Multiple sequence alignment - TraesCS3B01G028000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G028000 chr3B 100.000 3191 0 0 1 3191 12110513 12107323 0.000000e+00 5893.0
1 TraesCS3B01G028000 chr3B 88.947 1149 77 26 1452 2599 27866333 27865234 0.000000e+00 1373.0
2 TraesCS3B01G028000 chr3B 96.429 392 12 2 87 478 27868623 27868234 0.000000e+00 645.0
3 TraesCS3B01G028000 chr3B 93.532 402 20 2 509 906 27868237 27867838 7.620000e-166 593.0
4 TraesCS3B01G028000 chr3B 86.585 410 36 13 2132 2538 27861501 27861108 4.890000e-118 435.0
5 TraesCS3B01G028000 chr3B 79.882 338 35 7 2816 3123 27864743 27864409 1.930000e-52 217.0
6 TraesCS3B01G028000 chr3B 84.138 145 18 1 281 420 14098159 14098303 5.550000e-28 135.0
7 TraesCS3B01G028000 chr3B 75.949 237 33 13 3 233 27891705 27891923 2.030000e-17 100.0
8 TraesCS3B01G028000 chr3A 87.809 1132 93 18 1425 2538 15478253 15477149 0.000000e+00 1284.0
9 TraesCS3B01G028000 chr3A 83.666 1102 95 38 1451 2538 15570610 15569580 0.000000e+00 959.0
10 TraesCS3B01G028000 chr3A 80.645 341 31 9 2811 3119 15476514 15476177 6.880000e-57 231.0
11 TraesCS3B01G028000 chr3A 95.455 44 2 0 2614 2657 17261159 17261202 1.590000e-08 71.3
12 TraesCS3B01G028000 chrUn 90.775 748 47 10 1423 2167 35208381 35209109 0.000000e+00 979.0
13 TraesCS3B01G028000 chrUn 83.784 1036 85 26 1471 2494 34624204 34625168 0.000000e+00 905.0
14 TraesCS3B01G028000 chrUn 95.312 448 19 2 31 478 35206432 35206877 0.000000e+00 710.0
15 TraesCS3B01G028000 chrUn 94.045 403 21 2 505 906 35206870 35207270 2.720000e-170 608.0
16 TraesCS3B01G028000 chrUn 86.038 530 33 20 2470 2977 261815027 261814517 6.060000e-147 531.0
17 TraesCS3B01G028000 chrUn 86.038 530 33 20 2470 2977 277277523 277277013 6.060000e-147 531.0
18 TraesCS3B01G028000 chrUn 77.970 404 28 23 2391 2762 35209140 35209514 2.510000e-46 196.0
19 TraesCS3B01G028000 chrUn 78.873 213 27 9 2618 2816 34625204 34625412 9.290000e-26 128.0
20 TraesCS3B01G028000 chrUn 78.899 109 13 2 3011 3110 34625836 34625943 7.390000e-07 65.8
21 TraesCS3B01G028000 chr3D 91.084 729 47 3 1471 2193 5725764 5726480 0.000000e+00 970.0
22 TraesCS3B01G028000 chr3D 87.023 131 10 5 2624 2748 5726825 5726954 1.190000e-29 141.0
23 TraesCS3B01G028000 chr3D 83.871 155 14 3 2974 3119 5727485 5727637 1.540000e-28 137.0
24 TraesCS3B01G028000 chr3D 77.311 238 32 15 2 233 5661015 5661236 1.550000e-23 121.0
25 TraesCS3B01G028000 chr3D 87.500 96 10 2 2880 2974 5727359 5727453 3.370000e-20 110.0
26 TraesCS3B01G028000 chr3D 90.541 74 7 0 2303 2376 5726603 5726676 7.280000e-17 99.0
27 TraesCS3B01G028000 chr1B 86.792 530 30 16 2470 2977 364950017 364950528 3.600000e-154 555.0
28 TraesCS3B01G028000 chr1B 92.339 248 12 5 2730 2977 105093633 105093873 2.360000e-91 346.0
29 TraesCS3B01G028000 chr2B 83.585 530 31 25 2470 2977 277920609 277920114 2.260000e-121 446.0
30 TraesCS3B01G028000 chr2D 80.040 501 95 5 909 1406 369885102 369885600 1.810000e-97 366.0
31 TraesCS3B01G028000 chr2D 84.821 112 12 3 1924 2035 44535172 44535066 1.210000e-19 108.0
32 TraesCS3B01G028000 chr4B 93.548 248 9 5 2730 2977 618125308 618125068 2.340000e-96 363.0
33 TraesCS3B01G028000 chr5D 82.997 347 23 11 1851 2190 524484685 524485002 6.740000e-72 281.0
34 TraesCS3B01G028000 chr5D 94.545 110 6 0 1868 1977 217741909 217742018 1.520000e-38 171.0
35 TraesCS3B01G028000 chr2A 87.719 171 10 4 2614 2774 463408356 463408525 4.200000e-44 189.0
36 TraesCS3B01G028000 chr2A 87.135 171 11 5 2614 2774 463487817 463487986 1.960000e-42 183.0
37 TraesCS3B01G028000 chr2A 86.550 171 12 5 2614 2774 463560459 463560628 9.100000e-41 178.0
38 TraesCS3B01G028000 chr2A 79.646 113 14 4 2429 2540 463408182 463408286 4.420000e-09 73.1
39 TraesCS3B01G028000 chr2A 78.070 114 14 6 2429 2540 463487643 463487747 9.560000e-06 62.1
40 TraesCS3B01G028000 chr2A 78.070 114 14 6 2429 2540 463560285 463560389 9.560000e-06 62.1
41 TraesCS3B01G028000 chr4A 87.421 159 9 5 2614 2762 544547300 544547457 4.230000e-39 172.0
42 TraesCS3B01G028000 chr4A 92.793 111 8 0 2052 2162 5968913 5969023 9.160000e-36 161.0
43 TraesCS3B01G028000 chr7B 78.065 310 34 16 2447 2747 376694742 376694458 7.080000e-37 165.0
44 TraesCS3B01G028000 chr5B 77.500 320 32 21 2441 2748 308733631 308733922 4.260000e-34 156.0
45 TraesCS3B01G028000 chr6B 76.849 311 38 19 2447 2748 10020799 10020514 9.230000e-31 145.0
46 TraesCS3B01G028000 chr6B 77.936 281 27 19 2322 2599 694874806 694874558 3.320000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G028000 chr3B 12107323 12110513 3190 True 5893.000000 5893 100.000000 1 3191 1 chr3B.!!$R1 3190
1 TraesCS3B01G028000 chr3B 27861108 27868623 7515 True 652.600000 1373 89.075000 87 3123 5 chr3B.!!$R2 3036
2 TraesCS3B01G028000 chr3A 15569580 15570610 1030 True 959.000000 959 83.666000 1451 2538 1 chr3A.!!$R1 1087
3 TraesCS3B01G028000 chr3A 15476177 15478253 2076 True 757.500000 1284 84.227000 1425 3119 2 chr3A.!!$R2 1694
4 TraesCS3B01G028000 chrUn 35206432 35209514 3082 False 623.250000 979 89.525500 31 2762 4 chrUn.!!$F2 2731
5 TraesCS3B01G028000 chrUn 261814517 261815027 510 True 531.000000 531 86.038000 2470 2977 1 chrUn.!!$R1 507
6 TraesCS3B01G028000 chrUn 277277013 277277523 510 True 531.000000 531 86.038000 2470 2977 1 chrUn.!!$R2 507
7 TraesCS3B01G028000 chrUn 34624204 34625943 1739 False 366.266667 905 80.518667 1471 3110 3 chrUn.!!$F1 1639
8 TraesCS3B01G028000 chr3D 5725764 5727637 1873 False 291.400000 970 88.003800 1471 3119 5 chr3D.!!$F2 1648
9 TraesCS3B01G028000 chr1B 364950017 364950528 511 False 555.000000 555 86.792000 2470 2977 1 chr1B.!!$F2 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
496 497 0.179086 AAACCAAGCCAAGCCAAACG 60.179 50.0 0.0 0.0 0.0 3.6 F
1084 2101 0.030297 AGAGGCTGGGATGGTCTGAT 60.030 55.0 0.0 0.0 0.0 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1342 2359 0.038251 GGGCTGTAGTGCAAAAAGGC 60.038 55.0 5.68 5.68 34.04 4.35 R
2384 3854 0.038251 GATCGGCTGCATATCGACCA 60.038 55.0 0.50 0.00 35.70 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.843334 CCTACAAATTCGACTACTCTAATATCC 57.157 37.037 0.00 0.00 0.00 2.59
175 176 3.355378 AGATGCACATTTCGATTTCCCA 58.645 40.909 0.00 0.00 0.00 4.37
253 254 1.102154 TGGGCATCCATACTTTTGCG 58.898 50.000 0.00 0.00 38.32 4.85
367 368 0.538584 CTGTGAGCTGATGGTGCCTA 59.461 55.000 0.00 0.00 0.00 3.93
399 400 2.683968 TGACGGTATCACAGTTTCTGC 58.316 47.619 0.00 0.00 34.37 4.26
472 473 2.222445 CCGTTCGTTCGTGGAGAAAAAT 59.778 45.455 0.00 0.00 41.10 1.82
473 474 3.466836 CGTTCGTTCGTGGAGAAAAATC 58.533 45.455 0.00 0.00 41.10 2.17
474 475 3.060138 CGTTCGTTCGTGGAGAAAAATCA 60.060 43.478 0.00 0.00 41.10 2.57
475 476 4.209112 GTTCGTTCGTGGAGAAAAATCAC 58.791 43.478 0.00 0.00 41.10 3.06
476 477 2.803956 TCGTTCGTGGAGAAAAATCACC 59.196 45.455 0.00 0.00 41.10 4.02
477 478 2.546368 CGTTCGTGGAGAAAAATCACCA 59.454 45.455 0.00 0.00 41.10 4.17
478 479 3.002862 CGTTCGTGGAGAAAAATCACCAA 59.997 43.478 0.00 0.00 41.10 3.67
479 480 4.496673 CGTTCGTGGAGAAAAATCACCAAA 60.497 41.667 0.00 0.00 41.10 3.28
480 481 4.561735 TCGTGGAGAAAAATCACCAAAC 57.438 40.909 0.00 0.00 32.42 2.93
481 482 3.316868 TCGTGGAGAAAAATCACCAAACC 59.683 43.478 0.00 0.00 32.42 3.27
482 483 3.067461 CGTGGAGAAAAATCACCAAACCA 59.933 43.478 0.00 0.00 32.42 3.67
483 484 4.440802 CGTGGAGAAAAATCACCAAACCAA 60.441 41.667 0.00 0.00 32.42 3.67
484 485 5.049828 GTGGAGAAAAATCACCAAACCAAG 58.950 41.667 0.00 0.00 32.42 3.61
485 486 4.058124 GGAGAAAAATCACCAAACCAAGC 58.942 43.478 0.00 0.00 0.00 4.01
486 487 4.058124 GAGAAAAATCACCAAACCAAGCC 58.942 43.478 0.00 0.00 0.00 4.35
487 488 3.454082 AGAAAAATCACCAAACCAAGCCA 59.546 39.130 0.00 0.00 0.00 4.75
488 489 3.922171 AAAATCACCAAACCAAGCCAA 57.078 38.095 0.00 0.00 0.00 4.52
489 490 3.473923 AAATCACCAAACCAAGCCAAG 57.526 42.857 0.00 0.00 0.00 3.61
490 491 0.681175 ATCACCAAACCAAGCCAAGC 59.319 50.000 0.00 0.00 0.00 4.01
491 492 1.069596 CACCAAACCAAGCCAAGCC 59.930 57.895 0.00 0.00 0.00 4.35
492 493 1.382420 ACCAAACCAAGCCAAGCCA 60.382 52.632 0.00 0.00 0.00 4.75
493 494 0.980231 ACCAAACCAAGCCAAGCCAA 60.980 50.000 0.00 0.00 0.00 4.52
494 495 0.179936 CCAAACCAAGCCAAGCCAAA 59.820 50.000 0.00 0.00 0.00 3.28
495 496 1.298602 CAAACCAAGCCAAGCCAAAC 58.701 50.000 0.00 0.00 0.00 2.93
496 497 0.179086 AAACCAAGCCAAGCCAAACG 60.179 50.000 0.00 0.00 0.00 3.60
497 498 1.040339 AACCAAGCCAAGCCAAACGA 61.040 50.000 0.00 0.00 0.00 3.85
498 499 1.007387 CCAAGCCAAGCCAAACGAC 60.007 57.895 0.00 0.00 0.00 4.34
499 500 1.370414 CAAGCCAAGCCAAACGACG 60.370 57.895 0.00 0.00 0.00 5.12
500 501 3.194272 AAGCCAAGCCAAACGACGC 62.194 57.895 0.00 0.00 0.00 5.19
501 502 4.700365 GCCAAGCCAAACGACGCC 62.700 66.667 0.00 0.00 0.00 5.68
502 503 4.038080 CCAAGCCAAACGACGCCC 62.038 66.667 0.00 0.00 0.00 6.13
503 504 4.038080 CAAGCCAAACGACGCCCC 62.038 66.667 0.00 0.00 0.00 5.80
504 505 4.572571 AAGCCAAACGACGCCCCA 62.573 61.111 0.00 0.00 0.00 4.96
505 506 4.572571 AGCCAAACGACGCCCCAA 62.573 61.111 0.00 0.00 0.00 4.12
506 507 4.038080 GCCAAACGACGCCCCAAG 62.038 66.667 0.00 0.00 0.00 3.61
613 615 2.178521 GCGGCGTCTTCTTCTCGA 59.821 61.111 9.37 0.00 0.00 4.04
679 681 3.461773 CGGAGATGGCTGGTCGGT 61.462 66.667 0.00 0.00 0.00 4.69
719 721 2.877786 CTGCACGTGGGCAATTCATATA 59.122 45.455 18.88 0.00 44.40 0.86
720 722 3.485394 TGCACGTGGGCAATTCATATAT 58.515 40.909 18.88 0.00 41.65 0.86
866 872 1.000385 CTTGCCGAGCACAAAATTGGA 60.000 47.619 0.00 0.00 38.71 3.53
917 1474 0.676736 TTAAGGGCAAAAACGGGCAG 59.323 50.000 0.00 0.00 0.00 4.85
922 1479 2.339712 CAAAAACGGGCAGGGCTG 59.660 61.111 0.00 0.00 0.00 4.85
932 1489 3.521605 CAGGGCTGCATGACATGG 58.478 61.111 17.03 2.63 30.63 3.66
951 1968 2.915738 GAGATGTTGCTCCTTGCTTG 57.084 50.000 0.00 0.00 43.37 4.01
952 1969 1.471684 GAGATGTTGCTCCTTGCTTGG 59.528 52.381 0.00 0.00 43.37 3.61
953 1970 0.529378 GATGTTGCTCCTTGCTTGGG 59.471 55.000 0.00 0.00 43.37 4.12
954 1971 1.538687 ATGTTGCTCCTTGCTTGGGC 61.539 55.000 0.00 0.00 43.37 5.36
955 1972 2.985282 TTGCTCCTTGCTTGGGCG 60.985 61.111 0.00 0.00 43.37 6.13
956 1973 3.490031 TTGCTCCTTGCTTGGGCGA 62.490 57.895 0.00 0.00 43.37 5.54
957 1974 3.130160 GCTCCTTGCTTGGGCGAG 61.130 66.667 0.00 0.00 46.67 5.03
960 1977 2.674380 CCTTGCTTGGGCGAGCTT 60.674 61.111 11.89 0.00 45.97 3.74
961 1978 2.270986 CCTTGCTTGGGCGAGCTTT 61.271 57.895 11.89 0.00 45.97 3.51
963 1980 1.228245 TTGCTTGGGCGAGCTTTCT 60.228 52.632 11.89 0.00 43.11 2.52
964 1981 1.237285 TTGCTTGGGCGAGCTTTCTC 61.237 55.000 11.89 0.00 43.11 2.87
972 1989 2.261671 GAGCTTTCTCGGGCGTCA 59.738 61.111 0.00 0.00 0.00 4.35
973 1990 1.374252 GAGCTTTCTCGGGCGTCAA 60.374 57.895 0.00 0.00 0.00 3.18
974 1991 0.741221 GAGCTTTCTCGGGCGTCAAT 60.741 55.000 0.00 0.00 0.00 2.57
975 1992 1.021390 AGCTTTCTCGGGCGTCAATG 61.021 55.000 0.00 0.00 0.00 2.82
978 1995 0.953471 TTTCTCGGGCGTCAATGGTG 60.953 55.000 0.00 0.00 0.00 4.17
979 1996 2.047274 CTCGGGCGTCAATGGTGT 60.047 61.111 0.00 0.00 0.00 4.16
983 2000 0.672401 CGGGCGTCAATGGTGTAGTT 60.672 55.000 0.00 0.00 0.00 2.24
985 2002 2.277084 GGGCGTCAATGGTGTAGTTAG 58.723 52.381 0.00 0.00 0.00 2.34
987 2004 3.187700 GGCGTCAATGGTGTAGTTAGAG 58.812 50.000 0.00 0.00 0.00 2.43
988 2005 2.603560 GCGTCAATGGTGTAGTTAGAGC 59.396 50.000 0.00 0.00 0.00 4.09
989 2006 3.676324 GCGTCAATGGTGTAGTTAGAGCT 60.676 47.826 0.00 0.00 0.00 4.09
990 2007 4.495422 CGTCAATGGTGTAGTTAGAGCTT 58.505 43.478 0.00 0.00 0.00 3.74
991 2008 4.327357 CGTCAATGGTGTAGTTAGAGCTTG 59.673 45.833 0.00 0.00 0.00 4.01
992 2009 5.238583 GTCAATGGTGTAGTTAGAGCTTGT 58.761 41.667 0.00 0.00 0.00 3.16
993 2010 5.120830 GTCAATGGTGTAGTTAGAGCTTGTG 59.879 44.000 0.00 0.00 0.00 3.33
994 2011 3.040147 TGGTGTAGTTAGAGCTTGTGC 57.960 47.619 0.00 0.00 40.05 4.57
995 2012 2.367241 TGGTGTAGTTAGAGCTTGTGCA 59.633 45.455 0.00 0.00 42.74 4.57
997 2014 3.372206 GGTGTAGTTAGAGCTTGTGCATG 59.628 47.826 0.00 0.00 42.74 4.06
998 2015 3.002791 TGTAGTTAGAGCTTGTGCATGC 58.997 45.455 11.82 11.82 42.74 4.06
1000 2017 1.078709 GTTAGAGCTTGTGCATGCGA 58.921 50.000 14.09 0.00 42.74 5.10
1002 2019 1.292992 TAGAGCTTGTGCATGCGATG 58.707 50.000 14.09 5.68 42.74 3.84
1003 2020 1.063649 GAGCTTGTGCATGCGATGG 59.936 57.895 14.09 4.74 42.74 3.51
1005 2022 2.802792 CTTGTGCATGCGATGGGG 59.197 61.111 14.09 0.00 0.00 4.96
1008 2025 1.875420 TTGTGCATGCGATGGGGTTG 61.875 55.000 14.09 0.00 0.00 3.77
1011 2028 2.802792 CATGCGATGGGGTTGCTG 59.197 61.111 0.00 0.00 38.13 4.41
1012 2029 3.142838 ATGCGATGGGGTTGCTGC 61.143 61.111 0.00 0.00 38.13 5.25
1050 2067 0.523072 CCTTGGGCATCAACAAGACG 59.477 55.000 6.02 0.00 45.22 4.18
1051 2068 1.522668 CTTGGGCATCAACAAGACGA 58.477 50.000 0.00 0.00 45.22 4.20
1052 2069 1.466167 CTTGGGCATCAACAAGACGAG 59.534 52.381 0.00 0.00 45.22 4.18
1053 2070 0.684535 TGGGCATCAACAAGACGAGA 59.315 50.000 0.00 0.00 0.00 4.04
1054 2071 1.079503 GGGCATCAACAAGACGAGAC 58.920 55.000 0.00 0.00 0.00 3.36
1055 2072 1.338200 GGGCATCAACAAGACGAGACT 60.338 52.381 0.00 0.00 0.00 3.24
1056 2073 1.996191 GGCATCAACAAGACGAGACTC 59.004 52.381 0.00 0.00 0.00 3.36
1057 2074 2.610479 GGCATCAACAAGACGAGACTCA 60.610 50.000 2.82 0.00 0.00 3.41
1058 2075 3.059884 GCATCAACAAGACGAGACTCAA 58.940 45.455 2.82 0.00 0.00 3.02
1059 2076 3.494626 GCATCAACAAGACGAGACTCAAA 59.505 43.478 2.82 0.00 0.00 2.69
1060 2077 4.376819 GCATCAACAAGACGAGACTCAAAG 60.377 45.833 2.82 0.00 0.00 2.77
1061 2078 3.717707 TCAACAAGACGAGACTCAAAGG 58.282 45.455 2.82 0.00 0.00 3.11
1062 2079 2.802816 CAACAAGACGAGACTCAAAGGG 59.197 50.000 2.82 0.00 0.00 3.95
1063 2080 1.270358 ACAAGACGAGACTCAAAGGGC 60.270 52.381 2.82 0.00 0.00 5.19
1064 2081 1.048601 AAGACGAGACTCAAAGGGCA 58.951 50.000 2.82 0.00 0.00 5.36
1065 2082 1.048601 AGACGAGACTCAAAGGGCAA 58.951 50.000 2.82 0.00 0.00 4.52
1066 2083 1.001406 AGACGAGACTCAAAGGGCAAG 59.999 52.381 2.82 0.00 0.00 4.01
1067 2084 1.000955 GACGAGACTCAAAGGGCAAGA 59.999 52.381 2.82 0.00 0.00 3.02
1068 2085 1.001406 ACGAGACTCAAAGGGCAAGAG 59.999 52.381 2.82 0.00 35.56 2.85
1069 2086 1.674221 CGAGACTCAAAGGGCAAGAGG 60.674 57.143 2.82 0.00 33.76 3.69
1070 2087 0.037447 AGACTCAAAGGGCAAGAGGC 59.963 55.000 0.00 0.00 43.74 4.70
1071 2088 0.037447 GACTCAAAGGGCAAGAGGCT 59.963 55.000 0.00 0.00 44.01 4.58
1072 2089 0.251077 ACTCAAAGGGCAAGAGGCTG 60.251 55.000 0.00 0.00 44.01 4.85
1073 2090 0.964358 CTCAAAGGGCAAGAGGCTGG 60.964 60.000 0.00 0.00 44.01 4.85
1074 2091 1.980772 CAAAGGGCAAGAGGCTGGG 60.981 63.158 0.00 0.00 44.01 4.45
1075 2092 2.162906 AAAGGGCAAGAGGCTGGGA 61.163 57.895 0.00 0.00 44.01 4.37
1076 2093 1.513087 AAAGGGCAAGAGGCTGGGAT 61.513 55.000 0.00 0.00 44.01 3.85
1077 2094 2.123982 GGGCAAGAGGCTGGGATG 60.124 66.667 0.00 0.00 44.01 3.51
1078 2095 2.123982 GGCAAGAGGCTGGGATGG 60.124 66.667 0.00 0.00 44.01 3.51
1079 2096 2.679716 GCAAGAGGCTGGGATGGT 59.320 61.111 0.00 0.00 40.25 3.55
1080 2097 1.452833 GCAAGAGGCTGGGATGGTC 60.453 63.158 0.00 0.00 40.25 4.02
1081 2098 1.919600 GCAAGAGGCTGGGATGGTCT 61.920 60.000 0.00 0.00 40.25 3.85
1082 2099 0.107312 CAAGAGGCTGGGATGGTCTG 60.107 60.000 0.00 0.00 0.00 3.51
1083 2100 0.252881 AAGAGGCTGGGATGGTCTGA 60.253 55.000 0.00 0.00 0.00 3.27
1084 2101 0.030297 AGAGGCTGGGATGGTCTGAT 60.030 55.000 0.00 0.00 0.00 2.90
1085 2102 0.108207 GAGGCTGGGATGGTCTGATG 59.892 60.000 0.00 0.00 0.00 3.07
1086 2103 0.622738 AGGCTGGGATGGTCTGATGT 60.623 55.000 0.00 0.00 0.00 3.06
1087 2104 0.465097 GGCTGGGATGGTCTGATGTG 60.465 60.000 0.00 0.00 0.00 3.21
1088 2105 0.254178 GCTGGGATGGTCTGATGTGT 59.746 55.000 0.00 0.00 0.00 3.72
1089 2106 1.486310 GCTGGGATGGTCTGATGTGTA 59.514 52.381 0.00 0.00 0.00 2.90
1090 2107 2.484417 GCTGGGATGGTCTGATGTGTAG 60.484 54.545 0.00 0.00 0.00 2.74
1091 2108 2.103771 CTGGGATGGTCTGATGTGTAGG 59.896 54.545 0.00 0.00 0.00 3.18
1092 2109 2.119495 GGGATGGTCTGATGTGTAGGT 58.881 52.381 0.00 0.00 0.00 3.08
1093 2110 2.158900 GGGATGGTCTGATGTGTAGGTG 60.159 54.545 0.00 0.00 0.00 4.00
1094 2111 2.158900 GGATGGTCTGATGTGTAGGTGG 60.159 54.545 0.00 0.00 0.00 4.61
1095 2112 2.319025 TGGTCTGATGTGTAGGTGGA 57.681 50.000 0.00 0.00 0.00 4.02
1096 2113 2.179427 TGGTCTGATGTGTAGGTGGAG 58.821 52.381 0.00 0.00 0.00 3.86
1097 2114 1.482593 GGTCTGATGTGTAGGTGGAGG 59.517 57.143 0.00 0.00 0.00 4.30
1098 2115 2.457598 GTCTGATGTGTAGGTGGAGGA 58.542 52.381 0.00 0.00 0.00 3.71
1099 2116 2.428890 GTCTGATGTGTAGGTGGAGGAG 59.571 54.545 0.00 0.00 0.00 3.69
1100 2117 2.043115 TCTGATGTGTAGGTGGAGGAGT 59.957 50.000 0.00 0.00 0.00 3.85
1101 2118 2.167281 CTGATGTGTAGGTGGAGGAGTG 59.833 54.545 0.00 0.00 0.00 3.51
1102 2119 1.482593 GATGTGTAGGTGGAGGAGTGG 59.517 57.143 0.00 0.00 0.00 4.00
1103 2120 0.485543 TGTGTAGGTGGAGGAGTGGA 59.514 55.000 0.00 0.00 0.00 4.02
1104 2121 1.078823 TGTGTAGGTGGAGGAGTGGAT 59.921 52.381 0.00 0.00 0.00 3.41
1105 2122 1.757699 GTGTAGGTGGAGGAGTGGATC 59.242 57.143 0.00 0.00 0.00 3.36
1169 2186 1.017387 GCGTTGAGCCTTTCATAGGG 58.983 55.000 0.00 0.00 44.91 3.53
1176 2193 1.954927 GCCTTTCATAGGGTTCGAGG 58.045 55.000 0.00 0.00 44.91 4.63
1177 2194 1.475213 GCCTTTCATAGGGTTCGAGGG 60.475 57.143 0.00 0.00 44.91 4.30
1178 2195 1.141053 CCTTTCATAGGGTTCGAGGGG 59.859 57.143 0.00 0.00 40.67 4.79
1179 2196 1.141053 CTTTCATAGGGTTCGAGGGGG 59.859 57.143 0.00 0.00 0.00 5.40
1180 2197 0.340558 TTCATAGGGTTCGAGGGGGA 59.659 55.000 0.00 0.00 0.00 4.81
1181 2198 0.105658 TCATAGGGTTCGAGGGGGAG 60.106 60.000 0.00 0.00 0.00 4.30
1182 2199 0.105658 CATAGGGTTCGAGGGGGAGA 60.106 60.000 0.00 0.00 0.00 3.71
1183 2200 0.640495 ATAGGGTTCGAGGGGGAGAA 59.360 55.000 0.00 0.00 0.00 2.87
1184 2201 0.414629 TAGGGTTCGAGGGGGAGAAA 59.585 55.000 0.00 0.00 0.00 2.52
1185 2202 0.253207 AGGGTTCGAGGGGGAGAAAT 60.253 55.000 0.00 0.00 0.00 2.17
1186 2203 0.107165 GGGTTCGAGGGGGAGAAATG 60.107 60.000 0.00 0.00 0.00 2.32
1187 2204 0.618981 GGTTCGAGGGGGAGAAATGT 59.381 55.000 0.00 0.00 0.00 2.71
1188 2205 1.407025 GGTTCGAGGGGGAGAAATGTC 60.407 57.143 0.00 0.00 0.00 3.06
1189 2206 0.535335 TTCGAGGGGGAGAAATGTCG 59.465 55.000 0.00 0.00 0.00 4.35
1190 2207 0.323999 TCGAGGGGGAGAAATGTCGA 60.324 55.000 0.00 0.00 34.26 4.20
1191 2208 0.103208 CGAGGGGGAGAAATGTCGAG 59.897 60.000 0.00 0.00 0.00 4.04
1192 2209 0.466124 GAGGGGGAGAAATGTCGAGG 59.534 60.000 0.00 0.00 0.00 4.63
1193 2210 0.983378 AGGGGGAGAAATGTCGAGGG 60.983 60.000 0.00 0.00 0.00 4.30
1194 2211 0.981277 GGGGGAGAAATGTCGAGGGA 60.981 60.000 0.00 0.00 0.00 4.20
1195 2212 0.466124 GGGGAGAAATGTCGAGGGAG 59.534 60.000 0.00 0.00 0.00 4.30
1196 2213 1.486211 GGGAGAAATGTCGAGGGAGA 58.514 55.000 0.00 0.00 0.00 3.71
1197 2214 1.410882 GGGAGAAATGTCGAGGGAGAG 59.589 57.143 0.00 0.00 0.00 3.20
1198 2215 1.410882 GGAGAAATGTCGAGGGAGAGG 59.589 57.143 0.00 0.00 0.00 3.69
1199 2216 1.410882 GAGAAATGTCGAGGGAGAGGG 59.589 57.143 0.00 0.00 0.00 4.30
1200 2217 0.179070 GAAATGTCGAGGGAGAGGGC 60.179 60.000 0.00 0.00 0.00 5.19
1201 2218 0.909610 AAATGTCGAGGGAGAGGGCA 60.910 55.000 0.00 0.00 0.00 5.36
1202 2219 1.333636 AATGTCGAGGGAGAGGGCAG 61.334 60.000 0.00 0.00 0.00 4.85
1203 2220 3.844090 GTCGAGGGAGAGGGCAGC 61.844 72.222 0.00 0.00 0.00 5.25
1204 2221 4.067512 TCGAGGGAGAGGGCAGCT 62.068 66.667 0.00 0.00 0.00 4.24
1205 2222 3.847602 CGAGGGAGAGGGCAGCTG 61.848 72.222 10.11 10.11 0.00 4.24
1206 2223 2.364842 GAGGGAGAGGGCAGCTGA 60.365 66.667 20.43 0.00 0.00 4.26
1207 2224 1.765657 GAGGGAGAGGGCAGCTGAT 60.766 63.158 20.43 1.27 0.00 2.90
1208 2225 1.307691 AGGGAGAGGGCAGCTGATT 60.308 57.895 20.43 0.50 0.00 2.57
1209 2226 1.148048 GGGAGAGGGCAGCTGATTC 59.852 63.158 20.43 11.05 0.00 2.52
1210 2227 1.630126 GGGAGAGGGCAGCTGATTCA 61.630 60.000 20.43 0.00 0.00 2.57
1211 2228 0.179051 GGAGAGGGCAGCTGATTCAG 60.179 60.000 20.43 9.40 34.12 3.02
1212 2229 0.179051 GAGAGGGCAGCTGATTCAGG 60.179 60.000 20.43 1.00 31.21 3.86
1213 2230 0.619832 AGAGGGCAGCTGATTCAGGA 60.620 55.000 20.43 0.00 31.21 3.86
1214 2231 0.179051 GAGGGCAGCTGATTCAGGAG 60.179 60.000 20.43 0.00 31.21 3.69
1215 2232 0.619832 AGGGCAGCTGATTCAGGAGA 60.620 55.000 20.43 0.00 31.21 3.71
1216 2233 0.179051 GGGCAGCTGATTCAGGAGAG 60.179 60.000 20.43 0.00 31.21 3.20
1217 2234 0.829333 GGCAGCTGATTCAGGAGAGA 59.171 55.000 20.43 0.00 31.21 3.10
1218 2235 1.417145 GGCAGCTGATTCAGGAGAGAT 59.583 52.381 20.43 0.00 31.21 2.75
1219 2236 2.485903 GCAGCTGATTCAGGAGAGATG 58.514 52.381 20.43 0.13 31.21 2.90
1220 2237 2.158928 GCAGCTGATTCAGGAGAGATGT 60.159 50.000 20.43 0.00 31.21 3.06
1221 2238 3.459145 CAGCTGATTCAGGAGAGATGTG 58.541 50.000 8.42 0.00 31.21 3.21
1222 2239 2.435069 AGCTGATTCAGGAGAGATGTGG 59.565 50.000 15.28 0.00 31.21 4.17
1223 2240 2.485124 GCTGATTCAGGAGAGATGTGGG 60.485 54.545 15.28 0.00 31.21 4.61
1224 2241 2.104451 CTGATTCAGGAGAGATGTGGGG 59.896 54.545 5.73 0.00 0.00 4.96
1225 2242 2.122768 GATTCAGGAGAGATGTGGGGT 58.877 52.381 0.00 0.00 0.00 4.95
1226 2243 2.940514 TTCAGGAGAGATGTGGGGTA 57.059 50.000 0.00 0.00 0.00 3.69
1227 2244 2.160721 TCAGGAGAGATGTGGGGTAC 57.839 55.000 0.00 0.00 0.00 3.34
1239 2256 3.306379 GGGTACCGGTTCTGGAGG 58.694 66.667 15.04 0.00 40.86 4.30
1240 2257 1.305549 GGGTACCGGTTCTGGAGGA 60.306 63.158 15.04 0.00 40.86 3.71
1241 2258 1.611474 GGGTACCGGTTCTGGAGGAC 61.611 65.000 15.04 0.81 40.86 3.85
1242 2259 0.614134 GGTACCGGTTCTGGAGGACT 60.614 60.000 15.04 0.00 0.00 3.85
1243 2260 1.264295 GTACCGGTTCTGGAGGACTT 58.736 55.000 15.04 0.00 0.00 3.01
1244 2261 1.067071 GTACCGGTTCTGGAGGACTTG 60.067 57.143 15.04 0.00 0.00 3.16
1245 2262 1.296715 CCGGTTCTGGAGGACTTGG 59.703 63.158 0.00 0.00 0.00 3.61
1246 2263 1.481056 CCGGTTCTGGAGGACTTGGT 61.481 60.000 0.00 0.00 0.00 3.67
1247 2264 0.037232 CGGTTCTGGAGGACTTGGTC 60.037 60.000 0.00 0.00 0.00 4.02
1257 2274 2.914379 GACTTGGTCCTTGGACGTG 58.086 57.895 12.97 8.29 0.00 4.49
1258 2275 0.106149 GACTTGGTCCTTGGACGTGT 59.894 55.000 12.97 10.99 0.00 4.49
1259 2276 0.106149 ACTTGGTCCTTGGACGTGTC 59.894 55.000 12.97 1.01 0.00 3.67
1260 2277 0.105964 CTTGGTCCTTGGACGTGTCA 59.894 55.000 12.97 3.49 0.00 3.58
1261 2278 0.762418 TTGGTCCTTGGACGTGTCAT 59.238 50.000 12.97 0.00 0.00 3.06
1262 2279 0.762418 TGGTCCTTGGACGTGTCATT 59.238 50.000 12.97 0.00 0.00 2.57
1263 2280 1.142060 TGGTCCTTGGACGTGTCATTT 59.858 47.619 12.97 0.00 0.00 2.32
1264 2281 2.227194 GGTCCTTGGACGTGTCATTTT 58.773 47.619 12.97 0.00 0.00 1.82
1265 2282 2.225727 GGTCCTTGGACGTGTCATTTTC 59.774 50.000 12.97 0.00 0.00 2.29
1266 2283 2.225727 GTCCTTGGACGTGTCATTTTCC 59.774 50.000 3.87 0.00 0.00 3.13
1267 2284 2.105821 TCCTTGGACGTGTCATTTTCCT 59.894 45.455 0.00 0.00 0.00 3.36
1268 2285 3.325425 TCCTTGGACGTGTCATTTTCCTA 59.675 43.478 0.00 0.00 0.00 2.94
1269 2286 3.684788 CCTTGGACGTGTCATTTTCCTAG 59.315 47.826 0.00 0.00 32.61 3.02
1270 2287 3.328382 TGGACGTGTCATTTTCCTAGG 57.672 47.619 0.82 0.82 0.00 3.02
1271 2288 2.635915 TGGACGTGTCATTTTCCTAGGT 59.364 45.455 9.08 0.00 0.00 3.08
1272 2289 3.000727 GGACGTGTCATTTTCCTAGGTG 58.999 50.000 9.08 0.00 0.00 4.00
1273 2290 3.000727 GACGTGTCATTTTCCTAGGTGG 58.999 50.000 9.08 0.00 37.10 4.61
1274 2291 2.370849 ACGTGTCATTTTCCTAGGTGGT 59.629 45.455 9.08 0.00 37.07 4.16
1275 2292 2.742053 CGTGTCATTTTCCTAGGTGGTG 59.258 50.000 9.08 4.43 37.07 4.17
1276 2293 3.081804 GTGTCATTTTCCTAGGTGGTGG 58.918 50.000 9.08 0.00 37.07 4.61
1277 2294 2.092323 GTCATTTTCCTAGGTGGTGGC 58.908 52.381 9.08 2.04 37.07 5.01
1278 2295 1.707989 TCATTTTCCTAGGTGGTGGCA 59.292 47.619 9.08 0.00 37.07 4.92
1279 2296 2.109128 TCATTTTCCTAGGTGGTGGCAA 59.891 45.455 9.08 0.00 37.07 4.52
1280 2297 2.757894 TTTTCCTAGGTGGTGGCAAA 57.242 45.000 9.08 0.00 37.07 3.68
1281 2298 2.757894 TTTCCTAGGTGGTGGCAAAA 57.242 45.000 9.08 0.00 37.07 2.44
1282 2299 2.990740 TTCCTAGGTGGTGGCAAAAT 57.009 45.000 9.08 0.00 37.07 1.82
1283 2300 2.214376 TCCTAGGTGGTGGCAAAATG 57.786 50.000 9.08 0.00 37.07 2.32
1284 2301 1.185315 CCTAGGTGGTGGCAAAATGG 58.815 55.000 0.00 0.00 0.00 3.16
1285 2302 0.532115 CTAGGTGGTGGCAAAATGGC 59.468 55.000 0.00 0.00 44.03 4.40
1295 2312 2.456010 GGCAAAATGGCCGTAAATACG 58.544 47.619 0.00 6.01 45.40 3.06
1306 2323 3.817148 CGTAAATACGTGCAACCCTTT 57.183 42.857 0.00 0.00 44.13 3.11
1307 2324 3.739494 CGTAAATACGTGCAACCCTTTC 58.261 45.455 0.00 0.00 44.13 2.62
1308 2325 3.425227 CGTAAATACGTGCAACCCTTTCC 60.425 47.826 0.00 0.00 44.13 3.13
1309 2326 2.579410 AATACGTGCAACCCTTTCCT 57.421 45.000 0.00 0.00 0.00 3.36
1310 2327 2.579410 ATACGTGCAACCCTTTCCTT 57.421 45.000 0.00 0.00 0.00 3.36
1311 2328 2.351706 TACGTGCAACCCTTTCCTTT 57.648 45.000 0.00 0.00 0.00 3.11
1312 2329 1.480789 ACGTGCAACCCTTTCCTTTT 58.519 45.000 0.00 0.00 0.00 2.27
1313 2330 1.136110 ACGTGCAACCCTTTCCTTTTG 59.864 47.619 0.00 0.00 0.00 2.44
1314 2331 1.136110 CGTGCAACCCTTTCCTTTTGT 59.864 47.619 0.00 0.00 0.00 2.83
1315 2332 2.418060 CGTGCAACCCTTTCCTTTTGTT 60.418 45.455 0.00 0.00 0.00 2.83
1316 2333 3.605634 GTGCAACCCTTTCCTTTTGTTT 58.394 40.909 0.00 0.00 0.00 2.83
1317 2334 4.006989 GTGCAACCCTTTCCTTTTGTTTT 58.993 39.130 0.00 0.00 0.00 2.43
1318 2335 4.094294 GTGCAACCCTTTCCTTTTGTTTTC 59.906 41.667 0.00 0.00 0.00 2.29
1319 2336 3.308595 GCAACCCTTTCCTTTTGTTTTCG 59.691 43.478 0.00 0.00 0.00 3.46
1320 2337 4.500127 CAACCCTTTCCTTTTGTTTTCGT 58.500 39.130 0.00 0.00 0.00 3.85
1321 2338 4.118093 ACCCTTTCCTTTTGTTTTCGTG 57.882 40.909 0.00 0.00 0.00 4.35
1322 2339 3.118920 ACCCTTTCCTTTTGTTTTCGTGG 60.119 43.478 0.00 0.00 0.00 4.94
1323 2340 3.131400 CCCTTTCCTTTTGTTTTCGTGGA 59.869 43.478 0.00 0.00 0.00 4.02
1324 2341 4.359706 CCTTTCCTTTTGTTTTCGTGGAG 58.640 43.478 0.00 0.00 0.00 3.86
1325 2342 3.430333 TTCCTTTTGTTTTCGTGGAGC 57.570 42.857 0.00 0.00 0.00 4.70
1326 2343 1.679153 TCCTTTTGTTTTCGTGGAGCC 59.321 47.619 0.00 0.00 0.00 4.70
1327 2344 1.269569 CCTTTTGTTTTCGTGGAGCCC 60.270 52.381 0.00 0.00 0.00 5.19
1328 2345 0.382515 TTTTGTTTTCGTGGAGCCCG 59.617 50.000 0.00 0.00 0.00 6.13
1329 2346 1.448922 TTTGTTTTCGTGGAGCCCGG 61.449 55.000 0.00 0.00 0.00 5.73
1330 2347 2.281276 GTTTTCGTGGAGCCCGGT 60.281 61.111 0.00 0.00 0.00 5.28
1331 2348 1.895231 GTTTTCGTGGAGCCCGGTT 60.895 57.895 0.00 0.00 0.00 4.44
1332 2349 1.598685 TTTTCGTGGAGCCCGGTTC 60.599 57.895 0.00 0.00 0.00 3.62
1333 2350 2.047213 TTTTCGTGGAGCCCGGTTCT 62.047 55.000 0.00 0.00 0.00 3.01
1334 2351 2.047213 TTTCGTGGAGCCCGGTTCTT 62.047 55.000 0.00 0.00 0.00 2.52
1335 2352 2.434359 CGTGGAGCCCGGTTCTTC 60.434 66.667 0.00 0.00 0.00 2.87
1336 2353 2.434359 GTGGAGCCCGGTTCTTCG 60.434 66.667 0.00 0.00 0.00 3.79
1343 2360 3.488090 CCGGTTCTTCGGCTTCGC 61.488 66.667 0.00 0.00 43.71 4.70
1344 2361 3.488090 CGGTTCTTCGGCTTCGCC 61.488 66.667 0.00 0.00 46.75 5.54
1353 2370 3.936653 GGCTTCGCCTTTTTGCAC 58.063 55.556 0.00 0.00 46.69 4.57
1354 2371 1.363807 GGCTTCGCCTTTTTGCACT 59.636 52.632 0.00 0.00 46.69 4.40
1355 2372 0.596082 GGCTTCGCCTTTTTGCACTA 59.404 50.000 0.00 0.00 46.69 2.74
1356 2373 1.666023 GGCTTCGCCTTTTTGCACTAC 60.666 52.381 0.00 0.00 46.69 2.73
1357 2374 1.001815 GCTTCGCCTTTTTGCACTACA 60.002 47.619 0.00 0.00 0.00 2.74
1358 2375 2.918131 GCTTCGCCTTTTTGCACTACAG 60.918 50.000 0.00 0.00 0.00 2.74
1359 2376 0.591170 TCGCCTTTTTGCACTACAGC 59.409 50.000 0.00 0.00 0.00 4.40
1360 2377 0.387239 CGCCTTTTTGCACTACAGCC 60.387 55.000 0.00 0.00 0.00 4.85
1361 2378 0.038251 GCCTTTTTGCACTACAGCCC 60.038 55.000 0.00 0.00 0.00 5.19
1362 2379 1.327303 CCTTTTTGCACTACAGCCCA 58.673 50.000 0.00 0.00 0.00 5.36
1363 2380 1.270550 CCTTTTTGCACTACAGCCCAG 59.729 52.381 0.00 0.00 0.00 4.45
1364 2381 0.673437 TTTTTGCACTACAGCCCAGC 59.327 50.000 0.00 0.00 0.00 4.85
1365 2382 0.178992 TTTTGCACTACAGCCCAGCT 60.179 50.000 0.00 0.00 40.77 4.24
1366 2383 0.690192 TTTGCACTACAGCCCAGCTA 59.310 50.000 0.00 0.00 36.40 3.32
1367 2384 0.690192 TTGCACTACAGCCCAGCTAA 59.310 50.000 0.00 0.00 36.40 3.09
1368 2385 0.250234 TGCACTACAGCCCAGCTAAG 59.750 55.000 0.00 0.00 36.40 2.18
1369 2386 1.092345 GCACTACAGCCCAGCTAAGC 61.092 60.000 0.00 0.00 36.40 3.09
1370 2387 0.539051 CACTACAGCCCAGCTAAGCT 59.461 55.000 3.87 3.87 36.40 3.74
1382 2399 2.910199 AGCTAAGCTGCATGAATTCGA 58.090 42.857 1.02 0.00 37.57 3.71
1383 2400 2.611292 AGCTAAGCTGCATGAATTCGAC 59.389 45.455 1.02 0.00 37.57 4.20
1384 2401 2.611292 GCTAAGCTGCATGAATTCGACT 59.389 45.455 1.02 0.00 0.00 4.18
1385 2402 3.064545 GCTAAGCTGCATGAATTCGACTT 59.935 43.478 1.02 0.00 0.00 3.01
1386 2403 3.482722 AAGCTGCATGAATTCGACTTG 57.517 42.857 1.02 0.00 0.00 3.16
1387 2404 2.430465 AGCTGCATGAATTCGACTTGT 58.570 42.857 1.02 0.00 0.00 3.16
1388 2405 2.161012 AGCTGCATGAATTCGACTTGTG 59.839 45.455 1.02 0.00 0.00 3.33
1389 2406 2.730090 GCTGCATGAATTCGACTTGTGG 60.730 50.000 0.00 0.00 0.00 4.17
1390 2407 2.743664 CTGCATGAATTCGACTTGTGGA 59.256 45.455 0.00 0.00 0.00 4.02
1391 2408 2.743664 TGCATGAATTCGACTTGTGGAG 59.256 45.455 0.00 0.00 0.00 3.86
1392 2409 2.476854 GCATGAATTCGACTTGTGGAGC 60.477 50.000 0.00 0.00 0.00 4.70
1393 2410 2.839486 TGAATTCGACTTGTGGAGCT 57.161 45.000 0.04 0.00 0.00 4.09
1394 2411 2.688507 TGAATTCGACTTGTGGAGCTC 58.311 47.619 4.71 4.71 0.00 4.09
1395 2412 2.037121 TGAATTCGACTTGTGGAGCTCA 59.963 45.455 17.19 0.00 0.00 4.26
1396 2413 2.376808 ATTCGACTTGTGGAGCTCAG 57.623 50.000 17.19 6.65 0.00 3.35
1397 2414 1.328279 TTCGACTTGTGGAGCTCAGA 58.672 50.000 17.19 0.00 0.00 3.27
1398 2415 0.598562 TCGACTTGTGGAGCTCAGAC 59.401 55.000 17.19 11.92 0.00 3.51
1399 2416 0.730834 CGACTTGTGGAGCTCAGACG 60.731 60.000 17.19 12.16 0.00 4.18
1400 2417 0.315568 GACTTGTGGAGCTCAGACGT 59.684 55.000 17.19 5.35 0.00 4.34
1401 2418 0.753262 ACTTGTGGAGCTCAGACGTT 59.247 50.000 17.19 0.00 0.00 3.99
1402 2419 1.269831 ACTTGTGGAGCTCAGACGTTC 60.270 52.381 17.19 0.00 0.00 3.95
1403 2420 0.318699 TTGTGGAGCTCAGACGTTCG 60.319 55.000 17.19 0.00 0.00 3.95
1404 2421 1.444553 GTGGAGCTCAGACGTTCGG 60.445 63.158 17.19 0.00 0.00 4.30
1405 2422 2.182030 GGAGCTCAGACGTTCGGG 59.818 66.667 17.19 0.00 0.00 5.14
1406 2423 2.507324 GAGCTCAGACGTTCGGGC 60.507 66.667 9.40 1.96 0.00 6.13
1407 2424 4.421479 AGCTCAGACGTTCGGGCG 62.421 66.667 4.57 0.00 37.94 6.13
1414 2431 3.672293 ACGTTCGGGCGTCTAAGA 58.328 55.556 0.00 0.00 41.71 2.10
1415 2432 1.505353 ACGTTCGGGCGTCTAAGAG 59.495 57.895 0.00 0.00 41.71 2.85
1416 2433 1.872679 CGTTCGGGCGTCTAAGAGC 60.873 63.158 0.00 0.00 0.00 4.09
1417 2434 1.511768 GTTCGGGCGTCTAAGAGCT 59.488 57.895 0.00 0.00 0.00 4.09
1418 2435 0.108756 GTTCGGGCGTCTAAGAGCTT 60.109 55.000 0.00 0.00 0.00 3.74
1419 2436 1.133790 GTTCGGGCGTCTAAGAGCTTA 59.866 52.381 0.00 0.00 0.00 3.09
1421 2438 1.022735 CGGGCGTCTAAGAGCTTAGA 58.977 55.000 14.29 14.29 46.51 2.10
1435 2452 3.511477 AGCTTAGACACTCCTTCTTCCA 58.489 45.455 0.00 0.00 0.00 3.53
1449 2466 3.949842 TCTTCCATCTCTCACACACAG 57.050 47.619 0.00 0.00 0.00 3.66
1461 2836 4.639755 TCTCACACACAGAAATTTGCTTCA 59.360 37.500 0.00 0.00 0.00 3.02
1464 2839 5.045215 CACACACAGAAATTTGCTTCATGT 58.955 37.500 0.00 0.00 30.95 3.21
1465 2840 5.045215 ACACACAGAAATTTGCTTCATGTG 58.955 37.500 14.22 14.22 43.46 3.21
1466 2841 5.045215 CACACAGAAATTTGCTTCATGTGT 58.955 37.500 0.00 4.52 42.19 3.72
1467 2842 5.521010 CACACAGAAATTTGCTTCATGTGTT 59.479 36.000 5.39 0.00 41.02 3.32
1468 2843 6.696583 CACACAGAAATTTGCTTCATGTGTTA 59.303 34.615 5.39 0.00 41.02 2.41
1720 3098 4.537433 GATGCGGCTTCCTCGGCT 62.537 66.667 0.00 0.00 34.01 5.52
1773 3151 1.149174 CCACCAGTGGCAAGTGACT 59.851 57.895 9.78 0.00 44.73 3.41
1806 3184 2.525629 TCCGTGCTGGAGGTCCAA 60.526 61.111 0.00 0.00 46.97 3.53
2230 3633 6.726764 ACCTTGGGCTCCTTATTATCTACTAG 59.273 42.308 0.00 0.00 0.00 2.57
2236 3639 5.648960 GCTCCTTATTATCTACTAGTCGCCT 59.351 44.000 0.00 0.00 0.00 5.52
2238 3641 7.336427 GCTCCTTATTATCTACTAGTCGCCTTA 59.664 40.741 0.00 0.00 0.00 2.69
2239 3642 9.228949 CTCCTTATTATCTACTAGTCGCCTTAA 57.771 37.037 0.00 0.00 0.00 1.85
2252 3655 3.309954 GTCGCCTTAATTAAGCTGGAGTG 59.690 47.826 18.18 11.36 32.02 3.51
2299 3707 2.552599 TGGCGATTTGGTAGTGAACA 57.447 45.000 0.00 0.00 0.00 3.18
2352 3822 4.262592 GGTTGGGCTTTGATTGATTCTGTT 60.263 41.667 0.00 0.00 0.00 3.16
2379 3849 3.250762 GCAATGTTGGCTAATCTATCGCA 59.749 43.478 0.00 0.00 0.00 5.10
2383 3853 5.468540 TGTTGGCTAATCTATCGCATACT 57.531 39.130 0.00 0.00 0.00 2.12
2384 3854 5.853936 TGTTGGCTAATCTATCGCATACTT 58.146 37.500 0.00 0.00 0.00 2.24
2385 3855 5.696270 TGTTGGCTAATCTATCGCATACTTG 59.304 40.000 0.00 0.00 0.00 3.16
2386 3856 4.820897 TGGCTAATCTATCGCATACTTGG 58.179 43.478 0.00 0.00 0.00 3.61
2388 3858 4.865365 GGCTAATCTATCGCATACTTGGTC 59.135 45.833 0.00 0.00 0.00 4.02
2389 3859 4.559251 GCTAATCTATCGCATACTTGGTCG 59.441 45.833 0.00 0.00 0.00 4.79
2399 3869 2.526304 TACTTGGTCGATATGCAGCC 57.474 50.000 0.00 0.00 0.00 4.85
2412 3882 0.391130 TGCAGCCGATCACTGGTAAC 60.391 55.000 13.13 0.00 35.62 2.50
2414 3884 1.136305 GCAGCCGATCACTGGTAACTA 59.864 52.381 13.13 0.00 35.62 2.24
2415 3885 2.224066 GCAGCCGATCACTGGTAACTAT 60.224 50.000 13.13 0.00 35.62 2.12
2417 3887 3.804325 CAGCCGATCACTGGTAACTATTG 59.196 47.826 5.07 0.00 37.61 1.90
2454 3928 0.314578 GTTCATGTCGATCGCTTGCG 60.315 55.000 11.09 8.87 0.00 4.85
2459 3933 1.218875 TGTCGATCGCTTGCGTGTTT 61.219 50.000 11.09 0.00 0.00 2.83
2460 3934 0.785708 GTCGATCGCTTGCGTGTTTG 60.786 55.000 11.09 5.77 0.00 2.93
2513 3987 4.092821 TCTTGCGAGGATAAACAAATGTCG 59.907 41.667 0.00 0.00 0.00 4.35
2538 4013 6.583806 GCTTTGTAGGATCTTGATTGTTTGTG 59.416 38.462 0.00 0.00 0.00 3.33
2539 4014 7.581213 TTTGTAGGATCTTGATTGTTTGTGT 57.419 32.000 0.00 0.00 0.00 3.72
2540 4015 6.801539 TGTAGGATCTTGATTGTTTGTGTC 57.198 37.500 0.00 0.00 0.00 3.67
2541 4016 6.295249 TGTAGGATCTTGATTGTTTGTGTCA 58.705 36.000 0.00 0.00 0.00 3.58
2542 4017 6.770303 TGTAGGATCTTGATTGTTTGTGTCAA 59.230 34.615 0.00 0.00 0.00 3.18
2547 4022 7.095940 GGATCTTGATTGTTTGTGTCAATTGTG 60.096 37.037 5.13 0.00 35.94 3.33
2548 4023 5.519566 TCTTGATTGTTTGTGTCAATTGTGC 59.480 36.000 5.13 0.74 35.94 4.57
2550 4025 1.554392 TGTTTGTGTCAATTGTGCGC 58.446 45.000 0.00 0.00 0.00 6.09
2599 4082 1.537562 CCGTCGTAGGGAAATGGTAGC 60.538 57.143 0.00 0.00 0.00 3.58
2600 4083 1.135527 CGTCGTAGGGAAATGGTAGCA 59.864 52.381 0.00 0.00 0.00 3.49
2601 4084 2.798499 CGTCGTAGGGAAATGGTAGCAG 60.798 54.545 0.00 0.00 0.00 4.24
2702 4239 3.846586 TATTAGGCTTGCTCGGCTGCC 62.847 57.143 9.11 9.11 44.24 4.85
2716 4256 1.234615 GCTGCCGGTGTTCTTGCTAA 61.235 55.000 1.90 0.00 0.00 3.09
2717 4257 1.234821 CTGCCGGTGTTCTTGCTAAA 58.765 50.000 1.90 0.00 0.00 1.85
2718 4258 1.812571 CTGCCGGTGTTCTTGCTAAAT 59.187 47.619 1.90 0.00 0.00 1.40
2762 4331 5.633830 AACTGTCGAATCTGAAAATGCAT 57.366 34.783 0.00 0.00 0.00 3.96
2766 4335 4.696877 TGTCGAATCTGAAAATGCATGAGT 59.303 37.500 0.00 0.00 0.00 3.41
2767 4336 5.181811 TGTCGAATCTGAAAATGCATGAGTT 59.818 36.000 0.00 0.00 0.00 3.01
2768 4337 6.371271 TGTCGAATCTGAAAATGCATGAGTTA 59.629 34.615 0.00 0.00 0.00 2.24
2769 4338 7.066163 TGTCGAATCTGAAAATGCATGAGTTAT 59.934 33.333 0.00 0.00 0.00 1.89
2770 4339 7.375280 GTCGAATCTGAAAATGCATGAGTTATG 59.625 37.037 0.00 0.00 39.88 1.90
2771 4340 7.280652 TCGAATCTGAAAATGCATGAGTTATGA 59.719 33.333 0.00 0.00 39.21 2.15
2772 4341 7.375280 CGAATCTGAAAATGCATGAGTTATGAC 59.625 37.037 0.00 0.00 39.21 3.06
2833 4742 9.657121 GGAATGCTAATTTTCTTATTCTCTTCG 57.343 33.333 0.00 0.00 0.00 3.79
2867 4777 2.796593 GCATGTTTTGTGTTCTCCTTGC 59.203 45.455 0.00 0.00 0.00 4.01
2999 4945 2.032981 CTGAAACTTGCCTGCCGTT 58.967 52.632 0.00 0.00 0.00 4.44
3000 4946 0.385390 CTGAAACTTGCCTGCCGTTT 59.615 50.000 6.41 6.41 33.91 3.60
3008 4954 1.172180 TGCCTGCCGTTTTTCTCTGG 61.172 55.000 0.00 0.00 0.00 3.86
3018 4977 5.642491 GCCGTTTTTCTCTGGAACTAGTATT 59.358 40.000 0.00 0.00 0.00 1.89
3024 4983 9.798994 TTTTTCTCTGGAACTAGTATTCGATAC 57.201 33.333 0.00 0.00 35.99 2.24
3029 4988 9.491675 CTCTGGAACTAGTATTCGATACTCTAA 57.508 37.037 0.00 0.00 44.55 2.10
3110 5078 5.774690 TCCATTTTACTTTTCTGGATGCTGT 59.225 36.000 0.00 0.00 31.19 4.40
3119 5087 3.213206 TCTGGATGCTGTTGTTCTTGT 57.787 42.857 0.00 0.00 0.00 3.16
3120 5088 2.880268 TCTGGATGCTGTTGTTCTTGTG 59.120 45.455 0.00 0.00 0.00 3.33
3121 5089 2.620115 CTGGATGCTGTTGTTCTTGTGT 59.380 45.455 0.00 0.00 0.00 3.72
3122 5090 2.358582 TGGATGCTGTTGTTCTTGTGTG 59.641 45.455 0.00 0.00 0.00 3.82
3123 5091 2.358898 GGATGCTGTTGTTCTTGTGTGT 59.641 45.455 0.00 0.00 0.00 3.72
3124 5092 2.917701 TGCTGTTGTTCTTGTGTGTG 57.082 45.000 0.00 0.00 0.00 3.82
3125 5093 1.135431 TGCTGTTGTTCTTGTGTGTGC 60.135 47.619 0.00 0.00 0.00 4.57
3127 5095 0.179176 TGTTGTTCTTGTGTGTGCGC 60.179 50.000 0.00 0.00 0.00 6.09
3128 5096 0.098728 GTTGTTCTTGTGTGTGCGCT 59.901 50.000 9.73 0.00 0.00 5.92
3129 5097 0.376852 TTGTTCTTGTGTGTGCGCTC 59.623 50.000 9.73 5.51 0.00 5.03
3131 5099 1.520564 TTCTTGTGTGTGCGCTCGT 60.521 52.632 9.73 0.00 0.00 4.18
3132 5100 1.761244 TTCTTGTGTGTGCGCTCGTG 61.761 55.000 9.73 0.00 0.00 4.35
3133 5101 3.227372 CTTGTGTGTGCGCTCGTGG 62.227 63.158 9.73 0.00 0.00 4.94
3137 5105 3.726517 GTGTGCGCTCGTGGCAAT 61.727 61.111 9.73 0.00 42.92 3.56
3138 5106 2.047750 TGTGCGCTCGTGGCAATA 60.048 55.556 9.73 0.00 42.92 1.90
3139 5107 2.100031 TGTGCGCTCGTGGCAATAG 61.100 57.895 9.73 0.00 42.92 1.73
3142 5110 0.108567 TGCGCTCGTGGCAATAGTTA 60.109 50.000 9.73 0.00 41.91 2.24
3143 5111 0.577269 GCGCTCGTGGCAATAGTTAG 59.423 55.000 0.00 0.00 41.91 2.34
3144 5112 1.209128 CGCTCGTGGCAATAGTTAGG 58.791 55.000 0.00 0.00 41.91 2.69
3162 5130 4.088421 CCGTTAGGCAGTAGCGTG 57.912 61.111 0.00 0.00 43.41 5.34
3164 5132 1.076533 CCGTTAGGCAGTAGCGTGTG 61.077 60.000 0.00 0.00 43.41 3.82
3165 5133 1.683790 CGTTAGGCAGTAGCGTGTGC 61.684 60.000 0.00 0.00 43.41 4.57
3184 5152 4.896028 CGCGCTCGCTCGATCTGT 62.896 66.667 5.56 0.00 39.32 3.41
3185 5153 2.580867 GCGCTCGCTCGATCTGTT 60.581 61.111 0.00 0.00 38.26 3.16
3186 5154 2.854214 GCGCTCGCTCGATCTGTTG 61.854 63.158 0.00 0.00 38.26 3.33
3188 5156 1.880340 GCTCGCTCGATCTGTTGGG 60.880 63.158 0.00 0.00 0.00 4.12
3189 5157 1.513158 CTCGCTCGATCTGTTGGGT 59.487 57.895 0.00 0.00 0.00 4.51
3190 5158 0.526524 CTCGCTCGATCTGTTGGGTC 60.527 60.000 0.00 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.843334 GGATATTAGAGTAGTCGAATTTGTAGG 57.157 37.037 10.67 0.00 31.24 3.18
7 8 9.765795 CCAAAGGATATTAGAGTAGTCGAATTT 57.234 33.333 10.67 4.05 31.24 1.82
8 9 8.368668 CCCAAAGGATATTAGAGTAGTCGAATT 58.631 37.037 10.67 0.95 30.50 2.17
9 10 7.509659 ACCCAAAGGATATTAGAGTAGTCGAAT 59.490 37.037 10.31 10.31 36.73 3.34
10 11 6.837568 ACCCAAAGGATATTAGAGTAGTCGAA 59.162 38.462 0.00 0.00 36.73 3.71
11 12 6.371278 ACCCAAAGGATATTAGAGTAGTCGA 58.629 40.000 0.00 0.00 36.73 4.20
12 13 6.651975 ACCCAAAGGATATTAGAGTAGTCG 57.348 41.667 0.00 0.00 36.73 4.18
13 14 9.984190 CTTAACCCAAAGGATATTAGAGTAGTC 57.016 37.037 0.00 0.00 36.73 2.59
14 15 8.430431 GCTTAACCCAAAGGATATTAGAGTAGT 58.570 37.037 0.00 0.00 36.73 2.73
15 16 7.878644 GGCTTAACCCAAAGGATATTAGAGTAG 59.121 40.741 0.00 0.00 36.73 2.57
16 17 7.472381 CGGCTTAACCCAAAGGATATTAGAGTA 60.472 40.741 0.00 0.00 36.73 2.59
17 18 6.602278 GGCTTAACCCAAAGGATATTAGAGT 58.398 40.000 0.00 0.00 36.73 3.24
18 19 5.701290 CGGCTTAACCCAAAGGATATTAGAG 59.299 44.000 0.00 0.00 36.73 2.43
19 20 5.131475 ACGGCTTAACCCAAAGGATATTAGA 59.869 40.000 0.00 0.00 36.73 2.10
20 21 5.374071 ACGGCTTAACCCAAAGGATATTAG 58.626 41.667 0.00 0.00 36.73 1.73
21 22 5.376756 ACGGCTTAACCCAAAGGATATTA 57.623 39.130 0.00 0.00 36.73 0.98
22 23 4.245251 ACGGCTTAACCCAAAGGATATT 57.755 40.909 0.00 0.00 36.73 1.28
23 24 3.945640 ACGGCTTAACCCAAAGGATAT 57.054 42.857 0.00 0.00 36.73 1.63
24 25 3.724732 AACGGCTTAACCCAAAGGATA 57.275 42.857 0.00 0.00 36.73 2.59
25 26 2.597578 AACGGCTTAACCCAAAGGAT 57.402 45.000 0.00 0.00 36.73 3.24
26 27 3.505480 TTAACGGCTTAACCCAAAGGA 57.495 42.857 0.00 0.00 36.73 3.36
27 28 3.570975 ACTTTAACGGCTTAACCCAAAGG 59.429 43.478 0.00 0.00 34.64 3.11
28 29 4.517832 AGACTTTAACGGCTTAACCCAAAG 59.482 41.667 0.00 0.00 35.67 2.77
29 30 4.276431 CAGACTTTAACGGCTTAACCCAAA 59.724 41.667 0.00 0.00 33.26 3.28
175 176 7.545615 GGTGTTTTTCTCTTCTTTCATGTGTTT 59.454 33.333 0.00 0.00 0.00 2.83
253 254 1.154035 CTTGGATTGCCGTTTCCGC 60.154 57.895 0.00 0.00 36.79 5.54
367 368 1.771565 TACCGTCATGGGAACGAGAT 58.228 50.000 6.97 0.00 44.64 2.75
399 400 2.507547 TCGCCGGACCGATTTTCG 60.508 61.111 17.49 10.40 40.07 3.46
472 473 1.398958 GGCTTGGCTTGGTTTGGTGA 61.399 55.000 0.00 0.00 0.00 4.02
473 474 1.069596 GGCTTGGCTTGGTTTGGTG 59.930 57.895 0.00 0.00 0.00 4.17
474 475 0.980231 TTGGCTTGGCTTGGTTTGGT 60.980 50.000 0.00 0.00 0.00 3.67
475 476 0.179936 TTTGGCTTGGCTTGGTTTGG 59.820 50.000 0.00 0.00 0.00 3.28
476 477 1.298602 GTTTGGCTTGGCTTGGTTTG 58.701 50.000 0.00 0.00 0.00 2.93
477 478 0.179086 CGTTTGGCTTGGCTTGGTTT 60.179 50.000 0.00 0.00 0.00 3.27
478 479 1.040339 TCGTTTGGCTTGGCTTGGTT 61.040 50.000 0.00 0.00 0.00 3.67
479 480 1.454847 TCGTTTGGCTTGGCTTGGT 60.455 52.632 0.00 0.00 0.00 3.67
480 481 1.007387 GTCGTTTGGCTTGGCTTGG 60.007 57.895 0.00 0.00 0.00 3.61
481 482 1.370414 CGTCGTTTGGCTTGGCTTG 60.370 57.895 0.00 0.00 0.00 4.01
482 483 3.030652 CGTCGTTTGGCTTGGCTT 58.969 55.556 0.00 0.00 0.00 4.35
483 484 3.660111 GCGTCGTTTGGCTTGGCT 61.660 61.111 0.00 0.00 0.00 4.75
484 485 4.700365 GGCGTCGTTTGGCTTGGC 62.700 66.667 0.00 0.00 0.00 4.52
485 486 4.038080 GGGCGTCGTTTGGCTTGG 62.038 66.667 0.00 0.00 0.00 3.61
486 487 4.038080 GGGGCGTCGTTTGGCTTG 62.038 66.667 0.00 0.00 0.00 4.01
487 488 4.572571 TGGGGCGTCGTTTGGCTT 62.573 61.111 0.00 0.00 0.00 4.35
488 489 4.572571 TTGGGGCGTCGTTTGGCT 62.573 61.111 0.00 0.00 0.00 4.75
489 490 4.038080 CTTGGGGCGTCGTTTGGC 62.038 66.667 0.00 0.00 0.00 4.52
490 491 1.301874 TACTTGGGGCGTCGTTTGG 60.302 57.895 0.00 0.00 0.00 3.28
491 492 1.571215 GGTACTTGGGGCGTCGTTTG 61.571 60.000 0.00 0.00 0.00 2.93
492 493 1.301953 GGTACTTGGGGCGTCGTTT 60.302 57.895 0.00 0.00 0.00 3.60
493 494 1.833787 ATGGTACTTGGGGCGTCGTT 61.834 55.000 0.00 0.00 0.00 3.85
494 495 2.288025 ATGGTACTTGGGGCGTCGT 61.288 57.895 0.00 0.00 0.00 4.34
495 496 1.813753 CATGGTACTTGGGGCGTCG 60.814 63.158 0.00 0.00 0.00 5.12
496 497 1.451387 CCATGGTACTTGGGGCGTC 60.451 63.158 2.57 0.00 0.00 5.19
497 498 1.279025 ATCCATGGTACTTGGGGCGT 61.279 55.000 12.58 0.00 34.85 5.68
498 499 0.106719 AATCCATGGTACTTGGGGCG 60.107 55.000 12.58 0.00 34.85 6.13
499 500 2.159179 AAATCCATGGTACTTGGGGC 57.841 50.000 12.58 0.00 34.85 5.80
663 665 2.187946 CACCGACCAGCCATCTCC 59.812 66.667 0.00 0.00 0.00 3.71
671 673 2.280797 CACACCACCACCGACCAG 60.281 66.667 0.00 0.00 0.00 4.00
679 681 3.238497 AGCTACGGCACACCACCA 61.238 61.111 0.00 0.00 41.70 4.17
719 721 1.059584 TATGACACCCCATCGGCCAT 61.060 55.000 2.24 0.00 33.26 4.40
720 722 1.690985 TATGACACCCCATCGGCCA 60.691 57.895 2.24 0.00 33.26 5.36
828 834 3.805108 GCAAGGAGATTCATATGGCTCGT 60.805 47.826 2.13 6.69 0.00 4.18
866 872 0.034756 GCGATTTTTGGTTGCCCCTT 59.965 50.000 0.00 0.00 0.00 3.95
917 1474 0.178998 ATCTCCATGTCATGCAGCCC 60.179 55.000 7.35 0.00 0.00 5.19
922 1479 2.022195 AGCAACATCTCCATGTCATGC 58.978 47.619 7.35 4.33 42.89 4.06
955 1972 0.741221 ATTGACGCCCGAGAAAGCTC 60.741 55.000 0.00 0.00 37.81 4.09
956 1973 1.021390 CATTGACGCCCGAGAAAGCT 61.021 55.000 0.00 0.00 0.00 3.74
957 1974 1.425428 CATTGACGCCCGAGAAAGC 59.575 57.895 0.00 0.00 0.00 3.51
960 1977 1.375396 CACCATTGACGCCCGAGAA 60.375 57.895 0.00 0.00 0.00 2.87
961 1978 1.252215 TACACCATTGACGCCCGAGA 61.252 55.000 0.00 0.00 0.00 4.04
963 1980 1.216977 CTACACCATTGACGCCCGA 59.783 57.895 0.00 0.00 0.00 5.14
964 1981 0.672401 AACTACACCATTGACGCCCG 60.672 55.000 0.00 0.00 0.00 6.13
965 1982 2.093869 TCTAACTACACCATTGACGCCC 60.094 50.000 0.00 0.00 0.00 6.13
966 1983 3.187700 CTCTAACTACACCATTGACGCC 58.812 50.000 0.00 0.00 0.00 5.68
967 1984 2.603560 GCTCTAACTACACCATTGACGC 59.396 50.000 0.00 0.00 0.00 5.19
969 1986 5.120830 CACAAGCTCTAACTACACCATTGAC 59.879 44.000 0.00 0.00 0.00 3.18
970 1987 5.237815 CACAAGCTCTAACTACACCATTGA 58.762 41.667 0.00 0.00 0.00 2.57
971 1988 4.142816 GCACAAGCTCTAACTACACCATTG 60.143 45.833 0.00 0.00 37.91 2.82
972 1989 4.003648 GCACAAGCTCTAACTACACCATT 58.996 43.478 0.00 0.00 37.91 3.16
973 1990 3.007940 TGCACAAGCTCTAACTACACCAT 59.992 43.478 0.00 0.00 42.74 3.55
974 1991 2.367241 TGCACAAGCTCTAACTACACCA 59.633 45.455 0.00 0.00 42.74 4.17
975 1992 3.040147 TGCACAAGCTCTAACTACACC 57.960 47.619 0.00 0.00 42.74 4.16
978 1995 2.029728 CGCATGCACAAGCTCTAACTAC 59.970 50.000 19.57 0.00 42.74 2.73
979 1996 2.094234 TCGCATGCACAAGCTCTAACTA 60.094 45.455 19.57 0.00 42.74 2.24
983 2000 1.292992 CATCGCATGCACAAGCTCTA 58.707 50.000 19.57 0.00 42.74 2.43
985 2002 1.063649 CCATCGCATGCACAAGCTC 59.936 57.895 19.57 0.00 42.74 4.09
987 2004 2.103538 CCCATCGCATGCACAAGC 59.896 61.111 19.57 0.00 42.57 4.01
988 2005 1.597797 AACCCCATCGCATGCACAAG 61.598 55.000 19.57 0.57 0.00 3.16
989 2006 1.606025 AACCCCATCGCATGCACAA 60.606 52.632 19.57 2.32 0.00 3.33
990 2007 2.035469 AACCCCATCGCATGCACA 59.965 55.556 19.57 3.25 0.00 4.57
991 2008 2.491152 CAACCCCATCGCATGCAC 59.509 61.111 19.57 0.00 0.00 4.57
992 2009 3.451004 GCAACCCCATCGCATGCA 61.451 61.111 19.57 5.34 37.00 3.96
993 2010 3.142838 AGCAACCCCATCGCATGC 61.143 61.111 7.91 7.91 37.28 4.06
994 2011 2.802792 CAGCAACCCCATCGCATG 59.197 61.111 0.00 0.00 0.00 4.06
995 2012 3.142838 GCAGCAACCCCATCGCAT 61.143 61.111 0.00 0.00 0.00 4.73
1031 2048 0.523072 CGTCTTGTTGATGCCCAAGG 59.477 55.000 0.00 0.00 38.83 3.61
1032 2049 1.466167 CTCGTCTTGTTGATGCCCAAG 59.534 52.381 0.00 0.00 39.50 3.61
1033 2050 1.071542 TCTCGTCTTGTTGATGCCCAA 59.928 47.619 0.00 0.00 0.00 4.12
1034 2051 0.684535 TCTCGTCTTGTTGATGCCCA 59.315 50.000 0.00 0.00 0.00 5.36
1035 2052 1.079503 GTCTCGTCTTGTTGATGCCC 58.920 55.000 0.00 0.00 0.00 5.36
1036 2053 1.996191 GAGTCTCGTCTTGTTGATGCC 59.004 52.381 0.00 0.00 0.00 4.40
1037 2054 2.677199 TGAGTCTCGTCTTGTTGATGC 58.323 47.619 0.00 0.00 0.00 3.91
1038 2055 4.151335 CCTTTGAGTCTCGTCTTGTTGATG 59.849 45.833 0.00 0.00 0.00 3.07
1039 2056 4.310769 CCTTTGAGTCTCGTCTTGTTGAT 58.689 43.478 0.00 0.00 0.00 2.57
1040 2057 3.492656 CCCTTTGAGTCTCGTCTTGTTGA 60.493 47.826 0.00 0.00 0.00 3.18
1041 2058 2.802816 CCCTTTGAGTCTCGTCTTGTTG 59.197 50.000 0.00 0.00 0.00 3.33
1042 2059 2.807108 GCCCTTTGAGTCTCGTCTTGTT 60.807 50.000 0.00 0.00 0.00 2.83
1043 2060 1.270358 GCCCTTTGAGTCTCGTCTTGT 60.270 52.381 0.00 0.00 0.00 3.16
1044 2061 1.270305 TGCCCTTTGAGTCTCGTCTTG 60.270 52.381 0.00 0.00 0.00 3.02
1045 2062 1.048601 TGCCCTTTGAGTCTCGTCTT 58.951 50.000 0.00 0.00 0.00 3.01
1046 2063 1.001406 CTTGCCCTTTGAGTCTCGTCT 59.999 52.381 0.00 0.00 0.00 4.18
1047 2064 1.000955 TCTTGCCCTTTGAGTCTCGTC 59.999 52.381 0.00 0.00 0.00 4.20
1048 2065 1.001406 CTCTTGCCCTTTGAGTCTCGT 59.999 52.381 0.00 0.00 0.00 4.18
1049 2066 1.674221 CCTCTTGCCCTTTGAGTCTCG 60.674 57.143 0.00 0.00 0.00 4.04
1050 2067 1.948144 GCCTCTTGCCCTTTGAGTCTC 60.948 57.143 0.00 0.00 0.00 3.36
1051 2068 0.037447 GCCTCTTGCCCTTTGAGTCT 59.963 55.000 0.00 0.00 0.00 3.24
1052 2069 0.037447 AGCCTCTTGCCCTTTGAGTC 59.963 55.000 0.00 0.00 42.71 3.36
1053 2070 0.251077 CAGCCTCTTGCCCTTTGAGT 60.251 55.000 0.00 0.00 42.71 3.41
1054 2071 0.964358 CCAGCCTCTTGCCCTTTGAG 60.964 60.000 0.00 0.00 42.71 3.02
1055 2072 1.075482 CCAGCCTCTTGCCCTTTGA 59.925 57.895 0.00 0.00 42.71 2.69
1056 2073 1.980772 CCCAGCCTCTTGCCCTTTG 60.981 63.158 0.00 0.00 42.71 2.77
1057 2074 1.513087 ATCCCAGCCTCTTGCCCTTT 61.513 55.000 0.00 0.00 42.71 3.11
1058 2075 1.932757 ATCCCAGCCTCTTGCCCTT 60.933 57.895 0.00 0.00 42.71 3.95
1059 2076 2.286732 ATCCCAGCCTCTTGCCCT 60.287 61.111 0.00 0.00 42.71 5.19
1060 2077 2.123982 CATCCCAGCCTCTTGCCC 60.124 66.667 0.00 0.00 42.71 5.36
1061 2078 2.123982 CCATCCCAGCCTCTTGCC 60.124 66.667 0.00 0.00 42.71 4.52
1062 2079 1.452833 GACCATCCCAGCCTCTTGC 60.453 63.158 0.00 0.00 41.71 4.01
1063 2080 0.107312 CAGACCATCCCAGCCTCTTG 60.107 60.000 0.00 0.00 0.00 3.02
1064 2081 0.252881 TCAGACCATCCCAGCCTCTT 60.253 55.000 0.00 0.00 0.00 2.85
1065 2082 0.030297 ATCAGACCATCCCAGCCTCT 60.030 55.000 0.00 0.00 0.00 3.69
1066 2083 0.108207 CATCAGACCATCCCAGCCTC 59.892 60.000 0.00 0.00 0.00 4.70
1067 2084 0.622738 ACATCAGACCATCCCAGCCT 60.623 55.000 0.00 0.00 0.00 4.58
1068 2085 0.465097 CACATCAGACCATCCCAGCC 60.465 60.000 0.00 0.00 0.00 4.85
1069 2086 0.254178 ACACATCAGACCATCCCAGC 59.746 55.000 0.00 0.00 0.00 4.85
1070 2087 2.103771 CCTACACATCAGACCATCCCAG 59.896 54.545 0.00 0.00 0.00 4.45
1071 2088 2.118679 CCTACACATCAGACCATCCCA 58.881 52.381 0.00 0.00 0.00 4.37
1072 2089 2.119495 ACCTACACATCAGACCATCCC 58.881 52.381 0.00 0.00 0.00 3.85
1073 2090 2.158900 CCACCTACACATCAGACCATCC 60.159 54.545 0.00 0.00 0.00 3.51
1074 2091 2.766263 TCCACCTACACATCAGACCATC 59.234 50.000 0.00 0.00 0.00 3.51
1075 2092 2.768527 CTCCACCTACACATCAGACCAT 59.231 50.000 0.00 0.00 0.00 3.55
1076 2093 2.179427 CTCCACCTACACATCAGACCA 58.821 52.381 0.00 0.00 0.00 4.02
1077 2094 1.482593 CCTCCACCTACACATCAGACC 59.517 57.143 0.00 0.00 0.00 3.85
1078 2095 2.428890 CTCCTCCACCTACACATCAGAC 59.571 54.545 0.00 0.00 0.00 3.51
1079 2096 2.043115 ACTCCTCCACCTACACATCAGA 59.957 50.000 0.00 0.00 0.00 3.27
1080 2097 2.167281 CACTCCTCCACCTACACATCAG 59.833 54.545 0.00 0.00 0.00 2.90
1081 2098 2.179427 CACTCCTCCACCTACACATCA 58.821 52.381 0.00 0.00 0.00 3.07
1082 2099 1.482593 CCACTCCTCCACCTACACATC 59.517 57.143 0.00 0.00 0.00 3.06
1083 2100 1.078823 TCCACTCCTCCACCTACACAT 59.921 52.381 0.00 0.00 0.00 3.21
1084 2101 0.485543 TCCACTCCTCCACCTACACA 59.514 55.000 0.00 0.00 0.00 3.72
1085 2102 1.757699 GATCCACTCCTCCACCTACAC 59.242 57.143 0.00 0.00 0.00 2.90
1086 2103 1.343075 GGATCCACTCCTCCACCTACA 60.343 57.143 6.95 0.00 41.29 2.74
1087 2104 1.415200 GGATCCACTCCTCCACCTAC 58.585 60.000 6.95 0.00 41.29 3.18
1088 2105 0.106167 CGGATCCACTCCTCCACCTA 60.106 60.000 13.41 0.00 42.47 3.08
1089 2106 1.381872 CGGATCCACTCCTCCACCT 60.382 63.158 13.41 0.00 42.47 4.00
1090 2107 2.435693 CCGGATCCACTCCTCCACC 61.436 68.421 13.41 0.00 42.47 4.61
1091 2108 3.095347 GCCGGATCCACTCCTCCAC 62.095 68.421 13.41 0.00 42.47 4.02
1092 2109 2.764128 GCCGGATCCACTCCTCCA 60.764 66.667 13.41 0.00 42.47 3.86
1093 2110 3.551407 GGCCGGATCCACTCCTCC 61.551 72.222 13.41 0.00 42.47 4.30
1094 2111 3.917760 CGGCCGGATCCACTCCTC 61.918 72.222 20.10 0.00 42.47 3.71
1150 2167 1.017387 CCCTATGAAAGGCTCAACGC 58.983 55.000 0.00 0.00 45.03 4.84
1151 2168 2.403252 ACCCTATGAAAGGCTCAACG 57.597 50.000 0.00 0.00 45.03 4.10
1152 2169 2.678336 CGAACCCTATGAAAGGCTCAAC 59.322 50.000 0.00 0.00 45.03 3.18
1153 2170 2.569853 TCGAACCCTATGAAAGGCTCAA 59.430 45.455 0.00 0.00 45.03 3.02
1154 2171 2.168521 CTCGAACCCTATGAAAGGCTCA 59.831 50.000 0.00 0.00 45.03 4.26
1155 2172 2.483889 CCTCGAACCCTATGAAAGGCTC 60.484 54.545 0.00 0.00 45.03 4.70
1156 2173 1.486726 CCTCGAACCCTATGAAAGGCT 59.513 52.381 0.00 0.00 45.03 4.58
1157 2174 1.475213 CCCTCGAACCCTATGAAAGGC 60.475 57.143 0.00 0.00 45.03 4.35
1158 2175 1.141053 CCCCTCGAACCCTATGAAAGG 59.859 57.143 0.00 0.00 46.09 3.11
1159 2176 1.141053 CCCCCTCGAACCCTATGAAAG 59.859 57.143 0.00 0.00 0.00 2.62
1160 2177 1.209621 CCCCCTCGAACCCTATGAAA 58.790 55.000 0.00 0.00 0.00 2.69
1161 2178 0.340558 TCCCCCTCGAACCCTATGAA 59.659 55.000 0.00 0.00 0.00 2.57
1162 2179 0.105658 CTCCCCCTCGAACCCTATGA 60.106 60.000 0.00 0.00 0.00 2.15
1163 2180 0.105658 TCTCCCCCTCGAACCCTATG 60.106 60.000 0.00 0.00 0.00 2.23
1164 2181 0.640495 TTCTCCCCCTCGAACCCTAT 59.360 55.000 0.00 0.00 0.00 2.57
1165 2182 0.414629 TTTCTCCCCCTCGAACCCTA 59.585 55.000 0.00 0.00 0.00 3.53
1166 2183 0.253207 ATTTCTCCCCCTCGAACCCT 60.253 55.000 0.00 0.00 0.00 4.34
1167 2184 0.107165 CATTTCTCCCCCTCGAACCC 60.107 60.000 0.00 0.00 0.00 4.11
1168 2185 0.618981 ACATTTCTCCCCCTCGAACC 59.381 55.000 0.00 0.00 0.00 3.62
1169 2186 1.739371 CGACATTTCTCCCCCTCGAAC 60.739 57.143 0.00 0.00 0.00 3.95
1170 2187 0.535335 CGACATTTCTCCCCCTCGAA 59.465 55.000 0.00 0.00 0.00 3.71
1171 2188 0.323999 TCGACATTTCTCCCCCTCGA 60.324 55.000 0.00 0.00 0.00 4.04
1172 2189 0.103208 CTCGACATTTCTCCCCCTCG 59.897 60.000 0.00 0.00 0.00 4.63
1173 2190 0.466124 CCTCGACATTTCTCCCCCTC 59.534 60.000 0.00 0.00 0.00 4.30
1174 2191 0.983378 CCCTCGACATTTCTCCCCCT 60.983 60.000 0.00 0.00 0.00 4.79
1175 2192 0.981277 TCCCTCGACATTTCTCCCCC 60.981 60.000 0.00 0.00 0.00 5.40
1176 2193 0.466124 CTCCCTCGACATTTCTCCCC 59.534 60.000 0.00 0.00 0.00 4.81
1177 2194 1.410882 CTCTCCCTCGACATTTCTCCC 59.589 57.143 0.00 0.00 0.00 4.30
1178 2195 1.410882 CCTCTCCCTCGACATTTCTCC 59.589 57.143 0.00 0.00 0.00 3.71
1179 2196 1.410882 CCCTCTCCCTCGACATTTCTC 59.589 57.143 0.00 0.00 0.00 2.87
1180 2197 1.490574 CCCTCTCCCTCGACATTTCT 58.509 55.000 0.00 0.00 0.00 2.52
1181 2198 0.179070 GCCCTCTCCCTCGACATTTC 60.179 60.000 0.00 0.00 0.00 2.17
1182 2199 0.909610 TGCCCTCTCCCTCGACATTT 60.910 55.000 0.00 0.00 0.00 2.32
1183 2200 1.306141 TGCCCTCTCCCTCGACATT 60.306 57.895 0.00 0.00 0.00 2.71
1184 2201 1.760086 CTGCCCTCTCCCTCGACAT 60.760 63.158 0.00 0.00 0.00 3.06
1185 2202 2.363018 CTGCCCTCTCCCTCGACA 60.363 66.667 0.00 0.00 0.00 4.35
1186 2203 3.844090 GCTGCCCTCTCCCTCGAC 61.844 72.222 0.00 0.00 0.00 4.20
1187 2204 4.067512 AGCTGCCCTCTCCCTCGA 62.068 66.667 0.00 0.00 0.00 4.04
1188 2205 3.847602 CAGCTGCCCTCTCCCTCG 61.848 72.222 0.00 0.00 0.00 4.63
1189 2206 1.344191 AATCAGCTGCCCTCTCCCTC 61.344 60.000 9.47 0.00 0.00 4.30
1190 2207 1.307691 AATCAGCTGCCCTCTCCCT 60.308 57.895 9.47 0.00 0.00 4.20
1191 2208 1.148048 GAATCAGCTGCCCTCTCCC 59.852 63.158 9.47 0.00 0.00 4.30
1192 2209 0.179051 CTGAATCAGCTGCCCTCTCC 60.179 60.000 9.47 0.00 0.00 3.71
1193 2210 0.179051 CCTGAATCAGCTGCCCTCTC 60.179 60.000 9.47 1.28 0.00 3.20
1194 2211 0.619832 TCCTGAATCAGCTGCCCTCT 60.620 55.000 9.47 0.00 0.00 3.69
1195 2212 0.179051 CTCCTGAATCAGCTGCCCTC 60.179 60.000 9.47 5.72 0.00 4.30
1196 2213 0.619832 TCTCCTGAATCAGCTGCCCT 60.620 55.000 9.47 0.00 0.00 5.19
1197 2214 0.179051 CTCTCCTGAATCAGCTGCCC 60.179 60.000 9.47 0.61 0.00 5.36
1198 2215 0.829333 TCTCTCCTGAATCAGCTGCC 59.171 55.000 9.47 1.00 0.00 4.85
1199 2216 2.158928 ACATCTCTCCTGAATCAGCTGC 60.159 50.000 9.47 0.00 0.00 5.25
1200 2217 3.459145 CACATCTCTCCTGAATCAGCTG 58.541 50.000 7.63 7.63 0.00 4.24
1201 2218 2.435069 CCACATCTCTCCTGAATCAGCT 59.565 50.000 4.40 0.00 0.00 4.24
1202 2219 2.485124 CCCACATCTCTCCTGAATCAGC 60.485 54.545 4.40 0.00 0.00 4.26
1203 2220 2.104451 CCCCACATCTCTCCTGAATCAG 59.896 54.545 2.68 2.68 0.00 2.90
1204 2221 2.121948 CCCCACATCTCTCCTGAATCA 58.878 52.381 0.00 0.00 0.00 2.57
1205 2222 2.122768 ACCCCACATCTCTCCTGAATC 58.877 52.381 0.00 0.00 0.00 2.52
1206 2223 2.277008 ACCCCACATCTCTCCTGAAT 57.723 50.000 0.00 0.00 0.00 2.57
1207 2224 2.467880 GTACCCCACATCTCTCCTGAA 58.532 52.381 0.00 0.00 0.00 3.02
1208 2225 1.343075 GGTACCCCACATCTCTCCTGA 60.343 57.143 0.00 0.00 0.00 3.86
1209 2226 1.123928 GGTACCCCACATCTCTCCTG 58.876 60.000 0.00 0.00 0.00 3.86
1210 2227 0.397254 CGGTACCCCACATCTCTCCT 60.397 60.000 6.25 0.00 0.00 3.69
1211 2228 1.400530 CCGGTACCCCACATCTCTCC 61.401 65.000 6.25 0.00 0.00 3.71
1212 2229 0.686769 ACCGGTACCCCACATCTCTC 60.687 60.000 4.49 0.00 0.00 3.20
1213 2230 0.252558 AACCGGTACCCCACATCTCT 60.253 55.000 8.00 0.00 0.00 3.10
1214 2231 0.177373 GAACCGGTACCCCACATCTC 59.823 60.000 8.00 0.00 0.00 2.75
1215 2232 0.252558 AGAACCGGTACCCCACATCT 60.253 55.000 8.00 0.30 0.00 2.90
1216 2233 0.107848 CAGAACCGGTACCCCACATC 60.108 60.000 8.00 0.00 0.00 3.06
1217 2234 1.559065 CCAGAACCGGTACCCCACAT 61.559 60.000 8.00 0.00 0.00 3.21
1218 2235 2.218454 CCAGAACCGGTACCCCACA 61.218 63.158 8.00 0.00 0.00 4.17
1219 2236 1.896122 CTCCAGAACCGGTACCCCAC 61.896 65.000 8.00 0.00 0.00 4.61
1220 2237 1.611261 CTCCAGAACCGGTACCCCA 60.611 63.158 8.00 0.00 0.00 4.96
1221 2238 2.364780 CCTCCAGAACCGGTACCCC 61.365 68.421 8.00 0.00 0.00 4.95
1222 2239 1.305549 TCCTCCAGAACCGGTACCC 60.306 63.158 8.00 0.00 0.00 3.69
1223 2240 0.614134 AGTCCTCCAGAACCGGTACC 60.614 60.000 8.00 0.16 0.00 3.34
1224 2241 1.067071 CAAGTCCTCCAGAACCGGTAC 60.067 57.143 8.00 0.00 0.00 3.34
1225 2242 1.263356 CAAGTCCTCCAGAACCGGTA 58.737 55.000 8.00 0.00 0.00 4.02
1226 2243 1.481056 CCAAGTCCTCCAGAACCGGT 61.481 60.000 0.00 0.00 0.00 5.28
1227 2244 1.296715 CCAAGTCCTCCAGAACCGG 59.703 63.158 0.00 0.00 0.00 5.28
1228 2245 0.037232 GACCAAGTCCTCCAGAACCG 60.037 60.000 0.00 0.00 0.00 4.44
1229 2246 3.938109 GACCAAGTCCTCCAGAACC 57.062 57.895 0.00 0.00 0.00 3.62
1239 2256 0.106149 ACACGTCCAAGGACCAAGTC 59.894 55.000 13.35 0.00 41.76 3.01
1240 2257 0.106149 GACACGTCCAAGGACCAAGT 59.894 55.000 13.35 9.19 41.76 3.16
1241 2258 0.105964 TGACACGTCCAAGGACCAAG 59.894 55.000 13.35 6.24 41.76 3.61
1242 2259 0.762418 ATGACACGTCCAAGGACCAA 59.238 50.000 13.35 0.00 41.76 3.67
1243 2260 0.762418 AATGACACGTCCAAGGACCA 59.238 50.000 13.35 6.08 41.76 4.02
1244 2261 1.892209 AAATGACACGTCCAAGGACC 58.108 50.000 13.35 0.41 41.76 4.46
1245 2262 2.225727 GGAAAATGACACGTCCAAGGAC 59.774 50.000 9.22 9.22 41.40 3.85
1246 2263 2.105821 AGGAAAATGACACGTCCAAGGA 59.894 45.455 0.00 0.00 32.19 3.36
1247 2264 2.504367 AGGAAAATGACACGTCCAAGG 58.496 47.619 0.00 0.00 32.19 3.61
1248 2265 3.684788 CCTAGGAAAATGACACGTCCAAG 59.315 47.826 1.05 0.00 32.19 3.61
1249 2266 3.071892 ACCTAGGAAAATGACACGTCCAA 59.928 43.478 17.98 0.00 32.19 3.53
1250 2267 2.635915 ACCTAGGAAAATGACACGTCCA 59.364 45.455 17.98 0.00 32.19 4.02
1251 2268 3.000727 CACCTAGGAAAATGACACGTCC 58.999 50.000 17.98 0.00 0.00 4.79
1252 2269 3.000727 CCACCTAGGAAAATGACACGTC 58.999 50.000 17.98 0.00 41.22 4.34
1253 2270 2.370849 ACCACCTAGGAAAATGACACGT 59.629 45.455 17.98 0.00 41.22 4.49
1254 2271 2.742053 CACCACCTAGGAAAATGACACG 59.258 50.000 17.98 0.00 41.22 4.49
1255 2272 3.081804 CCACCACCTAGGAAAATGACAC 58.918 50.000 17.98 0.00 41.22 3.67
1256 2273 2.554344 GCCACCACCTAGGAAAATGACA 60.554 50.000 17.98 0.00 41.22 3.58
1257 2274 2.092323 GCCACCACCTAGGAAAATGAC 58.908 52.381 17.98 0.00 41.22 3.06
1258 2275 1.707989 TGCCACCACCTAGGAAAATGA 59.292 47.619 17.98 0.00 41.22 2.57
1259 2276 2.214376 TGCCACCACCTAGGAAAATG 57.786 50.000 17.98 7.88 41.22 2.32
1260 2277 2.990740 TTGCCACCACCTAGGAAAAT 57.009 45.000 17.98 0.00 41.22 1.82
1261 2278 2.757894 TTTGCCACCACCTAGGAAAA 57.242 45.000 17.98 1.66 41.22 2.29
1262 2279 2.757894 TTTTGCCACCACCTAGGAAA 57.242 45.000 17.98 0.00 41.22 3.13
1263 2280 2.524306 CATTTTGCCACCACCTAGGAA 58.476 47.619 17.98 0.00 41.22 3.36
1264 2281 1.272425 CCATTTTGCCACCACCTAGGA 60.272 52.381 17.98 0.00 41.22 2.94
1265 2282 1.185315 CCATTTTGCCACCACCTAGG 58.815 55.000 7.41 7.41 45.67 3.02
1266 2283 0.532115 GCCATTTTGCCACCACCTAG 59.468 55.000 0.00 0.00 0.00 3.02
1267 2284 2.664825 GCCATTTTGCCACCACCTA 58.335 52.632 0.00 0.00 0.00 3.08
1268 2285 3.470433 GCCATTTTGCCACCACCT 58.530 55.556 0.00 0.00 0.00 4.00
1287 2304 3.754850 AGGAAAGGGTTGCACGTATTTAC 59.245 43.478 0.00 0.00 0.00 2.01
1288 2305 4.023726 AGGAAAGGGTTGCACGTATTTA 57.976 40.909 0.00 0.00 0.00 1.40
1289 2306 2.871453 AGGAAAGGGTTGCACGTATTT 58.129 42.857 0.00 0.00 0.00 1.40
1290 2307 2.579410 AGGAAAGGGTTGCACGTATT 57.421 45.000 0.00 0.00 0.00 1.89
1291 2308 2.579410 AAGGAAAGGGTTGCACGTAT 57.421 45.000 0.00 0.00 0.00 3.06
1292 2309 2.351706 AAAGGAAAGGGTTGCACGTA 57.648 45.000 0.00 0.00 0.00 3.57
1293 2310 1.136110 CAAAAGGAAAGGGTTGCACGT 59.864 47.619 0.00 0.00 0.00 4.49
1294 2311 1.136110 ACAAAAGGAAAGGGTTGCACG 59.864 47.619 0.00 0.00 0.00 5.34
1295 2312 2.979814 ACAAAAGGAAAGGGTTGCAC 57.020 45.000 0.00 0.00 0.00 4.57
1296 2313 3.990959 AAACAAAAGGAAAGGGTTGCA 57.009 38.095 0.00 0.00 0.00 4.08
1297 2314 3.308595 CGAAAACAAAAGGAAAGGGTTGC 59.691 43.478 0.00 0.00 0.00 4.17
1298 2315 4.328712 CACGAAAACAAAAGGAAAGGGTTG 59.671 41.667 0.00 0.00 0.00 3.77
1299 2316 4.500127 CACGAAAACAAAAGGAAAGGGTT 58.500 39.130 0.00 0.00 0.00 4.11
1300 2317 3.118920 CCACGAAAACAAAAGGAAAGGGT 60.119 43.478 0.00 0.00 0.00 4.34
1301 2318 3.131400 TCCACGAAAACAAAAGGAAAGGG 59.869 43.478 0.00 0.00 0.00 3.95
1302 2319 4.359706 CTCCACGAAAACAAAAGGAAAGG 58.640 43.478 0.00 0.00 0.00 3.11
1303 2320 3.796717 GCTCCACGAAAACAAAAGGAAAG 59.203 43.478 0.00 0.00 0.00 2.62
1304 2321 3.429684 GGCTCCACGAAAACAAAAGGAAA 60.430 43.478 0.00 0.00 0.00 3.13
1305 2322 2.100087 GGCTCCACGAAAACAAAAGGAA 59.900 45.455 0.00 0.00 0.00 3.36
1306 2323 1.679153 GGCTCCACGAAAACAAAAGGA 59.321 47.619 0.00 0.00 0.00 3.36
1307 2324 1.269569 GGGCTCCACGAAAACAAAAGG 60.270 52.381 0.00 0.00 0.00 3.11
1308 2325 1.599419 CGGGCTCCACGAAAACAAAAG 60.599 52.381 0.00 0.00 0.00 2.27
1309 2326 0.382515 CGGGCTCCACGAAAACAAAA 59.617 50.000 0.00 0.00 0.00 2.44
1310 2327 1.448922 CCGGGCTCCACGAAAACAAA 61.449 55.000 0.00 0.00 0.00 2.83
1311 2328 1.894756 CCGGGCTCCACGAAAACAA 60.895 57.895 0.00 0.00 0.00 2.83
1312 2329 2.281208 CCGGGCTCCACGAAAACA 60.281 61.111 0.00 0.00 0.00 2.83
1313 2330 1.848932 GAACCGGGCTCCACGAAAAC 61.849 60.000 6.32 0.00 0.00 2.43
1314 2331 1.598685 GAACCGGGCTCCACGAAAA 60.599 57.895 6.32 0.00 0.00 2.29
1315 2332 2.031465 GAACCGGGCTCCACGAAA 59.969 61.111 6.32 0.00 0.00 3.46
1316 2333 2.444700 GAAGAACCGGGCTCCACGAA 62.445 60.000 6.32 0.00 0.00 3.85
1317 2334 2.920912 AAGAACCGGGCTCCACGA 60.921 61.111 6.32 0.00 0.00 4.35
1318 2335 2.434359 GAAGAACCGGGCTCCACG 60.434 66.667 6.32 0.00 0.00 4.94
1319 2336 2.434359 CGAAGAACCGGGCTCCAC 60.434 66.667 6.32 0.00 0.00 4.02
1320 2337 3.702048 CCGAAGAACCGGGCTCCA 61.702 66.667 6.32 0.00 45.43 3.86
1338 2355 2.918131 GCTGTAGTGCAAAAAGGCGAAG 60.918 50.000 0.00 0.00 36.28 3.79
1339 2356 1.001815 GCTGTAGTGCAAAAAGGCGAA 60.002 47.619 0.00 0.00 36.28 4.70
1340 2357 0.591170 GCTGTAGTGCAAAAAGGCGA 59.409 50.000 0.00 0.00 36.28 5.54
1341 2358 0.387239 GGCTGTAGTGCAAAAAGGCG 60.387 55.000 0.00 0.00 36.28 5.52
1342 2359 0.038251 GGGCTGTAGTGCAAAAAGGC 60.038 55.000 5.68 5.68 34.04 4.35
1343 2360 1.270550 CTGGGCTGTAGTGCAAAAAGG 59.729 52.381 0.00 0.00 34.04 3.11
1344 2361 1.336240 GCTGGGCTGTAGTGCAAAAAG 60.336 52.381 0.00 0.00 34.04 2.27
1345 2362 0.673437 GCTGGGCTGTAGTGCAAAAA 59.327 50.000 0.00 0.00 34.04 1.94
1346 2363 0.178992 AGCTGGGCTGTAGTGCAAAA 60.179 50.000 0.00 0.00 37.57 2.44
1347 2364 0.690192 TAGCTGGGCTGTAGTGCAAA 59.310 50.000 0.00 0.00 40.10 3.68
1348 2365 0.690192 TTAGCTGGGCTGTAGTGCAA 59.310 50.000 0.00 0.00 40.10 4.08
1349 2366 0.250234 CTTAGCTGGGCTGTAGTGCA 59.750 55.000 0.00 0.00 40.10 4.57
1350 2367 1.092345 GCTTAGCTGGGCTGTAGTGC 61.092 60.000 0.00 0.00 40.10 4.40
1351 2368 0.539051 AGCTTAGCTGGGCTGTAGTG 59.461 55.000 5.70 0.00 40.10 2.74
1352 2369 2.998493 AGCTTAGCTGGGCTGTAGT 58.002 52.632 5.70 0.00 40.10 2.73
1362 2379 2.611292 GTCGAATTCATGCAGCTTAGCT 59.389 45.455 0.00 0.00 40.77 3.32
1363 2380 2.611292 AGTCGAATTCATGCAGCTTAGC 59.389 45.455 6.22 0.00 0.00 3.09
1364 2381 4.093998 ACAAGTCGAATTCATGCAGCTTAG 59.906 41.667 6.22 0.00 0.00 2.18
1365 2382 4.002982 ACAAGTCGAATTCATGCAGCTTA 58.997 39.130 6.22 0.00 0.00 3.09
1366 2383 2.816087 ACAAGTCGAATTCATGCAGCTT 59.184 40.909 6.22 0.00 0.00 3.74
1367 2384 2.161012 CACAAGTCGAATTCATGCAGCT 59.839 45.455 6.22 0.00 0.00 4.24
1368 2385 2.512885 CACAAGTCGAATTCATGCAGC 58.487 47.619 6.22 0.00 0.00 5.25
1369 2386 2.743664 TCCACAAGTCGAATTCATGCAG 59.256 45.455 6.22 0.00 0.00 4.41
1370 2387 2.743664 CTCCACAAGTCGAATTCATGCA 59.256 45.455 6.22 0.00 0.00 3.96
1371 2388 2.476854 GCTCCACAAGTCGAATTCATGC 60.477 50.000 6.22 0.00 0.00 4.06
1372 2389 3.005554 AGCTCCACAAGTCGAATTCATG 58.994 45.455 6.22 0.00 0.00 3.07
1373 2390 3.265791 GAGCTCCACAAGTCGAATTCAT 58.734 45.455 0.87 0.00 0.00 2.57
1374 2391 2.037121 TGAGCTCCACAAGTCGAATTCA 59.963 45.455 12.15 0.00 0.00 2.57
1375 2392 2.670414 CTGAGCTCCACAAGTCGAATTC 59.330 50.000 12.15 0.00 0.00 2.17
1376 2393 2.300152 TCTGAGCTCCACAAGTCGAATT 59.700 45.455 12.15 0.00 0.00 2.17
1377 2394 1.895798 TCTGAGCTCCACAAGTCGAAT 59.104 47.619 12.15 0.00 0.00 3.34
1378 2395 1.000163 GTCTGAGCTCCACAAGTCGAA 60.000 52.381 12.15 0.00 0.00 3.71
1379 2396 0.598562 GTCTGAGCTCCACAAGTCGA 59.401 55.000 12.15 0.00 0.00 4.20
1380 2397 0.730834 CGTCTGAGCTCCACAAGTCG 60.731 60.000 12.15 7.60 0.00 4.18
1381 2398 0.315568 ACGTCTGAGCTCCACAAGTC 59.684 55.000 12.15 0.00 0.00 3.01
1382 2399 0.753262 AACGTCTGAGCTCCACAAGT 59.247 50.000 12.15 2.16 0.00 3.16
1383 2400 1.423395 GAACGTCTGAGCTCCACAAG 58.577 55.000 12.15 1.36 0.00 3.16
1384 2401 0.318699 CGAACGTCTGAGCTCCACAA 60.319 55.000 12.15 0.00 0.00 3.33
1385 2402 1.285950 CGAACGTCTGAGCTCCACA 59.714 57.895 12.15 0.00 0.00 4.17
1386 2403 1.444553 CCGAACGTCTGAGCTCCAC 60.445 63.158 12.15 7.06 0.00 4.02
1387 2404 2.636412 CCCGAACGTCTGAGCTCCA 61.636 63.158 12.15 0.00 0.00 3.86
1388 2405 2.182030 CCCGAACGTCTGAGCTCC 59.818 66.667 12.15 0.00 0.00 4.70
1389 2406 2.507324 GCCCGAACGTCTGAGCTC 60.507 66.667 6.82 6.82 0.00 4.09
1390 2407 4.421479 CGCCCGAACGTCTGAGCT 62.421 66.667 0.00 0.00 0.00 4.09
1391 2408 4.719369 ACGCCCGAACGTCTGAGC 62.719 66.667 0.00 0.00 44.43 4.26
1398 2415 1.872679 GCTCTTAGACGCCCGAACG 60.873 63.158 0.00 0.00 39.50 3.95
1399 2416 0.108756 AAGCTCTTAGACGCCCGAAC 60.109 55.000 0.00 0.00 0.00 3.95
1400 2417 1.404391 CTAAGCTCTTAGACGCCCGAA 59.596 52.381 10.35 0.00 43.90 4.30
1401 2418 1.022735 CTAAGCTCTTAGACGCCCGA 58.977 55.000 10.35 0.00 43.90 5.14
1402 2419 1.022735 TCTAAGCTCTTAGACGCCCG 58.977 55.000 13.67 0.00 44.58 6.13
1408 2425 5.822204 AGAAGGAGTGTCTAAGCTCTTAGA 58.178 41.667 13.67 13.67 46.51 2.10
1409 2426 6.405397 GGAAGAAGGAGTGTCTAAGCTCTTAG 60.405 46.154 9.75 9.75 42.86 2.18
1410 2427 5.419471 GGAAGAAGGAGTGTCTAAGCTCTTA 59.581 44.000 0.00 0.00 32.67 2.10
1411 2428 4.221924 GGAAGAAGGAGTGTCTAAGCTCTT 59.778 45.833 0.00 0.00 32.67 2.85
1412 2429 3.767131 GGAAGAAGGAGTGTCTAAGCTCT 59.233 47.826 0.00 0.00 32.67 4.09
1413 2430 3.511934 TGGAAGAAGGAGTGTCTAAGCTC 59.488 47.826 0.00 0.00 0.00 4.09
1414 2431 3.511477 TGGAAGAAGGAGTGTCTAAGCT 58.489 45.455 0.00 0.00 0.00 3.74
1415 2432 3.963428 TGGAAGAAGGAGTGTCTAAGC 57.037 47.619 0.00 0.00 0.00 3.09
1416 2433 5.656416 AGAGATGGAAGAAGGAGTGTCTAAG 59.344 44.000 0.00 0.00 0.00 2.18
1417 2434 5.584913 AGAGATGGAAGAAGGAGTGTCTAA 58.415 41.667 0.00 0.00 0.00 2.10
1418 2435 5.197451 GAGAGATGGAAGAAGGAGTGTCTA 58.803 45.833 0.00 0.00 0.00 2.59
1419 2436 4.023291 GAGAGATGGAAGAAGGAGTGTCT 58.977 47.826 0.00 0.00 0.00 3.41
1421 2438 3.513515 GTGAGAGATGGAAGAAGGAGTGT 59.486 47.826 0.00 0.00 0.00 3.55
1435 2452 5.068636 AGCAAATTTCTGTGTGTGAGAGAT 58.931 37.500 0.00 0.00 0.00 2.75
1449 2466 6.366877 ACTGCATAACACATGAAGCAAATTTC 59.633 34.615 0.00 0.00 0.00 2.17
1461 2836 1.031571 CCGGGCACTGCATAACACAT 61.032 55.000 2.82 0.00 0.00 3.21
1464 2839 2.749839 GCCGGGCACTGCATAACA 60.750 61.111 15.62 0.00 0.00 2.41
1465 2840 3.876198 CGCCGGGCACTGCATAAC 61.876 66.667 20.71 0.00 0.00 1.89
1466 2841 3.613877 TTCGCCGGGCACTGCATAA 62.614 57.895 20.71 0.00 0.00 1.90
1467 2842 4.089239 TTCGCCGGGCACTGCATA 62.089 61.111 20.71 0.00 0.00 3.14
1633 3011 1.451927 CCGCCATGCAGTACACCAT 60.452 57.895 0.00 0.00 0.00 3.55
2138 3531 2.892425 CCTCCTTGTCGATGCGGC 60.892 66.667 0.00 0.00 0.00 6.53
2179 3578 2.185387 AGTAAGTAATCAGCCACGGGT 58.815 47.619 0.00 0.00 0.00 5.28
2230 3633 3.309954 CACTCCAGCTTAATTAAGGCGAC 59.690 47.826 23.37 9.31 33.95 5.19
2270 3678 1.545582 CCAAATCGCCAATGTCCAACT 59.454 47.619 0.00 0.00 0.00 3.16
2299 3707 1.825474 CCTTCGATCACTACCACACCT 59.175 52.381 0.00 0.00 0.00 4.00
2352 3822 3.634504 AGATTAGCCAACATTGCCATGA 58.365 40.909 4.52 0.00 34.11 3.07
2368 3838 5.952526 TCGACCAAGTATGCGATAGATTA 57.047 39.130 0.00 0.00 39.76 1.75
2372 3842 4.500837 GCATATCGACCAAGTATGCGATAG 59.499 45.833 11.11 0.00 45.32 2.08
2379 3849 2.610479 CGGCTGCATATCGACCAAGTAT 60.610 50.000 0.50 0.00 0.00 2.12
2383 3853 0.392706 ATCGGCTGCATATCGACCAA 59.607 50.000 0.50 0.00 35.70 3.67
2384 3854 0.038251 GATCGGCTGCATATCGACCA 60.038 55.000 0.50 0.00 35.70 4.02
2385 3855 0.038251 TGATCGGCTGCATATCGACC 60.038 55.000 0.50 0.52 35.70 4.79
2386 3856 1.063806 GTGATCGGCTGCATATCGAC 58.936 55.000 0.50 2.04 35.70 4.20
2388 3858 1.066136 CAGTGATCGGCTGCATATCG 58.934 55.000 0.50 0.00 0.00 2.92
2389 3859 1.270518 ACCAGTGATCGGCTGCATATC 60.271 52.381 0.50 4.26 32.93 1.63
2399 3869 6.645415 GGATTACCAATAGTTACCAGTGATCG 59.355 42.308 0.00 0.00 35.97 3.69
2412 3882 5.163195 ACAGGCCAAGTAGGATTACCAATAG 60.163 44.000 5.01 0.00 41.22 1.73
2414 3884 3.527665 ACAGGCCAAGTAGGATTACCAAT 59.472 43.478 5.01 0.00 41.22 3.16
2415 3885 2.916934 ACAGGCCAAGTAGGATTACCAA 59.083 45.455 5.01 0.00 41.22 3.67
2417 3887 3.054655 TGAACAGGCCAAGTAGGATTACC 60.055 47.826 5.01 0.00 41.22 2.85
2454 3928 9.058424 GTCAAACAAGTAGAGTAAAACAAACAC 57.942 33.333 0.00 0.00 0.00 3.32
2459 3933 6.821665 AGCAGTCAAACAAGTAGAGTAAAACA 59.178 34.615 0.00 0.00 0.00 2.83
2460 3934 7.126398 CAGCAGTCAAACAAGTAGAGTAAAAC 58.874 38.462 0.00 0.00 0.00 2.43
2513 3987 6.583806 CACAAACAATCAAGATCCTACAAAGC 59.416 38.462 0.00 0.00 0.00 3.51
2538 4013 1.447938 CAGTTTTCGCGCACAATTGAC 59.552 47.619 13.59 2.70 0.00 3.18
2539 4014 1.332065 TCAGTTTTCGCGCACAATTGA 59.668 42.857 13.59 6.26 0.00 2.57
2540 4015 1.752753 TCAGTTTTCGCGCACAATTG 58.247 45.000 8.75 3.24 0.00 2.32
2541 4016 2.483583 TTCAGTTTTCGCGCACAATT 57.516 40.000 8.75 0.00 0.00 2.32
2542 4017 2.287547 ACATTCAGTTTTCGCGCACAAT 60.288 40.909 8.75 0.00 0.00 2.71
2547 4022 1.136085 TGCTACATTCAGTTTTCGCGC 60.136 47.619 0.00 0.00 0.00 6.86
2548 4023 2.411748 TCTGCTACATTCAGTTTTCGCG 59.588 45.455 0.00 0.00 33.48 5.87
2550 4025 5.732288 GCTATCTGCTACATTCAGTTTTCG 58.268 41.667 0.00 0.00 38.95 3.46
2577 4060 1.145377 CCATTTCCCTACGACGGGG 59.855 63.158 12.64 0.62 44.78 5.73
2612 4126 8.585471 TTATGCCTCTTGAATTTCAGAGAAAT 57.415 30.769 19.10 15.32 0.00 2.17
2626 4163 3.877559 TCCACTGACATTATGCCTCTTG 58.122 45.455 0.00 0.00 0.00 3.02
2702 4239 2.420022 CCTCCATTTAGCAAGAACACCG 59.580 50.000 0.00 0.00 0.00 4.94
2716 4256 2.661176 TCCTACAAGGTCCCTCCATT 57.339 50.000 0.00 0.00 36.53 3.16
2717 4257 2.293856 ACATCCTACAAGGTCCCTCCAT 60.294 50.000 0.00 0.00 36.53 3.41
2718 4258 1.080498 ACATCCTACAAGGTCCCTCCA 59.920 52.381 0.00 0.00 36.53 3.86
2762 4331 9.383519 GGAAATTCTGTCATAAGTCATAACTCA 57.616 33.333 0.00 0.00 33.48 3.41
2769 4338 9.605275 CTAGATTGGAAATTCTGTCATAAGTCA 57.395 33.333 0.00 0.00 0.00 3.41
2770 4339 9.606631 ACTAGATTGGAAATTCTGTCATAAGTC 57.393 33.333 0.00 0.00 0.00 3.01
2771 4340 9.388506 CACTAGATTGGAAATTCTGTCATAAGT 57.611 33.333 0.00 0.00 0.00 2.24
2772 4341 8.834465 CCACTAGATTGGAAATTCTGTCATAAG 58.166 37.037 0.00 0.00 39.24 1.73
2780 4349 6.353082 CCACTACCCACTAGATTGGAAATTCT 60.353 42.308 0.00 0.00 39.24 2.40
2833 4742 2.753043 CATGCCCAGCCTCACACC 60.753 66.667 0.00 0.00 0.00 4.16
2901 4812 4.261155 CGCAGGAACAAGAAACAAATGAGA 60.261 41.667 0.00 0.00 0.00 3.27
2964 4878 2.809601 GCGTGTCCACAGCCTACG 60.810 66.667 0.00 0.00 37.77 3.51
2999 4945 9.186837 AGTATCGAATACTAGTTCCAGAGAAAA 57.813 33.333 0.00 0.00 43.93 2.29
3000 4946 8.749026 AGTATCGAATACTAGTTCCAGAGAAA 57.251 34.615 0.00 0.00 43.93 2.52
3018 4977 9.706691 GGAAATGTTAATCCATTAGAGTATCGA 57.293 33.333 0.00 0.00 35.36 3.59
3047 5006 5.637006 AAGGAATAACTGCAATTTACGCA 57.363 34.783 0.00 0.00 37.88 5.24
3110 5078 0.376852 GAGCGCACACACAAGAACAA 59.623 50.000 11.47 0.00 0.00 2.83
3127 5095 1.583054 GGCCTAACTATTGCCACGAG 58.417 55.000 0.00 0.00 44.70 4.18
3128 5096 0.179094 CGGCCTAACTATTGCCACGA 60.179 55.000 0.00 0.00 45.63 4.35
3129 5097 0.461339 ACGGCCTAACTATTGCCACG 60.461 55.000 0.00 0.00 45.63 4.94
3131 5099 2.158871 CCTAACGGCCTAACTATTGCCA 60.159 50.000 0.00 0.00 45.63 4.92
3132 5100 2.490991 CCTAACGGCCTAACTATTGCC 58.509 52.381 0.00 0.00 41.85 4.52
3146 5114 1.683790 GCACACGCTACTGCCTAACG 61.684 60.000 0.00 0.00 35.36 3.18
3147 5115 1.683790 CGCACACGCTACTGCCTAAC 61.684 60.000 0.00 0.00 35.30 2.34
3149 5117 2.180769 CGCACACGCTACTGCCTA 59.819 61.111 0.00 0.00 35.30 3.93
3168 5136 2.580867 AACAGATCGAGCGAGCGC 60.581 61.111 6.78 6.78 42.33 5.92
3169 5137 2.226896 CCAACAGATCGAGCGAGCG 61.227 63.158 2.32 1.12 35.44 5.03
3170 5138 1.880340 CCCAACAGATCGAGCGAGC 60.880 63.158 0.00 0.00 0.00 5.03
3171 5139 0.526524 GACCCAACAGATCGAGCGAG 60.527 60.000 0.00 0.00 0.00 5.03
3172 5140 1.511305 GACCCAACAGATCGAGCGA 59.489 57.895 0.00 0.00 0.00 4.93
3173 5141 4.094684 GACCCAACAGATCGAGCG 57.905 61.111 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.