 929 2435 15603598 15605053 0.000000e+00 1738.0
33 TraesCS3B01G028400 chr3A 87.906 678 46 18 1 673 654801809 654801163 0.000000e+00 765.0
34 TraesCS3B01G028400 chr3A 96.970 429 13 0 260 688 747701205 747700777 0.000000e+00 721.0
35 TraesCS3B01G028400 chr3A 88.147 464 42 7 2644 3096 15605211 15605672 9.910000e-150 540.0
36 TraesCS3B01G028400 chr3A 82.099 324 36 16 970 1284 15780861 15780551 1.120000e-64 257.0
37 TraesCS3B01G028400 chr3A 81.911 293 41 7 998 1284 15695303 15695017 1.460000e-58 237.0
38 TraesCS3B01G028400 chr3A 82.609 138 9 3 2488 2621 15605088 15605214 1.190000e-19 108.0
39 TraesCS3B01G028400 chr3A 100.000 28 0 0 2422 2449 15605064 15605091 6.000000e-03 52.8
40 TraesCS3B01G028400 chr2A 84.530 989 113 22 1173 2150 19663167 19662208 0.000000e+00 942.0
41 TraesCS3B01G028400 chr2A 79.373 383 38 13 2278 2636 19662097 19661732 6.780000e-57 231.0
42 TraesCS3B01G028400 chr7D 91.006 656 22 13 44 688 555080080 555080709 0.000000e+00 850.0
43 TraesCS3B01G028400 chr7D 77.222 180 29 6 1108 1276 635765684 635765862 9.280000e-16 95.3
44 TraesCS3B01G028400 chr7D 71.944 499 78 29 1108 1577 636038719 636038254 4.320000e-14 89.8
45 TraesCS3B01G028400 chr6D 90.411 657 26 12 44 688 48864428 48865059 0.000000e+00 830.0
46 TraesCS3B01G028400 chr7B 88.525 671 42 17 1 666 664802230 664801590 0.000000e+00 780.0
47 TraesCS3B01G028400 chr1A 87.906 678 46 12 1 673 552339958 552339312 0.000000e+00 765.0
48 TraesCS3B01G028400 chr6B 87.389 674 50 11 1 669 144328076 144327433 0.000000e+00 741.0
49 TraesCS3B01G028400 chr6B 87.278 676 52 11 1 673 647451940 647451296 0.000000e+00 741.0
50 TraesCS3B01G028400 chr6B 87.168 678 51 12 1 673 34351166 34350520 0.000000e+00 737.0
51 TraesCS3B01G028400 chr5B 87.179 663 49 20 17 673 548986407 548987039 0.000000e+00 721.0
52 TraesCS3B01G028400 chr2B 86.033 673 58 18 24 690 774959965 774959323 0.000000e+00 689.0
53 TraesCS3B01G028400 chr6A 86.009 679 48 16 1 673 91972317 91971680 0.000000e+00 684.0
54 TraesCS3B01G028400 chr1B 84.306 720 54 26 1 691 520520957 520520268 0.000000e+00 649.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G028400 chr3B 12179608 12182749 3141 True 5803.000000 5803 100.0000 1 3142 1 chr3B.!!$R1 3141
1 TraesCS3B01G028400 chr3B 14222030 14223578 1548 True 1123.000000 1123 80.3910 970 2563 1 chr3B.!!$R4 1593
2 TraesCS3B01G028400 chr3B 27993793 27996070 2277 False 977.066667 2239 94.3150 745 3142 3 chr3B.!!$F2 2397
3 TraesCS3B01G028400 chr3B 12400158 12401300 1142 True 961.000000 961 82.0860 970 2144 1 chr3B.!!$R2 1174
4 TraesCS3B01G028400 chr3B 28081400 28082524 1124 True 922.000000 922 81.6950 970 2139 1 chr3B.!!$R6 1169
5 TraesCS3B01G028400 chr3B 797466032 797466664 632 False 715.000000 715 87.0480 17 673 1 chr3B.!!$F1 656
6 TraesCS3B01G028400 chr3B 18815998 18816683 685 True 676.000000 676 85.0560 1 688 1 chr3B.!!$R5 687
7 TraesCS3B01G028400 chrUn 35795027 35797182 2155 False 3081.000000 3081 92.4970 972 3142 1 chrUn.!!$F2 2170
8 TraesCS3B01G028400 chrUn 35202951 35204942 1991 False 958.333333 2183 94.4580 689 3142 3 chrUn.!!$F6 2453
9 TraesCS3B01G028400 chrUn 307487769 307488897 1128 False 905.000000 905 81.4540 969 2151 1 chrUn.!!$F4 1182
10 TraesCS3B01G028400 chrUn 328828089 328829217 1128 False 905.000000 905 81.4540 969 2151 1 chrUn.!!$F5 1182
11 TraesCS3B01G028400 chrUn 35451264 35452400 1136 True 894.000000 894 81.1500 970 2139 1 chrUn.!!$R1 1169
12 TraesCS3B01G028400 chr3D 5677244 5681572 4328 True 1392.000000 2610 87.4805 809 3025 2 chr3D.!!$R4 2216
13 TraesCS3B01G028400 chr3D 613452158 613452793 635 True 861.000000 861 91.0880 47 696 1 chr3D.!!$R3 649
14 TraesCS3B01G028400 chr3D 5609120 5610229 1109 False 839.000000 839 80.6840 998 2151 1 chr3D.!!$F1 1153
15 TraesCS3B01G028400 chr3D 17859957 17860568 611 True 815.000000 815 90.7380 47 671 1 chr3D.!!$R2 624
16 TraesCS3B01G028400 chr3D 578405219 578406206 987 False 292.000000 292 73.5670 1108 2151 1 chr3D.!!$F3 1043
17 TraesCS3B01G028400 chr3D 9880400 9881951 1551 True 217.500000 231 79.6255 970 2636 2 chr3D.!!$R5 1666
18 TraesCS3B01G028400 chr3A 654801163 654801809 646 True 765.000000 765 87.9060 1 673 1 chr3A.!!$R3 672
19 TraesCS3B01G028400 chr3A 15603598 15605672 2074 False 609.700000 1738 89.7555 929 3096 4 chr3A.!!$F1 2167
20 TraesCS3B01G028400 chr2A 19661732 19663167 1435 True 586.500000 942 81.9515 1173 2636 2 chr2A.!!$R1 1463
21 TraesCS3B01G028400 chr7D 555080080 555080709 629 False 850.000000 850 91.0060 44 688 1 chr7D.!!$F1 644
22 TraesCS3B01G028400 chr6D 48864428 48865059 631 False 830.000000 830 90.4110 44 688 1 chr6D.!!$F1 644
23 TraesCS3B01G028400 chr7B 664801590 664802230 640 True 780.000000 780 88.5250 1 666 1 chr7B.!!$R1 665
24 TraesCS3B01G028400 chr1A 552339312 552339958 646 True 765.000000 765 87.9060 1 673 1 chr1A.!!$R1 672
25 TraesCS3B01G028400 chr6B 144327433 144328076 643 True 741.000000 741 87.3890 1 669 1 chr6B.!!$R2 668
26 TraesCS3B01G028400 chr6B 647451296 647451940 644 True 741.000000 741 87.2780 1 673 1 chr6B.!!$R3 672
27 TraesCS3B01G028400 chr6B 34350520 34351166 646 True 737.000000 737 87.1680 1 673 1 chr6B.!!$R1 672
28 TraesCS3B01G028400 chr5B 548986407 548987039 632 False 721.000000 721 87.1790 17 673 1 chr5B.!!$F1 656
29 TraesCS3B01G028400 chr2B 774959323 774959965 642 True 689.000000 689 86.0330 24 690 1 chr2B.!!$R1 666
30 TraesCS3B01G028400 chr6A 91971680 91972317 637 True 684.000000 684 86.0090 1 673 1 chr6A.!!$R1 672
31 TraesCS3B01G028400 chr1B 520520268 520520957 689 True 649.000000 649 84.3060 1 691 1 chr1B.!!$R1 690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
933 1000 0.411452 TGGACCTCTGCTCTTCTCCT 59.589 55.0 0.00 0.00 0.0 3.69 F
1970 2183 0.961857 TGGTGGACATGCACATGAGC 60.962 55.0 17.19 8.32 41.2 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2117 2342 1.375396 CAATGCGTCGGACCAAGGA 60.375 57.895 1.91 0.0 0.0 3.36 R
2788 3125 1.627297 ATCCTTGGCCTCCGGAACTC 61.627 60.000 5.23 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 176 1.871039 TCAACTACGGCTGCAACTTTC 59.129 47.619 0.50 0.00 0.00 2.62
200 204 0.824595 TGTGCAGTGCCATTGAAGCT 60.825 50.000 13.72 0.00 0.00 3.74
303 309 3.945981 TGCAACACTTCTATACGTGGA 57.054 42.857 0.00 0.00 35.51 4.02
454 468 3.245658 GCTGTAGGTAGGGGATGGATCTA 60.246 52.174 0.00 0.00 0.00 1.98
520 556 2.579201 CCGGCGATGGAGTCTGTT 59.421 61.111 9.30 0.00 0.00 3.16
791 844 4.736126 TGGCTCGTTTATCATGAAGAGA 57.264 40.909 0.00 0.00 0.00 3.10
818 874 1.575419 ACTACGTTAATGCAGGGGGA 58.425 50.000 0.00 0.00 0.00 4.81
843 899 1.102809 TGGAACAGTGGCAAGTGCTG 61.103 55.000 2.85 1.65 41.70 4.41
844 900 0.819259 GGAACAGTGGCAAGTGCTGA 60.819 55.000 9.53 0.00 41.70 4.26
868 928 9.494271 TGATAATGAGGACAGAAGCATTTATAC 57.506 33.333 0.00 0.00 33.45 1.47
932 999 1.206849 CTTGGACCTCTGCTCTTCTCC 59.793 57.143 0.00 0.00 0.00 3.71
933 1000 0.411452 TGGACCTCTGCTCTTCTCCT 59.589 55.000 0.00 0.00 0.00 3.69
934 1001 1.111277 GGACCTCTGCTCTTCTCCTC 58.889 60.000 0.00 0.00 0.00 3.71
935 1002 1.341976 GGACCTCTGCTCTTCTCCTCT 60.342 57.143 0.00 0.00 0.00 3.69
1970 2183 0.961857 TGGTGGACATGCACATGAGC 60.962 55.000 17.19 8.32 41.20 4.26
2117 2342 1.140589 CCGCATCGACAAGCTCTCT 59.859 57.895 0.00 0.00 0.00 3.10
2185 2439 3.234386 GCAGTTCGTGGTTGCTTATTTC 58.766 45.455 0.00 0.00 35.05 2.17
2261 2521 5.181748 GCAGTTCATCTTTGATGGTAGTCT 58.818 41.667 7.58 0.00 0.00 3.24
2267 2527 7.921041 TCATCTTTGATGGTAGTCTTATCCT 57.079 36.000 7.58 0.00 0.00 3.24
2268 2528 7.730084 TCATCTTTGATGGTAGTCTTATCCTG 58.270 38.462 7.58 0.00 0.00 3.86
2309 2582 7.605410 AATGTCGTTGTAGGGTACTTAAATG 57.395 36.000 0.00 0.00 0.00 2.32
2310 2583 6.100404 TGTCGTTGTAGGGTACTTAAATGT 57.900 37.500 0.00 0.00 0.00 2.71
2311 2584 6.158598 TGTCGTTGTAGGGTACTTAAATGTC 58.841 40.000 0.00 0.00 0.00 3.06
2312 2585 5.287035 GTCGTTGTAGGGTACTTAAATGTCG 59.713 44.000 0.00 0.00 0.00 4.35
2313 2586 5.048083 TCGTTGTAGGGTACTTAAATGTCGT 60.048 40.000 0.00 0.00 0.00 4.34
2316 2589 6.100404 TGTAGGGTACTTAAATGTCGTTGT 57.900 37.500 0.00 0.00 0.00 3.32
2363 2636 4.482386 CTGTGGTGAAATGCATCTTCTTG 58.518 43.478 16.99 0.00 0.00 3.02
2371 2644 0.592637 TGCATCTTCTTGCGGTGTTG 59.407 50.000 0.00 0.00 45.77 3.33
2487 2792 0.465287 GCGGGTTTACGGGAGGATAA 59.535 55.000 0.00 0.00 0.00 1.75
2757 3092 4.342772 CTTTGAACTGGAACACTGTTTCG 58.657 43.478 0.00 0.00 40.74 3.46
2758 3093 3.254470 TGAACTGGAACACTGTTTCGA 57.746 42.857 0.00 0.00 40.74 3.71
2759 3094 3.601435 TGAACTGGAACACTGTTTCGAA 58.399 40.909 0.00 0.00 40.74 3.71
2760 3095 4.004314 TGAACTGGAACACTGTTTCGAAA 58.996 39.130 6.47 6.47 40.74 3.46
2787 3124 4.041567 TCTCTGATTGCAGGACTTTGGTAA 59.958 41.667 0.00 0.00 42.53 2.85
2788 3125 4.326826 TCTGATTGCAGGACTTTGGTAAG 58.673 43.478 0.00 0.00 42.53 2.34
2814 3151 1.678101 CGGAGGCCAAGGATTTGATTC 59.322 52.381 5.01 0.00 36.36 2.52
2861 3219 4.111198 CGATCTTGTCTTCAGTCCTCATG 58.889 47.826 0.00 0.00 0.00 3.07
2862 3220 4.381398 CGATCTTGTCTTCAGTCCTCATGT 60.381 45.833 0.00 0.00 0.00 3.21
2937 3295 5.978814 TGCTAAGAAATCCTTCTCCAGTAC 58.021 41.667 0.00 0.00 41.23 2.73
2953 3312 3.181471 CCAGTACATCTTCCCTAGCTGTG 60.181 52.174 0.00 0.00 34.28 3.66
3043 3837 3.617263 GGCCAAACTTATCTCTGTACACG 59.383 47.826 0.00 0.00 0.00 4.49
3125 3923 7.447238 CCCCACAAAAGAAATAGTGACTTCTAA 59.553 37.037 0.00 0.00 33.99 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 69 1.780860 GACAACGATGTTTTGCTGCAC 59.219 47.619 0.00 0.00 40.74 4.57
172 176 1.069596 GCACTGCACAAAAAGGGGG 59.930 57.895 0.00 0.00 0.00 5.40
200 204 8.635765 AAAGCTTCAACCATAGACATAGAAAA 57.364 30.769 0.00 0.00 0.00 2.29
257 261 4.084328 CGTCACCTAGAAAAGCTTCAACAG 60.084 45.833 0.00 0.00 33.64 3.16
258 262 3.807622 CGTCACCTAGAAAAGCTTCAACA 59.192 43.478 0.00 0.00 33.64 3.33
303 309 2.665000 CGCTATGCCCGGATCCAT 59.335 61.111 13.41 5.16 0.00 3.41
364 372 1.069765 CCACCACAAGCTCTGTCGT 59.930 57.895 0.00 0.00 35.47 4.34
369 377 3.177884 TGGGCCACCACAAGCTCT 61.178 61.111 0.00 0.00 43.37 4.09
520 556 4.082523 GGCTGCGACTAGGCCACA 62.083 66.667 5.01 0.00 44.69 4.17
550 589 4.899239 GCCTAGTGCGCGCATCCT 62.899 66.667 38.62 30.81 0.00 3.24
764 817 6.374053 TCTTCATGATAAACGAGCCAAAATGA 59.626 34.615 0.00 0.00 0.00 2.57
791 844 6.208204 CCCCTGCATTAACGTAGTAGTACTAT 59.792 42.308 13.09 0.62 45.00 2.12
818 874 1.682854 CTTGCCACTGTTCCACACAAT 59.317 47.619 0.00 0.00 33.87 2.71
843 899 9.717942 AGTATAAATGCTTCTGTCCTCATTATC 57.282 33.333 0.00 0.00 0.00 1.75
844 900 9.499479 CAGTATAAATGCTTCTGTCCTCATTAT 57.501 33.333 0.00 0.00 0.00 1.28
868 928 4.258702 ACTGTTCCAAGTACTACTGCAG 57.741 45.455 13.48 13.48 0.00 4.41
932 999 4.836825 AGTTGTGAGAGAGAGAGAGAGAG 58.163 47.826 0.00 0.00 0.00 3.20
933 1000 4.323485 GGAGTTGTGAGAGAGAGAGAGAGA 60.323 50.000 0.00 0.00 0.00 3.10
934 1001 3.941483 GGAGTTGTGAGAGAGAGAGAGAG 59.059 52.174 0.00 0.00 0.00 3.20
935 1002 3.587061 AGGAGTTGTGAGAGAGAGAGAGA 59.413 47.826 0.00 0.00 0.00 3.10
1142 1230 2.456840 CCCCTGGGTCTCCTCCTT 59.543 66.667 12.71 0.00 0.00 3.36
2117 2342 1.375396 CAATGCGTCGGACCAAGGA 60.375 57.895 1.91 0.00 0.00 3.36
2185 2439 4.566987 ACTTAGTTTAAGCTGGAACTCCG 58.433 43.478 15.84 11.53 39.39 4.63
2261 2521 6.869206 AAAGTTGACTACTAGGCAGGATAA 57.131 37.500 0.00 0.00 32.83 1.75
2267 2527 6.097356 CGACATTAAAGTTGACTACTAGGCA 58.903 40.000 0.00 0.00 35.54 4.75
2268 2528 6.098017 ACGACATTAAAGTTGACTACTAGGC 58.902 40.000 5.10 0.00 35.54 3.93
2309 2582 7.345192 CACAAAGCATAATATCCTACAACGAC 58.655 38.462 0.00 0.00 0.00 4.34
2310 2583 6.018262 GCACAAAGCATAATATCCTACAACGA 60.018 38.462 0.00 0.00 44.79 3.85
2311 2584 6.136071 GCACAAAGCATAATATCCTACAACG 58.864 40.000 0.00 0.00 44.79 4.10
2363 2636 3.131240 GTTGGAATGATACAACACCGC 57.869 47.619 7.71 0.00 44.70 5.68
2371 2644 4.439305 TGCTTGCAAGTTGGAATGATAC 57.561 40.909 26.55 6.81 0.00 2.24
2487 2792 1.978361 AGGCCTCCTTTCTTCCTCAT 58.022 50.000 0.00 0.00 0.00 2.90
2589 2918 5.896106 TCTGAGAGAAGCTTCATCAGGAATA 59.104 40.000 36.33 25.25 40.63 1.75
2757 3092 6.264841 AGTCCTGCAATCAGAGAAAATTTC 57.735 37.500 0.00 0.00 42.95 2.17
2758 3093 6.661304 AAGTCCTGCAATCAGAGAAAATTT 57.339 33.333 0.00 0.00 42.95 1.82
2759 3094 6.453092 CAAAGTCCTGCAATCAGAGAAAATT 58.547 36.000 0.00 0.00 42.95 1.82
2760 3095 5.047519 CCAAAGTCCTGCAATCAGAGAAAAT 60.048 40.000 0.00 0.00 42.95 1.82
2787 3124 2.294078 CCTTGGCCTCCGGAACTCT 61.294 63.158 5.23 0.00 0.00 3.24
2788 3125 1.627297 ATCCTTGGCCTCCGGAACTC 61.627 60.000 5.23 0.00 0.00 3.01
2814 3151 1.959042 ATCAGCAAAGTAGGATGCCG 58.041 50.000 0.00 0.00 43.57 5.69
2861 3219 4.458989 TGGAATGTGCTCAATCCTGTAAAC 59.541 41.667 20.52 0.00 42.43 2.01
2862 3220 4.661222 TGGAATGTGCTCAATCCTGTAAA 58.339 39.130 20.52 0.93 42.43 2.01
3043 3837 8.664211 ACACTTTATTATTAGCAGTCTAAGCC 57.336 34.615 0.00 0.00 38.11 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.