Multiple sequence alignment - TraesCS3B01G026400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G026400 chr3B 100.000 3089 0 0 1 3089 11468580 11471668 0.000000e+00 5705.0
1 TraesCS3B01G026400 chr3B 95.288 1252 57 2 889 2139 31983164 31984414 0.000000e+00 1984.0
2 TraesCS3B01G026400 chr3B 88.205 585 69 0 1505 2089 11114282 11113698 0.000000e+00 699.0
3 TraesCS3B01G026400 chr3B 89.956 458 30 3 2611 3068 31984974 31985415 7.430000e-161 577.0
4 TraesCS3B01G026400 chr3B 90.443 429 39 2 2188 2614 31984516 31984944 5.780000e-157 564.0
5 TraesCS3B01G026400 chr3D 94.737 1254 59 6 889 2136 9121882 9123134 0.000000e+00 1943.0
6 TraesCS3B01G026400 chr3D 88.189 889 69 12 2188 3041 9123223 9124110 0.000000e+00 1027.0
7 TraesCS3B01G026400 chr3D 87.692 585 66 2 1505 2089 9066965 9066387 0.000000e+00 676.0
8 TraesCS3B01G026400 chr3D 80.952 84 14 2 2865 2947 9111461 9111543 7.150000e-07 65.8
9 TraesCS3B01G026400 chr3A 85.013 1161 136 23 968 2107 11873334 11872191 0.000000e+00 1146.0
10 TraesCS3B01G026400 chr3A 90.698 817 73 3 2253 3068 11871987 11871173 0.000000e+00 1085.0
11 TraesCS3B01G026400 chr3A 89.116 588 64 0 1502 2089 12117724 12117137 0.000000e+00 732.0
12 TraesCS3B01G026400 chr3A 87.124 598 66 8 1502 2089 11921129 11921725 0.000000e+00 667.0
13 TraesCS3B01G026400 chr3A 83.190 464 54 9 825 1279 11920479 11920927 1.330000e-108 403.0
14 TraesCS3B01G026400 chr3A 88.000 175 17 2 963 1133 11933207 11933381 1.450000e-48 204.0
15 TraesCS3B01G026400 chr3A 97.500 40 1 0 2190 2229 11872073 11872034 5.530000e-08 69.4
16 TraesCS3B01G026400 chr3A 92.105 38 3 0 2865 2902 11876407 11876370 2.000000e-03 54.7
17 TraesCS3B01G026400 chr7B 87.437 597 47 16 2480 3068 62677047 62677623 0.000000e+00 662.0
18 TraesCS3B01G026400 chr7B 82.803 157 25 2 1021 1176 690904484 690904639 4.150000e-29 139.0
19 TraesCS3B01G026400 chr2B 84.667 150 23 0 1034 1183 763449611 763449462 1.920000e-32 150.0
20 TraesCS3B01G026400 chr2B 83.333 150 25 0 1032 1181 762957759 762957610 4.150000e-29 139.0
21 TraesCS3B01G026400 chr2B 96.970 33 0 1 1729 1761 693072248 693072217 2.000000e-03 54.7
22 TraesCS3B01G026400 chr2D 82.432 148 26 0 1039 1186 621590002 621589855 2.500000e-26 130.0
23 TraesCS3B01G026400 chr2D 100.000 28 0 0 1 28 25680750 25680777 6.000000e-03 52.8
24 TraesCS3B01G026400 chr2A 100.000 29 0 0 3060 3088 29728626 29728598 2.000000e-03 54.7
25 TraesCS3B01G026400 chr6B 100.000 28 0 0 3061 3088 658709928 658709901 6.000000e-03 52.8
26 TraesCS3B01G026400 chr5D 100.000 28 0 0 3062 3089 537220276 537220249 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G026400 chr3B 11468580 11471668 3088 False 5705.000000 5705 100.000000 1 3089 1 chr3B.!!$F1 3088
1 TraesCS3B01G026400 chr3B 31983164 31985415 2251 False 1041.666667 1984 91.895667 889 3068 3 chr3B.!!$F2 2179
2 TraesCS3B01G026400 chr3B 11113698 11114282 584 True 699.000000 699 88.205000 1505 2089 1 chr3B.!!$R1 584
3 TraesCS3B01G026400 chr3D 9121882 9124110 2228 False 1485.000000 1943 91.463000 889 3041 2 chr3D.!!$F2 2152
4 TraesCS3B01G026400 chr3D 9066387 9066965 578 True 676.000000 676 87.692000 1505 2089 1 chr3D.!!$R1 584
5 TraesCS3B01G026400 chr3A 12117137 12117724 587 True 732.000000 732 89.116000 1502 2089 1 chr3A.!!$R1 587
6 TraesCS3B01G026400 chr3A 11871173 11876407 5234 True 588.775000 1146 91.329000 968 3068 4 chr3A.!!$R2 2100
7 TraesCS3B01G026400 chr3A 11920479 11921725 1246 False 535.000000 667 85.157000 825 2089 2 chr3A.!!$F2 1264
8 TraesCS3B01G026400 chr7B 62677047 62677623 576 False 662.000000 662 87.437000 2480 3068 1 chr7B.!!$F1 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
498 499 0.041238 TGAACTGATCGTCCCCCTCT 59.959 55.0 0.00 0.0 0.00 3.69 F
501 502 0.106116 ACTGATCGTCCCCCTCTACC 60.106 60.0 0.00 0.0 0.00 3.18 F
502 503 0.106167 CTGATCGTCCCCCTCTACCA 60.106 60.0 0.00 0.0 0.00 3.25 F
827 828 0.178935 AGGGGTTCCAAATGTGGTGG 60.179 55.0 0.65 0.0 46.11 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1483 3643 0.249447 TCGATATGTGAAGCGGCCAG 60.249 55.000 2.24 0.0 0.00 4.85 R
1491 3651 0.529773 GCGGCACCTCGATATGTGAA 60.530 55.000 12.45 0.0 34.37 3.18 R
1492 3652 1.067416 GCGGCACCTCGATATGTGA 59.933 57.895 12.45 0.0 34.37 3.58 R
2654 4983 1.405661 GGAAAACCAACAAAACCGCCA 60.406 47.619 0.00 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.442076 ACTCCCTCCGATCCATATTACC 58.558 50.000 0.00 0.00 0.00 2.85
22 23 3.077695 ACTCCCTCCGATCCATATTACCT 59.922 47.826 0.00 0.00 0.00 3.08
23 24 3.441101 TCCCTCCGATCCATATTACCTG 58.559 50.000 0.00 0.00 0.00 4.00
27 28 3.997021 CTCCGATCCATATTACCTGTTGC 59.003 47.826 0.00 0.00 0.00 4.17
28 29 3.389656 TCCGATCCATATTACCTGTTGCA 59.610 43.478 0.00 0.00 0.00 4.08
29 30 4.041567 TCCGATCCATATTACCTGTTGCAT 59.958 41.667 0.00 0.00 0.00 3.96
30 31 4.393062 CCGATCCATATTACCTGTTGCATC 59.607 45.833 0.00 0.00 0.00 3.91
31 32 5.240891 CGATCCATATTACCTGTTGCATCT 58.759 41.667 0.00 0.00 0.00 2.90
32 33 5.702670 CGATCCATATTACCTGTTGCATCTT 59.297 40.000 0.00 0.00 0.00 2.40
33 34 6.205464 CGATCCATATTACCTGTTGCATCTTT 59.795 38.462 0.00 0.00 0.00 2.52
34 35 7.387673 CGATCCATATTACCTGTTGCATCTTTA 59.612 37.037 0.00 0.00 0.00 1.85
36 37 7.573710 TCCATATTACCTGTTGCATCTTTAGT 58.426 34.615 0.00 0.00 0.00 2.24
38 39 8.774586 CCATATTACCTGTTGCATCTTTAGTAC 58.225 37.037 0.00 0.00 0.00 2.73
39 40 9.325198 CATATTACCTGTTGCATCTTTAGTACA 57.675 33.333 0.00 0.00 0.00 2.90
40 41 9.899661 ATATTACCTGTTGCATCTTTAGTACAA 57.100 29.630 0.00 0.00 0.00 2.41
42 43 6.500684 ACCTGTTGCATCTTTAGTACAATG 57.499 37.500 0.00 0.00 0.00 2.82
43 44 6.003950 ACCTGTTGCATCTTTAGTACAATGT 58.996 36.000 0.00 0.00 0.00 2.71
44 45 7.165485 ACCTGTTGCATCTTTAGTACAATGTA 58.835 34.615 0.00 0.00 0.00 2.29
45 46 7.334421 ACCTGTTGCATCTTTAGTACAATGTAG 59.666 37.037 0.00 0.00 0.00 2.74
46 47 7.334421 CCTGTTGCATCTTTAGTACAATGTAGT 59.666 37.037 5.99 5.99 0.00 2.73
47 48 9.366216 CTGTTGCATCTTTAGTACAATGTAGTA 57.634 33.333 3.97 3.97 0.00 1.82
48 49 9.713713 TGTTGCATCTTTAGTACAATGTAGTAA 57.286 29.630 14.71 14.71 0.00 2.24
60 61 9.424319 AGTACAATGTAGTAAAGATGTGACAAG 57.576 33.333 0.00 0.00 0.00 3.16
61 62 7.133891 ACAATGTAGTAAAGATGTGACAAGC 57.866 36.000 0.00 0.00 0.00 4.01
62 63 6.710295 ACAATGTAGTAAAGATGTGACAAGCA 59.290 34.615 0.00 0.00 0.00 3.91
63 64 7.228507 ACAATGTAGTAAAGATGTGACAAGCAA 59.771 33.333 0.00 0.00 0.00 3.91
64 65 7.928307 ATGTAGTAAAGATGTGACAAGCAAT 57.072 32.000 0.00 0.00 0.00 3.56
66 67 9.618890 ATGTAGTAAAGATGTGACAAGCAATAT 57.381 29.630 0.00 0.00 0.00 1.28
67 68 8.882736 TGTAGTAAAGATGTGACAAGCAATATG 58.117 33.333 0.00 0.00 0.00 1.78
68 69 7.325660 AGTAAAGATGTGACAAGCAATATGG 57.674 36.000 0.00 0.00 0.00 2.74
69 70 7.112122 AGTAAAGATGTGACAAGCAATATGGA 58.888 34.615 0.00 0.00 0.00 3.41
70 71 7.776969 AGTAAAGATGTGACAAGCAATATGGAT 59.223 33.333 0.00 0.00 0.00 3.41
72 73 7.741027 AAGATGTGACAAGCAATATGGATAG 57.259 36.000 0.00 0.00 0.00 2.08
73 74 6.236409 AGATGTGACAAGCAATATGGATAGG 58.764 40.000 0.00 0.00 0.00 2.57
76 77 4.999950 GTGACAAGCAATATGGATAGGAGG 59.000 45.833 0.00 0.00 0.00 4.30
77 78 4.042062 TGACAAGCAATATGGATAGGAGGG 59.958 45.833 0.00 0.00 0.00 4.30
80 81 4.153371 AGCAATATGGATAGGAGGGAGT 57.847 45.455 0.00 0.00 0.00 3.85
81 82 5.291100 AGCAATATGGATAGGAGGGAGTA 57.709 43.478 0.00 0.00 0.00 2.59
82 83 5.026790 AGCAATATGGATAGGAGGGAGTAC 58.973 45.833 0.00 0.00 0.00 2.73
83 84 5.026790 GCAATATGGATAGGAGGGAGTACT 58.973 45.833 0.00 0.00 0.00 2.73
84 85 6.010650 AGCAATATGGATAGGAGGGAGTACTA 60.011 42.308 0.00 0.00 0.00 1.82
85 86 6.668283 GCAATATGGATAGGAGGGAGTACTAA 59.332 42.308 0.00 0.00 0.00 2.24
87 88 9.273137 CAATATGGATAGGAGGGAGTACTAAAT 57.727 37.037 0.00 0.00 0.00 1.40
89 90 9.860393 ATATGGATAGGAGGGAGTACTAAATTT 57.140 33.333 0.00 0.00 0.00 1.82
90 91 7.374975 TGGATAGGAGGGAGTACTAAATTTG 57.625 40.000 0.00 0.00 0.00 2.32
93 94 5.695424 AGGAGGGAGTACTAAATTTGGTC 57.305 43.478 10.79 3.61 0.00 4.02
95 96 5.189934 AGGAGGGAGTACTAAATTTGGTCAG 59.810 44.000 10.79 0.00 0.00 3.51
96 97 5.189145 GGAGGGAGTACTAAATTTGGTCAGA 59.811 44.000 10.79 0.00 0.00 3.27
97 98 6.296259 GGAGGGAGTACTAAATTTGGTCAGAA 60.296 42.308 10.79 0.00 0.00 3.02
98 99 7.086685 AGGGAGTACTAAATTTGGTCAGAAA 57.913 36.000 10.79 0.00 0.00 2.52
99 100 7.523415 AGGGAGTACTAAATTTGGTCAGAAAA 58.477 34.615 10.79 0.00 0.00 2.29
100 101 8.002459 AGGGAGTACTAAATTTGGTCAGAAAAA 58.998 33.333 10.79 0.00 0.00 1.94
148 149 8.640063 GGTAGTTTAATTTTTACCCTCTTGGA 57.360 34.615 0.00 0.00 38.00 3.53
149 150 9.251440 GGTAGTTTAATTTTTACCCTCTTGGAT 57.749 33.333 0.00 0.00 38.00 3.41
151 152 7.611770 AGTTTAATTTTTACCCTCTTGGATGC 58.388 34.615 0.00 0.00 38.00 3.91
152 153 6.538945 TTAATTTTTACCCTCTTGGATGCC 57.461 37.500 0.00 0.00 38.00 4.40
154 155 1.377690 TTTACCCTCTTGGATGCCCA 58.622 50.000 0.00 0.00 41.64 5.36
162 163 4.863415 TGGATGCCCAAAAGGACC 57.137 55.556 0.00 0.00 40.09 4.46
166 167 0.811281 GATGCCCAAAAGGACCGAAG 59.189 55.000 0.00 0.00 38.24 3.79
167 168 0.404040 ATGCCCAAAAGGACCGAAGA 59.596 50.000 0.00 0.00 38.24 2.87
168 169 0.183971 TGCCCAAAAGGACCGAAGAA 59.816 50.000 0.00 0.00 38.24 2.52
169 170 1.324383 GCCCAAAAGGACCGAAGAAA 58.676 50.000 0.00 0.00 38.24 2.52
170 171 1.000607 GCCCAAAAGGACCGAAGAAAC 60.001 52.381 0.00 0.00 38.24 2.78
172 173 2.293399 CCCAAAAGGACCGAAGAAACTG 59.707 50.000 0.00 0.00 38.24 3.16
173 174 3.211045 CCAAAAGGACCGAAGAAACTGA 58.789 45.455 0.00 0.00 0.00 3.41
174 175 3.251004 CCAAAAGGACCGAAGAAACTGAG 59.749 47.826 0.00 0.00 0.00 3.35
175 176 4.127171 CAAAAGGACCGAAGAAACTGAGA 58.873 43.478 0.00 0.00 0.00 3.27
176 177 4.417426 AAAGGACCGAAGAAACTGAGAA 57.583 40.909 0.00 0.00 0.00 2.87
177 178 4.417426 AAGGACCGAAGAAACTGAGAAA 57.583 40.909 0.00 0.00 0.00 2.52
178 179 4.417426 AGGACCGAAGAAACTGAGAAAA 57.583 40.909 0.00 0.00 0.00 2.29
179 180 4.777463 AGGACCGAAGAAACTGAGAAAAA 58.223 39.130 0.00 0.00 0.00 1.94
180 181 4.575236 AGGACCGAAGAAACTGAGAAAAAC 59.425 41.667 0.00 0.00 0.00 2.43
181 182 4.261072 GGACCGAAGAAACTGAGAAAAACC 60.261 45.833 0.00 0.00 0.00 3.27
182 183 4.266714 ACCGAAGAAACTGAGAAAAACCA 58.733 39.130 0.00 0.00 0.00 3.67
184 185 5.359860 ACCGAAGAAACTGAGAAAAACCAAT 59.640 36.000 0.00 0.00 0.00 3.16
185 186 6.544564 ACCGAAGAAACTGAGAAAAACCAATA 59.455 34.615 0.00 0.00 0.00 1.90
186 187 7.067737 ACCGAAGAAACTGAGAAAAACCAATAA 59.932 33.333 0.00 0.00 0.00 1.40
187 188 7.378728 CCGAAGAAACTGAGAAAAACCAATAAC 59.621 37.037 0.00 0.00 0.00 1.89
189 190 6.206498 AGAAACTGAGAAAAACCAATAACGC 58.794 36.000 0.00 0.00 0.00 4.84
190 191 4.141855 ACTGAGAAAAACCAATAACGCG 57.858 40.909 3.53 3.53 0.00 6.01
191 192 2.908626 CTGAGAAAAACCAATAACGCGC 59.091 45.455 5.73 0.00 0.00 6.86
192 193 2.290916 TGAGAAAAACCAATAACGCGCA 59.709 40.909 5.73 0.00 0.00 6.09
193 194 3.243101 TGAGAAAAACCAATAACGCGCAA 60.243 39.130 5.73 0.00 0.00 4.85
194 195 3.047093 AGAAAAACCAATAACGCGCAAC 58.953 40.909 5.73 0.00 0.00 4.17
195 196 1.773410 AAAACCAATAACGCGCAACC 58.227 45.000 5.73 0.00 0.00 3.77
196 197 0.955905 AAACCAATAACGCGCAACCT 59.044 45.000 5.73 0.00 0.00 3.50
197 198 0.519961 AACCAATAACGCGCAACCTC 59.480 50.000 5.73 0.00 0.00 3.85
198 199 0.604243 ACCAATAACGCGCAACCTCA 60.604 50.000 5.73 0.00 0.00 3.86
199 200 0.519519 CCAATAACGCGCAACCTCAA 59.480 50.000 5.73 0.00 0.00 3.02
200 201 1.132262 CCAATAACGCGCAACCTCAAT 59.868 47.619 5.73 0.00 0.00 2.57
201 202 2.176369 CAATAACGCGCAACCTCAATG 58.824 47.619 5.73 0.00 0.00 2.82
202 203 0.098728 ATAACGCGCAACCTCAATGC 59.901 50.000 5.73 0.00 40.41 3.56
203 204 1.231296 TAACGCGCAACCTCAATGCA 61.231 50.000 5.73 0.00 44.01 3.96
204 205 1.865788 AACGCGCAACCTCAATGCAT 61.866 50.000 5.73 0.00 44.01 3.96
205 206 1.153978 CGCGCAACCTCAATGCATT 60.154 52.632 8.75 5.99 44.01 3.56
208 209 1.133025 GCGCAACCTCAATGCATTAGT 59.867 47.619 12.53 7.34 44.01 2.24
209 210 2.792542 GCGCAACCTCAATGCATTAGTC 60.793 50.000 12.53 0.00 44.01 2.59
210 211 2.223340 CGCAACCTCAATGCATTAGTCC 60.223 50.000 12.53 4.73 44.01 3.85
211 212 2.099756 GCAACCTCAATGCATTAGTCCC 59.900 50.000 12.53 1.93 43.29 4.46
212 213 3.355378 CAACCTCAATGCATTAGTCCCA 58.645 45.455 12.53 0.00 0.00 4.37
213 214 3.004752 ACCTCAATGCATTAGTCCCAC 57.995 47.619 12.53 0.00 0.00 4.61
215 216 3.245229 ACCTCAATGCATTAGTCCCACAA 60.245 43.478 12.53 0.00 0.00 3.33
216 217 3.129287 CCTCAATGCATTAGTCCCACAAC 59.871 47.826 12.53 0.00 0.00 3.32
220 221 1.173913 GCATTAGTCCCACAACCCAC 58.826 55.000 0.00 0.00 0.00 4.61
221 222 1.271926 GCATTAGTCCCACAACCCACT 60.272 52.381 0.00 0.00 0.00 4.00
222 223 2.026636 GCATTAGTCCCACAACCCACTA 60.027 50.000 0.00 0.00 0.00 2.74
223 224 3.606687 CATTAGTCCCACAACCCACTAC 58.393 50.000 0.00 0.00 0.00 2.73
224 225 2.708037 TAGTCCCACAACCCACTACT 57.292 50.000 0.00 0.00 0.00 2.57
225 226 1.349067 AGTCCCACAACCCACTACTC 58.651 55.000 0.00 0.00 0.00 2.59
226 227 1.053424 GTCCCACAACCCACTACTCA 58.947 55.000 0.00 0.00 0.00 3.41
229 230 1.420138 CCCACAACCCACTACTCAACT 59.580 52.381 0.00 0.00 0.00 3.16
231 232 3.071892 CCCACAACCCACTACTCAACTTA 59.928 47.826 0.00 0.00 0.00 2.24
232 233 4.315803 CCACAACCCACTACTCAACTTAG 58.684 47.826 0.00 0.00 0.00 2.18
234 235 4.989168 CACAACCCACTACTCAACTTAGAC 59.011 45.833 0.00 0.00 0.00 2.59
236 237 4.868314 ACCCACTACTCAACTTAGACAC 57.132 45.455 0.00 0.00 0.00 3.67
237 238 4.220724 ACCCACTACTCAACTTAGACACA 58.779 43.478 0.00 0.00 0.00 3.72
238 239 4.838986 ACCCACTACTCAACTTAGACACAT 59.161 41.667 0.00 0.00 0.00 3.21
239 240 5.047235 ACCCACTACTCAACTTAGACACATC 60.047 44.000 0.00 0.00 0.00 3.06
241 242 5.047306 CCACTACTCAACTTAGACACATCCA 60.047 44.000 0.00 0.00 0.00 3.41
244 245 7.604164 CACTACTCAACTTAGACACATCCATTT 59.396 37.037 0.00 0.00 0.00 2.32
245 246 8.812972 ACTACTCAACTTAGACACATCCATTTA 58.187 33.333 0.00 0.00 0.00 1.40
247 248 6.590292 ACTCAACTTAGACACATCCATTTACG 59.410 38.462 0.00 0.00 0.00 3.18
250 251 4.081087 ACTTAGACACATCCATTTACGCCT 60.081 41.667 0.00 0.00 0.00 5.52
252 253 3.686016 AGACACATCCATTTACGCCTTT 58.314 40.909 0.00 0.00 0.00 3.11
253 254 4.839121 AGACACATCCATTTACGCCTTTA 58.161 39.130 0.00 0.00 0.00 1.85
254 255 4.876107 AGACACATCCATTTACGCCTTTAG 59.124 41.667 0.00 0.00 0.00 1.85
255 256 3.945285 ACACATCCATTTACGCCTTTAGG 59.055 43.478 0.00 0.00 38.53 2.69
257 258 4.273480 CACATCCATTTACGCCTTTAGGAG 59.727 45.833 0.00 0.00 41.06 3.69
274 275 2.476081 AGGTTTCCCTCACCTTCCC 58.524 57.895 0.00 0.00 42.45 3.97
275 276 0.103876 AGGTTTCCCTCACCTTCCCT 60.104 55.000 0.00 0.00 42.45 4.20
276 277 0.328592 GGTTTCCCTCACCTTCCCTC 59.671 60.000 0.00 0.00 0.00 4.30
278 279 0.196118 TTTCCCTCACCTTCCCTCCT 59.804 55.000 0.00 0.00 0.00 3.69
279 280 1.098589 TTCCCTCACCTTCCCTCCTA 58.901 55.000 0.00 0.00 0.00 2.94
280 281 0.338814 TCCCTCACCTTCCCTCCTAC 59.661 60.000 0.00 0.00 0.00 3.18
281 282 0.340208 CCCTCACCTTCCCTCCTACT 59.660 60.000 0.00 0.00 0.00 2.57
282 283 1.273896 CCCTCACCTTCCCTCCTACTT 60.274 57.143 0.00 0.00 0.00 2.24
284 285 2.559931 CCTCACCTTCCCTCCTACTTGA 60.560 54.545 0.00 0.00 0.00 3.02
285 286 2.763448 CTCACCTTCCCTCCTACTTGAG 59.237 54.545 0.00 0.00 0.00 3.02
291 292 3.976339 CCTCCTACTTGAGGCATCG 57.024 57.895 0.00 0.00 45.13 3.84
293 294 2.307768 CCTCCTACTTGAGGCATCGTA 58.692 52.381 0.00 0.00 45.13 3.43
294 295 2.693591 CCTCCTACTTGAGGCATCGTAA 59.306 50.000 0.00 0.00 45.13 3.18
295 296 3.243569 CCTCCTACTTGAGGCATCGTAAG 60.244 52.174 0.00 0.00 45.13 2.34
311 312 4.989044 TCGTAAGATCAAAGCATACGACA 58.011 39.130 0.00 0.00 45.01 4.35
314 315 4.946784 AAGATCAAAGCATACGACAACC 57.053 40.909 0.00 0.00 0.00 3.77
316 317 3.935203 AGATCAAAGCATACGACAACCAG 59.065 43.478 0.00 0.00 0.00 4.00
317 318 1.804151 TCAAAGCATACGACAACCAGC 59.196 47.619 0.00 0.00 0.00 4.85
318 319 1.135689 CAAAGCATACGACAACCAGCC 60.136 52.381 0.00 0.00 0.00 4.85
322 323 1.359848 CATACGACAACCAGCCAGTC 58.640 55.000 0.00 0.00 0.00 3.51
326 327 2.460330 GACAACCAGCCAGTCGATG 58.540 57.895 0.00 0.00 0.00 3.84
329 330 1.078848 AACCAGCCAGTCGATGCTC 60.079 57.895 4.33 0.00 35.12 4.26
330 331 2.202987 CCAGCCAGTCGATGCTCC 60.203 66.667 4.33 0.00 35.12 4.70
331 332 2.580815 CAGCCAGTCGATGCTCCA 59.419 61.111 4.33 0.00 35.12 3.86
332 333 1.145598 CAGCCAGTCGATGCTCCAT 59.854 57.895 4.33 0.00 35.12 3.41
333 334 0.879400 CAGCCAGTCGATGCTCCATC 60.879 60.000 4.33 0.00 35.12 3.51
334 335 1.144716 GCCAGTCGATGCTCCATCA 59.855 57.895 6.09 0.00 40.54 3.07
337 338 1.537776 CCAGTCGATGCTCCATCACTC 60.538 57.143 6.09 0.00 40.54 3.51
338 339 0.749649 AGTCGATGCTCCATCACTCC 59.250 55.000 6.09 0.00 40.54 3.85
340 341 1.137872 GTCGATGCTCCATCACTCCTT 59.862 52.381 6.09 0.00 40.54 3.36
341 342 1.410517 TCGATGCTCCATCACTCCTTC 59.589 52.381 6.09 0.00 40.54 3.46
343 344 2.224233 CGATGCTCCATCACTCCTTCAT 60.224 50.000 6.09 0.00 40.54 2.57
344 345 2.996249 TGCTCCATCACTCCTTCATC 57.004 50.000 0.00 0.00 0.00 2.92
345 346 1.487976 TGCTCCATCACTCCTTCATCC 59.512 52.381 0.00 0.00 0.00 3.51
346 347 1.202746 GCTCCATCACTCCTTCATCCC 60.203 57.143 0.00 0.00 0.00 3.85
348 349 0.107456 CCATCACTCCTTCATCCCGG 59.893 60.000 0.00 0.00 0.00 5.73
349 350 0.833287 CATCACTCCTTCATCCCGGT 59.167 55.000 0.00 0.00 0.00 5.28
350 351 0.833287 ATCACTCCTTCATCCCGGTG 59.167 55.000 0.00 0.00 0.00 4.94
351 352 1.221840 CACTCCTTCATCCCGGTGG 59.778 63.158 0.00 0.00 0.00 4.61
352 353 2.190578 CTCCTTCATCCCGGTGGC 59.809 66.667 0.00 0.00 0.00 5.01
353 354 2.285368 TCCTTCATCCCGGTGGCT 60.285 61.111 0.00 0.00 0.00 4.75
357 358 1.689233 TTCATCCCGGTGGCTAGCT 60.689 57.895 15.72 0.00 0.00 3.32
358 359 1.971505 TTCATCCCGGTGGCTAGCTG 61.972 60.000 15.72 2.11 0.00 4.24
360 361 4.715130 TCCCGGTGGCTAGCTGGT 62.715 66.667 15.72 0.00 31.48 4.00
363 364 2.058595 CCGGTGGCTAGCTGGTACT 61.059 63.158 15.72 0.00 0.00 2.73
364 365 1.141881 CGGTGGCTAGCTGGTACTG 59.858 63.158 15.72 10.02 0.00 2.74
366 367 0.976073 GGTGGCTAGCTGGTACTGGA 60.976 60.000 15.72 0.00 0.00 3.86
367 368 0.461961 GTGGCTAGCTGGTACTGGAG 59.538 60.000 15.72 0.00 0.00 3.86
368 369 1.330655 TGGCTAGCTGGTACTGGAGC 61.331 60.000 15.72 0.00 35.28 4.70
370 371 0.103937 GCTAGCTGGTACTGGAGCTG 59.896 60.000 18.86 12.37 45.29 4.24
372 373 1.135915 CTAGCTGGTACTGGAGCTGTG 59.864 57.143 18.86 11.08 45.29 3.66
373 374 1.078848 GCTGGTACTGGAGCTGTGG 60.079 63.158 0.00 0.00 32.12 4.17
377 378 0.830648 GGTACTGGAGCTGTGGCATA 59.169 55.000 0.00 0.00 41.70 3.14
378 379 1.417890 GGTACTGGAGCTGTGGCATAT 59.582 52.381 0.00 0.00 41.70 1.78
379 380 2.548920 GGTACTGGAGCTGTGGCATATC 60.549 54.545 0.00 0.00 41.70 1.63
380 381 0.471617 ACTGGAGCTGTGGCATATCC 59.528 55.000 0.00 0.00 41.70 2.59
381 382 0.250640 CTGGAGCTGTGGCATATCCC 60.251 60.000 0.00 0.00 41.70 3.85
382 383 1.073897 GGAGCTGTGGCATATCCCC 59.926 63.158 0.00 0.00 41.70 4.81
383 384 1.073897 GAGCTGTGGCATATCCCCC 59.926 63.158 0.00 0.00 41.70 5.40
397 398 3.791749 CCCCCTCTCCCTCCTACT 58.208 66.667 0.00 0.00 0.00 2.57
398 399 2.028659 CCCCCTCTCCCTCCTACTT 58.971 63.158 0.00 0.00 0.00 2.24
400 401 0.938192 CCCCTCTCCCTCCTACTTCT 59.062 60.000 0.00 0.00 0.00 2.85
401 402 1.133294 CCCCTCTCCCTCCTACTTCTC 60.133 61.905 0.00 0.00 0.00 2.87
404 405 3.496331 CCTCTCCCTCCTACTTCTCATC 58.504 54.545 0.00 0.00 0.00 2.92
405 406 3.496331 CTCTCCCTCCTACTTCTCATCC 58.504 54.545 0.00 0.00 0.00 3.51
406 407 2.859404 TCTCCCTCCTACTTCTCATCCA 59.141 50.000 0.00 0.00 0.00 3.41
407 408 3.117322 TCTCCCTCCTACTTCTCATCCAG 60.117 52.174 0.00 0.00 0.00 3.86
408 409 2.859404 TCCCTCCTACTTCTCATCCAGA 59.141 50.000 0.00 0.00 0.00 3.86
409 410 3.272285 TCCCTCCTACTTCTCATCCAGAA 59.728 47.826 0.00 0.00 38.95 3.02
414 415 4.580995 TCCTACTTCTCATCCAGAACGATC 59.419 45.833 0.00 0.00 36.08 3.69
415 416 4.339530 CCTACTTCTCATCCAGAACGATCA 59.660 45.833 0.00 0.00 36.08 2.92
416 417 4.808414 ACTTCTCATCCAGAACGATCAA 57.192 40.909 0.00 0.00 36.08 2.57
419 420 6.176183 ACTTCTCATCCAGAACGATCAAATT 58.824 36.000 0.00 0.00 36.08 1.82
420 421 6.656693 ACTTCTCATCCAGAACGATCAAATTT 59.343 34.615 0.00 0.00 36.08 1.82
421 422 7.175641 ACTTCTCATCCAGAACGATCAAATTTT 59.824 33.333 0.00 0.00 36.08 1.82
422 423 8.560355 TTCTCATCCAGAACGATCAAATTTTA 57.440 30.769 0.00 0.00 36.08 1.52
423 424 8.201554 TCTCATCCAGAACGATCAAATTTTAG 57.798 34.615 0.00 0.00 0.00 1.85
424 425 8.040727 TCTCATCCAGAACGATCAAATTTTAGA 58.959 33.333 0.00 0.00 0.00 2.10
426 427 8.668353 TCATCCAGAACGATCAAATTTTAGAAG 58.332 33.333 0.00 0.00 0.00 2.85
429 430 7.119262 TCCAGAACGATCAAATTTTAGAAGACC 59.881 37.037 0.00 0.00 0.00 3.85
430 431 7.094805 CCAGAACGATCAAATTTTAGAAGACCA 60.095 37.037 0.00 0.00 0.00 4.02
431 432 8.289618 CAGAACGATCAAATTTTAGAAGACCAA 58.710 33.333 0.00 0.00 0.00 3.67
432 433 9.014297 AGAACGATCAAATTTTAGAAGACCAAT 57.986 29.630 0.00 0.00 0.00 3.16
434 435 7.464358 ACGATCAAATTTTAGAAGACCAATCG 58.536 34.615 0.00 0.00 37.65 3.34
435 436 6.907212 CGATCAAATTTTAGAAGACCAATCGG 59.093 38.462 0.00 0.00 38.77 4.18
491 492 7.301068 AGATTGAAGAATTGAACTGATCGTC 57.699 36.000 0.00 0.00 0.00 4.20
492 493 5.862924 TTGAAGAATTGAACTGATCGTCC 57.137 39.130 0.00 0.00 0.00 4.79
494 495 3.268023 AGAATTGAACTGATCGTCCCC 57.732 47.619 0.00 0.00 0.00 4.81
495 496 2.092914 AGAATTGAACTGATCGTCCCCC 60.093 50.000 0.00 0.00 0.00 5.40
496 497 1.584724 ATTGAACTGATCGTCCCCCT 58.415 50.000 0.00 0.00 0.00 4.79
497 498 0.902531 TTGAACTGATCGTCCCCCTC 59.097 55.000 0.00 0.00 0.00 4.30
498 499 0.041238 TGAACTGATCGTCCCCCTCT 59.959 55.000 0.00 0.00 0.00 3.69
500 501 1.682323 GAACTGATCGTCCCCCTCTAC 59.318 57.143 0.00 0.00 0.00 2.59
501 502 0.106116 ACTGATCGTCCCCCTCTACC 60.106 60.000 0.00 0.00 0.00 3.18
502 503 0.106167 CTGATCGTCCCCCTCTACCA 60.106 60.000 0.00 0.00 0.00 3.25
503 504 0.337082 TGATCGTCCCCCTCTACCAA 59.663 55.000 0.00 0.00 0.00 3.67
504 505 1.273381 TGATCGTCCCCCTCTACCAAA 60.273 52.381 0.00 0.00 0.00 3.28
505 506 2.047830 GATCGTCCCCCTCTACCAAAT 58.952 52.381 0.00 0.00 0.00 2.32
506 507 1.200519 TCGTCCCCCTCTACCAAATG 58.799 55.000 0.00 0.00 0.00 2.32
507 508 0.463833 CGTCCCCCTCTACCAAATGC 60.464 60.000 0.00 0.00 0.00 3.56
511 512 1.421646 CCCCCTCTACCAAATGCCTAG 59.578 57.143 0.00 0.00 0.00 3.02
514 515 1.202818 CCTCTACCAAATGCCTAGGCC 60.203 57.143 30.81 13.48 41.09 5.19
515 516 1.771255 CTCTACCAAATGCCTAGGCCT 59.229 52.381 30.81 19.15 41.09 5.19
516 517 2.972713 CTCTACCAAATGCCTAGGCCTA 59.027 50.000 30.81 14.18 41.09 3.93
517 518 2.704065 TCTACCAAATGCCTAGGCCTAC 59.296 50.000 30.81 4.06 41.09 3.18
518 519 1.295020 ACCAAATGCCTAGGCCTACA 58.705 50.000 30.81 12.95 41.09 2.74
519 520 1.852965 ACCAAATGCCTAGGCCTACAT 59.147 47.619 30.81 14.83 41.09 2.29
520 521 2.244769 ACCAAATGCCTAGGCCTACATT 59.755 45.455 30.81 19.87 41.09 2.71
521 522 2.887152 CCAAATGCCTAGGCCTACATTC 59.113 50.000 30.81 8.41 41.09 2.67
522 523 3.435601 CCAAATGCCTAGGCCTACATTCT 60.436 47.826 30.81 13.34 41.09 2.40
524 525 5.376625 CAAATGCCTAGGCCTACATTCTTA 58.623 41.667 30.81 8.49 41.09 2.10
526 527 4.417426 TGCCTAGGCCTACATTCTTAAC 57.583 45.455 30.81 0.00 41.09 2.01
527 528 4.037927 TGCCTAGGCCTACATTCTTAACT 58.962 43.478 30.81 0.00 41.09 2.24
528 529 4.101119 TGCCTAGGCCTACATTCTTAACTC 59.899 45.833 30.81 0.00 41.09 3.01
531 532 6.014499 GCCTAGGCCTACATTCTTAACTCATA 60.014 42.308 24.19 0.00 34.56 2.15
532 533 7.379750 CCTAGGCCTACATTCTTAACTCATAC 58.620 42.308 8.91 0.00 0.00 2.39
533 534 7.233757 CCTAGGCCTACATTCTTAACTCATACT 59.766 40.741 8.91 0.00 0.00 2.12
534 535 7.056844 AGGCCTACATTCTTAACTCATACTC 57.943 40.000 1.29 0.00 0.00 2.59
535 536 6.042208 AGGCCTACATTCTTAACTCATACTCC 59.958 42.308 1.29 0.00 0.00 3.85
536 537 6.042208 GGCCTACATTCTTAACTCATACTCCT 59.958 42.308 0.00 0.00 0.00 3.69
537 538 7.149307 GCCTACATTCTTAACTCATACTCCTC 58.851 42.308 0.00 0.00 0.00 3.71
538 539 7.662897 CCTACATTCTTAACTCATACTCCTCC 58.337 42.308 0.00 0.00 0.00 4.30
540 541 7.682787 ACATTCTTAACTCATACTCCTCCAT 57.317 36.000 0.00 0.00 0.00 3.41
541 542 8.095452 ACATTCTTAACTCATACTCCTCCATT 57.905 34.615 0.00 0.00 0.00 3.16
542 543 8.552296 ACATTCTTAACTCATACTCCTCCATTT 58.448 33.333 0.00 0.00 0.00 2.32
544 545 9.620259 ATTCTTAACTCATACTCCTCCATTTTC 57.380 33.333 0.00 0.00 0.00 2.29
547 548 9.401058 CTTAACTCATACTCCTCCATTTTCATT 57.599 33.333 0.00 0.00 0.00 2.57
550 551 6.096001 ACTCATACTCCTCCATTTTCATTTGC 59.904 38.462 0.00 0.00 0.00 3.68
551 552 6.189859 TCATACTCCTCCATTTTCATTTGCT 58.810 36.000 0.00 0.00 0.00 3.91
552 553 6.664816 TCATACTCCTCCATTTTCATTTGCTT 59.335 34.615 0.00 0.00 0.00 3.91
554 555 5.544650 ACTCCTCCATTTTCATTTGCTTTG 58.455 37.500 0.00 0.00 0.00 2.77
555 556 4.317488 TCCTCCATTTTCATTTGCTTTGC 58.683 39.130 0.00 0.00 0.00 3.68
559 560 5.477510 TCCATTTTCATTTGCTTTGCGTAT 58.522 33.333 0.00 0.00 0.00 3.06
560 561 5.931146 TCCATTTTCATTTGCTTTGCGTATT 59.069 32.000 0.00 0.00 0.00 1.89
561 562 7.093354 TCCATTTTCATTTGCTTTGCGTATTA 58.907 30.769 0.00 0.00 0.00 0.98
562 563 7.275341 TCCATTTTCATTTGCTTTGCGTATTAG 59.725 33.333 0.00 0.00 0.00 1.73
563 564 7.063308 CCATTTTCATTTGCTTTGCGTATTAGT 59.937 33.333 0.00 0.00 0.00 2.24
565 566 7.938563 TTTCATTTGCTTTGCGTATTAGTTT 57.061 28.000 0.00 0.00 0.00 2.66
566 567 7.938563 TTCATTTGCTTTGCGTATTAGTTTT 57.061 28.000 0.00 0.00 0.00 2.43
567 568 7.938563 TCATTTGCTTTGCGTATTAGTTTTT 57.061 28.000 0.00 0.00 0.00 1.94
588 589 4.314740 TTTCCCCTCAAATCAAACGTTG 57.685 40.909 0.00 0.00 0.00 4.10
591 592 4.462133 TCCCCTCAAATCAAACGTTGTTA 58.538 39.130 0.00 0.00 0.00 2.41
592 593 4.888239 TCCCCTCAAATCAAACGTTGTTAA 59.112 37.500 0.00 0.00 0.00 2.01
593 594 4.979815 CCCCTCAAATCAAACGTTGTTAAC 59.020 41.667 0.00 0.00 0.00 2.01
594 595 4.979815 CCCTCAAATCAAACGTTGTTAACC 59.020 41.667 0.00 0.00 0.00 2.85
596 597 5.232610 TCAAATCAAACGTTGTTAACCGT 57.767 34.783 0.00 3.55 39.32 4.83
597 598 5.029014 TCAAATCAAACGTTGTTAACCGTG 58.971 37.500 0.00 0.00 37.38 4.94
598 599 4.879104 AATCAAACGTTGTTAACCGTGA 57.121 36.364 0.00 0.00 37.38 4.35
599 600 3.654952 TCAAACGTTGTTAACCGTGAC 57.345 42.857 0.00 0.76 37.38 3.67
600 601 2.351111 TCAAACGTTGTTAACCGTGACC 59.649 45.455 0.00 0.00 37.38 4.02
601 602 2.021355 AACGTTGTTAACCGTGACCA 57.979 45.000 10.09 0.00 37.38 4.02
602 603 2.021355 ACGTTGTTAACCGTGACCAA 57.979 45.000 8.79 0.00 35.69 3.67
603 604 1.935199 ACGTTGTTAACCGTGACCAAG 59.065 47.619 8.79 0.00 35.69 3.61
605 606 2.803956 CGTTGTTAACCGTGACCAAGAT 59.196 45.455 2.48 0.00 0.00 2.40
606 607 3.249080 CGTTGTTAACCGTGACCAAGATT 59.751 43.478 2.48 0.00 0.00 2.40
607 608 4.448395 CGTTGTTAACCGTGACCAAGATTA 59.552 41.667 2.48 0.00 0.00 1.75
609 610 6.310956 CGTTGTTAACCGTGACCAAGATTATA 59.689 38.462 2.48 0.00 0.00 0.98
611 612 7.172868 TGTTAACCGTGACCAAGATTATAGA 57.827 36.000 2.48 0.00 0.00 1.98
612 613 7.037438 TGTTAACCGTGACCAAGATTATAGAC 58.963 38.462 2.48 0.00 0.00 2.59
613 614 5.670792 AACCGTGACCAAGATTATAGACA 57.329 39.130 0.00 0.00 0.00 3.41
614 615 5.871396 ACCGTGACCAAGATTATAGACAT 57.129 39.130 0.00 0.00 0.00 3.06
615 616 6.971726 ACCGTGACCAAGATTATAGACATA 57.028 37.500 0.00 0.00 0.00 2.29
616 617 6.746120 ACCGTGACCAAGATTATAGACATAC 58.254 40.000 0.00 0.00 0.00 2.39
617 618 6.157211 CCGTGACCAAGATTATAGACATACC 58.843 44.000 0.00 0.00 0.00 2.73
618 619 6.239204 CCGTGACCAAGATTATAGACATACCA 60.239 42.308 0.00 0.00 0.00 3.25
619 620 7.207383 CGTGACCAAGATTATAGACATACCAA 58.793 38.462 0.00 0.00 0.00 3.67
621 622 9.561069 GTGACCAAGATTATAGACATACCAAAT 57.439 33.333 0.00 0.00 0.00 2.32
762 763 8.966069 AACTAAGAGAGTATTAAATTCCAGGC 57.034 34.615 0.00 0.00 37.44 4.85
763 764 8.325477 ACTAAGAGAGTATTAAATTCCAGGCT 57.675 34.615 0.00 0.00 36.27 4.58
765 766 9.620259 CTAAGAGAGTATTAAATTCCAGGCTTT 57.380 33.333 0.00 0.00 0.00 3.51
766 767 7.872113 AGAGAGTATTAAATTCCAGGCTTTG 57.128 36.000 0.00 0.00 0.00 2.77
768 769 7.554476 AGAGAGTATTAAATTCCAGGCTTTGAC 59.446 37.037 0.00 0.00 0.00 3.18
769 770 7.175104 AGAGTATTAAATTCCAGGCTTTGACA 58.825 34.615 0.00 0.00 0.00 3.58
770 771 7.669722 AGAGTATTAAATTCCAGGCTTTGACAA 59.330 33.333 0.00 0.00 0.00 3.18
771 772 8.189119 AGTATTAAATTCCAGGCTTTGACAAA 57.811 30.769 0.00 0.00 0.00 2.83
773 774 7.967890 ATTAAATTCCAGGCTTTGACAAAAG 57.032 32.000 1.62 0.00 44.81 2.27
774 775 5.357742 AAATTCCAGGCTTTGACAAAAGT 57.642 34.783 1.62 0.00 44.02 2.66
776 777 2.733956 TCCAGGCTTTGACAAAAGTGT 58.266 42.857 1.62 0.00 44.02 3.55
777 778 3.096092 TCCAGGCTTTGACAAAAGTGTT 58.904 40.909 1.62 0.00 44.02 3.32
779 780 4.338118 TCCAGGCTTTGACAAAAGTGTTAG 59.662 41.667 1.62 0.00 44.02 2.34
780 781 4.044426 CAGGCTTTGACAAAAGTGTTAGC 58.956 43.478 1.62 0.00 44.02 3.09
781 782 3.068165 AGGCTTTGACAAAAGTGTTAGCC 59.932 43.478 14.38 14.38 46.70 3.93
782 783 3.181480 GGCTTTGACAAAAGTGTTAGCCA 60.181 43.478 16.45 0.00 46.19 4.75
784 785 4.867608 GCTTTGACAAAAGTGTTAGCCAAA 59.132 37.500 1.62 0.00 44.02 3.28
785 786 5.220397 GCTTTGACAAAAGTGTTAGCCAAAC 60.220 40.000 1.62 0.00 44.02 2.93
786 787 4.022464 TGACAAAAGTGTTAGCCAAACG 57.978 40.909 0.00 0.00 41.30 3.60
789 790 3.428316 ACAAAAGTGTTAGCCAAACGTGG 60.428 43.478 0.00 0.00 40.98 4.94
790 791 1.314730 AAGTGTTAGCCAAACGTGGG 58.685 50.000 2.22 2.22 46.09 4.61
801 802 4.776795 CCAAACGTGGGCTAGTAATTTT 57.223 40.909 0.00 0.00 41.77 1.82
802 803 5.128992 CCAAACGTGGGCTAGTAATTTTT 57.871 39.130 0.00 0.00 41.77 1.94
803 804 6.256912 CCAAACGTGGGCTAGTAATTTTTA 57.743 37.500 0.00 0.00 41.77 1.52
804 805 6.859017 CCAAACGTGGGCTAGTAATTTTTAT 58.141 36.000 0.00 0.00 41.77 1.40
805 806 7.317390 CCAAACGTGGGCTAGTAATTTTTATT 58.683 34.615 0.00 0.00 41.77 1.40
807 808 8.643752 CAAACGTGGGCTAGTAATTTTTATTTG 58.356 33.333 0.00 0.00 0.00 2.32
808 809 7.690952 ACGTGGGCTAGTAATTTTTATTTGA 57.309 32.000 0.00 0.00 0.00 2.69
809 810 7.758495 ACGTGGGCTAGTAATTTTTATTTGAG 58.242 34.615 0.00 0.00 0.00 3.02
810 811 7.148137 ACGTGGGCTAGTAATTTTTATTTGAGG 60.148 37.037 0.00 0.00 0.00 3.86
811 812 7.489160 GTGGGCTAGTAATTTTTATTTGAGGG 58.511 38.462 0.00 0.00 0.00 4.30
813 814 6.610020 GGGCTAGTAATTTTTATTTGAGGGGT 59.390 38.462 0.00 0.00 0.00 4.95
815 816 8.195436 GGCTAGTAATTTTTATTTGAGGGGTTC 58.805 37.037 0.00 0.00 0.00 3.62
818 819 8.499288 AGTAATTTTTATTTGAGGGGTTCCAA 57.501 30.769 0.00 0.00 34.83 3.53
820 821 9.733556 GTAATTTTTATTTGAGGGGTTCCAAAT 57.266 29.630 0.00 0.00 43.15 2.32
821 822 8.634335 AATTTTTATTTGAGGGGTTCCAAATG 57.366 30.769 0.00 0.00 41.45 2.32
822 823 6.755542 TTTTATTTGAGGGGTTCCAAATGT 57.244 33.333 0.00 0.00 41.45 2.71
823 824 5.736951 TTATTTGAGGGGTTCCAAATGTG 57.263 39.130 0.00 0.00 41.45 3.21
825 826 0.856982 TGAGGGGTTCCAAATGTGGT 59.143 50.000 0.65 0.00 46.11 4.16
826 827 1.256812 GAGGGGTTCCAAATGTGGTG 58.743 55.000 0.65 0.00 46.11 4.17
827 828 0.178935 AGGGGTTCCAAATGTGGTGG 60.179 55.000 0.65 0.00 46.11 4.61
828 829 0.178947 GGGGTTCCAAATGTGGTGGA 60.179 55.000 0.65 0.00 46.11 4.02
829 830 0.966179 GGGTTCCAAATGTGGTGGAC 59.034 55.000 0.65 0.00 44.94 4.02
830 831 1.480498 GGGTTCCAAATGTGGTGGACT 60.480 52.381 0.65 0.00 44.94 3.85
831 832 1.613437 GGTTCCAAATGTGGTGGACTG 59.387 52.381 0.65 0.00 44.94 3.51
832 833 1.613437 GTTCCAAATGTGGTGGACTGG 59.387 52.381 0.65 0.00 44.94 4.00
840 841 2.300967 TGGTGGACTGGGGAGATGC 61.301 63.158 0.00 0.00 0.00 3.91
844 845 1.075601 TGGACTGGGGAGATGCTTTT 58.924 50.000 0.00 0.00 0.00 2.27
856 857 4.868195 GCTTTTGCAAGTAGGCCG 57.132 55.556 0.00 0.00 46.58 6.13
921 931 2.113986 CCCTCGCATTCCCCATCC 59.886 66.667 0.00 0.00 0.00 3.51
922 932 2.113986 CCTCGCATTCCCCATCCC 59.886 66.667 0.00 0.00 0.00 3.85
923 933 2.113986 CTCGCATTCCCCATCCCC 59.886 66.667 0.00 0.00 0.00 4.81
924 934 2.368192 TCGCATTCCCCATCCCCT 60.368 61.111 0.00 0.00 0.00 4.79
925 935 2.113986 CGCATTCCCCATCCCCTC 59.886 66.667 0.00 0.00 0.00 4.30
928 938 1.849116 CATTCCCCATCCCCTCTGG 59.151 63.158 0.00 0.00 0.00 3.86
938 948 2.133858 TCCCCTCTGGAAATATCCCC 57.866 55.000 0.00 0.00 45.95 4.81
939 949 1.299942 TCCCCTCTGGAAATATCCCCA 59.700 52.381 0.00 0.00 45.95 4.96
940 950 1.425448 CCCCTCTGGAAATATCCCCAC 59.575 57.143 0.00 0.00 45.95 4.61
941 951 1.425448 CCCTCTGGAAATATCCCCACC 59.575 57.143 0.00 0.00 45.95 4.61
942 952 1.425448 CCTCTGGAAATATCCCCACCC 59.575 57.143 0.00 0.00 45.95 4.61
944 954 0.537371 CTGGAAATATCCCCACCCGC 60.537 60.000 0.00 0.00 45.95 6.13
945 955 1.599797 GGAAATATCCCCACCCGCG 60.600 63.158 0.00 0.00 40.10 6.46
946 956 2.203294 AAATATCCCCACCCGCGC 60.203 61.111 0.00 0.00 0.00 6.86
947 957 3.785122 AAATATCCCCACCCGCGCC 62.785 63.158 0.00 0.00 0.00 6.53
1354 3487 0.456221 CTACACCTCCGTCGATGCTT 59.544 55.000 0.00 0.00 0.00 3.91
1458 3606 2.027192 TGAGGTCAAGGTTATCAGGTGC 60.027 50.000 0.00 0.00 0.00 5.01
1477 3634 3.699894 CGCAGGTGCAGGAGGAGT 61.700 66.667 2.33 0.00 42.21 3.85
1514 3674 2.140792 ATATCGAGGTGCCGCCCTT 61.141 57.895 0.00 0.00 38.26 3.95
1518 3678 4.115199 GAGGTGCCGCCCTTGGAT 62.115 66.667 0.00 0.00 38.26 3.41
1527 3687 2.115291 GCCCTTGGATCTGCCGAAC 61.115 63.158 0.00 0.00 40.66 3.95
1551 3711 2.290514 CCTCAGAAAGTTGCTGGATGGA 60.291 50.000 11.13 0.00 34.20 3.41
1588 3748 4.274147 TGTGACTTTTGAGGTTAAAGGCA 58.726 39.130 0.00 0.00 45.77 4.75
1680 3849 2.361483 AGCGATGCCAATGCCACA 60.361 55.556 0.00 0.00 36.33 4.17
1685 3857 1.064505 CGATGCCAATGCCACAAGTAG 59.935 52.381 0.00 0.00 36.33 2.57
1701 3873 6.422100 CCACAAGTAGGAACATAATCATCGAG 59.578 42.308 0.00 0.00 0.00 4.04
1704 3876 7.015682 ACAAGTAGGAACATAATCATCGAGGAT 59.984 37.037 6.78 6.78 0.00 3.24
1710 3882 7.180946 AGGAACATAATCATCGAGGATATGGAA 59.819 37.037 13.70 0.00 0.00 3.53
2036 4211 3.130633 CACACCTCAAACGATCTTGTCA 58.869 45.455 0.00 0.00 0.00 3.58
2090 4265 7.414762 GGCTACCAAGTCTCGCAAAATTTAATA 60.415 37.037 0.00 0.00 0.00 0.98
2141 4332 5.196341 AGTCAGTTTAGTTGACATGTCGA 57.804 39.130 20.54 16.51 45.72 4.20
2142 4333 5.784177 AGTCAGTTTAGTTGACATGTCGAT 58.216 37.500 18.76 10.34 45.72 3.59
2143 4334 6.223852 AGTCAGTTTAGTTGACATGTCGATT 58.776 36.000 18.76 16.66 45.72 3.34
2144 4335 6.366332 AGTCAGTTTAGTTGACATGTCGATTC 59.634 38.462 18.76 7.28 45.72 2.52
2145 4336 6.145534 GTCAGTTTAGTTGACATGTCGATTCA 59.854 38.462 18.76 3.77 43.41 2.57
2146 4337 6.873605 TCAGTTTAGTTGACATGTCGATTCAT 59.126 34.615 18.76 8.33 0.00 2.57
2147 4338 7.063426 TCAGTTTAGTTGACATGTCGATTCATC 59.937 37.037 18.76 5.86 0.00 2.92
2148 4339 6.873605 AGTTTAGTTGACATGTCGATTCATCA 59.126 34.615 18.76 0.00 0.00 3.07
2149 4340 7.387673 AGTTTAGTTGACATGTCGATTCATCAA 59.612 33.333 18.76 3.75 0.00 2.57
2150 4341 7.665561 TTAGTTGACATGTCGATTCATCAAA 57.334 32.000 18.76 3.21 0.00 2.69
2151 4342 6.174451 AGTTGACATGTCGATTCATCAAAG 57.826 37.500 18.76 0.00 0.00 2.77
2152 4343 5.122869 AGTTGACATGTCGATTCATCAAAGG 59.877 40.000 18.76 0.00 0.00 3.11
2153 4344 4.578871 TGACATGTCGATTCATCAAAGGT 58.421 39.130 20.54 0.00 0.00 3.50
2154 4345 5.003160 TGACATGTCGATTCATCAAAGGTT 58.997 37.500 20.54 0.00 0.00 3.50
2155 4346 5.473162 TGACATGTCGATTCATCAAAGGTTT 59.527 36.000 20.54 0.00 0.00 3.27
2193 4465 9.593134 ACTAGTTTCTTATCTTGAGTTATGCTG 57.407 33.333 0.00 0.00 0.00 4.41
2251 4528 5.412904 GTGTAAGTTCTTTTGGAGGAGATGG 59.587 44.000 0.00 0.00 0.00 3.51
2281 4576 6.309251 GTCTTGCAAGATGTACTGAACTACTC 59.691 42.308 30.65 9.34 37.39 2.59
2545 4841 4.868171 GTGACGCTAGGTTCATGAACATAA 59.132 41.667 33.42 19.61 42.85 1.90
2548 4844 6.037062 TGACGCTAGGTTCATGAACATAAATG 59.963 38.462 33.42 24.39 42.85 2.32
2629 4958 8.400947 CCAGACTGTTAATAATCATGAACTTGG 58.599 37.037 0.00 0.00 0.00 3.61
2702 5031 6.261826 GCTTTTGCAGTCATTCTATAGGATGT 59.738 38.462 18.74 0.01 46.58 3.06
2703 5032 7.201767 GCTTTTGCAGTCATTCTATAGGATGTT 60.202 37.037 18.74 7.70 46.58 2.71
2752 5081 7.816995 GTGGTGAATTTATTCCTTGCACAATTA 59.183 33.333 0.00 0.00 35.97 1.40
2815 5144 2.080536 AGGGCATGCCAGGCTGATA 61.081 57.895 36.56 4.43 37.98 2.15
2825 5154 2.224161 GCCAGGCTGATACTCCTTACTG 60.224 54.545 17.94 0.00 0.00 2.74
2893 5222 5.300969 TGCTAATGTGAAGCAACTTGATC 57.699 39.130 0.00 0.00 46.57 2.92
2903 5232 3.076621 AGCAACTTGATCGAAATGCAGA 58.923 40.909 17.51 0.00 36.30 4.26
2928 5257 3.417185 GCAGTGCAAAATTCTAGCGTAC 58.583 45.455 11.09 0.00 0.00 3.67
2944 5274 3.885297 AGCGTACCGAATTAGCTAGGTAA 59.115 43.478 16.27 16.27 40.46 2.85
2951 5281 4.156915 CGAATTAGCTAGGTAACCGATCG 58.843 47.826 23.05 20.54 37.17 3.69
2957 5287 2.286891 GCTAGGTAACCGATCGTCTGTC 60.287 54.545 15.09 0.74 37.17 3.51
2960 5290 2.422832 AGGTAACCGATCGTCTGTCTTC 59.577 50.000 15.09 0.07 37.17 2.87
2962 5292 1.162698 AACCGATCGTCTGTCTTCGA 58.837 50.000 15.09 0.00 40.28 3.71
2972 5302 2.728839 GTCTGTCTTCGAACTCTTGCTG 59.271 50.000 0.00 0.00 0.00 4.41
3042 5379 7.637709 TGTTTCGTGTGATCATAGCATATAC 57.362 36.000 0.00 0.00 0.00 1.47
3068 5405 5.349270 TGCATATGTTCCGTGTAAGTTGTAC 59.651 40.000 4.29 0.00 0.00 2.90
3069 5406 5.579511 GCATATGTTCCGTGTAAGTTGTACT 59.420 40.000 4.29 0.00 0.00 2.73
3070 5407 6.237755 GCATATGTTCCGTGTAAGTTGTACTC 60.238 42.308 4.29 0.00 0.00 2.59
3071 5408 3.981211 TGTTCCGTGTAAGTTGTACTCC 58.019 45.455 0.00 0.00 0.00 3.85
3072 5409 3.243839 TGTTCCGTGTAAGTTGTACTCCC 60.244 47.826 0.00 0.00 0.00 4.30
3073 5410 2.880443 TCCGTGTAAGTTGTACTCCCT 58.120 47.619 0.00 0.00 0.00 4.20
3074 5411 3.233507 TCCGTGTAAGTTGTACTCCCTT 58.766 45.455 0.00 0.00 0.00 3.95
3075 5412 3.256631 TCCGTGTAAGTTGTACTCCCTTC 59.743 47.826 0.00 0.00 0.00 3.46
3076 5413 3.240069 CGTGTAAGTTGTACTCCCTTCG 58.760 50.000 0.00 0.00 0.00 3.79
3077 5414 3.304928 CGTGTAAGTTGTACTCCCTTCGT 60.305 47.826 0.00 0.00 0.00 3.85
3078 5415 4.625028 GTGTAAGTTGTACTCCCTTCGTT 58.375 43.478 0.00 0.00 0.00 3.85
3079 5416 4.683320 GTGTAAGTTGTACTCCCTTCGTTC 59.317 45.833 0.00 0.00 0.00 3.95
3080 5417 3.397849 AAGTTGTACTCCCTTCGTTCC 57.602 47.619 0.00 0.00 0.00 3.62
3081 5418 2.606378 AGTTGTACTCCCTTCGTTCCT 58.394 47.619 0.00 0.00 0.00 3.36
3082 5419 3.771216 AGTTGTACTCCCTTCGTTCCTA 58.229 45.455 0.00 0.00 0.00 2.94
3083 5420 4.154942 AGTTGTACTCCCTTCGTTCCTAA 58.845 43.478 0.00 0.00 0.00 2.69
3084 5421 4.590222 AGTTGTACTCCCTTCGTTCCTAAA 59.410 41.667 0.00 0.00 0.00 1.85
3085 5422 5.247792 AGTTGTACTCCCTTCGTTCCTAAAT 59.752 40.000 0.00 0.00 0.00 1.40
3086 5423 6.438425 AGTTGTACTCCCTTCGTTCCTAAATA 59.562 38.462 0.00 0.00 0.00 1.40
3087 5424 7.125356 AGTTGTACTCCCTTCGTTCCTAAATAT 59.875 37.037 0.00 0.00 0.00 1.28
3088 5425 8.416329 GTTGTACTCCCTTCGTTCCTAAATATA 58.584 37.037 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.077695 AGGTAATATGGATCGGAGGGAGT 59.922 47.826 0.00 0.00 0.00 3.85
1 2 3.449018 CAGGTAATATGGATCGGAGGGAG 59.551 52.174 0.00 0.00 0.00 4.30
2 3 3.181410 ACAGGTAATATGGATCGGAGGGA 60.181 47.826 0.00 0.00 0.00 4.20
4 5 4.569943 CAACAGGTAATATGGATCGGAGG 58.430 47.826 0.00 0.00 0.00 4.30
7 8 3.738982 TGCAACAGGTAATATGGATCGG 58.261 45.455 0.00 0.00 0.00 4.18
8 9 5.240891 AGATGCAACAGGTAATATGGATCG 58.759 41.667 0.00 0.00 43.02 3.69
9 10 7.516198 AAAGATGCAACAGGTAATATGGATC 57.484 36.000 0.00 0.00 39.89 3.36
10 11 8.220559 ACTAAAGATGCAACAGGTAATATGGAT 58.779 33.333 0.00 0.00 0.00 3.41
11 12 7.573710 ACTAAAGATGCAACAGGTAATATGGA 58.426 34.615 0.00 0.00 0.00 3.41
12 13 7.807977 ACTAAAGATGCAACAGGTAATATGG 57.192 36.000 0.00 0.00 0.00 2.74
13 14 9.325198 TGTACTAAAGATGCAACAGGTAATATG 57.675 33.333 0.00 0.00 0.00 1.78
14 15 9.899661 TTGTACTAAAGATGCAACAGGTAATAT 57.100 29.630 0.00 0.00 0.00 1.28
16 17 8.677300 CATTGTACTAAAGATGCAACAGGTAAT 58.323 33.333 0.00 0.00 0.00 1.89
17 18 7.663905 ACATTGTACTAAAGATGCAACAGGTAA 59.336 33.333 0.00 0.00 0.00 2.85
18 19 7.165485 ACATTGTACTAAAGATGCAACAGGTA 58.835 34.615 0.00 0.00 0.00 3.08
19 20 6.003950 ACATTGTACTAAAGATGCAACAGGT 58.996 36.000 0.00 0.00 0.00 4.00
21 22 8.256611 ACTACATTGTACTAAAGATGCAACAG 57.743 34.615 0.00 0.00 0.00 3.16
22 23 9.713713 TTACTACATTGTACTAAAGATGCAACA 57.286 29.630 0.00 0.00 0.00 3.33
34 35 9.424319 CTTGTCACATCTTTACTACATTGTACT 57.576 33.333 0.00 0.00 0.00 2.73
36 37 7.875554 TGCTTGTCACATCTTTACTACATTGTA 59.124 33.333 0.00 0.00 0.00 2.41
38 39 7.132694 TGCTTGTCACATCTTTACTACATTG 57.867 36.000 0.00 0.00 0.00 2.82
39 40 7.744087 TTGCTTGTCACATCTTTACTACATT 57.256 32.000 0.00 0.00 0.00 2.71
40 41 7.928307 ATTGCTTGTCACATCTTTACTACAT 57.072 32.000 0.00 0.00 0.00 2.29
42 43 8.338259 CCATATTGCTTGTCACATCTTTACTAC 58.662 37.037 0.00 0.00 0.00 2.73
43 44 8.264347 TCCATATTGCTTGTCACATCTTTACTA 58.736 33.333 0.00 0.00 0.00 1.82
44 45 7.112122 TCCATATTGCTTGTCACATCTTTACT 58.888 34.615 0.00 0.00 0.00 2.24
45 46 7.320443 TCCATATTGCTTGTCACATCTTTAC 57.680 36.000 0.00 0.00 0.00 2.01
46 47 9.276590 CTATCCATATTGCTTGTCACATCTTTA 57.723 33.333 0.00 0.00 0.00 1.85
47 48 7.230108 CCTATCCATATTGCTTGTCACATCTTT 59.770 37.037 0.00 0.00 0.00 2.52
48 49 6.713903 CCTATCCATATTGCTTGTCACATCTT 59.286 38.462 0.00 0.00 0.00 2.40
49 50 6.043590 TCCTATCCATATTGCTTGTCACATCT 59.956 38.462 0.00 0.00 0.00 2.90
50 51 6.233434 TCCTATCCATATTGCTTGTCACATC 58.767 40.000 0.00 0.00 0.00 3.06
53 54 4.999950 CCTCCTATCCATATTGCTTGTCAC 59.000 45.833 0.00 0.00 0.00 3.67
55 56 4.287067 TCCCTCCTATCCATATTGCTTGTC 59.713 45.833 0.00 0.00 0.00 3.18
56 57 4.242811 TCCCTCCTATCCATATTGCTTGT 58.757 43.478 0.00 0.00 0.00 3.16
57 58 4.288105 ACTCCCTCCTATCCATATTGCTTG 59.712 45.833 0.00 0.00 0.00 4.01
58 59 4.507342 ACTCCCTCCTATCCATATTGCTT 58.493 43.478 0.00 0.00 0.00 3.91
59 60 4.153371 ACTCCCTCCTATCCATATTGCT 57.847 45.455 0.00 0.00 0.00 3.91
60 61 5.026790 AGTACTCCCTCCTATCCATATTGC 58.973 45.833 0.00 0.00 0.00 3.56
61 62 8.666129 TTTAGTACTCCCTCCTATCCATATTG 57.334 38.462 0.00 0.00 0.00 1.90
62 63 9.860393 AATTTAGTACTCCCTCCTATCCATATT 57.140 33.333 0.00 0.00 0.00 1.28
63 64 9.860393 AAATTTAGTACTCCCTCCTATCCATAT 57.140 33.333 0.00 0.00 0.00 1.78
64 65 9.101325 CAAATTTAGTACTCCCTCCTATCCATA 57.899 37.037 0.00 0.00 0.00 2.74
66 67 6.329197 CCAAATTTAGTACTCCCTCCTATCCA 59.671 42.308 0.00 0.00 0.00 3.41
67 68 6.329460 ACCAAATTTAGTACTCCCTCCTATCC 59.671 42.308 0.00 0.00 0.00 2.59
68 69 7.070821 TGACCAAATTTAGTACTCCCTCCTATC 59.929 40.741 0.00 0.00 0.00 2.08
69 70 6.906901 TGACCAAATTTAGTACTCCCTCCTAT 59.093 38.462 0.00 0.00 0.00 2.57
70 71 6.266080 TGACCAAATTTAGTACTCCCTCCTA 58.734 40.000 0.00 0.00 0.00 2.94
72 73 5.189145 TCTGACCAAATTTAGTACTCCCTCC 59.811 44.000 0.00 0.00 0.00 4.30
73 74 6.295719 TCTGACCAAATTTAGTACTCCCTC 57.704 41.667 0.00 0.00 0.00 4.30
76 77 8.847196 AGTTTTTCTGACCAAATTTAGTACTCC 58.153 33.333 0.00 0.00 0.00 3.85
123 124 8.640063 TCCAAGAGGGTAAAAATTAAACTACC 57.360 34.615 0.00 0.00 38.11 3.18
125 126 8.745590 GCATCCAAGAGGGTAAAAATTAAACTA 58.254 33.333 0.00 0.00 38.11 2.24
126 127 7.310423 GGCATCCAAGAGGGTAAAAATTAAACT 60.310 37.037 0.00 0.00 38.11 2.66
127 128 6.816640 GGCATCCAAGAGGGTAAAAATTAAAC 59.183 38.462 0.00 0.00 38.11 2.01
128 129 6.070481 GGGCATCCAAGAGGGTAAAAATTAAA 60.070 38.462 0.00 0.00 38.11 1.52
129 130 5.423931 GGGCATCCAAGAGGGTAAAAATTAA 59.576 40.000 0.00 0.00 38.11 1.40
131 132 3.774766 GGGCATCCAAGAGGGTAAAAATT 59.225 43.478 0.00 0.00 38.11 1.82
132 133 3.245948 TGGGCATCCAAGAGGGTAAAAAT 60.246 43.478 0.00 0.00 40.73 1.82
133 134 2.110899 TGGGCATCCAAGAGGGTAAAAA 59.889 45.455 0.00 0.00 40.73 1.94
136 137 3.112878 TGGGCATCCAAGAGGGTAA 57.887 52.632 0.00 0.00 40.73 2.85
137 138 4.931292 TGGGCATCCAAGAGGGTA 57.069 55.556 0.00 0.00 40.73 3.69
150 151 1.000607 GTTTCTTCGGTCCTTTTGGGC 60.001 52.381 0.00 0.00 45.31 5.36
151 152 2.293399 CAGTTTCTTCGGTCCTTTTGGG 59.707 50.000 0.00 0.00 40.87 4.12
152 153 3.211045 TCAGTTTCTTCGGTCCTTTTGG 58.789 45.455 0.00 0.00 42.21 3.28
154 155 4.417426 TCTCAGTTTCTTCGGTCCTTTT 57.583 40.909 0.00 0.00 0.00 2.27
158 159 4.261072 GGTTTTTCTCAGTTTCTTCGGTCC 60.261 45.833 0.00 0.00 0.00 4.46
160 161 4.266714 TGGTTTTTCTCAGTTTCTTCGGT 58.733 39.130 0.00 0.00 0.00 4.69
161 162 4.893424 TGGTTTTTCTCAGTTTCTTCGG 57.107 40.909 0.00 0.00 0.00 4.30
162 163 7.111593 CGTTATTGGTTTTTCTCAGTTTCTTCG 59.888 37.037 0.00 0.00 0.00 3.79
166 167 5.115021 CGCGTTATTGGTTTTTCTCAGTTTC 59.885 40.000 0.00 0.00 0.00 2.78
167 168 4.973663 CGCGTTATTGGTTTTTCTCAGTTT 59.026 37.500 0.00 0.00 0.00 2.66
168 169 4.533222 CGCGTTATTGGTTTTTCTCAGTT 58.467 39.130 0.00 0.00 0.00 3.16
169 170 3.608474 GCGCGTTATTGGTTTTTCTCAGT 60.608 43.478 8.43 0.00 0.00 3.41
170 171 2.908626 GCGCGTTATTGGTTTTTCTCAG 59.091 45.455 8.43 0.00 0.00 3.35
172 173 2.923643 TGCGCGTTATTGGTTTTTCTC 58.076 42.857 8.43 0.00 0.00 2.87
173 174 3.047093 GTTGCGCGTTATTGGTTTTTCT 58.953 40.909 8.43 0.00 0.00 2.52
174 175 2.154198 GGTTGCGCGTTATTGGTTTTTC 59.846 45.455 8.43 0.00 0.00 2.29
175 176 2.128821 GGTTGCGCGTTATTGGTTTTT 58.871 42.857 8.43 0.00 0.00 1.94
176 177 1.338655 AGGTTGCGCGTTATTGGTTTT 59.661 42.857 8.43 0.00 0.00 2.43
177 178 0.955905 AGGTTGCGCGTTATTGGTTT 59.044 45.000 8.43 0.00 0.00 3.27
178 179 0.519961 GAGGTTGCGCGTTATTGGTT 59.480 50.000 8.43 0.00 0.00 3.67
179 180 0.604243 TGAGGTTGCGCGTTATTGGT 60.604 50.000 8.43 0.00 0.00 3.67
180 181 0.519519 TTGAGGTTGCGCGTTATTGG 59.480 50.000 8.43 0.00 0.00 3.16
181 182 2.176369 CATTGAGGTTGCGCGTTATTG 58.824 47.619 8.43 0.00 0.00 1.90
182 183 1.467374 GCATTGAGGTTGCGCGTTATT 60.467 47.619 8.43 0.00 0.00 1.40
184 185 1.231296 TGCATTGAGGTTGCGCGTTA 61.231 50.000 8.43 0.00 43.10 3.18
185 186 1.865788 ATGCATTGAGGTTGCGCGTT 61.866 50.000 8.43 0.00 43.10 4.84
186 187 1.865788 AATGCATTGAGGTTGCGCGT 61.866 50.000 12.09 0.00 43.10 6.01
187 188 0.098552 TAATGCATTGAGGTTGCGCG 59.901 50.000 22.27 0.00 43.10 6.86
189 190 2.223340 GGACTAATGCATTGAGGTTGCG 60.223 50.000 22.27 2.91 43.10 4.85
190 191 2.099756 GGGACTAATGCATTGAGGTTGC 59.900 50.000 22.27 6.40 40.55 4.17
191 192 3.129287 GTGGGACTAATGCATTGAGGTTG 59.871 47.826 22.27 7.36 0.00 3.77
192 193 3.245229 TGTGGGACTAATGCATTGAGGTT 60.245 43.478 22.27 0.00 0.00 3.50
193 194 2.308570 TGTGGGACTAATGCATTGAGGT 59.691 45.455 22.27 16.41 0.00 3.85
194 195 3.003394 TGTGGGACTAATGCATTGAGG 57.997 47.619 22.27 13.52 0.00 3.86
195 196 3.129287 GGTTGTGGGACTAATGCATTGAG 59.871 47.826 22.27 16.05 0.00 3.02
196 197 3.088532 GGTTGTGGGACTAATGCATTGA 58.911 45.455 22.27 5.42 0.00 2.57
197 198 2.166254 GGGTTGTGGGACTAATGCATTG 59.834 50.000 22.27 13.69 0.00 2.82
198 199 2.225242 TGGGTTGTGGGACTAATGCATT 60.225 45.455 17.56 17.56 0.00 3.56
199 200 1.357420 TGGGTTGTGGGACTAATGCAT 59.643 47.619 0.00 0.00 0.00 3.96
200 201 0.774276 TGGGTTGTGGGACTAATGCA 59.226 50.000 0.00 0.00 0.00 3.96
201 202 1.173913 GTGGGTTGTGGGACTAATGC 58.826 55.000 0.00 0.00 0.00 3.56
202 203 2.879103 AGTGGGTTGTGGGACTAATG 57.121 50.000 0.00 0.00 0.00 1.90
203 204 3.518303 GAGTAGTGGGTTGTGGGACTAAT 59.482 47.826 0.00 0.00 0.00 1.73
204 205 2.901839 GAGTAGTGGGTTGTGGGACTAA 59.098 50.000 0.00 0.00 0.00 2.24
205 206 2.158279 TGAGTAGTGGGTTGTGGGACTA 60.158 50.000 0.00 0.00 0.00 2.59
208 209 1.418637 GTTGAGTAGTGGGTTGTGGGA 59.581 52.381 0.00 0.00 0.00 4.37
209 210 1.420138 AGTTGAGTAGTGGGTTGTGGG 59.580 52.381 0.00 0.00 0.00 4.61
210 211 2.930826 AGTTGAGTAGTGGGTTGTGG 57.069 50.000 0.00 0.00 0.00 4.17
211 212 4.989168 GTCTAAGTTGAGTAGTGGGTTGTG 59.011 45.833 0.00 0.00 0.00 3.33
212 213 4.652421 TGTCTAAGTTGAGTAGTGGGTTGT 59.348 41.667 0.00 0.00 0.00 3.32
213 214 4.989168 GTGTCTAAGTTGAGTAGTGGGTTG 59.011 45.833 0.00 0.00 0.00 3.77
215 216 4.220724 TGTGTCTAAGTTGAGTAGTGGGT 58.779 43.478 0.00 0.00 0.00 4.51
216 217 4.866508 TGTGTCTAAGTTGAGTAGTGGG 57.133 45.455 0.00 0.00 0.00 4.61
220 221 9.088512 GTAAATGGATGTGTCTAAGTTGAGTAG 57.911 37.037 0.00 0.00 0.00 2.57
221 222 7.758076 CGTAAATGGATGTGTCTAAGTTGAGTA 59.242 37.037 0.00 0.00 0.00 2.59
222 223 6.590292 CGTAAATGGATGTGTCTAAGTTGAGT 59.410 38.462 0.00 0.00 0.00 3.41
223 224 6.455646 GCGTAAATGGATGTGTCTAAGTTGAG 60.456 42.308 0.00 0.00 0.00 3.02
224 225 5.350365 GCGTAAATGGATGTGTCTAAGTTGA 59.650 40.000 0.00 0.00 0.00 3.18
225 226 5.447279 GGCGTAAATGGATGTGTCTAAGTTG 60.447 44.000 0.00 0.00 0.00 3.16
226 227 4.634443 GGCGTAAATGGATGTGTCTAAGTT 59.366 41.667 0.00 0.00 0.00 2.66
229 230 4.481368 AGGCGTAAATGGATGTGTCTAA 57.519 40.909 0.00 0.00 0.00 2.10
231 232 3.350219 AAGGCGTAAATGGATGTGTCT 57.650 42.857 0.00 0.00 0.00 3.41
232 233 4.035208 CCTAAAGGCGTAAATGGATGTGTC 59.965 45.833 0.00 0.00 0.00 3.67
234 235 4.196193 TCCTAAAGGCGTAAATGGATGTG 58.804 43.478 0.00 0.00 34.44 3.21
236 237 3.815401 CCTCCTAAAGGCGTAAATGGATG 59.185 47.826 0.00 0.00 38.67 3.51
237 238 4.086706 CCTCCTAAAGGCGTAAATGGAT 57.913 45.455 0.00 0.00 38.67 3.41
238 239 3.553828 CCTCCTAAAGGCGTAAATGGA 57.446 47.619 0.00 0.00 38.67 3.41
260 261 1.098589 TAGGAGGGAAGGTGAGGGAA 58.901 55.000 0.00 0.00 0.00 3.97
261 262 0.338814 GTAGGAGGGAAGGTGAGGGA 59.661 60.000 0.00 0.00 0.00 4.20
264 265 2.763448 CTCAAGTAGGAGGGAAGGTGAG 59.237 54.545 0.00 0.00 0.00 3.51
265 266 2.821437 CTCAAGTAGGAGGGAAGGTGA 58.179 52.381 0.00 0.00 0.00 4.02
278 279 5.592104 TTGATCTTACGATGCCTCAAGTA 57.408 39.130 0.00 0.00 0.00 2.24
279 280 4.471904 TTGATCTTACGATGCCTCAAGT 57.528 40.909 0.00 0.00 0.00 3.16
280 281 4.260538 GCTTTGATCTTACGATGCCTCAAG 60.261 45.833 0.00 0.00 0.00 3.02
281 282 3.623060 GCTTTGATCTTACGATGCCTCAA 59.377 43.478 0.00 0.00 0.00 3.02
282 283 3.198068 GCTTTGATCTTACGATGCCTCA 58.802 45.455 0.00 0.00 0.00 3.86
284 285 3.266510 TGCTTTGATCTTACGATGCCT 57.733 42.857 0.00 0.00 0.00 4.75
285 286 4.376413 CGTATGCTTTGATCTTACGATGCC 60.376 45.833 0.00 0.00 38.82 4.40
287 288 5.458779 TGTCGTATGCTTTGATCTTACGATG 59.541 40.000 12.06 0.00 43.43 3.84
289 290 4.989044 TGTCGTATGCTTTGATCTTACGA 58.011 39.130 0.00 6.93 41.23 3.43
290 291 5.481472 GTTGTCGTATGCTTTGATCTTACG 58.519 41.667 0.00 0.00 38.27 3.18
291 292 5.350365 TGGTTGTCGTATGCTTTGATCTTAC 59.650 40.000 0.00 0.00 0.00 2.34
293 294 4.323417 TGGTTGTCGTATGCTTTGATCTT 58.677 39.130 0.00 0.00 0.00 2.40
294 295 3.935203 CTGGTTGTCGTATGCTTTGATCT 59.065 43.478 0.00 0.00 0.00 2.75
295 296 3.485877 GCTGGTTGTCGTATGCTTTGATC 60.486 47.826 0.00 0.00 0.00 2.92
296 297 2.420022 GCTGGTTGTCGTATGCTTTGAT 59.580 45.455 0.00 0.00 0.00 2.57
299 300 1.165270 GGCTGGTTGTCGTATGCTTT 58.835 50.000 0.00 0.00 0.00 3.51
300 301 0.036164 TGGCTGGTTGTCGTATGCTT 59.964 50.000 0.00 0.00 0.00 3.91
301 302 0.391661 CTGGCTGGTTGTCGTATGCT 60.392 55.000 0.00 0.00 0.00 3.79
302 303 0.673644 ACTGGCTGGTTGTCGTATGC 60.674 55.000 0.00 0.00 0.00 3.14
304 305 0.108804 CGACTGGCTGGTTGTCGTAT 60.109 55.000 6.59 0.00 45.54 3.06
305 306 1.287815 CGACTGGCTGGTTGTCGTA 59.712 57.895 6.59 0.00 45.54 3.43
306 307 2.029073 CGACTGGCTGGTTGTCGT 59.971 61.111 6.59 0.00 45.54 4.34
308 309 1.639298 GCATCGACTGGCTGGTTGTC 61.639 60.000 0.00 0.00 0.00 3.18
309 310 1.672356 GCATCGACTGGCTGGTTGT 60.672 57.895 0.00 0.00 0.00 3.32
310 311 1.364626 GAGCATCGACTGGCTGGTTG 61.365 60.000 12.21 0.00 41.22 3.77
311 312 1.078848 GAGCATCGACTGGCTGGTT 60.079 57.895 12.21 0.00 41.22 3.67
314 315 0.879400 GATGGAGCATCGACTGGCTG 60.879 60.000 12.21 0.00 41.22 4.85
316 317 1.144716 TGATGGAGCATCGACTGGC 59.855 57.895 0.00 0.00 43.14 4.85
317 318 0.463204 AGTGATGGAGCATCGACTGG 59.537 55.000 0.00 0.00 43.14 4.00
318 319 1.537776 GGAGTGATGGAGCATCGACTG 60.538 57.143 0.00 0.00 43.14 3.51
322 323 1.137675 TGAAGGAGTGATGGAGCATCG 59.862 52.381 0.00 0.00 43.14 3.84
323 324 2.996249 TGAAGGAGTGATGGAGCATC 57.004 50.000 0.00 0.00 40.88 3.91
324 325 2.106166 GGATGAAGGAGTGATGGAGCAT 59.894 50.000 0.00 0.00 0.00 3.79
325 326 1.487976 GGATGAAGGAGTGATGGAGCA 59.512 52.381 0.00 0.00 0.00 4.26
326 327 1.202746 GGGATGAAGGAGTGATGGAGC 60.203 57.143 0.00 0.00 0.00 4.70
329 330 0.107456 CCGGGATGAAGGAGTGATGG 59.893 60.000 0.00 0.00 0.00 3.51
330 331 0.833287 ACCGGGATGAAGGAGTGATG 59.167 55.000 6.32 0.00 0.00 3.07
331 332 0.833287 CACCGGGATGAAGGAGTGAT 59.167 55.000 6.32 0.00 0.00 3.06
332 333 1.264749 CCACCGGGATGAAGGAGTGA 61.265 60.000 6.32 0.00 35.59 3.41
333 334 1.221840 CCACCGGGATGAAGGAGTG 59.778 63.158 6.32 0.00 35.59 3.51
334 335 2.670148 GCCACCGGGATGAAGGAGT 61.670 63.158 6.32 0.00 35.59 3.85
337 338 1.447643 CTAGCCACCGGGATGAAGG 59.552 63.158 6.32 0.00 35.59 3.46
338 339 1.227674 GCTAGCCACCGGGATGAAG 60.228 63.158 6.32 0.00 35.59 3.02
340 341 2.041922 AGCTAGCCACCGGGATGA 60.042 61.111 12.13 0.00 35.59 2.92
341 342 2.109799 CAGCTAGCCACCGGGATG 59.890 66.667 12.13 0.00 35.59 3.51
343 344 3.305619 TACCAGCTAGCCACCGGGA 62.306 63.158 12.13 0.41 35.59 5.14
344 345 2.762459 TACCAGCTAGCCACCGGG 60.762 66.667 12.13 8.20 37.18 5.73
345 346 2.058595 AGTACCAGCTAGCCACCGG 61.059 63.158 12.13 9.76 0.00 5.28
346 347 1.141881 CAGTACCAGCTAGCCACCG 59.858 63.158 12.13 0.00 0.00 4.94
348 349 0.461961 CTCCAGTACCAGCTAGCCAC 59.538 60.000 12.13 4.68 0.00 5.01
349 350 1.330655 GCTCCAGTACCAGCTAGCCA 61.331 60.000 12.13 0.00 32.48 4.75
350 351 1.045911 AGCTCCAGTACCAGCTAGCC 61.046 60.000 12.13 0.00 44.45 3.93
351 352 0.103937 CAGCTCCAGTACCAGCTAGC 59.896 60.000 6.62 6.62 44.47 3.42
352 353 1.135915 CACAGCTCCAGTACCAGCTAG 59.864 57.143 10.43 8.34 44.47 3.42
353 354 1.186200 CACAGCTCCAGTACCAGCTA 58.814 55.000 10.43 0.00 44.47 3.32
357 358 1.200760 ATGCCACAGCTCCAGTACCA 61.201 55.000 0.00 0.00 40.80 3.25
358 359 0.830648 TATGCCACAGCTCCAGTACC 59.169 55.000 0.00 0.00 40.80 3.34
360 361 1.694150 GGATATGCCACAGCTCCAGTA 59.306 52.381 0.00 0.00 40.80 2.74
363 364 1.708993 GGGGATATGCCACAGCTCCA 61.709 60.000 15.93 0.00 41.00 3.86
364 365 1.073897 GGGGATATGCCACAGCTCC 59.926 63.158 15.93 0.00 41.00 4.70
366 367 3.255032 GGGGGATATGCCACAGCT 58.745 61.111 15.93 0.00 44.24 4.24
380 381 0.105401 GAAGTAGGAGGGAGAGGGGG 60.105 65.000 0.00 0.00 0.00 5.40
381 382 0.938192 AGAAGTAGGAGGGAGAGGGG 59.062 60.000 0.00 0.00 0.00 4.79
382 383 1.571457 TGAGAAGTAGGAGGGAGAGGG 59.429 57.143 0.00 0.00 0.00 4.30
383 384 3.496331 GATGAGAAGTAGGAGGGAGAGG 58.504 54.545 0.00 0.00 0.00 3.69
384 385 3.117322 TGGATGAGAAGTAGGAGGGAGAG 60.117 52.174 0.00 0.00 0.00 3.20
387 388 2.859404 TCTGGATGAGAAGTAGGAGGGA 59.141 50.000 0.00 0.00 0.00 4.20
389 390 3.067461 CGTTCTGGATGAGAAGTAGGAGG 59.933 52.174 0.00 0.00 41.58 4.30
390 391 3.948473 TCGTTCTGGATGAGAAGTAGGAG 59.052 47.826 0.00 0.00 41.58 3.69
391 392 3.964411 TCGTTCTGGATGAGAAGTAGGA 58.036 45.455 0.00 0.00 41.58 2.94
392 393 4.339530 TGATCGTTCTGGATGAGAAGTAGG 59.660 45.833 0.00 0.00 41.58 3.18
393 394 5.506686 TGATCGTTCTGGATGAGAAGTAG 57.493 43.478 0.00 0.00 41.58 2.57
394 395 5.914898 TTGATCGTTCTGGATGAGAAGTA 57.085 39.130 0.00 0.00 41.58 2.24
395 396 4.808414 TTGATCGTTCTGGATGAGAAGT 57.192 40.909 0.00 0.00 41.58 3.01
396 397 6.674694 AATTTGATCGTTCTGGATGAGAAG 57.325 37.500 0.00 0.00 41.58 2.85
397 398 7.452880 AAAATTTGATCGTTCTGGATGAGAA 57.547 32.000 0.00 0.00 38.45 2.87
398 399 8.040727 TCTAAAATTTGATCGTTCTGGATGAGA 58.959 33.333 0.00 0.00 0.00 3.27
400 401 8.560355 TTCTAAAATTTGATCGTTCTGGATGA 57.440 30.769 0.00 0.00 0.00 2.92
401 402 8.668353 TCTTCTAAAATTTGATCGTTCTGGATG 58.332 33.333 0.00 0.00 0.00 3.51
404 405 7.094805 TGGTCTTCTAAAATTTGATCGTTCTGG 60.095 37.037 0.00 0.00 0.00 3.86
405 406 7.806690 TGGTCTTCTAAAATTTGATCGTTCTG 58.193 34.615 0.00 0.00 0.00 3.02
406 407 7.979444 TGGTCTTCTAAAATTTGATCGTTCT 57.021 32.000 0.00 0.00 0.00 3.01
407 408 9.278734 GATTGGTCTTCTAAAATTTGATCGTTC 57.721 33.333 0.00 0.00 0.00 3.95
408 409 7.962918 CGATTGGTCTTCTAAAATTTGATCGTT 59.037 33.333 0.00 0.00 0.00 3.85
409 410 7.414098 CCGATTGGTCTTCTAAAATTTGATCGT 60.414 37.037 0.00 0.00 32.16 3.73
465 466 8.777865 ACGATCAGTTCAATTCTTCAATCTAA 57.222 30.769 0.00 0.00 0.00 2.10
467 468 6.314896 GGACGATCAGTTCAATTCTTCAATCT 59.685 38.462 0.00 0.00 0.00 2.40
468 469 6.457528 GGGACGATCAGTTCAATTCTTCAATC 60.458 42.308 0.00 0.00 0.00 2.67
470 471 4.695455 GGGACGATCAGTTCAATTCTTCAA 59.305 41.667 0.00 0.00 0.00 2.69
471 472 4.253685 GGGACGATCAGTTCAATTCTTCA 58.746 43.478 0.00 0.00 0.00 3.02
472 473 3.623510 GGGGACGATCAGTTCAATTCTTC 59.376 47.826 0.00 0.00 0.00 2.87
473 474 3.610911 GGGGACGATCAGTTCAATTCTT 58.389 45.455 0.00 0.00 0.00 2.52
474 475 2.092914 GGGGGACGATCAGTTCAATTCT 60.093 50.000 0.00 0.00 0.00 2.40
475 476 2.092914 AGGGGGACGATCAGTTCAATTC 60.093 50.000 0.00 0.00 0.00 2.17
476 477 1.916181 AGGGGGACGATCAGTTCAATT 59.084 47.619 0.00 0.00 0.00 2.32
477 478 1.486726 GAGGGGGACGATCAGTTCAAT 59.513 52.381 0.00 0.00 0.00 2.57
480 481 1.682323 GTAGAGGGGGACGATCAGTTC 59.318 57.143 0.00 0.00 0.00 3.01
481 482 1.688627 GGTAGAGGGGGACGATCAGTT 60.689 57.143 0.00 0.00 0.00 3.16
482 483 0.106116 GGTAGAGGGGGACGATCAGT 60.106 60.000 0.00 0.00 0.00 3.41
483 484 0.106167 TGGTAGAGGGGGACGATCAG 60.106 60.000 0.00 0.00 0.00 2.90
484 485 0.337082 TTGGTAGAGGGGGACGATCA 59.663 55.000 0.00 0.00 0.00 2.92
485 486 1.492764 TTTGGTAGAGGGGGACGATC 58.507 55.000 0.00 0.00 0.00 3.69
486 487 1.768870 CATTTGGTAGAGGGGGACGAT 59.231 52.381 0.00 0.00 0.00 3.73
487 488 1.200519 CATTTGGTAGAGGGGGACGA 58.799 55.000 0.00 0.00 0.00 4.20
488 489 0.463833 GCATTTGGTAGAGGGGGACG 60.464 60.000 0.00 0.00 0.00 4.79
489 490 0.106669 GGCATTTGGTAGAGGGGGAC 60.107 60.000 0.00 0.00 0.00 4.46
491 492 1.421646 CTAGGCATTTGGTAGAGGGGG 59.578 57.143 0.00 0.00 0.00 5.40
492 493 1.421646 CCTAGGCATTTGGTAGAGGGG 59.578 57.143 0.00 0.00 0.00 4.79
494 495 1.202818 GGCCTAGGCATTTGGTAGAGG 60.203 57.143 34.09 0.00 44.11 3.69
495 496 1.771255 AGGCCTAGGCATTTGGTAGAG 59.229 52.381 34.09 0.00 44.11 2.43
496 497 1.893315 AGGCCTAGGCATTTGGTAGA 58.107 50.000 34.09 0.00 44.11 2.59
497 498 2.438021 TGTAGGCCTAGGCATTTGGTAG 59.562 50.000 34.09 0.00 44.11 3.18
498 499 2.483547 TGTAGGCCTAGGCATTTGGTA 58.516 47.619 34.09 10.12 44.11 3.25
500 501 2.664402 ATGTAGGCCTAGGCATTTGG 57.336 50.000 34.09 0.00 44.11 3.28
501 502 3.825328 AGAATGTAGGCCTAGGCATTTG 58.175 45.455 34.09 0.00 44.11 2.32
502 503 4.526438 AAGAATGTAGGCCTAGGCATTT 57.474 40.909 34.09 19.30 44.11 2.32
503 504 5.132816 AGTTAAGAATGTAGGCCTAGGCATT 59.867 40.000 34.09 24.02 44.11 3.56
504 505 4.660771 AGTTAAGAATGTAGGCCTAGGCAT 59.339 41.667 34.09 30.31 44.11 4.40
505 506 4.037927 AGTTAAGAATGTAGGCCTAGGCA 58.962 43.478 34.09 15.23 44.11 4.75
506 507 4.101119 TGAGTTAAGAATGTAGGCCTAGGC 59.899 45.833 26.55 26.55 41.06 3.93
507 508 5.871396 TGAGTTAAGAATGTAGGCCTAGG 57.129 43.478 14.38 3.67 0.00 3.02
511 512 6.042208 AGGAGTATGAGTTAAGAATGTAGGCC 59.958 42.308 0.00 0.00 0.00 5.19
514 515 8.239038 TGGAGGAGTATGAGTTAAGAATGTAG 57.761 38.462 0.00 0.00 0.00 2.74
515 516 8.783660 ATGGAGGAGTATGAGTTAAGAATGTA 57.216 34.615 0.00 0.00 0.00 2.29
516 517 7.682787 ATGGAGGAGTATGAGTTAAGAATGT 57.317 36.000 0.00 0.00 0.00 2.71
517 518 8.970859 AAATGGAGGAGTATGAGTTAAGAATG 57.029 34.615 0.00 0.00 0.00 2.67
518 519 9.620259 GAAAATGGAGGAGTATGAGTTAAGAAT 57.380 33.333 0.00 0.00 0.00 2.40
519 520 8.602424 TGAAAATGGAGGAGTATGAGTTAAGAA 58.398 33.333 0.00 0.00 0.00 2.52
520 521 8.146053 TGAAAATGGAGGAGTATGAGTTAAGA 57.854 34.615 0.00 0.00 0.00 2.10
521 522 8.970859 ATGAAAATGGAGGAGTATGAGTTAAG 57.029 34.615 0.00 0.00 0.00 1.85
522 523 9.753674 AAATGAAAATGGAGGAGTATGAGTTAA 57.246 29.630 0.00 0.00 0.00 2.01
524 525 7.363268 GCAAATGAAAATGGAGGAGTATGAGTT 60.363 37.037 0.00 0.00 0.00 3.01
526 527 6.320672 AGCAAATGAAAATGGAGGAGTATGAG 59.679 38.462 0.00 0.00 0.00 2.90
527 528 6.189859 AGCAAATGAAAATGGAGGAGTATGA 58.810 36.000 0.00 0.00 0.00 2.15
528 529 6.461110 AGCAAATGAAAATGGAGGAGTATG 57.539 37.500 0.00 0.00 0.00 2.39
531 532 5.544650 CAAAGCAAATGAAAATGGAGGAGT 58.455 37.500 0.00 0.00 0.00 3.85
532 533 4.390909 GCAAAGCAAATGAAAATGGAGGAG 59.609 41.667 0.00 0.00 0.00 3.69
533 534 4.317488 GCAAAGCAAATGAAAATGGAGGA 58.683 39.130 0.00 0.00 0.00 3.71
534 535 3.123959 CGCAAAGCAAATGAAAATGGAGG 59.876 43.478 0.00 0.00 0.00 4.30
535 536 3.742369 ACGCAAAGCAAATGAAAATGGAG 59.258 39.130 0.00 0.00 0.00 3.86
536 537 3.726607 ACGCAAAGCAAATGAAAATGGA 58.273 36.364 0.00 0.00 0.00 3.41
537 538 5.783100 ATACGCAAAGCAAATGAAAATGG 57.217 34.783 0.00 0.00 0.00 3.16
538 539 7.952339 ACTAATACGCAAAGCAAATGAAAATG 58.048 30.769 0.00 0.00 0.00 2.32
540 541 7.938563 AACTAATACGCAAAGCAAATGAAAA 57.061 28.000 0.00 0.00 0.00 2.29
541 542 7.938563 AAACTAATACGCAAAGCAAATGAAA 57.061 28.000 0.00 0.00 0.00 2.69
542 543 7.938563 AAAACTAATACGCAAAGCAAATGAA 57.061 28.000 0.00 0.00 0.00 2.57
565 566 5.112686 CAACGTTTGATTTGAGGGGAAAAA 58.887 37.500 0.00 0.00 0.00 1.94
566 567 4.160626 ACAACGTTTGATTTGAGGGGAAAA 59.839 37.500 0.00 0.00 0.00 2.29
567 568 3.702045 ACAACGTTTGATTTGAGGGGAAA 59.298 39.130 0.00 0.00 0.00 3.13
568 569 3.292460 ACAACGTTTGATTTGAGGGGAA 58.708 40.909 0.00 0.00 0.00 3.97
569 570 2.938838 ACAACGTTTGATTTGAGGGGA 58.061 42.857 0.00 0.00 0.00 4.81
570 571 3.726291 AACAACGTTTGATTTGAGGGG 57.274 42.857 0.00 0.00 0.00 4.79
572 573 4.673311 CGGTTAACAACGTTTGATTTGAGG 59.327 41.667 8.10 0.00 0.00 3.86
573 574 5.170625 CACGGTTAACAACGTTTGATTTGAG 59.829 40.000 8.10 0.00 42.04 3.02
574 575 5.029014 CACGGTTAACAACGTTTGATTTGA 58.971 37.500 8.10 0.00 42.04 2.69
575 576 5.029014 TCACGGTTAACAACGTTTGATTTG 58.971 37.500 8.10 0.00 42.04 2.32
576 577 5.029654 GTCACGGTTAACAACGTTTGATTT 58.970 37.500 8.10 0.00 42.04 2.17
577 578 4.496175 GGTCACGGTTAACAACGTTTGATT 60.496 41.667 8.10 0.00 42.04 2.57
578 579 3.002553 GGTCACGGTTAACAACGTTTGAT 59.997 43.478 8.10 0.00 42.04 2.57
579 580 2.351111 GGTCACGGTTAACAACGTTTGA 59.649 45.455 8.10 0.00 42.04 2.69
580 581 2.095532 TGGTCACGGTTAACAACGTTTG 59.904 45.455 8.10 0.00 42.04 2.93
581 582 2.354259 TGGTCACGGTTAACAACGTTT 58.646 42.857 8.10 0.00 42.04 3.60
583 584 1.935199 CTTGGTCACGGTTAACAACGT 59.065 47.619 8.10 6.01 45.25 3.99
584 585 2.203401 TCTTGGTCACGGTTAACAACG 58.797 47.619 8.10 5.34 0.00 4.10
585 586 4.823790 AATCTTGGTCACGGTTAACAAC 57.176 40.909 8.10 0.00 0.00 3.32
586 587 7.546667 GTCTATAATCTTGGTCACGGTTAACAA 59.453 37.037 8.10 0.00 0.00 2.83
588 589 7.037438 TGTCTATAATCTTGGTCACGGTTAAC 58.963 38.462 0.00 0.00 0.00 2.01
591 592 5.670792 TGTCTATAATCTTGGTCACGGTT 57.329 39.130 0.00 0.00 0.00 4.44
592 593 5.871396 ATGTCTATAATCTTGGTCACGGT 57.129 39.130 0.00 0.00 0.00 4.83
593 594 6.157211 GGTATGTCTATAATCTTGGTCACGG 58.843 44.000 0.00 0.00 0.00 4.94
594 595 6.745116 TGGTATGTCTATAATCTTGGTCACG 58.255 40.000 0.00 0.00 0.00 4.35
737 738 8.773216 AGCCTGGAATTTAATACTCTCTTAGTT 58.227 33.333 0.00 0.00 39.80 2.24
738 739 8.325477 AGCCTGGAATTTAATACTCTCTTAGT 57.675 34.615 0.00 0.00 42.62 2.24
739 740 9.620259 AAAGCCTGGAATTTAATACTCTCTTAG 57.380 33.333 0.00 0.00 0.00 2.18
740 741 9.396022 CAAAGCCTGGAATTTAATACTCTCTTA 57.604 33.333 0.00 0.00 0.00 2.10
741 742 8.109634 TCAAAGCCTGGAATTTAATACTCTCTT 58.890 33.333 0.00 0.00 0.00 2.85
742 743 7.554476 GTCAAAGCCTGGAATTTAATACTCTCT 59.446 37.037 0.00 0.00 0.00 3.10
744 745 7.175104 TGTCAAAGCCTGGAATTTAATACTCT 58.825 34.615 0.00 0.00 0.00 3.24
746 747 7.775053 TTGTCAAAGCCTGGAATTTAATACT 57.225 32.000 0.00 0.00 0.00 2.12
747 748 8.825667 TTTTGTCAAAGCCTGGAATTTAATAC 57.174 30.769 0.00 0.00 0.00 1.89
748 749 8.646900 ACTTTTGTCAAAGCCTGGAATTTAATA 58.353 29.630 0.00 0.00 43.03 0.98
749 750 7.442062 CACTTTTGTCAAAGCCTGGAATTTAAT 59.558 33.333 0.00 0.00 43.03 1.40
750 751 6.760770 CACTTTTGTCAAAGCCTGGAATTTAA 59.239 34.615 0.00 0.00 43.03 1.52
751 752 6.127196 ACACTTTTGTCAAAGCCTGGAATTTA 60.127 34.615 0.00 0.00 43.03 1.40
752 753 5.118286 CACTTTTGTCAAAGCCTGGAATTT 58.882 37.500 0.00 0.00 43.03 1.82
753 754 4.162131 ACACTTTTGTCAAAGCCTGGAATT 59.838 37.500 0.00 0.00 43.03 2.17
755 756 3.096092 ACACTTTTGTCAAAGCCTGGAA 58.904 40.909 0.00 0.00 43.03 3.53
756 757 2.733956 ACACTTTTGTCAAAGCCTGGA 58.266 42.857 0.00 0.00 43.03 3.86
757 758 3.525268 AACACTTTTGTCAAAGCCTGG 57.475 42.857 0.00 0.00 43.03 4.45
758 759 4.044426 GCTAACACTTTTGTCAAAGCCTG 58.956 43.478 0.00 0.00 43.03 4.85
760 761 3.181480 TGGCTAACACTTTTGTCAAAGCC 60.181 43.478 13.16 13.16 46.55 4.35
762 763 5.004345 CGTTTGGCTAACACTTTTGTCAAAG 59.996 40.000 12.10 0.00 40.92 2.77
763 764 4.859798 CGTTTGGCTAACACTTTTGTCAAA 59.140 37.500 12.10 0.00 38.96 2.69
765 766 3.440872 ACGTTTGGCTAACACTTTTGTCA 59.559 39.130 12.10 0.00 36.50 3.58
766 767 3.789224 CACGTTTGGCTAACACTTTTGTC 59.211 43.478 12.10 0.00 36.50 3.18
768 769 3.112580 CCACGTTTGGCTAACACTTTTG 58.887 45.455 12.10 0.00 35.56 2.44
769 770 2.100087 CCCACGTTTGGCTAACACTTTT 59.900 45.455 12.10 0.00 42.35 2.27
770 771 1.679153 CCCACGTTTGGCTAACACTTT 59.321 47.619 12.10 0.00 42.35 2.66
771 772 1.314730 CCCACGTTTGGCTAACACTT 58.685 50.000 12.10 0.00 42.35 3.16
773 774 1.284715 GCCCACGTTTGGCTAACAC 59.715 57.895 16.75 0.00 45.70 3.32
774 775 3.752704 GCCCACGTTTGGCTAACA 58.247 55.556 16.75 0.00 45.70 2.41
780 781 4.776795 AAAATTACTAGCCCACGTTTGG 57.223 40.909 0.00 0.00 43.50 3.28
781 782 8.643752 CAAATAAAAATTACTAGCCCACGTTTG 58.356 33.333 0.00 0.00 0.00 2.93
782 783 8.578151 TCAAATAAAAATTACTAGCCCACGTTT 58.422 29.630 0.00 0.00 0.00 3.60
784 785 7.148137 CCTCAAATAAAAATTACTAGCCCACGT 60.148 37.037 0.00 0.00 0.00 4.49
785 786 7.193595 CCTCAAATAAAAATTACTAGCCCACG 58.806 38.462 0.00 0.00 0.00 4.94
786 787 7.417456 CCCCTCAAATAAAAATTACTAGCCCAC 60.417 40.741 0.00 0.00 0.00 4.61
789 790 7.655521 ACCCCTCAAATAAAAATTACTAGCC 57.344 36.000 0.00 0.00 0.00 3.93
790 791 8.195436 GGAACCCCTCAAATAAAAATTACTAGC 58.805 37.037 0.00 0.00 0.00 3.42
791 792 9.250246 TGGAACCCCTCAAATAAAAATTACTAG 57.750 33.333 0.00 0.00 0.00 2.57
792 793 9.603189 TTGGAACCCCTCAAATAAAAATTACTA 57.397 29.630 0.00 0.00 0.00 1.82
794 795 9.733556 ATTTGGAACCCCTCAAATAAAAATTAC 57.266 29.630 0.00 0.00 40.50 1.89
795 796 9.732130 CATTTGGAACCCCTCAAATAAAAATTA 57.268 29.630 0.00 0.00 40.37 1.40
796 797 8.224025 ACATTTGGAACCCCTCAAATAAAAATT 58.776 29.630 0.00 0.00 40.37 1.82
799 800 6.529220 CACATTTGGAACCCCTCAAATAAAA 58.471 36.000 0.00 0.00 40.37 1.52
801 802 5.736951 CACATTTGGAACCCCTCAAATAA 57.263 39.130 0.00 0.00 40.37 1.40
818 819 0.475632 TCTCCCCAGTCCACCACATT 60.476 55.000 0.00 0.00 0.00 2.71
820 821 1.160870 ATCTCCCCAGTCCACCACA 59.839 57.895 0.00 0.00 0.00 4.17
821 822 1.604378 CATCTCCCCAGTCCACCAC 59.396 63.158 0.00 0.00 0.00 4.16
822 823 2.300967 GCATCTCCCCAGTCCACCA 61.301 63.158 0.00 0.00 0.00 4.17
823 824 1.566298 AAGCATCTCCCCAGTCCACC 61.566 60.000 0.00 0.00 0.00 4.61
825 826 1.075601 AAAAGCATCTCCCCAGTCCA 58.924 50.000 0.00 0.00 0.00 4.02
826 827 1.467920 CAAAAGCATCTCCCCAGTCC 58.532 55.000 0.00 0.00 0.00 3.85
827 828 0.813821 GCAAAAGCATCTCCCCAGTC 59.186 55.000 0.00 0.00 0.00 3.51
828 829 0.112995 TGCAAAAGCATCTCCCCAGT 59.887 50.000 0.00 0.00 0.00 4.00
829 830 1.203994 CTTGCAAAAGCATCTCCCCAG 59.796 52.381 0.00 0.00 0.00 4.45
830 831 1.259609 CTTGCAAAAGCATCTCCCCA 58.740 50.000 0.00 0.00 0.00 4.96
831 832 1.260544 ACTTGCAAAAGCATCTCCCC 58.739 50.000 0.00 0.00 0.00 4.81
832 833 2.424956 CCTACTTGCAAAAGCATCTCCC 59.575 50.000 0.00 0.00 0.00 4.30
840 841 1.808411 TCTCGGCCTACTTGCAAAAG 58.192 50.000 0.00 0.72 0.00 2.27
844 845 0.747255 GAGATCTCGGCCTACTTGCA 59.253 55.000 7.04 0.00 0.00 4.08
851 852 0.324738 TCAACTGGAGATCTCGGCCT 60.325 55.000 16.46 0.00 0.00 5.19
882 883 2.223611 CACAGAAGAGAAGCAAGCACAG 59.776 50.000 0.00 0.00 0.00 3.66
921 931 1.425448 GGTGGGGATATTTCCAGAGGG 59.575 57.143 4.48 0.00 44.60 4.30
922 932 1.425448 GGGTGGGGATATTTCCAGAGG 59.575 57.143 4.48 0.00 44.60 3.69
923 933 1.072331 CGGGTGGGGATATTTCCAGAG 59.928 57.143 4.48 0.00 44.60 3.35
924 934 1.136828 CGGGTGGGGATATTTCCAGA 58.863 55.000 4.48 0.00 44.60 3.86
925 935 0.537371 GCGGGTGGGGATATTTCCAG 60.537 60.000 4.48 0.00 44.60 3.86
928 938 2.258726 GCGCGGGTGGGGATATTTC 61.259 63.158 8.83 0.00 0.00 2.17
930 940 4.265056 GGCGCGGGTGGGGATATT 62.265 66.667 8.83 0.00 0.00 1.28
1387 3535 4.847516 CGGCACCGATTCGAGCGA 62.848 66.667 7.83 0.00 42.83 4.93
1483 3643 0.249447 TCGATATGTGAAGCGGCCAG 60.249 55.000 2.24 0.00 0.00 4.85
1491 3651 0.529773 GCGGCACCTCGATATGTGAA 60.530 55.000 12.45 0.00 34.37 3.18
1492 3652 1.067416 GCGGCACCTCGATATGTGA 59.933 57.895 12.45 0.00 34.37 3.58
1514 3674 1.899437 GAGGTGGTTCGGCAGATCCA 61.899 60.000 12.03 12.03 42.31 3.41
1518 3678 1.118965 TTCTGAGGTGGTTCGGCAGA 61.119 55.000 0.00 0.00 34.11 4.26
1527 3687 1.202806 TCCAGCAACTTTCTGAGGTGG 60.203 52.381 0.00 0.00 43.62 4.61
1551 3711 3.172339 AGTCACATCTGCTCCTCTCTTT 58.828 45.455 0.00 0.00 0.00 2.52
1680 3849 6.978674 TCCTCGATGATTATGTTCCTACTT 57.021 37.500 0.00 0.00 0.00 2.24
1685 3857 6.878317 TCCATATCCTCGATGATTATGTTCC 58.122 40.000 8.55 0.00 0.00 3.62
1701 3873 3.296854 GAAAACAGGGGGTTCCATATCC 58.703 50.000 0.00 0.00 39.29 2.59
1704 3876 2.042433 CCTGAAAACAGGGGGTTCCATA 59.958 50.000 8.23 0.00 39.29 2.74
1761 3936 3.777106 TCATCAAGGTCATCCATAGCC 57.223 47.619 0.00 0.00 35.89 3.93
2036 4211 5.708697 TCAAAGACATCAAACATGAGAGCAT 59.291 36.000 0.00 0.00 34.29 3.79
2090 4265 5.933617 TGAGGCATAACTCAAGATTAGCAT 58.066 37.500 0.00 0.00 44.03 3.79
2107 4298 7.500892 TCAACTAAACTGACTATTTTTGAGGCA 59.499 33.333 0.00 0.00 0.00 4.75
2117 4308 6.920817 TCGACATGTCAACTAAACTGACTAT 58.079 36.000 24.93 0.00 43.03 2.12
2139 4330 6.494893 TTCAGGTAAACCTTTGATGAATCG 57.505 37.500 0.00 0.00 46.09 3.34
2141 4332 8.421249 TCATTTCAGGTAAACCTTTGATGAAT 57.579 30.769 0.00 0.00 46.09 2.57
2142 4333 7.831691 TCATTTCAGGTAAACCTTTGATGAA 57.168 32.000 0.00 0.00 46.09 2.57
2143 4334 7.505585 AGTTCATTTCAGGTAAACCTTTGATGA 59.494 33.333 0.00 6.48 46.09 2.92
2144 4335 7.661040 AGTTCATTTCAGGTAAACCTTTGATG 58.339 34.615 0.00 4.34 46.09 3.07
2145 4336 7.839680 AGTTCATTTCAGGTAAACCTTTGAT 57.160 32.000 0.00 0.00 46.09 2.57
2146 4337 7.996644 ACTAGTTCATTTCAGGTAAACCTTTGA 59.003 33.333 0.00 0.00 46.09 2.69
2147 4338 8.166422 ACTAGTTCATTTCAGGTAAACCTTTG 57.834 34.615 0.00 0.00 46.09 2.77
2148 4339 8.762481 AACTAGTTCATTTCAGGTAAACCTTT 57.238 30.769 1.12 0.00 46.09 3.11
2149 4340 8.762481 AAACTAGTTCATTTCAGGTAAACCTT 57.238 30.769 8.95 0.00 46.09 3.50
2150 4341 8.218488 AGAAACTAGTTCATTTCAGGTAAACCT 58.782 33.333 8.95 0.00 42.40 3.50
2151 4342 8.392372 AGAAACTAGTTCATTTCAGGTAAACC 57.608 34.615 8.95 0.00 38.86 3.27
2181 4372 4.032960 ACCCAACATCAGCATAACTCAA 57.967 40.909 0.00 0.00 0.00 3.02
2183 4374 5.648092 AGTTAACCCAACATCAGCATAACTC 59.352 40.000 0.88 0.00 39.81 3.01
2184 4375 5.570320 AGTTAACCCAACATCAGCATAACT 58.430 37.500 0.88 0.00 39.81 2.24
2185 4376 5.897377 AGTTAACCCAACATCAGCATAAC 57.103 39.130 0.88 0.00 39.81 1.89
2186 4377 6.150976 CAGAAGTTAACCCAACATCAGCATAA 59.849 38.462 0.88 0.00 37.33 1.90
2193 4465 5.123979 GTCATCCAGAAGTTAACCCAACATC 59.876 44.000 0.88 0.00 39.81 3.06
2251 4528 3.189287 CAGTACATCTTGCAAGACCAACC 59.811 47.826 30.66 16.96 37.98 3.77
2629 4958 3.471680 GTTATGAGTTCCTCTGATGGCC 58.528 50.000 0.00 0.00 0.00 5.36
2648 4977 2.419739 AACAAAACCGCCAGCCGTT 61.420 52.632 0.00 0.00 34.38 4.44
2654 4983 1.405661 GGAAAACCAACAAAACCGCCA 60.406 47.619 0.00 0.00 0.00 5.69
2702 5031 6.889722 ACCAGCTTATTATGCTTACCTTCAAA 59.110 34.615 1.52 0.00 38.92 2.69
2703 5032 6.318648 CACCAGCTTATTATGCTTACCTTCAA 59.681 38.462 1.52 0.00 38.92 2.69
2752 5081 9.401058 AGTGCAGCAGATAATTAAGAAAACTAT 57.599 29.630 0.00 0.00 0.00 2.12
2815 5144 4.351111 ACATTTTGGAGGACAGTAAGGAGT 59.649 41.667 0.00 0.00 0.00 3.85
2825 5154 2.749621 CCACTAGCACATTTTGGAGGAC 59.250 50.000 0.00 0.00 0.00 3.85
2893 5222 1.904144 CACTGCCAATCTGCATTTCG 58.096 50.000 0.00 0.00 41.16 3.46
2903 5232 3.674138 CGCTAGAATTTTGCACTGCCAAT 60.674 43.478 0.00 0.00 0.00 3.16
2928 5257 3.996150 TCGGTTACCTAGCTAATTCGG 57.004 47.619 0.00 0.00 0.00 4.30
2944 5274 1.135746 GTTCGAAGACAGACGATCGGT 60.136 52.381 20.98 7.70 38.30 4.69
2951 5281 2.728839 CAGCAAGAGTTCGAAGACAGAC 59.271 50.000 0.00 0.00 34.32 3.51
2957 5287 0.514691 GGCACAGCAAGAGTTCGAAG 59.485 55.000 0.00 0.00 0.00 3.79
2960 5290 0.882042 ACAGGCACAGCAAGAGTTCG 60.882 55.000 0.00 0.00 0.00 3.95
2962 5292 1.027357 CAACAGGCACAGCAAGAGTT 58.973 50.000 0.00 0.00 0.00 3.01
3018 5348 7.206687 TGTATATGCTATGATCACACGAAACA 58.793 34.615 0.00 0.00 0.00 2.83
3042 5379 5.163764 ACAACTTACACGGAACATATGCATG 60.164 40.000 10.16 0.00 38.21 4.06
3049 5386 4.562143 GGGAGTACAACTTACACGGAACAT 60.562 45.833 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.