Multiple sequence alignment - TraesCS3B01G027800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G027800 chr3B 100.000 5735 0 0 397 6131 12091284 12085550 0.000000e+00 10591.0
1 TraesCS3B01G027800 chr3B 97.421 3141 73 6 2994 6131 27828100 27831235 0.000000e+00 5345.0
2 TraesCS3B01G027800 chr3B 97.976 2371 35 10 397 2760 27825736 27828100 0.000000e+00 4100.0
3 TraesCS3B01G027800 chr3B 90.721 1401 74 26 1851 3228 27831606 27832973 0.000000e+00 1816.0
4 TraesCS3B01G027800 chr3B 94.922 768 35 3 3691 4458 27851599 27852362 0.000000e+00 1199.0
5 TraesCS3B01G027800 chr3B 95.413 654 30 0 1130 1783 27822539 27823192 0.000000e+00 1042.0
6 TraesCS3B01G027800 chr3B 95.238 399 19 0 3294 3692 27833001 27833399 3.120000e-177 632.0
7 TraesCS3B01G027800 chr3B 93.640 283 17 1 5386 5668 730681818 730682099 7.350000e-114 422.0
8 TraesCS3B01G027800 chr3B 100.000 163 0 0 1 163 12091680 12091518 9.990000e-78 302.0
9 TraesCS3B01G027800 chr3B 94.512 164 5 2 1 163 27825508 27825668 3.670000e-62 250.0
10 TraesCS3B01G027800 chr3B 92.169 166 13 0 5223 5388 27852358 27852523 1.030000e-57 235.0
11 TraesCS3B01G027800 chr3B 89.888 178 14 3 5668 5843 27852519 27852694 6.180000e-55 226.0
12 TraesCS3B01G027800 chr3B 86.250 160 20 2 5840 5997 823524752 823524593 8.170000e-39 172.0
13 TraesCS3B01G027800 chr3D 93.378 3458 188 22 1962 5388 5736316 5732869 0.000000e+00 5079.0
14 TraesCS3B01G027800 chr3D 91.322 1452 96 17 419 1855 5737778 5736342 0.000000e+00 1956.0
15 TraesCS3B01G027800 chr3D 84.016 2027 292 17 3231 5236 5792449 5794464 0.000000e+00 1919.0
16 TraesCS3B01G027800 chr3D 90.289 484 43 3 885 1367 5790505 5790985 1.120000e-176 630.0
17 TraesCS3B01G027800 chr3D 91.333 300 25 1 5386 5685 93478155 93477857 5.720000e-110 409.0
18 TraesCS3B01G027800 chr3D 89.595 173 6 6 1 163 5750061 5749891 6.230000e-50 209.0
19 TraesCS3B01G027800 chr3D 85.987 157 18 3 5844 5997 451200098 451200253 1.370000e-36 165.0
20 TraesCS3B01G027800 chr3A 96.727 1772 56 1 3294 5063 15464567 15466338 0.000000e+00 2950.0
21 TraesCS3B01G027800 chr3A 85.147 1838 253 12 3380 5210 12163193 12165017 0.000000e+00 1864.0
22 TraesCS3B01G027800 chr3A 91.955 1156 65 15 1831 2965 15463172 15464320 0.000000e+00 1594.0
23 TraesCS3B01G027800 chr3A 91.705 1085 68 5 738 1812 15462119 15463191 0.000000e+00 1485.0
24 TraesCS3B01G027800 chr3A 89.792 480 46 2 888 1367 12160732 12161208 4.060000e-171 612.0
25 TraesCS3B01G027800 chr3A 95.796 333 14 0 5056 5388 15467400 15467732 6.990000e-149 538.0
26 TraesCS3B01G027800 chr3A 93.548 248 15 1 3001 3248 15464320 15464566 9.710000e-98 368.0
27 TraesCS3B01G027800 chr3A 94.318 176 8 2 5668 5843 15467728 15467901 1.010000e-67 268.0
28 TraesCS3B01G027800 chr3A 89.119 193 16 3 397 585 15461689 15461880 1.030000e-57 235.0
29 TraesCS3B01G027800 chrUn 84.458 2001 276 18 3269 5247 28821639 28819652 0.000000e+00 1940.0
30 TraesCS3B01G027800 chrUn 93.640 283 18 0 5386 5668 295156363 295156645 2.040000e-114 424.0
31 TraesCS3B01G027800 chrUn 93.357 286 19 0 5386 5671 305126544 305126259 2.040000e-114 424.0
32 TraesCS3B01G027800 chrUn 93.571 280 18 0 5386 5665 211090762 211091041 9.500000e-113 418.0
33 TraesCS3B01G027800 chr1B 82.786 1615 262 10 3630 5241 590523541 590521940 0.000000e+00 1428.0
34 TraesCS3B01G027800 chr1B 82.335 1319 216 12 3932 5247 590647128 590645824 0.000000e+00 1129.0
35 TraesCS3B01G027800 chr1B 82.183 1319 218 12 3932 5247 590666890 590665586 0.000000e+00 1118.0
36 TraesCS3B01G027800 chr1B 81.728 903 148 12 4348 5247 590639801 590638913 0.000000e+00 737.0
37 TraesCS3B01G027800 chr1B 82.353 663 95 10 3269 3910 590649930 590649269 1.930000e-154 556.0
38 TraesCS3B01G027800 chr4B 92.881 295 20 1 5378 5671 4525787 4526081 1.580000e-115 427.0
39 TraesCS3B01G027800 chr5B 93.031 287 20 0 5386 5672 153901374 153901660 2.640000e-113 420.0
40 TraesCS3B01G027800 chr5B 88.256 281 26 4 5852 6131 28091019 28091293 4.580000e-86 329.0
41 TraesCS3B01G027800 chr7D 93.310 284 18 1 5386 5668 573989784 573990067 9.500000e-113 418.0
42 TraesCS3B01G027800 chr7D 90.123 162 10 4 4 163 42153239 42153082 8.060000e-49 206.0
43 TraesCS3B01G027800 chr6D 85.908 369 52 0 1000 1368 300330454 300330086 1.600000e-105 394.0
44 TraesCS3B01G027800 chr6B 85.908 369 52 0 1000 1368 465151651 465151283 1.600000e-105 394.0
45 TraesCS3B01G027800 chr6A 84.615 403 55 6 1000 1399 417442716 417443114 1.600000e-105 394.0
46 TraesCS3B01G027800 chr7B 85.465 172 22 3 5841 6010 591610405 591610575 6.320000e-40 176.0
47 TraesCS3B01G027800 chr7B 86.538 156 20 1 5843 5997 11634191 11634346 2.940000e-38 171.0
48 TraesCS3B01G027800 chr2B 84.270 178 18 8 5844 6016 169855641 169855469 1.370000e-36 165.0
49 TraesCS3B01G027800 chr2B 85.093 161 21 3 5839 5997 723353703 723353544 1.770000e-35 161.0
50 TraesCS3B01G027800 chr2B 97.826 46 1 0 6069 6114 169855395 169855350 5.090000e-11 80.5
51 TraesCS3B01G027800 chr5D 85.443 158 20 3 5841 5997 424622529 424622374 1.770000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G027800 chr3B 12085550 12091680 6130 True 5446.500000 10591 100.000000 1 6131 2 chr3B.!!$R2 6130
1 TraesCS3B01G027800 chr3B 27822539 27833399 10860 False 2197.500000 5345 95.213500 1 6131 6 chr3B.!!$F2 6130
2 TraesCS3B01G027800 chr3B 27851599 27852694 1095 False 553.333333 1199 92.326333 3691 5843 3 chr3B.!!$F3 2152
3 TraesCS3B01G027800 chr3D 5732869 5737778 4909 True 3517.500000 5079 92.350000 419 5388 2 chr3D.!!$R3 4969
4 TraesCS3B01G027800 chr3D 5790505 5794464 3959 False 1274.500000 1919 87.152500 885 5236 2 chr3D.!!$F2 4351
5 TraesCS3B01G027800 chr3A 12160732 12165017 4285 False 1238.000000 1864 87.469500 888 5210 2 chr3A.!!$F1 4322
6 TraesCS3B01G027800 chr3A 15461689 15467901 6212 False 1062.571429 2950 93.309714 397 5843 7 chr3A.!!$F2 5446
7 TraesCS3B01G027800 chrUn 28819652 28821639 1987 True 1940.000000 1940 84.458000 3269 5247 1 chrUn.!!$R1 1978
8 TraesCS3B01G027800 chr1B 590521940 590523541 1601 True 1428.000000 1428 82.786000 3630 5241 1 chr1B.!!$R1 1611
9 TraesCS3B01G027800 chr1B 590665586 590666890 1304 True 1118.000000 1118 82.183000 3932 5247 1 chr1B.!!$R3 1315
10 TraesCS3B01G027800 chr1B 590645824 590649930 4106 True 842.500000 1129 82.344000 3269 5247 2 chr1B.!!$R4 1978
11 TraesCS3B01G027800 chr1B 590638913 590639801 888 True 737.000000 737 81.728000 4348 5247 1 chr1B.!!$R2 899

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
128 3098 1.488705 AATCCGGCTGGTTGGTGAGA 61.489 55.0 12.43 0.0 36.30 3.27 F
1018 4141 2.172483 AATGGCGAGCAACGGACTCT 62.172 55.0 5.57 0.0 42.83 3.24 F
2775 6315 0.250295 CAACGGGAACTCTCAGCCAA 60.250 55.0 0.00 0.0 0.00 4.52 F
3657 7505 0.739462 TCCCACTTGCTTACATCGCG 60.739 55.0 0.00 0.0 0.00 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1250 4373 2.060980 GCCACGGAGTCCAGGATCT 61.061 63.158 19.34 0.00 41.61 2.75 R
2879 6419 1.271543 TGCTCTAGGTGCATGCAAACT 60.272 47.619 24.58 24.38 35.31 2.66 R
3942 9909 0.400213 TCGAGCCAGGGTGATGTTTT 59.600 50.000 0.00 0.00 0.00 2.43 R
5376 12416 2.493278 CCAAACAGGGCCTGAATTAGTG 59.507 50.000 38.99 23.11 35.18 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 3001 2.176798 AGGACTTGGGGTTGATGTTTCA 59.823 45.455 0.00 0.00 0.00 2.69
45 3015 7.491048 GGTTGATGTTTCAATTGTTGTTACAGT 59.509 33.333 5.13 0.00 43.49 3.55
52 3022 6.986904 TCAATTGTTGTTACAGTGTGTGTA 57.013 33.333 5.88 0.00 40.94 2.90
106 3076 6.289834 TGAAAGTTTACTATTTGACCGGACA 58.710 36.000 9.46 5.04 0.00 4.02
107 3077 6.203338 TGAAAGTTTACTATTTGACCGGACAC 59.797 38.462 9.46 0.00 0.00 3.67
108 3078 5.217978 AGTTTACTATTTGACCGGACACA 57.782 39.130 9.46 0.21 0.00 3.72
128 3098 1.488705 AATCCGGCTGGTTGGTGAGA 61.489 55.000 12.43 0.00 36.30 3.27
467 3441 3.354948 TGAGCTACAGACCGGTTAGTA 57.645 47.619 9.42 13.99 0.00 1.82
476 3450 4.174009 CAGACCGGTTAGTAATGACACAG 58.826 47.826 9.42 0.00 0.00 3.66
886 3988 3.781760 GTGACGTACCTCACCCCA 58.218 61.111 12.45 0.00 35.44 4.96
1014 4137 3.430862 GCAATGGCGAGCAACGGA 61.431 61.111 5.57 0.00 42.83 4.69
1018 4141 2.172483 AATGGCGAGCAACGGACTCT 62.172 55.000 5.57 0.00 42.83 3.24
1250 4373 2.265739 CAAGGCCTGCAGCGAGTA 59.734 61.111 5.69 0.00 45.17 2.59
1386 4509 4.844655 AGGTACAAGTCACCTCCTACAAAT 59.155 41.667 0.00 0.00 43.04 2.32
1732 5186 7.088589 TCAAATAAGCAAAAGGTCTATCAGC 57.911 36.000 0.00 0.00 0.00 4.26
1968 5446 8.995027 ATTTATGTGGGTTATGTGTACATCAT 57.005 30.769 0.00 7.44 37.76 2.45
2010 5491 4.934075 CCGCATAATGTGGTATGATGAG 57.066 45.455 0.00 0.00 42.85 2.90
2598 6101 3.016736 GGTAAACAGTATGCCAGCACAT 58.983 45.455 0.00 0.00 42.53 3.21
2759 6290 7.010923 TGGTGCTTGTAAAATTTCATTGTCAAC 59.989 33.333 0.00 0.00 0.00 3.18
2764 6304 6.806751 TGTAAAATTTCATTGTCAACGGGAA 58.193 32.000 0.00 0.00 0.00 3.97
2774 6314 1.118965 TCAACGGGAACTCTCAGCCA 61.119 55.000 0.00 0.00 0.00 4.75
2775 6315 0.250295 CAACGGGAACTCTCAGCCAA 60.250 55.000 0.00 0.00 0.00 4.52
2807 6347 6.076981 ACAGGTCTCAACATTGACATTTTC 57.923 37.500 0.00 0.00 35.11 2.29
2834 6374 8.663911 CAAAGTTTCTTTGACAGCCAAAATTTA 58.336 29.630 14.61 0.00 43.50 1.40
2878 6418 6.303054 TCCTAGATGTCATTTCACCACAAAA 58.697 36.000 0.00 0.00 0.00 2.44
2879 6419 6.775142 TCCTAGATGTCATTTCACCACAAAAA 59.225 34.615 0.00 0.00 0.00 1.94
2928 6468 5.766174 AGCATCTTTGATGCCAAATTGTTTT 59.234 32.000 23.59 3.99 45.59 2.43
2984 6525 1.803334 TTACTGTTCACATGCGGGAC 58.197 50.000 0.00 0.00 0.00 4.46
3463 7311 4.822685 ATATTTGGCATTGGAAGCAACA 57.177 36.364 0.00 0.00 0.00 3.33
3657 7505 0.739462 TCCCACTTGCTTACATCGCG 60.739 55.000 0.00 0.00 0.00 5.87
3801 7649 2.027285 GGGGCTTGCAATTGTAAATGGT 60.027 45.455 10.29 0.00 0.00 3.55
3942 9909 1.555075 GACCACCTGATCCACAAGCTA 59.445 52.381 0.00 0.00 0.00 3.32
4764 10731 2.091885 CACCAACTACCCCCTAATGCAT 60.092 50.000 0.00 0.00 0.00 3.96
5263 12300 6.741448 TTGTTTTTCATTTCGACGGAATTC 57.259 33.333 0.00 0.00 30.88 2.17
5376 12416 1.600916 GTCACACAACCCAGGAGCC 60.601 63.158 0.00 0.00 0.00 4.70
5412 12452 5.648092 CCCTGTTTGGTTCATAAGTCTTAGG 59.352 44.000 0.00 0.00 0.00 2.69
5462 12502 7.185856 AGTTATAAGTCCCCAAAAAGTCCCTAT 59.814 37.037 0.00 0.00 0.00 2.57
5475 12515 2.576648 AGTCCCTATCTGTTTGGTTCCC 59.423 50.000 0.00 0.00 0.00 3.97
5476 12516 1.557832 TCCCTATCTGTTTGGTTCCCG 59.442 52.381 0.00 0.00 0.00 5.14
5496 12536 4.384868 CCCGGGACTTAACATGGACTAAAT 60.385 45.833 18.48 0.00 0.00 1.40
5535 12575 8.962205 ACTATAAGTCCCTATAAGACTCTCCTT 58.038 37.037 5.74 0.00 43.77 3.36
5574 12614 7.703058 ATAAGTCCCAAATGTCCACTTTAAG 57.297 36.000 0.00 0.00 0.00 1.85
5584 12624 8.893727 CAAATGTCCACTTTAAGTCCCTATAAG 58.106 37.037 0.00 0.00 0.00 1.73
5591 12631 7.273712 CACTTTAAGTCCCTATAAGTCCCTTC 58.726 42.308 0.00 0.00 0.00 3.46
5606 12646 5.316987 AGTCCCTTCTGTTTGGTTTAGATG 58.683 41.667 0.00 0.00 0.00 2.90
5616 12656 7.447238 TCTGTTTGGTTTAGATGGGACTTAAAG 59.553 37.037 0.00 0.00 0.00 1.85
5684 12724 2.576191 CCTCTCAGGGGTATCCAAAACA 59.424 50.000 0.00 0.00 38.24 2.83
5687 12727 4.662278 TCTCAGGGGTATCCAAAACAAAG 58.338 43.478 0.00 0.00 38.24 2.77
5898 12942 2.169330 GGTCCAGATCGTCCTATACCC 58.831 57.143 0.00 0.00 0.00 3.69
6004 13048 3.522808 GGCGACGTACATCCTCCT 58.477 61.111 0.00 0.00 0.00 3.69
6009 13053 2.279517 CGTACATCCTCCTGCGGC 60.280 66.667 0.00 0.00 0.00 6.53
6015 13059 2.491022 ATCCTCCTGCGGCGTAGAC 61.491 63.158 26.61 0.15 0.00 2.59
6108 13152 1.885388 TGGTCAAAGTGCGTCGGTG 60.885 57.895 0.00 0.00 0.00 4.94
6113 13157 1.153329 AAAGTGCGTCGGTGGTCAA 60.153 52.632 0.00 0.00 0.00 3.18
6114 13158 0.534203 AAAGTGCGTCGGTGGTCAAT 60.534 50.000 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.763057 ACCCCAAGTCCTCAAATTACAC 58.237 45.455 0.00 0.00 0.00 2.90
2 3 4.403734 TCAACCCCAAGTCCTCAAATTAC 58.596 43.478 0.00 0.00 0.00 1.89
3 4 4.733077 TCAACCCCAAGTCCTCAAATTA 57.267 40.909 0.00 0.00 0.00 1.40
4 5 3.611025 TCAACCCCAAGTCCTCAAATT 57.389 42.857 0.00 0.00 0.00 1.82
19 2989 7.491048 ACTGTAACAACAATTGAAACATCAACC 59.509 33.333 13.59 0.00 31.90 3.77
45 3015 5.304357 ACATCCATCGGAGAATATACACACA 59.696 40.000 0.00 0.00 43.58 3.72
52 3022 9.745018 ATAATGAAAACATCCATCGGAGAATAT 57.255 29.630 0.00 0.00 43.58 1.28
106 3076 1.152830 ACCAACCAGCCGGATTTGT 59.847 52.632 5.05 0.00 35.59 2.83
107 3077 0.893270 TCACCAACCAGCCGGATTTG 60.893 55.000 5.05 0.05 35.59 2.32
108 3078 0.609131 CTCACCAACCAGCCGGATTT 60.609 55.000 5.05 0.00 35.59 2.17
444 3416 0.542232 AACCGGTCTGTAGCTCAGGT 60.542 55.000 8.04 1.58 43.76 4.00
467 3441 3.617531 GCACTACTACAGGCTGTGTCATT 60.618 47.826 29.65 11.28 40.94 2.57
476 3450 1.808133 GCTCATGGCACTACTACAGGC 60.808 57.143 0.00 0.00 41.35 4.85
534 3510 8.863872 AGCAGAATACTATAGTGGTTTTTGTT 57.136 30.769 15.90 7.21 0.00 2.83
659 3635 4.020573 TCTCGGAGCAAACCAGAGATTTAA 60.021 41.667 0.00 0.00 35.99 1.52
886 3988 9.236006 GATGTGATGCTTAAATAATGGTAGGAT 57.764 33.333 0.00 0.00 0.00 3.24
1018 4141 3.755628 CGGGTCCTTCTCGGCGAA 61.756 66.667 12.13 0.00 36.23 4.70
1250 4373 2.060980 GCCACGGAGTCCAGGATCT 61.061 63.158 19.34 0.00 41.61 2.75
1386 4509 4.377328 CGTTGAGATGTCGAGATGCAAAAA 60.377 41.667 0.00 0.00 0.00 1.94
1706 5160 7.486232 GCTGATAGACCTTTTGCTTATTTGAAC 59.514 37.037 0.00 0.00 0.00 3.18
1968 5446 5.008613 GCGGATGCAGAAGAAAAATACCATA 59.991 40.000 0.00 0.00 42.15 2.74
2516 6017 4.517285 ACTACATGTTGCCCAACTATGAG 58.483 43.478 20.17 16.35 41.67 2.90
2728 6259 7.179376 AATGAAATTTTACAAGCACCAAGCGT 61.179 34.615 0.00 0.00 41.01 5.07
2759 6290 1.604604 TTTTTGGCTGAGAGTTCCCG 58.395 50.000 0.00 0.00 0.00 5.14
2800 6340 6.313658 GCTGTCAAAGAAACTTTGGAAAATGT 59.686 34.615 19.43 0.00 0.00 2.71
2807 6347 3.799281 TGGCTGTCAAAGAAACTTTGG 57.201 42.857 19.43 8.68 0.00 3.28
2878 6418 1.815003 GCTCTAGGTGCATGCAAACTT 59.185 47.619 24.58 10.18 0.00 2.66
2879 6419 1.271543 TGCTCTAGGTGCATGCAAACT 60.272 47.619 24.58 24.38 35.31 2.66
2956 6497 6.688385 CCGCATGTGAACAGTAAATTCATAAG 59.312 38.462 8.11 0.00 38.31 1.73
3463 7311 1.220206 CCTCTGATGGCAGCTCGTT 59.780 57.895 3.69 0.00 42.01 3.85
3732 7580 1.276421 CCATCTATCCCGGCGATCTTT 59.724 52.381 9.30 0.00 31.92 2.52
3801 7649 4.382320 GCAGAACCCACCGCCGTA 62.382 66.667 0.00 0.00 0.00 4.02
3942 9909 0.400213 TCGAGCCAGGGTGATGTTTT 59.600 50.000 0.00 0.00 0.00 2.43
5263 12300 8.879759 ACACTTGTTACAAAATGATAGGATACG 58.120 33.333 13.72 0.00 46.39 3.06
5376 12416 2.493278 CCAAACAGGGCCTGAATTAGTG 59.507 50.000 38.99 23.11 35.18 2.74
5475 12515 5.293569 GTCATTTAGTCCATGTTAAGTCCCG 59.706 44.000 0.00 0.00 0.00 5.14
5476 12516 5.589050 GGTCATTTAGTCCATGTTAAGTCCC 59.411 44.000 0.00 0.00 0.00 4.46
5496 12536 8.792830 AGGGACTTATAGTTGTAATATGGTCA 57.207 34.615 0.00 0.00 27.25 4.02
5507 12547 9.016438 GGAGAGTCTTATAGGGACTTATAGTTG 57.984 40.741 10.43 0.00 43.13 3.16
5508 12548 8.962205 AGGAGAGTCTTATAGGGACTTATAGTT 58.038 37.037 10.43 0.00 43.13 2.24
5564 12604 5.664457 GGGACTTATAGGGACTTAAAGTGGA 59.336 44.000 0.00 0.00 40.60 4.02
5584 12624 4.459337 CCATCTAAACCAAACAGAAGGGAC 59.541 45.833 0.00 0.00 0.00 4.46
5591 12631 7.309194 CCTTTAAGTCCCATCTAAACCAAACAG 60.309 40.741 0.00 0.00 0.00 3.16
5606 12646 7.592885 ACTTTAAAAAGTCCCTTTAAGTCCC 57.407 36.000 2.24 0.00 45.65 4.46
5626 12666 4.018688 GGGACTTATTGGTGTAGGGACTTT 60.019 45.833 0.00 0.00 41.75 2.66
5854 12896 2.835764 TGATGTGTCTAGGGGTTGTACC 59.164 50.000 0.00 0.00 37.60 3.34
5856 12898 3.056393 CGTTGATGTGTCTAGGGGTTGTA 60.056 47.826 0.00 0.00 0.00 2.41
5857 12899 2.289444 CGTTGATGTGTCTAGGGGTTGT 60.289 50.000 0.00 0.00 0.00 3.32
5858 12900 2.346803 CGTTGATGTGTCTAGGGGTTG 58.653 52.381 0.00 0.00 0.00 3.77
5859 12901 1.278127 CCGTTGATGTGTCTAGGGGTT 59.722 52.381 0.00 0.00 33.40 4.11
5898 12942 5.918576 CCTTGTTTAAGTTTTTAGGCGAAGG 59.081 40.000 0.00 0.00 31.80 3.46
5981 13025 1.585521 GATGTACGTCGCCGGTCTG 60.586 63.158 1.90 0.00 38.78 3.51
5982 13026 2.768492 GGATGTACGTCGCCGGTCT 61.768 63.158 1.90 0.00 38.78 3.85
5984 13028 2.753043 AGGATGTACGTCGCCGGT 60.753 61.111 1.90 0.00 38.78 5.28
5986 13030 2.025727 GGAGGATGTACGTCGCCG 59.974 66.667 8.96 0.00 40.83 6.46
6030 13074 2.504032 GCCACCTATGCCAGCGTA 59.496 61.111 0.00 0.00 0.00 4.42
6031 13075 4.838152 CGCCACCTATGCCAGCGT 62.838 66.667 0.00 0.00 41.78 5.07
6033 13077 3.995506 AACCGCCACCTATGCCAGC 62.996 63.158 0.00 0.00 0.00 4.85
6034 13078 1.376609 GAAACCGCCACCTATGCCAG 61.377 60.000 0.00 0.00 0.00 4.85
6035 13079 1.377987 GAAACCGCCACCTATGCCA 60.378 57.895 0.00 0.00 0.00 4.92
6036 13080 0.679960 AAGAAACCGCCACCTATGCC 60.680 55.000 0.00 0.00 0.00 4.40
6037 13081 1.173913 AAAGAAACCGCCACCTATGC 58.826 50.000 0.00 0.00 0.00 3.14
6038 13082 3.181514 CGTAAAAGAAACCGCCACCTATG 60.182 47.826 0.00 0.00 0.00 2.23
6040 13084 2.415776 CGTAAAAGAAACCGCCACCTA 58.584 47.619 0.00 0.00 0.00 3.08
6042 13086 0.386352 GCGTAAAAGAAACCGCCACC 60.386 55.000 0.00 0.00 40.25 4.61
6043 13087 0.589708 AGCGTAAAAGAAACCGCCAC 59.410 50.000 0.00 0.00 46.85 5.01
6044 13088 0.589223 CAGCGTAAAAGAAACCGCCA 59.411 50.000 0.00 0.00 46.85 5.69
6082 13126 2.660552 ACTTTGACCACCGACGCG 60.661 61.111 3.53 3.53 0.00 6.01
6088 13132 2.604174 CCGACGCACTTTGACCACC 61.604 63.158 0.00 0.00 0.00 4.61
6108 13152 0.655733 CCAACCGACGCATATTGACC 59.344 55.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.