Multiple sequence alignment - TraesCS3B01G025800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G025800 chr3B 100.000 3149 0 0 1 3149 11127485 11130633 0.000000e+00 5816.0
1 TraesCS3B01G025800 chr3B 92.151 1325 81 12 1412 2725 11224923 11226235 0.000000e+00 1849.0
2 TraesCS3B01G025800 chr3B 87.891 479 52 4 2257 2735 809344721 809344249 2.740000e-155 558.0
3 TraesCS3B01G025800 chr3B 89.647 425 34 7 2727 3149 736441126 736440710 1.660000e-147 532.0
4 TraesCS3B01G025800 chr3B 86.493 422 56 1 2728 3149 827543161 827543581 2.210000e-126 462.0
5 TraesCS3B01G025800 chr3B 86.256 422 57 1 2728 3149 826997549 826997969 1.030000e-124 457.0
6 TraesCS3B01G025800 chr3D 93.833 1800 80 6 943 2728 9072123 9073905 0.000000e+00 2680.0
7 TraesCS3B01G025800 chr3D 96.288 943 23 5 1 943 9068475 9069405 0.000000e+00 1537.0
8 TraesCS3B01G025800 chr3D 98.667 75 1 0 948 1022 9099233 9099159 1.970000e-27 134.0
9 TraesCS3B01G025800 chr3A 93.360 1521 82 8 948 2451 11904684 11903166 0.000000e+00 2231.0
10 TraesCS3B01G025800 chr3A 88.477 486 52 3 2243 2728 730911707 730912188 4.530000e-163 584.0
11 TraesCS3B01G025800 chr3A 89.953 428 35 5 2728 3149 742241480 742241055 2.140000e-151 545.0
12 TraesCS3B01G025800 chr3A 89.199 287 25 4 2449 2735 11902094 11901814 1.390000e-93 353.0
13 TraesCS3B01G025800 chr3A 86.742 264 22 8 687 943 11904976 11904719 6.650000e-72 281.0
14 TraesCS3B01G025800 chr3A 92.135 178 12 2 24 201 11915099 11914924 1.880000e-62 250.0
15 TraesCS3B01G025800 chr2D 90.888 428 35 4 2725 3149 359436893 359437319 3.520000e-159 571.0
16 TraesCS3B01G025800 chr2A 89.302 430 32 9 2728 3149 142681065 142680642 7.740000e-146 527.0
17 TraesCS3B01G025800 chr2A 91.111 45 1 2 627 671 333732711 333732752 1.220000e-04 58.4
18 TraesCS3B01G025800 chr2A 100.000 28 0 0 645 672 711980342 711980315 6.000000e-03 52.8
19 TraesCS3B01G025800 chr7B 88.599 421 46 2 2728 3148 11325246 11325664 7.790000e-141 510.0
20 TraesCS3B01G025800 chr7B 90.909 44 4 0 627 670 705594467 705594424 3.390000e-05 60.2
21 TraesCS3B01G025800 chr5D 87.972 424 48 3 2728 3149 144195496 144195074 6.070000e-137 497.0
22 TraesCS3B01G025800 chr5D 87.822 427 40 7 2728 3144 144223198 144222774 1.010000e-134 490.0
23 TraesCS3B01G025800 chr6A 89.031 392 36 6 2762 3149 8626662 8627050 2.200000e-131 479.0
24 TraesCS3B01G025800 chr7D 86.441 177 22 2 4 180 53991385 53991559 3.210000e-45 193.0
25 TraesCS3B01G025800 chr4A 83.673 196 27 4 1 193 669675414 669675607 2.500000e-41 180.0
26 TraesCS3B01G025800 chr4A 96.875 32 0 1 645 676 57517817 57517787 6.000000e-03 52.8
27 TraesCS3B01G025800 chr4D 80.676 207 32 3 1 200 455915117 455915322 1.510000e-33 154.0
28 TraesCS3B01G025800 chr4D 100.000 29 0 0 645 673 9338740 9338712 2.000000e-03 54.7
29 TraesCS3B01G025800 chr2B 100.000 28 0 0 645 672 688463103 688463076 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G025800 chr3B 11127485 11130633 3148 False 5816.0 5816 100.0000 1 3149 1 chr3B.!!$F1 3148
1 TraesCS3B01G025800 chr3B 11224923 11226235 1312 False 1849.0 1849 92.1510 1412 2725 1 chr3B.!!$F2 1313
2 TraesCS3B01G025800 chr3D 9068475 9073905 5430 False 2108.5 2680 95.0605 1 2728 2 chr3D.!!$F1 2727
3 TraesCS3B01G025800 chr3A 11901814 11904976 3162 True 955.0 2231 89.7670 687 2735 3 chr3A.!!$R3 2048

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 173 0.394216 CCGCCAATCATCAGGTCCAA 60.394 55.0 0.0 0.0 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2170 4919 0.802494 ACTAAATGCGGACTTTGGCG 59.198 50.0 0.0 0.0 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 129 1.957177 TCATCGGATTCTTCCTCGAGG 59.043 52.381 26.32 26.32 40.17 4.63
131 132 2.295885 TCGGATTCTTCCTCGAGGTAC 58.704 52.381 30.17 11.25 40.17 3.34
172 173 0.394216 CCGCCAATCATCAGGTCCAA 60.394 55.000 0.00 0.00 0.00 3.53
282 283 1.275421 GGGAGGAGGAGGTGGAAAGG 61.275 65.000 0.00 0.00 0.00 3.11
286 287 1.492993 GGAGGAGGTGGAAAGGCTGT 61.493 60.000 0.00 0.00 0.00 4.40
414 415 3.338250 TGGGGTGAGTGGATGGGC 61.338 66.667 0.00 0.00 0.00 5.36
448 449 4.740822 GGCGTGGATTGGGTGGCT 62.741 66.667 0.00 0.00 0.00 4.75
466 467 2.124983 GCGGCAGAGGATTGAGCA 60.125 61.111 0.00 0.00 0.00 4.26
548 549 4.610605 TTACTTCTCCGTCATTGTTCCA 57.389 40.909 0.00 0.00 0.00 3.53
602 603 4.464597 GGAGATCAGCTAGGTCCGATTTAT 59.535 45.833 0.00 0.00 0.00 1.40
603 604 5.652891 GGAGATCAGCTAGGTCCGATTTATA 59.347 44.000 0.00 0.00 0.00 0.98
604 605 6.404954 GGAGATCAGCTAGGTCCGATTTATAC 60.405 46.154 0.00 0.00 0.00 1.47
605 606 6.249951 AGATCAGCTAGGTCCGATTTATACT 58.750 40.000 0.00 0.00 0.00 2.12
606 607 7.403671 AGATCAGCTAGGTCCGATTTATACTA 58.596 38.462 0.00 0.00 0.00 1.82
607 608 7.554835 AGATCAGCTAGGTCCGATTTATACTAG 59.445 40.741 0.00 0.00 0.00 2.57
634 635 7.122048 ACTAGTATACCGGAACTTTTACTCCT 58.878 38.462 9.46 0.00 0.00 3.69
636 637 6.193504 AGTATACCGGAACTTTTACTCCTCT 58.806 40.000 9.46 0.00 0.00 3.69
637 638 7.349598 AGTATACCGGAACTTTTACTCCTCTA 58.650 38.462 9.46 0.00 0.00 2.43
638 639 7.836183 AGTATACCGGAACTTTTACTCCTCTAA 59.164 37.037 9.46 0.00 0.00 2.10
639 640 5.144692 ACCGGAACTTTTACTCCTCTAAC 57.855 43.478 9.46 0.00 0.00 2.34
640 641 4.020751 ACCGGAACTTTTACTCCTCTAACC 60.021 45.833 9.46 0.00 0.00 2.85
641 642 4.020839 CCGGAACTTTTACTCCTCTAACCA 60.021 45.833 0.00 0.00 0.00 3.67
850 853 0.759346 GCCCATAGAGTCACCCGATT 59.241 55.000 0.00 0.00 0.00 3.34
862 865 2.093181 TCACCCGATTGACGATCCATTT 60.093 45.455 0.00 0.00 45.77 2.32
1014 3745 3.518003 GCCATGGGCTGTGTCATC 58.482 61.111 15.13 0.00 46.69 2.92
1027 3758 1.039785 TGTCATCTCCAGCTCCTCCG 61.040 60.000 0.00 0.00 0.00 4.63
1032 3763 4.722535 TCCAGCTCCTCCGCCCTT 62.723 66.667 0.00 0.00 0.00 3.95
1200 3935 4.729856 GGCCGTCGCTGGTACGTT 62.730 66.667 0.00 0.00 38.67 3.99
1221 3956 2.364579 TTCTACCCCGACGGCCAT 60.365 61.111 8.86 0.00 33.26 4.40
1272 4007 3.068691 CTCTTCCTCGTCCCGGCA 61.069 66.667 0.00 0.00 0.00 5.69
1599 4334 2.364842 GGCCAGCTCCTCTCCTCA 60.365 66.667 0.00 0.00 0.00 3.86
2121 4856 3.737172 CTTGCTCGCAAACCCCCG 61.737 66.667 5.77 0.00 35.33 5.73
2210 4959 3.244814 GTGATCAACTGATGTCGATGAGC 59.755 47.826 0.00 0.00 34.37 4.26
2236 4987 4.202182 GCACATGATGGCCAAAGAATGTAT 60.202 41.667 10.96 0.00 0.00 2.29
2270 5030 1.723608 TTTGCTTGGTCACGGTGCAG 61.724 55.000 2.51 0.00 35.02 4.41
2378 5138 4.954202 TGATCTAGGTATCACCGAGTTTGT 59.046 41.667 5.53 0.00 44.90 2.83
2388 5148 2.852413 CACCGAGTTTGTAGCTGATACG 59.148 50.000 0.00 0.00 37.17 3.06
2396 5156 8.628279 CGAGTTTGTAGCTGATACGTTATTATC 58.372 37.037 0.00 0.00 37.17 1.75
2412 5172 8.804743 ACGTTATTATCAAATTACACGACTCAG 58.195 33.333 0.00 0.00 31.42 3.35
2477 6311 7.234371 AGCTTTGTGCCTATCTCTATCATTCTA 59.766 37.037 0.00 0.00 44.23 2.10
2478 6312 8.040132 GCTTTGTGCCTATCTCTATCATTCTAT 58.960 37.037 0.00 0.00 35.15 1.98
2499 6333 6.988580 TCTATTATGTGTCATCCTTTCAGCTG 59.011 38.462 7.63 7.63 0.00 4.24
2634 6468 2.930682 GTTGTACTGATTCCTCTTCGCC 59.069 50.000 0.00 0.00 0.00 5.54
2642 6476 5.598830 ACTGATTCCTCTTCGCCTAAAGATA 59.401 40.000 0.00 0.00 34.85 1.98
2643 6477 6.268847 ACTGATTCCTCTTCGCCTAAAGATAT 59.731 38.462 0.00 0.00 34.85 1.63
2715 6549 0.394938 TTTGTACGGAGCTTCTGGCA 59.605 50.000 0.00 0.00 44.79 4.92
2728 6562 0.473755 TCTGGCAGAAGGTCTTTGCA 59.526 50.000 16.28 0.00 39.54 4.08
2729 6563 0.595095 CTGGCAGAAGGTCTTTGCAC 59.405 55.000 9.42 8.42 39.54 4.57
2730 6564 0.183492 TGGCAGAAGGTCTTTGCACT 59.817 50.000 14.67 0.00 39.54 4.40
2731 6565 1.419762 TGGCAGAAGGTCTTTGCACTA 59.580 47.619 14.67 0.00 39.54 2.74
2732 6566 2.079925 GGCAGAAGGTCTTTGCACTAG 58.920 52.381 14.67 0.00 39.54 2.57
2733 6567 2.551071 GGCAGAAGGTCTTTGCACTAGT 60.551 50.000 14.67 0.00 39.54 2.57
2734 6568 3.306780 GGCAGAAGGTCTTTGCACTAGTA 60.307 47.826 0.00 0.00 39.54 1.82
2735 6569 3.929610 GCAGAAGGTCTTTGCACTAGTAG 59.070 47.826 0.00 0.00 37.75 2.57
2736 6570 4.322049 GCAGAAGGTCTTTGCACTAGTAGA 60.322 45.833 3.59 0.00 37.75 2.59
2737 6571 5.784177 CAGAAGGTCTTTGCACTAGTAGAA 58.216 41.667 3.59 0.00 0.00 2.10
2738 6572 6.223852 CAGAAGGTCTTTGCACTAGTAGAAA 58.776 40.000 3.59 0.00 0.00 2.52
2739 6573 6.706270 CAGAAGGTCTTTGCACTAGTAGAAAA 59.294 38.462 3.59 0.00 0.00 2.29
2740 6574 7.226720 CAGAAGGTCTTTGCACTAGTAGAAAAA 59.773 37.037 3.59 1.01 0.00 1.94
2741 6575 7.939588 AGAAGGTCTTTGCACTAGTAGAAAAAT 59.060 33.333 3.59 0.00 0.00 1.82
2742 6576 7.440523 AGGTCTTTGCACTAGTAGAAAAATG 57.559 36.000 3.59 0.00 0.00 2.32
2743 6577 7.224297 AGGTCTTTGCACTAGTAGAAAAATGA 58.776 34.615 3.59 0.65 0.00 2.57
2744 6578 7.173390 AGGTCTTTGCACTAGTAGAAAAATGAC 59.827 37.037 3.59 11.00 0.00 3.06
2745 6579 7.173390 GGTCTTTGCACTAGTAGAAAAATGACT 59.827 37.037 3.59 0.00 0.00 3.41
2746 6580 8.560374 GTCTTTGCACTAGTAGAAAAATGACTT 58.440 33.333 3.59 0.00 0.00 3.01
2747 6581 9.120538 TCTTTGCACTAGTAGAAAAATGACTTT 57.879 29.630 3.59 0.00 0.00 2.66
2748 6582 9.736023 CTTTGCACTAGTAGAAAAATGACTTTT 57.264 29.630 3.59 0.00 40.03 2.27
2751 6585 9.555727 TGCACTAGTAGAAAAATGACTTTTAGT 57.444 29.630 3.59 0.00 37.36 2.24
2756 6590 8.543862 AGTAGAAAAATGACTTTTAGTACCGG 57.456 34.615 0.00 0.00 37.36 5.28
2757 6591 8.152898 AGTAGAAAAATGACTTTTAGTACCGGT 58.847 33.333 13.98 13.98 37.36 5.28
2758 6592 7.812690 AGAAAAATGACTTTTAGTACCGGTT 57.187 32.000 15.04 0.00 37.36 4.44
2759 6593 7.868775 AGAAAAATGACTTTTAGTACCGGTTC 58.131 34.615 15.04 8.12 37.36 3.62
2760 6594 5.851047 AAATGACTTTTAGTACCGGTTCG 57.149 39.130 15.04 0.00 0.00 3.95
2761 6595 4.525912 ATGACTTTTAGTACCGGTTCGT 57.474 40.909 15.04 0.00 0.00 3.85
2762 6596 5.643379 ATGACTTTTAGTACCGGTTCGTA 57.357 39.130 15.04 0.00 0.00 3.43
2763 6597 5.446143 TGACTTTTAGTACCGGTTCGTAA 57.554 39.130 15.04 5.59 0.00 3.18
2764 6598 5.460646 TGACTTTTAGTACCGGTTCGTAAG 58.539 41.667 15.04 15.61 0.00 2.34
2765 6599 4.809673 ACTTTTAGTACCGGTTCGTAAGG 58.190 43.478 15.04 10.37 38.47 2.69
2766 6600 4.522789 ACTTTTAGTACCGGTTCGTAAGGA 59.477 41.667 15.04 0.00 38.47 3.36
2778 6612 4.415735 GTTCGTAAGGACCTTTAGTACCG 58.584 47.826 13.11 6.00 41.18 4.02
2779 6613 3.016736 TCGTAAGGACCTTTAGTACCGG 58.983 50.000 13.11 0.00 38.47 5.28
2780 6614 2.755103 CGTAAGGACCTTTAGTACCGGT 59.245 50.000 13.98 13.98 0.00 5.28
2781 6615 3.193479 CGTAAGGACCTTTAGTACCGGTT 59.807 47.826 15.04 0.00 0.00 4.44
2782 6616 4.321974 CGTAAGGACCTTTAGTACCGGTTT 60.322 45.833 15.04 4.12 0.00 3.27
2783 6617 4.712051 AAGGACCTTTAGTACCGGTTTT 57.288 40.909 15.04 3.67 0.00 2.43
2784 6618 4.011966 AGGACCTTTAGTACCGGTTTTG 57.988 45.455 15.04 0.00 0.00 2.44
2785 6619 3.076621 GGACCTTTAGTACCGGTTTTGG 58.923 50.000 15.04 9.72 0.00 3.28
2786 6620 3.244526 GGACCTTTAGTACCGGTTTTGGA 60.245 47.826 15.04 0.00 0.00 3.53
2787 6621 4.388485 GACCTTTAGTACCGGTTTTGGAA 58.612 43.478 15.04 0.90 0.00 3.53
2788 6622 4.790937 ACCTTTAGTACCGGTTTTGGAAA 58.209 39.130 15.04 6.05 0.00 3.13
2789 6623 4.580167 ACCTTTAGTACCGGTTTTGGAAAC 59.420 41.667 15.04 1.99 0.00 2.78
2790 6624 4.022935 CCTTTAGTACCGGTTTTGGAAACC 60.023 45.833 15.04 11.61 36.96 3.27
2795 6629 4.742274 GGTTTTGGAAACCGGCAC 57.258 55.556 0.00 0.00 0.00 5.01
2796 6630 2.120765 GGTTTTGGAAACCGGCACT 58.879 52.632 0.00 0.00 0.00 4.40
2797 6631 1.320507 GGTTTTGGAAACCGGCACTA 58.679 50.000 0.00 0.00 0.00 2.74
2798 6632 1.268625 GGTTTTGGAAACCGGCACTAG 59.731 52.381 0.00 0.00 0.00 2.57
2799 6633 2.223745 GTTTTGGAAACCGGCACTAGA 58.776 47.619 0.00 0.00 0.00 2.43
2800 6634 2.178912 TTTGGAAACCGGCACTAGAG 57.821 50.000 0.00 0.00 0.00 2.43
2801 6635 0.323629 TTGGAAACCGGCACTAGAGG 59.676 55.000 0.00 0.00 0.00 3.69
2802 6636 1.221021 GGAAACCGGCACTAGAGGG 59.779 63.158 0.00 0.00 0.00 4.30
2803 6637 1.551019 GGAAACCGGCACTAGAGGGT 61.551 60.000 0.00 0.00 0.00 4.34
2804 6638 0.391263 GAAACCGGCACTAGAGGGTG 60.391 60.000 0.00 0.00 39.91 4.61
2805 6639 1.838073 AAACCGGCACTAGAGGGTGG 61.838 60.000 0.00 0.00 37.65 4.61
2806 6640 3.470888 CCGGCACTAGAGGGTGGG 61.471 72.222 0.00 0.00 37.65 4.61
2807 6641 3.470888 CGGCACTAGAGGGTGGGG 61.471 72.222 0.00 0.00 37.65 4.96
2808 6642 2.040606 GGCACTAGAGGGTGGGGA 59.959 66.667 0.00 0.00 37.65 4.81
2809 6643 2.368011 GGCACTAGAGGGTGGGGAC 61.368 68.421 0.00 0.00 37.65 4.46
2810 6644 1.306226 GCACTAGAGGGTGGGGACT 60.306 63.158 0.00 0.00 37.65 3.85
2811 6645 0.032416 GCACTAGAGGGTGGGGACTA 60.032 60.000 0.00 0.00 37.65 2.59
2812 6646 1.621622 GCACTAGAGGGTGGGGACTAA 60.622 57.143 0.00 0.00 37.65 2.24
2813 6647 2.829023 CACTAGAGGGTGGGGACTAAA 58.171 52.381 0.00 0.00 33.95 1.85
2814 6648 2.766828 CACTAGAGGGTGGGGACTAAAG 59.233 54.545 0.00 0.00 33.95 1.85
2815 6649 2.292984 ACTAGAGGGTGGGGACTAAAGG 60.293 54.545 0.00 0.00 0.00 3.11
2816 6650 0.496841 AGAGGGTGGGGACTAAAGGT 59.503 55.000 0.00 0.00 0.00 3.50
2817 6651 0.910338 GAGGGTGGGGACTAAAGGTC 59.090 60.000 0.00 0.00 43.79 3.85
2830 6664 4.757019 CTAAAGGTCCCCTCTTTAGTCC 57.243 50.000 12.74 0.00 43.97 3.85
2831 6665 1.968278 AAGGTCCCCTCTTTAGTCCC 58.032 55.000 0.00 0.00 30.89 4.46
2832 6666 0.797579 AGGTCCCCTCTTTAGTCCCA 59.202 55.000 0.00 0.00 0.00 4.37
2833 6667 1.153565 AGGTCCCCTCTTTAGTCCCAA 59.846 52.381 0.00 0.00 0.00 4.12
2834 6668 2.206223 GGTCCCCTCTTTAGTCCCAAT 58.794 52.381 0.00 0.00 0.00 3.16
2835 6669 2.581246 GGTCCCCTCTTTAGTCCCAATT 59.419 50.000 0.00 0.00 0.00 2.32
2836 6670 3.371702 GGTCCCCTCTTTAGTCCCAATTC 60.372 52.174 0.00 0.00 0.00 2.17
2837 6671 3.265995 GTCCCCTCTTTAGTCCCAATTCA 59.734 47.826 0.00 0.00 0.00 2.57
2838 6672 3.920197 TCCCCTCTTTAGTCCCAATTCAA 59.080 43.478 0.00 0.00 0.00 2.69
2839 6673 4.017126 CCCCTCTTTAGTCCCAATTCAAC 58.983 47.826 0.00 0.00 0.00 3.18
2840 6674 4.508405 CCCCTCTTTAGTCCCAATTCAACA 60.508 45.833 0.00 0.00 0.00 3.33
2841 6675 4.459337 CCCTCTTTAGTCCCAATTCAACAC 59.541 45.833 0.00 0.00 0.00 3.32
2842 6676 4.154195 CCTCTTTAGTCCCAATTCAACACG 59.846 45.833 0.00 0.00 0.00 4.49
2843 6677 4.963373 TCTTTAGTCCCAATTCAACACGA 58.037 39.130 0.00 0.00 0.00 4.35
2844 6678 5.369833 TCTTTAGTCCCAATTCAACACGAA 58.630 37.500 0.00 0.00 38.22 3.85
2845 6679 5.237779 TCTTTAGTCCCAATTCAACACGAAC 59.762 40.000 0.00 0.00 36.12 3.95
2846 6680 2.227194 AGTCCCAATTCAACACGAACC 58.773 47.619 0.00 0.00 36.12 3.62
2847 6681 1.069500 GTCCCAATTCAACACGAACCG 60.069 52.381 0.00 0.00 36.12 4.44
2848 6682 0.239879 CCCAATTCAACACGAACCGG 59.760 55.000 0.00 0.00 36.12 5.28
2849 6683 0.239879 CCAATTCAACACGAACCGGG 59.760 55.000 6.32 0.00 36.12 5.73
2850 6684 1.231221 CAATTCAACACGAACCGGGA 58.769 50.000 6.32 0.00 36.12 5.14
2851 6685 1.810151 CAATTCAACACGAACCGGGAT 59.190 47.619 6.32 0.00 36.12 3.85
2852 6686 2.194201 ATTCAACACGAACCGGGATT 57.806 45.000 6.32 0.00 36.12 3.01
2853 6687 2.835580 TTCAACACGAACCGGGATTA 57.164 45.000 6.32 0.00 32.98 1.75
2854 6688 2.835580 TCAACACGAACCGGGATTAA 57.164 45.000 6.32 0.00 32.98 1.40
2855 6689 3.123157 TCAACACGAACCGGGATTAAA 57.877 42.857 6.32 0.00 32.98 1.52
2856 6690 3.068560 TCAACACGAACCGGGATTAAAG 58.931 45.455 6.32 0.00 32.98 1.85
2857 6691 2.103537 ACACGAACCGGGATTAAAGG 57.896 50.000 6.32 0.00 32.98 3.11
2858 6692 0.730840 CACGAACCGGGATTAAAGGC 59.269 55.000 6.32 0.00 28.17 4.35
2859 6693 0.393402 ACGAACCGGGATTAAAGGCC 60.393 55.000 6.32 0.00 0.00 5.19
2860 6694 1.099295 CGAACCGGGATTAAAGGCCC 61.099 60.000 6.32 0.00 41.11 5.80
2861 6695 0.033894 GAACCGGGATTAAAGGCCCA 60.034 55.000 6.32 0.00 44.94 5.36
2862 6696 0.323999 AACCGGGATTAAAGGCCCAC 60.324 55.000 6.32 0.00 44.94 4.61
2863 6697 1.455032 CCGGGATTAAAGGCCCACC 60.455 63.158 0.00 0.00 44.94 4.61
2864 6698 1.304952 CGGGATTAAAGGCCCACCA 59.695 57.895 0.00 0.00 44.94 4.17
2865 6699 1.035385 CGGGATTAAAGGCCCACCAC 61.035 60.000 0.00 0.00 44.94 4.16
2866 6700 1.035385 GGGATTAAAGGCCCACCACG 61.035 60.000 0.00 0.00 44.07 4.94
2867 6701 0.323087 GGATTAAAGGCCCACCACGT 60.323 55.000 0.00 0.00 39.06 4.49
2868 6702 0.808755 GATTAAAGGCCCACCACGTG 59.191 55.000 9.08 9.08 39.06 4.49
2896 6730 2.593436 CGCCGTGGTCTGGGTTTT 60.593 61.111 0.00 0.00 0.00 2.43
2897 6731 2.190841 CGCCGTGGTCTGGGTTTTT 61.191 57.895 0.00 0.00 0.00 1.94
2923 6757 7.622893 TTTTGAAATAAAGCAAAAACAGCCT 57.377 28.000 0.00 0.00 40.02 4.58
2924 6758 8.723942 TTTTGAAATAAAGCAAAAACAGCCTA 57.276 26.923 0.00 0.00 40.02 3.93
2925 6759 7.707774 TTGAAATAAAGCAAAAACAGCCTAC 57.292 32.000 0.00 0.00 0.00 3.18
2926 6760 6.220201 TGAAATAAAGCAAAAACAGCCTACC 58.780 36.000 0.00 0.00 0.00 3.18
2927 6761 6.041523 TGAAATAAAGCAAAAACAGCCTACCT 59.958 34.615 0.00 0.00 0.00 3.08
2928 6762 7.231722 TGAAATAAAGCAAAAACAGCCTACCTA 59.768 33.333 0.00 0.00 0.00 3.08
2929 6763 7.718334 AATAAAGCAAAAACAGCCTACCTAT 57.282 32.000 0.00 0.00 0.00 2.57
2930 6764 7.718334 ATAAAGCAAAAACAGCCTACCTATT 57.282 32.000 0.00 0.00 0.00 1.73
2931 6765 5.391312 AAGCAAAAACAGCCTACCTATTG 57.609 39.130 0.00 0.00 0.00 1.90
2932 6766 3.763897 AGCAAAAACAGCCTACCTATTGG 59.236 43.478 0.00 0.00 39.83 3.16
2933 6767 3.119137 GCAAAAACAGCCTACCTATTGGG 60.119 47.826 0.00 0.00 41.89 4.12
2934 6768 2.437085 AAACAGCCTACCTATTGGGC 57.563 50.000 0.00 0.00 45.57 5.36
2935 6769 0.551396 AACAGCCTACCTATTGGGCC 59.449 55.000 0.00 0.00 46.31 5.80
2936 6770 1.071471 CAGCCTACCTATTGGGCCG 59.929 63.158 0.00 0.00 46.31 6.13
2937 6771 2.147387 AGCCTACCTATTGGGCCGG 61.147 63.158 0.00 0.00 46.31 6.13
2938 6772 2.430367 CCTACCTATTGGGCCGGC 59.570 66.667 21.18 21.18 39.10 6.13
2939 6773 2.448582 CCTACCTATTGGGCCGGCA 61.449 63.158 30.85 8.42 39.10 5.69
2940 6774 1.227853 CTACCTATTGGGCCGGCAC 60.228 63.158 30.85 28.40 39.10 5.01
2941 6775 2.989055 CTACCTATTGGGCCGGCACG 62.989 65.000 30.85 14.53 46.00 5.34
2954 6788 3.564027 GCACGGCCTGCATACGAC 61.564 66.667 18.68 0.82 46.29 4.34
2955 6789 2.184322 CACGGCCTGCATACGACT 59.816 61.111 0.00 0.00 0.00 4.18
2956 6790 1.435925 CACGGCCTGCATACGACTA 59.564 57.895 0.00 0.00 0.00 2.59
2957 6791 0.595053 CACGGCCTGCATACGACTAG 60.595 60.000 0.00 0.00 0.00 2.57
2958 6792 0.750546 ACGGCCTGCATACGACTAGA 60.751 55.000 0.00 0.00 0.00 2.43
2959 6793 0.384309 CGGCCTGCATACGACTAGAA 59.616 55.000 0.00 0.00 0.00 2.10
2960 6794 1.202371 CGGCCTGCATACGACTAGAAA 60.202 52.381 0.00 0.00 0.00 2.52
2961 6795 2.474816 GGCCTGCATACGACTAGAAAG 58.525 52.381 0.00 0.00 0.00 2.62
2962 6796 1.861575 GCCTGCATACGACTAGAAAGC 59.138 52.381 0.00 0.00 0.00 3.51
2963 6797 2.474816 CCTGCATACGACTAGAAAGCC 58.525 52.381 0.00 0.00 0.00 4.35
2964 6798 2.159099 CCTGCATACGACTAGAAAGCCA 60.159 50.000 0.00 0.00 0.00 4.75
2965 6799 3.521560 CTGCATACGACTAGAAAGCCAA 58.478 45.455 0.00 0.00 0.00 4.52
2966 6800 3.259064 TGCATACGACTAGAAAGCCAAC 58.741 45.455 0.00 0.00 0.00 3.77
2967 6801 2.608090 GCATACGACTAGAAAGCCAACC 59.392 50.000 0.00 0.00 0.00 3.77
2968 6802 3.679083 GCATACGACTAGAAAGCCAACCT 60.679 47.826 0.00 0.00 0.00 3.50
2969 6803 2.745515 ACGACTAGAAAGCCAACCTC 57.254 50.000 0.00 0.00 0.00 3.85
2970 6804 2.249139 ACGACTAGAAAGCCAACCTCT 58.751 47.619 0.00 0.00 0.00 3.69
2971 6805 3.428532 ACGACTAGAAAGCCAACCTCTA 58.571 45.455 0.00 0.00 0.00 2.43
2972 6806 3.444388 ACGACTAGAAAGCCAACCTCTAG 59.556 47.826 0.00 4.24 42.86 2.43
2983 6817 2.942604 AACCTCTAGTTGGGCTAGGA 57.057 50.000 8.84 0.00 45.55 2.94
2984 6818 3.423058 AACCTCTAGTTGGGCTAGGAT 57.577 47.619 8.84 0.00 45.55 3.24
2985 6819 2.683768 ACCTCTAGTTGGGCTAGGATG 58.316 52.381 8.84 0.00 45.55 3.51
2986 6820 1.346068 CCTCTAGTTGGGCTAGGATGC 59.654 57.143 0.00 0.00 45.55 3.91
2987 6821 2.042464 CTCTAGTTGGGCTAGGATGCA 58.958 52.381 0.00 0.00 45.55 3.96
2988 6822 2.036992 CTCTAGTTGGGCTAGGATGCAG 59.963 54.545 0.00 0.00 45.55 4.41
2989 6823 1.071385 CTAGTTGGGCTAGGATGCAGG 59.929 57.143 0.00 0.00 42.63 4.85
2990 6824 1.825622 GTTGGGCTAGGATGCAGGC 60.826 63.158 0.00 2.61 37.83 4.85
2993 6827 4.632974 GGCTAGGATGCAGGCCCG 62.633 72.222 0.00 0.00 38.77 6.13
2994 6828 3.866582 GCTAGGATGCAGGCCCGT 61.867 66.667 0.00 0.00 0.00 5.28
2995 6829 2.507854 GCTAGGATGCAGGCCCGTA 61.508 63.158 0.00 0.00 0.00 4.02
2996 6830 1.367840 CTAGGATGCAGGCCCGTAC 59.632 63.158 0.00 0.00 0.00 3.67
2997 6831 2.421877 CTAGGATGCAGGCCCGTACG 62.422 65.000 8.69 8.69 0.00 3.67
2998 6832 4.910585 GGATGCAGGCCCGTACGG 62.911 72.222 27.68 27.68 0.00 4.02
3010 6844 4.519437 GTACGGCCCAGTACGCCC 62.519 72.222 0.00 0.00 43.98 6.13
3015 6849 4.338710 GCCCAGTACGCCCCACAA 62.339 66.667 0.00 0.00 0.00 3.33
3016 6850 2.046314 CCCAGTACGCCCCACAAG 60.046 66.667 0.00 0.00 0.00 3.16
3017 6851 2.046314 CCAGTACGCCCCACAAGG 60.046 66.667 0.00 0.00 0.00 3.61
3026 6860 3.677963 CCCCACAAGGCAGAAGAAT 57.322 52.632 0.00 0.00 0.00 2.40
3027 6861 1.928868 CCCCACAAGGCAGAAGAATT 58.071 50.000 0.00 0.00 0.00 2.17
3028 6862 1.547372 CCCCACAAGGCAGAAGAATTG 59.453 52.381 0.00 0.00 0.00 2.32
3029 6863 1.067354 CCCACAAGGCAGAAGAATTGC 60.067 52.381 0.00 0.00 40.80 3.56
3030 6864 1.614903 CCACAAGGCAGAAGAATTGCA 59.385 47.619 0.00 0.00 43.28 4.08
3031 6865 2.036217 CCACAAGGCAGAAGAATTGCAA 59.964 45.455 0.00 0.00 43.28 4.08
3032 6866 3.306502 CCACAAGGCAGAAGAATTGCAAT 60.307 43.478 5.99 5.99 43.28 3.56
3033 6867 4.082081 CCACAAGGCAGAAGAATTGCAATA 60.082 41.667 13.39 0.00 43.28 1.90
3034 6868 5.100259 CACAAGGCAGAAGAATTGCAATAG 58.900 41.667 13.39 0.38 43.28 1.73
3035 6869 4.159135 ACAAGGCAGAAGAATTGCAATAGG 59.841 41.667 13.39 0.35 43.28 2.57
3036 6870 2.692041 AGGCAGAAGAATTGCAATAGGC 59.308 45.455 13.39 10.61 43.28 3.93
3037 6871 2.223900 GGCAGAAGAATTGCAATAGGCC 60.224 50.000 13.39 14.68 43.28 5.19
3038 6872 2.223900 GCAGAAGAATTGCAATAGGCCC 60.224 50.000 13.39 1.76 43.89 5.80
3039 6873 3.025978 CAGAAGAATTGCAATAGGCCCA 58.974 45.455 13.39 0.00 43.89 5.36
3040 6874 3.026694 AGAAGAATTGCAATAGGCCCAC 58.973 45.455 13.39 1.56 43.89 4.61
3041 6875 2.530460 AGAATTGCAATAGGCCCACA 57.470 45.000 13.39 0.00 43.89 4.17
3042 6876 2.818921 AGAATTGCAATAGGCCCACAA 58.181 42.857 13.39 0.00 43.89 3.33
3043 6877 3.172339 AGAATTGCAATAGGCCCACAAA 58.828 40.909 13.39 0.00 43.89 2.83
3044 6878 3.196254 AGAATTGCAATAGGCCCACAAAG 59.804 43.478 13.39 0.00 43.89 2.77
3045 6879 1.265236 TTGCAATAGGCCCACAAAGG 58.735 50.000 0.00 0.00 43.89 3.11
3053 6887 4.841441 CCCACAAAGGCCTGCTTA 57.159 55.556 5.69 0.00 35.39 3.09
3054 6888 2.571548 CCCACAAAGGCCTGCTTAG 58.428 57.895 5.69 0.00 35.39 2.18
3055 6889 0.038166 CCCACAAAGGCCTGCTTAGA 59.962 55.000 5.69 0.00 35.39 2.10
3056 6890 1.457346 CCACAAAGGCCTGCTTAGAG 58.543 55.000 5.69 0.00 0.00 2.43
3057 6891 1.003580 CCACAAAGGCCTGCTTAGAGA 59.996 52.381 5.69 0.00 0.00 3.10
3058 6892 2.354259 CACAAAGGCCTGCTTAGAGAG 58.646 52.381 5.69 0.00 0.00 3.20
3059 6893 1.280421 ACAAAGGCCTGCTTAGAGAGG 59.720 52.381 5.69 0.00 0.00 3.69
3060 6894 1.556911 CAAAGGCCTGCTTAGAGAGGA 59.443 52.381 5.69 0.00 0.00 3.71
3061 6895 1.494960 AAGGCCTGCTTAGAGAGGAG 58.505 55.000 5.69 0.00 42.98 3.69
3062 6896 1.048160 AGGCCTGCTTAGAGAGGAGC 61.048 60.000 3.11 0.00 42.08 4.70
3063 6897 1.048160 GGCCTGCTTAGAGAGGAGCT 61.048 60.000 0.00 0.00 42.08 4.09
3064 6898 0.389025 GCCTGCTTAGAGAGGAGCTC 59.611 60.000 4.71 4.71 42.08 4.09
3071 6905 2.795297 GAGAGGAGCTCGACACGG 59.205 66.667 7.83 0.00 35.36 4.94
3072 6906 2.034376 AGAGGAGCTCGACACGGT 59.966 61.111 7.83 0.00 35.36 4.83
3073 6907 0.743701 GAGAGGAGCTCGACACGGTA 60.744 60.000 7.83 0.00 35.36 4.02
3074 6908 0.745128 AGAGGAGCTCGACACGGTAG 60.745 60.000 7.83 0.00 35.36 3.18
3075 6909 2.102553 GGAGCTCGACACGGTAGC 59.897 66.667 7.83 0.00 36.48 3.58
3076 6910 2.102553 GAGCTCGACACGGTAGCC 59.897 66.667 0.00 0.00 36.92 3.93
3092 6926 4.612412 CCGCGGCGGGGCTTATAA 62.612 66.667 32.80 0.00 44.15 0.98
3093 6927 2.589442 CGCGGCGGGGCTTATAAA 60.589 61.111 15.84 0.00 0.00 1.40
3094 6928 2.888998 CGCGGCGGGGCTTATAAAC 61.889 63.158 15.84 0.00 0.00 2.01
3095 6929 2.549198 GCGGCGGGGCTTATAAACC 61.549 63.158 9.78 0.00 0.00 3.27
3097 6931 1.895231 GGCGGGGCTTATAAACCGG 60.895 63.158 18.73 0.00 46.04 5.28
3098 6932 1.153107 GCGGGGCTTATAAACCGGT 60.153 57.895 18.73 0.00 46.04 5.28
3099 6933 1.441732 GCGGGGCTTATAAACCGGTG 61.442 60.000 8.52 0.00 46.04 4.94
3100 6934 0.107557 CGGGGCTTATAAACCGGTGT 60.108 55.000 8.52 4.57 42.48 4.16
3101 6935 1.385528 GGGGCTTATAAACCGGTGTG 58.614 55.000 8.52 0.00 0.00 3.82
3102 6936 1.065272 GGGGCTTATAAACCGGTGTGA 60.065 52.381 8.52 0.00 0.00 3.58
3103 6937 2.285977 GGGCTTATAAACCGGTGTGAG 58.714 52.381 8.52 5.04 0.00 3.51
3104 6938 1.669265 GGCTTATAAACCGGTGTGAGC 59.331 52.381 8.52 14.97 0.00 4.26
3105 6939 2.629051 GCTTATAAACCGGTGTGAGCT 58.371 47.619 8.52 0.00 0.00 4.09
3106 6940 2.608090 GCTTATAAACCGGTGTGAGCTC 59.392 50.000 8.52 6.82 0.00 4.09
3107 6941 2.973694 TATAAACCGGTGTGAGCTCC 57.026 50.000 8.52 3.09 0.00 4.70
3108 6942 0.981183 ATAAACCGGTGTGAGCTCCA 59.019 50.000 8.52 6.01 0.00 3.86
3109 6943 0.034337 TAAACCGGTGTGAGCTCCAC 59.966 55.000 20.72 20.72 45.88 4.02
3110 6944 1.696097 AAACCGGTGTGAGCTCCACT 61.696 55.000 25.03 10.73 45.86 4.00
3111 6945 2.100879 AACCGGTGTGAGCTCCACTC 62.101 60.000 25.03 17.16 45.86 3.51
3120 6954 2.751166 GAGCTCCACTCAACTAGCAA 57.249 50.000 0.87 0.00 45.49 3.91
3121 6955 2.615869 GAGCTCCACTCAACTAGCAAG 58.384 52.381 0.87 0.00 45.49 4.01
3122 6956 1.277557 AGCTCCACTCAACTAGCAAGG 59.722 52.381 0.00 0.00 37.44 3.61
3123 6957 1.002544 GCTCCACTCAACTAGCAAGGT 59.997 52.381 0.00 0.00 35.05 3.50
3124 6958 2.693069 CTCCACTCAACTAGCAAGGTG 58.307 52.381 0.00 0.00 42.23 4.00
3125 6959 1.347707 TCCACTCAACTAGCAAGGTGG 59.652 52.381 15.18 15.18 41.12 4.61
3127 6961 1.347707 CACTCAACTAGCAAGGTGGGA 59.652 52.381 0.00 0.00 44.47 4.37
3128 6962 1.348036 ACTCAACTAGCAAGGTGGGAC 59.652 52.381 0.00 0.00 44.47 4.46
3129 6963 1.625818 CTCAACTAGCAAGGTGGGACT 59.374 52.381 0.00 0.00 44.47 3.85
3130 6964 2.832129 CTCAACTAGCAAGGTGGGACTA 59.168 50.000 0.00 0.00 44.47 2.59
3131 6965 3.244582 TCAACTAGCAAGGTGGGACTAA 58.755 45.455 0.00 0.00 41.12 2.24
3132 6966 3.649023 TCAACTAGCAAGGTGGGACTAAA 59.351 43.478 0.00 0.00 41.12 1.85
3133 6967 3.697619 ACTAGCAAGGTGGGACTAAAC 57.302 47.619 0.00 0.00 0.00 2.01
3134 6968 2.976882 ACTAGCAAGGTGGGACTAAACA 59.023 45.455 0.00 0.00 0.00 2.83
3135 6969 3.587506 ACTAGCAAGGTGGGACTAAACAT 59.412 43.478 0.00 0.00 0.00 2.71
3136 6970 3.525800 AGCAAGGTGGGACTAAACATT 57.474 42.857 0.00 0.00 0.00 2.71
3137 6971 3.157087 AGCAAGGTGGGACTAAACATTG 58.843 45.455 0.00 0.00 40.17 2.82
3138 6972 2.890945 GCAAGGTGGGACTAAACATTGT 59.109 45.455 2.71 0.00 39.57 2.71
3139 6973 3.305335 GCAAGGTGGGACTAAACATTGTG 60.305 47.826 0.00 0.00 39.57 3.33
3140 6974 3.876309 AGGTGGGACTAAACATTGTGT 57.124 42.857 0.00 0.00 0.00 3.72
3141 6975 4.986054 AGGTGGGACTAAACATTGTGTA 57.014 40.909 0.00 0.00 0.00 2.90
3142 6976 4.648651 AGGTGGGACTAAACATTGTGTAC 58.351 43.478 0.00 0.00 0.00 2.90
3143 6977 4.349930 AGGTGGGACTAAACATTGTGTACT 59.650 41.667 0.00 0.00 0.00 2.73
3144 6978 4.454504 GGTGGGACTAAACATTGTGTACTG 59.545 45.833 0.00 0.00 0.00 2.74
3145 6979 4.069304 TGGGACTAAACATTGTGTACTGC 58.931 43.478 0.00 0.00 0.00 4.40
3146 6980 3.124636 GGGACTAAACATTGTGTACTGCG 59.875 47.826 0.00 0.00 0.00 5.18
3147 6981 3.124636 GGACTAAACATTGTGTACTGCGG 59.875 47.826 0.00 0.00 0.00 5.69
3148 6982 3.071479 ACTAAACATTGTGTACTGCGGG 58.929 45.455 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 129 6.258947 GCATGTCTAGAAGGGAATGAAAGTAC 59.741 42.308 0.00 0.00 0.00 2.73
131 132 4.578105 GGCATGTCTAGAAGGGAATGAAAG 59.422 45.833 0.00 0.00 0.00 2.62
282 283 2.743928 CTGGTTCGAGGCCACAGC 60.744 66.667 5.01 0.00 38.76 4.40
286 287 1.122632 TAACCACTGGTTCGAGGCCA 61.123 55.000 17.11 9.89 43.05 5.36
298 299 3.771160 CGGCCGCTCCTAACCACT 61.771 66.667 14.67 0.00 0.00 4.00
414 415 3.487202 CACATCCGCAACCCGTCG 61.487 66.667 0.00 0.00 34.38 5.12
448 449 2.124983 GCTCAATCCTCTGCCGCA 60.125 61.111 0.00 0.00 0.00 5.69
606 607 9.114952 GAGTAAAAGTTCCGGTATACTAGTACT 57.885 37.037 4.31 18.34 31.77 2.73
607 608 8.346300 GGAGTAAAAGTTCCGGTATACTAGTAC 58.654 40.741 4.31 9.41 0.00 2.73
634 635 3.901844 CCGATCCCCTAAATCTGGTTAGA 59.098 47.826 0.00 0.00 33.62 2.10
636 637 2.370849 GCCGATCCCCTAAATCTGGTTA 59.629 50.000 0.00 0.00 0.00 2.85
637 638 1.143073 GCCGATCCCCTAAATCTGGTT 59.857 52.381 0.00 0.00 0.00 3.67
638 639 0.765510 GCCGATCCCCTAAATCTGGT 59.234 55.000 0.00 0.00 0.00 4.00
639 640 1.059913 AGCCGATCCCCTAAATCTGG 58.940 55.000 0.00 0.00 0.00 3.86
640 641 3.165875 TCTAGCCGATCCCCTAAATCTG 58.834 50.000 0.00 0.00 0.00 2.90
641 642 3.076182 TCTCTAGCCGATCCCCTAAATCT 59.924 47.826 0.00 0.00 0.00 2.40
850 853 4.343814 TGGATACTGCTAAATGGATCGTCA 59.656 41.667 0.00 0.00 37.61 4.35
862 865 3.834813 GGTCTCATGGATGGATACTGCTA 59.165 47.826 0.00 0.00 37.61 3.49
1027 3758 3.862991 GGCGGAGGGAGTAAGGGC 61.863 72.222 0.00 0.00 0.00 5.19
1066 3800 1.596895 GACCTGGGTGAGACGGTCTC 61.597 65.000 27.22 27.22 43.65 3.36
1200 3935 2.345760 GCCGTCGGGGTAGAACTCA 61.346 63.158 14.38 0.00 38.44 3.41
1599 4334 4.698625 ACGTCCGCCCCTTCTCCT 62.699 66.667 0.00 0.00 0.00 3.69
2121 4856 7.581476 ACATGTTGCTATAGTTTGTTACACAC 58.419 34.615 0.84 0.00 0.00 3.82
2170 4919 0.802494 ACTAAATGCGGACTTTGGCG 59.198 50.000 0.00 0.00 0.00 5.69
2210 4959 1.478916 TCTTTGGCCATCATGTGCATG 59.521 47.619 6.09 5.86 40.09 4.06
2236 4987 4.022068 CCAAGCAAAAAGATAGCAGTCCAA 60.022 41.667 0.00 0.00 0.00 3.53
2307 5067 7.743400 CGATGATTCAAATAATCAATGACTCCG 59.257 37.037 4.67 0.00 39.75 4.63
2396 5156 5.163854 GGATCCAACTGAGTCGTGTAATTTG 60.164 44.000 6.95 0.00 0.00 2.32
2405 5165 1.406069 CCTTGGGATCCAACTGAGTCG 60.406 57.143 15.23 0.00 38.75 4.18
2477 6311 4.885907 CCAGCTGAAAGGATGACACATAAT 59.114 41.667 17.39 0.00 0.00 1.28
2478 6312 4.263462 ACCAGCTGAAAGGATGACACATAA 60.263 41.667 17.39 0.00 0.00 1.90
2499 6333 7.956420 TCATTACGGATGAACAATGTATACC 57.044 36.000 0.00 0.00 41.73 2.73
2621 6455 6.459923 ACATATCTTTAGGCGAAGAGGAATC 58.540 40.000 11.09 0.00 38.90 2.52
2715 6549 6.420913 TTTCTACTAGTGCAAAGACCTTCT 57.579 37.500 5.39 0.00 0.00 2.85
2730 6564 9.643693 CCGGTACTAAAAGTCATTTTTCTACTA 57.356 33.333 0.00 0.00 39.61 1.82
2731 6565 8.152898 ACCGGTACTAAAAGTCATTTTTCTACT 58.847 33.333 4.49 0.00 39.61 2.57
2732 6566 8.315391 ACCGGTACTAAAAGTCATTTTTCTAC 57.685 34.615 4.49 0.00 39.61 2.59
2733 6567 8.907222 AACCGGTACTAAAAGTCATTTTTCTA 57.093 30.769 8.00 0.00 39.61 2.10
2734 6568 7.307573 CGAACCGGTACTAAAAGTCATTTTTCT 60.308 37.037 8.00 0.00 39.61 2.52
2735 6569 6.793680 CGAACCGGTACTAAAAGTCATTTTTC 59.206 38.462 8.00 0.00 39.61 2.29
2736 6570 6.260714 ACGAACCGGTACTAAAAGTCATTTTT 59.739 34.615 8.00 0.00 41.68 1.94
2737 6571 5.759763 ACGAACCGGTACTAAAAGTCATTTT 59.240 36.000 8.00 0.00 41.48 1.82
2738 6572 5.299949 ACGAACCGGTACTAAAAGTCATTT 58.700 37.500 8.00 0.00 34.92 2.32
2739 6573 4.886579 ACGAACCGGTACTAAAAGTCATT 58.113 39.130 8.00 0.00 0.00 2.57
2740 6574 4.525912 ACGAACCGGTACTAAAAGTCAT 57.474 40.909 8.00 0.00 0.00 3.06
2741 6575 5.446143 TTACGAACCGGTACTAAAAGTCA 57.554 39.130 8.00 0.00 0.00 3.41
2742 6576 4.859245 CCTTACGAACCGGTACTAAAAGTC 59.141 45.833 8.00 0.00 0.00 3.01
2743 6577 4.522789 TCCTTACGAACCGGTACTAAAAGT 59.477 41.667 8.00 3.11 0.00 2.66
2744 6578 4.859245 GTCCTTACGAACCGGTACTAAAAG 59.141 45.833 8.00 8.52 0.00 2.27
2745 6579 4.321675 GGTCCTTACGAACCGGTACTAAAA 60.322 45.833 8.00 0.00 0.00 1.52
2746 6580 3.192633 GGTCCTTACGAACCGGTACTAAA 59.807 47.826 8.00 0.00 0.00 1.85
2747 6581 2.752903 GGTCCTTACGAACCGGTACTAA 59.247 50.000 8.00 2.82 0.00 2.24
2748 6582 2.026262 AGGTCCTTACGAACCGGTACTA 60.026 50.000 8.00 0.00 40.63 1.82
2749 6583 1.177401 GGTCCTTACGAACCGGTACT 58.823 55.000 8.00 0.00 0.00 2.73
2750 6584 1.177401 AGGTCCTTACGAACCGGTAC 58.823 55.000 8.00 0.00 40.63 3.34
2751 6585 1.923356 AAGGTCCTTACGAACCGGTA 58.077 50.000 8.00 0.00 40.63 4.02
2752 6586 1.051008 AAAGGTCCTTACGAACCGGT 58.949 50.000 0.00 0.00 40.63 5.28
2753 6587 2.232208 ACTAAAGGTCCTTACGAACCGG 59.768 50.000 4.04 0.00 40.63 5.28
2754 6588 3.582714 ACTAAAGGTCCTTACGAACCG 57.417 47.619 4.04 0.00 40.63 4.44
2755 6589 4.675408 CGGTACTAAAGGTCCTTACGAACC 60.675 50.000 4.04 9.80 35.69 3.62
2756 6590 4.415735 CGGTACTAAAGGTCCTTACGAAC 58.584 47.826 4.04 1.86 0.00 3.95
2757 6591 3.443681 CCGGTACTAAAGGTCCTTACGAA 59.556 47.826 4.04 0.00 0.00 3.85
2758 6592 3.016736 CCGGTACTAAAGGTCCTTACGA 58.983 50.000 4.04 0.00 0.00 3.43
2759 6593 2.755103 ACCGGTACTAAAGGTCCTTACG 59.245 50.000 4.49 1.52 31.69 3.18
2760 6594 4.808414 AACCGGTACTAAAGGTCCTTAC 57.192 45.455 8.00 0.00 37.26 2.34
2761 6595 5.512921 CCAAAACCGGTACTAAAGGTCCTTA 60.513 44.000 8.00 0.00 37.26 2.69
2762 6596 4.392047 CAAAACCGGTACTAAAGGTCCTT 58.608 43.478 8.00 0.00 37.26 3.36
2763 6597 3.244665 CCAAAACCGGTACTAAAGGTCCT 60.245 47.826 8.00 0.00 37.26 3.85
2764 6598 3.076621 CCAAAACCGGTACTAAAGGTCC 58.923 50.000 8.00 0.00 37.26 4.46
2765 6599 4.006780 TCCAAAACCGGTACTAAAGGTC 57.993 45.455 8.00 0.00 37.26 3.85
2766 6600 4.436113 TTCCAAAACCGGTACTAAAGGT 57.564 40.909 8.00 0.00 40.50 3.50
2767 6601 4.022935 GGTTTCCAAAACCGGTACTAAAGG 60.023 45.833 8.00 4.71 0.00 3.11
2768 6602 5.112220 GGTTTCCAAAACCGGTACTAAAG 57.888 43.478 8.00 0.00 0.00 1.85
2778 6612 1.268625 CTAGTGCCGGTTTCCAAAACC 59.731 52.381 1.90 10.86 36.96 3.27
2779 6613 2.223745 TCTAGTGCCGGTTTCCAAAAC 58.776 47.619 1.90 0.00 0.00 2.43
2780 6614 2.500229 CTCTAGTGCCGGTTTCCAAAA 58.500 47.619 1.90 0.00 0.00 2.44
2781 6615 1.271163 CCTCTAGTGCCGGTTTCCAAA 60.271 52.381 1.90 0.00 0.00 3.28
2782 6616 0.323629 CCTCTAGTGCCGGTTTCCAA 59.676 55.000 1.90 0.00 0.00 3.53
2783 6617 1.550130 CCCTCTAGTGCCGGTTTCCA 61.550 60.000 1.90 0.00 0.00 3.53
2784 6618 1.221021 CCCTCTAGTGCCGGTTTCC 59.779 63.158 1.90 0.00 0.00 3.13
2785 6619 0.391263 CACCCTCTAGTGCCGGTTTC 60.391 60.000 1.90 0.00 0.00 2.78
2786 6620 1.677552 CACCCTCTAGTGCCGGTTT 59.322 57.895 1.90 0.00 0.00 3.27
2787 6621 2.291043 CCACCCTCTAGTGCCGGTT 61.291 63.158 1.90 0.00 36.38 4.44
2788 6622 2.683933 CCACCCTCTAGTGCCGGT 60.684 66.667 1.90 0.00 36.38 5.28
2789 6623 3.470888 CCCACCCTCTAGTGCCGG 61.471 72.222 0.00 0.00 36.38 6.13
2790 6624 3.470888 CCCCACCCTCTAGTGCCG 61.471 72.222 0.00 0.00 36.38 5.69
2791 6625 2.040606 TCCCCACCCTCTAGTGCC 59.959 66.667 0.00 0.00 36.38 5.01
2792 6626 0.032416 TAGTCCCCACCCTCTAGTGC 60.032 60.000 0.00 0.00 36.38 4.40
2793 6627 2.544844 TTAGTCCCCACCCTCTAGTG 57.455 55.000 0.00 0.00 37.51 2.74
2794 6628 2.292984 CCTTTAGTCCCCACCCTCTAGT 60.293 54.545 0.00 0.00 0.00 2.57
2795 6629 2.292984 ACCTTTAGTCCCCACCCTCTAG 60.293 54.545 0.00 0.00 0.00 2.43
2796 6630 1.726352 ACCTTTAGTCCCCACCCTCTA 59.274 52.381 0.00 0.00 0.00 2.43
2797 6631 0.496841 ACCTTTAGTCCCCACCCTCT 59.503 55.000 0.00 0.00 0.00 3.69
2798 6632 0.910338 GACCTTTAGTCCCCACCCTC 59.090 60.000 0.00 0.00 39.84 4.30
2799 6633 3.100039 GACCTTTAGTCCCCACCCT 57.900 57.895 0.00 0.00 39.84 4.34
2815 6649 3.265995 TGAATTGGGACTAAAGAGGGGAC 59.734 47.826 0.00 0.00 0.00 4.46
2816 6650 3.537337 TGAATTGGGACTAAAGAGGGGA 58.463 45.455 0.00 0.00 0.00 4.81
2817 6651 4.017126 GTTGAATTGGGACTAAAGAGGGG 58.983 47.826 0.00 0.00 0.00 4.79
2818 6652 4.459337 GTGTTGAATTGGGACTAAAGAGGG 59.541 45.833 0.00 0.00 0.00 4.30
2819 6653 4.154195 CGTGTTGAATTGGGACTAAAGAGG 59.846 45.833 0.00 0.00 0.00 3.69
2820 6654 4.994852 TCGTGTTGAATTGGGACTAAAGAG 59.005 41.667 0.00 0.00 0.00 2.85
2821 6655 4.963373 TCGTGTTGAATTGGGACTAAAGA 58.037 39.130 0.00 0.00 0.00 2.52
2822 6656 5.449304 GTTCGTGTTGAATTGGGACTAAAG 58.551 41.667 0.00 0.00 39.21 1.85
2823 6657 4.276431 GGTTCGTGTTGAATTGGGACTAAA 59.724 41.667 0.00 0.00 39.21 1.85
2824 6658 3.816523 GGTTCGTGTTGAATTGGGACTAA 59.183 43.478 0.00 0.00 39.21 2.24
2825 6659 3.404899 GGTTCGTGTTGAATTGGGACTA 58.595 45.455 0.00 0.00 39.21 2.59
2826 6660 2.227194 GGTTCGTGTTGAATTGGGACT 58.773 47.619 0.00 0.00 39.21 3.85
2827 6661 1.069500 CGGTTCGTGTTGAATTGGGAC 60.069 52.381 0.00 0.00 39.21 4.46
2828 6662 1.231221 CGGTTCGTGTTGAATTGGGA 58.769 50.000 0.00 0.00 39.21 4.37
2829 6663 0.239879 CCGGTTCGTGTTGAATTGGG 59.760 55.000 0.00 0.00 39.21 4.12
2830 6664 0.239879 CCCGGTTCGTGTTGAATTGG 59.760 55.000 0.00 0.00 39.21 3.16
2831 6665 1.231221 TCCCGGTTCGTGTTGAATTG 58.769 50.000 0.00 0.00 39.21 2.32
2832 6666 2.194201 ATCCCGGTTCGTGTTGAATT 57.806 45.000 0.00 0.00 39.21 2.17
2833 6667 2.194201 AATCCCGGTTCGTGTTGAAT 57.806 45.000 0.00 0.00 39.21 2.57
2834 6668 2.835580 TAATCCCGGTTCGTGTTGAA 57.164 45.000 0.00 0.00 0.00 2.69
2835 6669 2.835580 TTAATCCCGGTTCGTGTTGA 57.164 45.000 0.00 0.00 0.00 3.18
2836 6670 2.160813 CCTTTAATCCCGGTTCGTGTTG 59.839 50.000 0.00 0.00 0.00 3.33
2837 6671 2.429478 CCTTTAATCCCGGTTCGTGTT 58.571 47.619 0.00 0.00 0.00 3.32
2838 6672 1.947212 GCCTTTAATCCCGGTTCGTGT 60.947 52.381 0.00 0.00 0.00 4.49
2839 6673 0.730840 GCCTTTAATCCCGGTTCGTG 59.269 55.000 0.00 0.00 0.00 4.35
2840 6674 0.393402 GGCCTTTAATCCCGGTTCGT 60.393 55.000 0.00 0.00 0.00 3.85
2841 6675 1.099295 GGGCCTTTAATCCCGGTTCG 61.099 60.000 0.84 0.00 32.00 3.95
2842 6676 0.033894 TGGGCCTTTAATCCCGGTTC 60.034 55.000 4.53 0.00 45.60 3.62
2843 6677 0.323999 GTGGGCCTTTAATCCCGGTT 60.324 55.000 4.53 0.00 45.60 4.44
2844 6678 1.305287 GTGGGCCTTTAATCCCGGT 59.695 57.895 4.53 0.00 45.60 5.28
2845 6679 1.455032 GGTGGGCCTTTAATCCCGG 60.455 63.158 4.53 0.00 45.60 5.73
2846 6680 1.035385 GTGGTGGGCCTTTAATCCCG 61.035 60.000 4.53 0.00 45.60 5.14
2847 6681 1.035385 CGTGGTGGGCCTTTAATCCC 61.035 60.000 4.53 0.00 42.93 3.85
2848 6682 0.323087 ACGTGGTGGGCCTTTAATCC 60.323 55.000 4.53 0.00 35.27 3.01
2849 6683 0.808755 CACGTGGTGGGCCTTTAATC 59.191 55.000 7.95 0.00 35.27 1.75
2850 6684 2.955609 CACGTGGTGGGCCTTTAAT 58.044 52.632 7.95 0.00 35.27 1.40
2851 6685 4.484987 CACGTGGTGGGCCTTTAA 57.515 55.556 7.95 0.00 35.27 1.52
2879 6713 2.190841 AAAAACCCAGACCACGGCG 61.191 57.895 4.80 4.80 0.00 6.46
2880 6714 3.850508 AAAAACCCAGACCACGGC 58.149 55.556 0.00 0.00 0.00 5.68
2898 6732 8.049655 AGGCTGTTTTTGCTTTATTTCAAAAA 57.950 26.923 8.29 8.29 44.78 1.94
2899 6733 7.622893 AGGCTGTTTTTGCTTTATTTCAAAA 57.377 28.000 0.00 0.00 39.53 2.44
2900 6734 7.225734 GGTAGGCTGTTTTTGCTTTATTTCAAA 59.774 33.333 0.00 0.00 0.00 2.69
2901 6735 6.704050 GGTAGGCTGTTTTTGCTTTATTTCAA 59.296 34.615 0.00 0.00 0.00 2.69
2902 6736 6.041523 AGGTAGGCTGTTTTTGCTTTATTTCA 59.958 34.615 0.00 0.00 0.00 2.69
2903 6737 6.455647 AGGTAGGCTGTTTTTGCTTTATTTC 58.544 36.000 0.00 0.00 0.00 2.17
2904 6738 6.419484 AGGTAGGCTGTTTTTGCTTTATTT 57.581 33.333 0.00 0.00 0.00 1.40
2905 6739 7.718334 ATAGGTAGGCTGTTTTTGCTTTATT 57.282 32.000 0.00 0.00 0.00 1.40
2906 6740 7.363793 CCAATAGGTAGGCTGTTTTTGCTTTAT 60.364 37.037 0.00 0.00 0.00 1.40
2907 6741 6.071616 CCAATAGGTAGGCTGTTTTTGCTTTA 60.072 38.462 0.00 0.00 0.00 1.85
2908 6742 5.279456 CCAATAGGTAGGCTGTTTTTGCTTT 60.279 40.000 0.00 0.00 0.00 3.51
2909 6743 4.220602 CCAATAGGTAGGCTGTTTTTGCTT 59.779 41.667 0.00 0.00 0.00 3.91
2910 6744 3.763897 CCAATAGGTAGGCTGTTTTTGCT 59.236 43.478 0.00 0.00 0.00 3.91
2911 6745 3.119137 CCCAATAGGTAGGCTGTTTTTGC 60.119 47.826 0.00 0.00 0.00 3.68
2912 6746 3.119137 GCCCAATAGGTAGGCTGTTTTTG 60.119 47.826 0.00 0.00 43.62 2.44
2913 6747 3.096852 GCCCAATAGGTAGGCTGTTTTT 58.903 45.455 0.00 0.00 43.62 1.94
2914 6748 2.623239 GGCCCAATAGGTAGGCTGTTTT 60.623 50.000 0.00 0.00 46.31 2.43
2915 6749 1.063942 GGCCCAATAGGTAGGCTGTTT 60.064 52.381 0.00 0.00 46.31 2.83
2916 6750 0.551396 GGCCCAATAGGTAGGCTGTT 59.449 55.000 0.00 0.00 46.31 3.16
2917 6751 1.696097 CGGCCCAATAGGTAGGCTGT 61.696 60.000 0.00 0.00 46.14 4.40
2918 6752 1.071471 CGGCCCAATAGGTAGGCTG 59.929 63.158 0.00 0.00 46.31 4.85
2919 6753 2.147387 CCGGCCCAATAGGTAGGCT 61.147 63.158 0.00 0.00 46.31 4.58
2920 6754 2.430367 CCGGCCCAATAGGTAGGC 59.570 66.667 0.00 0.00 46.37 3.93
2921 6755 2.430367 GCCGGCCCAATAGGTAGG 59.570 66.667 18.11 0.00 38.26 3.18
2922 6756 1.227853 GTGCCGGCCCAATAGGTAG 60.228 63.158 26.77 0.00 38.26 3.18
2923 6757 2.912714 GTGCCGGCCCAATAGGTA 59.087 61.111 26.77 0.00 38.26 3.08
2924 6758 4.483243 CGTGCCGGCCCAATAGGT 62.483 66.667 26.77 0.00 38.26 3.08
2938 6772 0.595053 CTAGTCGTATGCAGGCCGTG 60.595 60.000 0.00 0.00 0.00 4.94
2939 6773 0.750546 TCTAGTCGTATGCAGGCCGT 60.751 55.000 0.00 0.00 0.00 5.68
2940 6774 0.384309 TTCTAGTCGTATGCAGGCCG 59.616 55.000 0.00 0.00 0.00 6.13
2941 6775 2.474816 CTTTCTAGTCGTATGCAGGCC 58.525 52.381 0.00 0.00 0.00 5.19
2942 6776 1.861575 GCTTTCTAGTCGTATGCAGGC 59.138 52.381 0.00 0.00 0.00 4.85
2943 6777 2.159099 TGGCTTTCTAGTCGTATGCAGG 60.159 50.000 0.00 0.00 0.00 4.85
2944 6778 3.165058 TGGCTTTCTAGTCGTATGCAG 57.835 47.619 0.00 0.00 0.00 4.41
2945 6779 3.259064 GTTGGCTTTCTAGTCGTATGCA 58.741 45.455 0.00 0.00 0.00 3.96
2946 6780 2.608090 GGTTGGCTTTCTAGTCGTATGC 59.392 50.000 0.00 0.00 0.00 3.14
2947 6781 4.113354 GAGGTTGGCTTTCTAGTCGTATG 58.887 47.826 0.00 0.00 0.00 2.39
2948 6782 4.024670 AGAGGTTGGCTTTCTAGTCGTAT 58.975 43.478 0.00 0.00 0.00 3.06
2949 6783 3.428532 AGAGGTTGGCTTTCTAGTCGTA 58.571 45.455 0.00 0.00 0.00 3.43
2950 6784 2.249139 AGAGGTTGGCTTTCTAGTCGT 58.751 47.619 0.00 0.00 0.00 4.34
2951 6785 3.444388 ACTAGAGGTTGGCTTTCTAGTCG 59.556 47.826 7.41 0.00 46.49 4.18
2969 6803 1.071385 CCTGCATCCTAGCCCAACTAG 59.929 57.143 0.00 0.00 46.95 2.57
2970 6804 1.131638 CCTGCATCCTAGCCCAACTA 58.868 55.000 0.00 0.00 0.00 2.24
2971 6805 1.918253 CCTGCATCCTAGCCCAACT 59.082 57.895 0.00 0.00 0.00 3.16
2972 6806 1.825622 GCCTGCATCCTAGCCCAAC 60.826 63.158 0.00 0.00 0.00 3.77
2973 6807 2.597340 GCCTGCATCCTAGCCCAA 59.403 61.111 0.00 0.00 0.00 4.12
2974 6808 3.492353 GGCCTGCATCCTAGCCCA 61.492 66.667 0.00 0.00 39.60 5.36
2976 6810 4.632974 CGGGCCTGCATCCTAGCC 62.633 72.222 0.84 4.57 44.99 3.93
2977 6811 2.507854 TACGGGCCTGCATCCTAGC 61.508 63.158 12.89 0.00 0.00 3.42
2978 6812 1.367840 GTACGGGCCTGCATCCTAG 59.632 63.158 12.89 3.35 0.00 3.02
2979 6813 2.495409 CGTACGGGCCTGCATCCTA 61.495 63.158 12.89 0.00 0.00 2.94
2980 6814 3.849951 CGTACGGGCCTGCATCCT 61.850 66.667 12.89 0.00 0.00 3.24
2981 6815 4.910585 CCGTACGGGCCTGCATCC 62.911 72.222 27.00 0.00 0.00 3.51
2998 6832 4.338710 TTGTGGGGCGTACTGGGC 62.339 66.667 0.00 0.00 0.00 5.36
2999 6833 2.046314 CTTGTGGGGCGTACTGGG 60.046 66.667 0.00 0.00 0.00 4.45
3000 6834 2.046314 CCTTGTGGGGCGTACTGG 60.046 66.667 0.00 0.00 0.00 4.00
3001 6835 2.746277 GCCTTGTGGGGCGTACTG 60.746 66.667 0.00 0.00 42.82 2.74
3008 6842 1.547372 CAATTCTTCTGCCTTGTGGGG 59.453 52.381 0.00 0.00 35.12 4.96
3009 6843 1.067354 GCAATTCTTCTGCCTTGTGGG 60.067 52.381 0.00 0.00 33.51 4.61
3010 6844 1.614903 TGCAATTCTTCTGCCTTGTGG 59.385 47.619 0.00 0.00 39.13 4.17
3011 6845 3.374220 TTGCAATTCTTCTGCCTTGTG 57.626 42.857 0.00 0.00 39.13 3.33
3012 6846 4.159135 CCTATTGCAATTCTTCTGCCTTGT 59.841 41.667 18.75 0.00 39.13 3.16
3013 6847 4.679662 CCTATTGCAATTCTTCTGCCTTG 58.320 43.478 18.75 0.00 39.13 3.61
3014 6848 3.131755 GCCTATTGCAATTCTTCTGCCTT 59.868 43.478 18.75 0.00 39.13 4.35
3015 6849 2.692041 GCCTATTGCAATTCTTCTGCCT 59.308 45.455 18.75 0.00 39.13 4.75
3016 6850 2.223900 GGCCTATTGCAATTCTTCTGCC 60.224 50.000 18.75 15.60 43.89 4.85
3017 6851 2.223900 GGGCCTATTGCAATTCTTCTGC 60.224 50.000 18.75 10.87 43.89 4.26
3018 6852 3.025978 TGGGCCTATTGCAATTCTTCTG 58.974 45.455 18.75 1.62 43.89 3.02
3019 6853 3.026694 GTGGGCCTATTGCAATTCTTCT 58.973 45.455 18.75 0.00 43.89 2.85
3020 6854 2.760092 TGTGGGCCTATTGCAATTCTTC 59.240 45.455 18.75 5.69 43.89 2.87
3021 6855 2.818921 TGTGGGCCTATTGCAATTCTT 58.181 42.857 18.75 0.00 43.89 2.52
3022 6856 2.530460 TGTGGGCCTATTGCAATTCT 57.470 45.000 18.75 0.00 43.89 2.40
3023 6857 3.524541 CTTTGTGGGCCTATTGCAATTC 58.475 45.455 18.75 7.32 43.89 2.17
3024 6858 2.236893 CCTTTGTGGGCCTATTGCAATT 59.763 45.455 18.75 1.81 43.89 2.32
3025 6859 1.832998 CCTTTGTGGGCCTATTGCAAT 59.167 47.619 17.56 17.56 43.89 3.56
3026 6860 1.265236 CCTTTGTGGGCCTATTGCAA 58.735 50.000 4.53 0.00 43.89 4.08
3027 6861 1.257055 GCCTTTGTGGGCCTATTGCA 61.257 55.000 4.53 0.00 45.92 4.08
3028 6862 1.517361 GCCTTTGTGGGCCTATTGC 59.483 57.895 4.53 0.00 45.92 3.56
3036 6870 0.038166 TCTAAGCAGGCCTTTGTGGG 59.962 55.000 0.00 0.00 34.95 4.61
3037 6871 1.003580 TCTCTAAGCAGGCCTTTGTGG 59.996 52.381 0.00 0.00 34.95 4.17
3038 6872 2.354259 CTCTCTAAGCAGGCCTTTGTG 58.646 52.381 0.00 0.00 34.95 3.33
3039 6873 1.280421 CCTCTCTAAGCAGGCCTTTGT 59.720 52.381 0.00 0.00 34.95 2.83
3040 6874 1.556911 TCCTCTCTAAGCAGGCCTTTG 59.443 52.381 0.00 0.00 34.95 2.77
3041 6875 1.836802 CTCCTCTCTAAGCAGGCCTTT 59.163 52.381 0.00 0.00 34.95 3.11
3042 6876 1.494960 CTCCTCTCTAAGCAGGCCTT 58.505 55.000 0.00 0.00 37.57 4.35
3043 6877 1.048160 GCTCCTCTCTAAGCAGGCCT 61.048 60.000 0.00 0.00 38.42 5.19
3044 6878 1.048160 AGCTCCTCTCTAAGCAGGCC 61.048 60.000 0.00 0.00 41.06 5.19
3045 6879 0.389025 GAGCTCCTCTCTAAGCAGGC 59.611 60.000 0.87 0.00 41.06 4.85
3046 6880 0.667993 CGAGCTCCTCTCTAAGCAGG 59.332 60.000 8.47 0.00 41.06 4.85
3047 6881 1.333619 GTCGAGCTCCTCTCTAAGCAG 59.666 57.143 8.47 0.00 41.06 4.24
3048 6882 1.340114 TGTCGAGCTCCTCTCTAAGCA 60.340 52.381 8.47 0.00 41.06 3.91
3049 6883 1.064952 GTGTCGAGCTCCTCTCTAAGC 59.935 57.143 8.47 0.00 39.70 3.09
3050 6884 1.329292 CGTGTCGAGCTCCTCTCTAAG 59.671 57.143 8.47 0.00 39.70 2.18
3051 6885 1.370609 CGTGTCGAGCTCCTCTCTAA 58.629 55.000 8.47 0.00 39.70 2.10
3052 6886 0.462225 CCGTGTCGAGCTCCTCTCTA 60.462 60.000 8.47 0.00 39.70 2.43
3053 6887 1.747367 CCGTGTCGAGCTCCTCTCT 60.747 63.158 8.47 0.00 39.70 3.10
3054 6888 0.743701 TACCGTGTCGAGCTCCTCTC 60.744 60.000 8.47 1.77 38.47 3.20
3055 6889 0.745128 CTACCGTGTCGAGCTCCTCT 60.745 60.000 8.47 0.00 0.00 3.69
3056 6890 1.722677 CTACCGTGTCGAGCTCCTC 59.277 63.158 8.47 1.83 0.00 3.71
3057 6891 2.408241 GCTACCGTGTCGAGCTCCT 61.408 63.158 8.47 0.00 33.28 3.69
3058 6892 2.102553 GCTACCGTGTCGAGCTCC 59.897 66.667 8.47 0.00 33.28 4.70
3059 6893 2.102553 GGCTACCGTGTCGAGCTC 59.897 66.667 2.73 2.73 36.43 4.09
3060 6894 3.812019 CGGCTACCGTGTCGAGCT 61.812 66.667 0.00 0.00 42.73 4.09
3076 6910 2.589442 TTTATAAGCCCCGCCGCG 60.589 61.111 5.59 5.59 0.00 6.46
3077 6911 2.549198 GGTTTATAAGCCCCGCCGC 61.549 63.158 7.10 0.00 0.00 6.53
3078 6912 2.248835 CGGTTTATAAGCCCCGCCG 61.249 63.158 12.28 4.96 33.20 6.46
3079 6913 1.895231 CCGGTTTATAAGCCCCGCC 60.895 63.158 12.28 0.00 39.12 6.13
3080 6914 1.153107 ACCGGTTTATAAGCCCCGC 60.153 57.895 12.28 0.00 39.12 6.13
3081 6915 0.107557 ACACCGGTTTATAAGCCCCG 60.108 55.000 2.97 11.74 40.12 5.73
3082 6916 1.065272 TCACACCGGTTTATAAGCCCC 60.065 52.381 2.97 1.05 0.00 5.80
3083 6917 2.285977 CTCACACCGGTTTATAAGCCC 58.714 52.381 2.97 3.38 0.00 5.19
3084 6918 1.669265 GCTCACACCGGTTTATAAGCC 59.331 52.381 2.97 8.25 0.00 4.35
3085 6919 2.608090 GAGCTCACACCGGTTTATAAGC 59.392 50.000 2.97 10.26 0.00 3.09
3086 6920 3.195661 GGAGCTCACACCGGTTTATAAG 58.804 50.000 17.19 0.00 0.00 1.73
3087 6921 2.568062 TGGAGCTCACACCGGTTTATAA 59.432 45.455 17.19 0.00 0.00 0.98
3088 6922 2.093869 GTGGAGCTCACACCGGTTTATA 60.094 50.000 17.19 0.00 45.39 0.98
3089 6923 0.981183 TGGAGCTCACACCGGTTTAT 59.019 50.000 17.19 0.00 0.00 1.40
3090 6924 0.034337 GTGGAGCTCACACCGGTTTA 59.966 55.000 17.19 0.00 45.39 2.01
3091 6925 1.227853 GTGGAGCTCACACCGGTTT 60.228 57.895 17.19 0.00 45.39 3.27
3092 6926 2.426023 GTGGAGCTCACACCGGTT 59.574 61.111 17.19 0.00 45.39 4.44
3101 6935 2.615869 CTTGCTAGTTGAGTGGAGCTC 58.384 52.381 4.71 4.71 44.36 4.09
3102 6936 1.277557 CCTTGCTAGTTGAGTGGAGCT 59.722 52.381 0.00 0.00 35.89 4.09
3103 6937 1.002544 ACCTTGCTAGTTGAGTGGAGC 59.997 52.381 0.00 0.00 35.43 4.70
3104 6938 2.613977 CCACCTTGCTAGTTGAGTGGAG 60.614 54.545 13.36 0.00 46.15 3.86
3105 6939 1.347707 CCACCTTGCTAGTTGAGTGGA 59.652 52.381 13.36 0.00 46.15 4.02
3106 6940 1.611673 CCCACCTTGCTAGTTGAGTGG 60.612 57.143 12.18 12.18 43.52 4.00
3107 6941 1.347707 TCCCACCTTGCTAGTTGAGTG 59.652 52.381 0.00 0.00 0.00 3.51
3108 6942 1.348036 GTCCCACCTTGCTAGTTGAGT 59.652 52.381 0.00 0.00 0.00 3.41
3109 6943 1.625818 AGTCCCACCTTGCTAGTTGAG 59.374 52.381 0.00 0.00 0.00 3.02
3110 6944 1.729586 AGTCCCACCTTGCTAGTTGA 58.270 50.000 0.00 0.00 0.00 3.18
3111 6945 3.695830 TTAGTCCCACCTTGCTAGTTG 57.304 47.619 0.00 0.00 0.00 3.16
3112 6946 3.393278 TGTTTAGTCCCACCTTGCTAGTT 59.607 43.478 0.00 0.00 0.00 2.24
3113 6947 2.976882 TGTTTAGTCCCACCTTGCTAGT 59.023 45.455 0.00 0.00 0.00 2.57
3114 6948 3.695830 TGTTTAGTCCCACCTTGCTAG 57.304 47.619 0.00 0.00 0.00 3.42
3115 6949 4.202524 ACAATGTTTAGTCCCACCTTGCTA 60.203 41.667 0.00 0.00 0.00 3.49
3116 6950 3.157087 CAATGTTTAGTCCCACCTTGCT 58.843 45.455 0.00 0.00 0.00 3.91
3117 6951 2.890945 ACAATGTTTAGTCCCACCTTGC 59.109 45.455 0.00 0.00 0.00 4.01
3118 6952 3.888930 ACACAATGTTTAGTCCCACCTTG 59.111 43.478 0.00 0.00 0.00 3.61
3119 6953 4.178956 ACACAATGTTTAGTCCCACCTT 57.821 40.909 0.00 0.00 0.00 3.50
3120 6954 3.876309 ACACAATGTTTAGTCCCACCT 57.124 42.857 0.00 0.00 0.00 4.00
3121 6955 4.454504 CAGTACACAATGTTTAGTCCCACC 59.545 45.833 0.00 0.00 0.00 4.61
3122 6956 4.083484 GCAGTACACAATGTTTAGTCCCAC 60.083 45.833 0.00 0.00 0.00 4.61
3123 6957 4.069304 GCAGTACACAATGTTTAGTCCCA 58.931 43.478 0.00 0.00 0.00 4.37
3124 6958 3.124636 CGCAGTACACAATGTTTAGTCCC 59.875 47.826 0.00 0.00 0.00 4.46
3125 6959 3.124636 CCGCAGTACACAATGTTTAGTCC 59.875 47.826 0.00 0.00 0.00 3.85
3126 6960 3.124636 CCCGCAGTACACAATGTTTAGTC 59.875 47.826 0.00 0.00 0.00 2.59
3127 6961 3.071479 CCCGCAGTACACAATGTTTAGT 58.929 45.455 0.00 0.00 0.00 2.24
3128 6962 3.740044 CCCGCAGTACACAATGTTTAG 57.260 47.619 0.00 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.