Multiple sequence alignment - TraesCS3B01G024700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G024700 chr3B 100.000 2915 0 0 1 2915 10656637 10659551 0.000000e+00 5384.0
1 TraesCS3B01G024700 chr3B 83.436 1956 284 32 984 2915 556880165 556882104 0.000000e+00 1781.0
2 TraesCS3B01G024700 chr3B 82.720 353 24 17 280 606 10671653 10671994 2.210000e-71 279.0
3 TraesCS3B01G024700 chr3B 80.593 371 28 23 1 360 10649178 10649515 2.240000e-61 246.0
4 TraesCS3B01G024700 chr3B 78.979 333 24 24 424 722 10649519 10649839 4.960000e-43 185.0
5 TraesCS3B01G024700 chr2A 91.776 2140 150 11 801 2915 617654736 617652598 0.000000e+00 2953.0
6 TraesCS3B01G024700 chr2B 83.419 1948 295 26 985 2915 403549070 403551006 0.000000e+00 1783.0
7 TraesCS3B01G024700 chr2B 78.660 403 78 5 2311 2711 704323080 704323476 8.010000e-66 261.0
8 TraesCS3B01G024700 chr5A 81.312 1418 238 24 995 2393 21069515 21068106 0.000000e+00 1125.0
9 TraesCS3B01G024700 chr5A 89.077 531 56 2 2385 2915 21048653 21048125 0.000000e+00 658.0
10 TraesCS3B01G024700 chr3D 77.288 885 199 2 1000 1883 529120288 529119405 1.200000e-143 520.0
11 TraesCS3B01G024700 chr3D 91.498 247 13 3 550 796 8828621 8828859 1.670000e-87 333.0
12 TraesCS3B01G024700 chr3D 80.387 362 30 21 393 722 8778143 8778495 1.350000e-58 237.0
13 TraesCS3B01G024700 chr3D 76.688 459 51 34 6 443 8828016 8828439 1.370000e-48 204.0
14 TraesCS3B01G024700 chr3D 86.592 179 19 2 550 724 8726735 8726912 2.960000e-45 193.0
15 TraesCS3B01G024700 chr3D 84.762 105 7 6 81 185 8777676 8777771 2.390000e-16 97.1
16 TraesCS3B01G024700 chr3D 93.878 49 1 1 478 526 8828527 8828573 4.030000e-09 73.1
17 TraesCS3B01G024700 chr3D 97.561 41 1 0 486 526 8726650 8726690 1.450000e-08 71.3
18 TraesCS3B01G024700 chr3D 100.000 33 0 0 744 776 8778536 8778568 8.720000e-06 62.1
19 TraesCS3B01G024700 chr3A 83.643 269 21 16 466 724 12284836 12284581 6.280000e-57 231.0
20 TraesCS3B01G024700 chr3A 90.341 176 12 2 562 732 12255689 12255514 2.920000e-55 226.0
21 TraesCS3B01G024700 chr3A 92.357 157 6 6 371 526 12245228 12245077 4.890000e-53 219.0
22 TraesCS3B01G024700 chr3A 74.380 242 31 24 140 370 12256285 12256064 1.120000e-09 75.0
23 TraesCS3B01G024700 chr3A 95.349 43 1 1 327 369 12245408 12245367 1.870000e-07 67.6
24 TraesCS3B01G024700 chr7A 77.985 268 55 4 2320 2585 170591899 170591634 6.460000e-37 165.0
25 TraesCS3B01G024700 chr7A 76.703 279 54 10 2320 2590 642090429 642090154 8.420000e-31 145.0
26 TraesCS3B01G024700 chr1B 77.612 268 56 4 2320 2585 119133363 119133098 3.010000e-35 159.0
27 TraesCS3B01G024700 chr1B 77.491 271 57 4 2320 2588 318992040 318991772 3.010000e-35 159.0
28 TraesCS3B01G024700 chr4B 84.536 97 15 0 2527 2623 338442728 338442824 2.390000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G024700 chr3B 10656637 10659551 2914 False 5384.000000 5384 100.000000 1 2915 1 chr3B.!!$F1 2914
1 TraesCS3B01G024700 chr3B 556880165 556882104 1939 False 1781.000000 1781 83.436000 984 2915 1 chr3B.!!$F3 1931
2 TraesCS3B01G024700 chr3B 10649178 10649839 661 False 215.500000 246 79.786000 1 722 2 chr3B.!!$F4 721
3 TraesCS3B01G024700 chr2A 617652598 617654736 2138 True 2953.000000 2953 91.776000 801 2915 1 chr2A.!!$R1 2114
4 TraesCS3B01G024700 chr2B 403549070 403551006 1936 False 1783.000000 1783 83.419000 985 2915 1 chr2B.!!$F1 1930
5 TraesCS3B01G024700 chr5A 21068106 21069515 1409 True 1125.000000 1125 81.312000 995 2393 1 chr5A.!!$R2 1398
6 TraesCS3B01G024700 chr5A 21048125 21048653 528 True 658.000000 658 89.077000 2385 2915 1 chr5A.!!$R1 530
7 TraesCS3B01G024700 chr3D 529119405 529120288 883 True 520.000000 520 77.288000 1000 1883 1 chr3D.!!$R1 883
8 TraesCS3B01G024700 chr3D 8828016 8828859 843 False 203.366667 333 87.354667 6 796 3 chr3D.!!$F3 790

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
952 1146 0.032017 TAGGGTTCCTCAGGGAGAGC 60.032 60.0 0.0 0.0 43.29 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2064 2273 0.11456 AAGACGAACCTCCAGGGAGA 59.885 55.0 16.89 0.0 44.53 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.389948 CGTCCAGCTGGTCTAACCAC 60.390 60.000 31.58 19.12 44.79 4.16
46 47 1.152963 ACAACCAGCCAGCTCGTTT 60.153 52.632 0.00 0.00 0.00 3.60
66 67 5.400703 GTTTGTTCGTTACACTGGGAAAAA 58.599 37.500 0.00 0.00 36.21 1.94
67 68 5.838531 TTGTTCGTTACACTGGGAAAAAT 57.161 34.783 0.00 0.00 36.21 1.82
68 69 6.939132 TTGTTCGTTACACTGGGAAAAATA 57.061 33.333 0.00 0.00 36.21 1.40
69 70 6.303021 TGTTCGTTACACTGGGAAAAATAC 57.697 37.500 0.00 0.00 0.00 1.89
70 71 5.821470 TGTTCGTTACACTGGGAAAAATACA 59.179 36.000 0.00 0.00 0.00 2.29
71 72 5.927954 TCGTTACACTGGGAAAAATACAC 57.072 39.130 0.00 0.00 0.00 2.90
72 73 4.448395 TCGTTACACTGGGAAAAATACACG 59.552 41.667 0.00 0.00 0.00 4.49
73 74 4.377635 CGTTACACTGGGAAAAATACACGG 60.378 45.833 0.00 0.00 0.00 4.94
74 75 3.217681 ACACTGGGAAAAATACACGGT 57.782 42.857 0.00 0.00 0.00 4.83
75 76 3.143728 ACACTGGGAAAAATACACGGTC 58.856 45.455 0.00 0.00 0.00 4.79
111 112 3.473147 CAGAACATGCAGGCTAGCT 57.527 52.632 15.72 0.00 34.99 3.32
112 113 2.609427 CAGAACATGCAGGCTAGCTA 57.391 50.000 15.72 0.00 34.99 3.32
113 114 2.481854 CAGAACATGCAGGCTAGCTAG 58.518 52.381 16.84 16.84 34.99 3.42
114 115 2.114616 AGAACATGCAGGCTAGCTAGT 58.885 47.619 21.62 0.00 34.99 2.57
116 117 3.320541 AGAACATGCAGGCTAGCTAGTAG 59.679 47.826 21.62 12.62 34.99 2.57
118 119 2.625790 ACATGCAGGCTAGCTAGTAGAC 59.374 50.000 21.62 10.19 36.96 2.59
119 120 1.309950 TGCAGGCTAGCTAGTAGACG 58.690 55.000 21.62 7.81 42.47 4.18
120 121 1.310904 GCAGGCTAGCTAGTAGACGT 58.689 55.000 21.62 4.23 42.47 4.34
121 122 1.264826 GCAGGCTAGCTAGTAGACGTC 59.735 57.143 21.62 7.70 42.47 4.34
123 124 1.489649 AGGCTAGCTAGTAGACGTCCA 59.510 52.381 21.62 0.00 42.47 4.02
124 125 1.874872 GGCTAGCTAGTAGACGTCCAG 59.125 57.143 21.62 5.85 0.00 3.86
125 126 2.563702 GCTAGCTAGTAGACGTCCAGT 58.436 52.381 21.62 3.89 0.00 4.00
126 127 3.494048 GGCTAGCTAGTAGACGTCCAGTA 60.494 52.174 21.62 5.05 0.00 2.74
135 136 7.255312 GCTAGTAGACGTCCAGTAGTAGTAGTA 60.255 44.444 21.76 8.28 32.80 1.82
138 139 6.976636 AGACGTCCAGTAGTAGTAGTAAAC 57.023 41.667 13.01 0.00 0.00 2.01
185 196 6.564709 TGCCATCAAGATATGCAAGAATAC 57.435 37.500 0.00 0.00 0.00 1.89
186 197 6.063404 TGCCATCAAGATATGCAAGAATACA 58.937 36.000 0.00 0.00 0.00 2.29
187 198 6.717997 TGCCATCAAGATATGCAAGAATACAT 59.282 34.615 0.00 0.00 0.00 2.29
188 199 7.884354 TGCCATCAAGATATGCAAGAATACATA 59.116 33.333 0.00 0.00 33.52 2.29
189 200 8.396390 GCCATCAAGATATGCAAGAATACATAG 58.604 37.037 0.00 0.00 32.56 2.23
191 202 9.163899 CATCAAGATATGCAAGAATACATAGCT 57.836 33.333 0.00 0.00 44.92 3.32
193 204 9.866798 TCAAGATATGCAAGAATACATAGCTAG 57.133 33.333 0.00 0.00 42.88 3.42
194 205 9.096160 CAAGATATGCAAGAATACATAGCTAGG 57.904 37.037 3.34 3.34 42.88 3.02
196 207 4.687901 TGCAAGAATACATAGCTAGGCA 57.312 40.909 5.07 0.00 0.00 4.75
198 209 3.430218 GCAAGAATACATAGCTAGGCACG 59.570 47.826 5.07 0.00 0.00 5.34
199 210 3.305398 AGAATACATAGCTAGGCACGC 57.695 47.619 5.07 0.00 0.00 5.34
200 211 2.628178 AGAATACATAGCTAGGCACGCA 59.372 45.455 5.07 0.00 0.00 5.24
201 212 3.259374 AGAATACATAGCTAGGCACGCAT 59.741 43.478 5.07 0.00 0.00 4.73
202 213 3.685139 ATACATAGCTAGGCACGCATT 57.315 42.857 5.07 0.00 0.00 3.56
203 214 4.801330 ATACATAGCTAGGCACGCATTA 57.199 40.909 5.07 0.00 0.00 1.90
204 215 3.685139 ACATAGCTAGGCACGCATTAT 57.315 42.857 5.07 0.00 0.00 1.28
229 244 1.081242 CCAGGCGTGCATGTTCAAC 60.081 57.895 7.93 0.00 0.00 3.18
234 249 0.041312 GCGTGCATGTTCAACGAACT 60.041 50.000 7.93 0.00 42.39 3.01
245 260 4.681978 ACGAACTGCAGACCGGCC 62.682 66.667 23.35 0.00 0.00 6.13
265 280 2.086869 CGGCCTTGGCAGGAATATATG 58.913 52.381 14.04 0.00 44.19 1.78
278 324 5.182570 CAGGAATATATGGCACTCAACATGG 59.817 44.000 0.00 0.00 0.00 3.66
325 373 2.857152 TGCGTGCTTTTGTTCAATGAAC 59.143 40.909 18.42 18.42 42.26 3.18
360 408 1.880819 AAACTCCACGCGACGGGTAT 61.881 55.000 15.93 1.08 0.00 2.73
363 411 0.317603 CTCCACGCGACGGGTATTAG 60.318 60.000 15.93 10.94 0.00 1.73
364 412 1.031571 TCCACGCGACGGGTATTAGT 61.032 55.000 15.93 0.00 0.00 2.24
365 413 0.662619 CCACGCGACGGGTATTAGTA 59.337 55.000 15.93 0.00 0.00 1.82
366 414 1.334419 CCACGCGACGGGTATTAGTAG 60.334 57.143 15.93 3.39 0.00 2.57
368 416 2.017049 ACGCGACGGGTATTAGTAGTT 58.983 47.619 15.93 0.00 0.00 2.24
370 418 3.815401 ACGCGACGGGTATTAGTAGTTAT 59.185 43.478 15.93 0.00 0.00 1.89
372 420 5.468746 ACGCGACGGGTATTAGTAGTTATAA 59.531 40.000 15.93 0.00 0.00 0.98
373 421 5.790495 CGCGACGGGTATTAGTAGTTATAAC 59.210 44.000 0.00 7.57 0.00 1.89
374 422 6.565811 CGCGACGGGTATTAGTAGTTATAACA 60.566 42.308 17.65 1.42 0.00 2.41
375 423 6.798959 GCGACGGGTATTAGTAGTTATAACAG 59.201 42.308 17.65 0.00 0.00 3.16
376 424 7.301054 CGACGGGTATTAGTAGTTATAACAGG 58.699 42.308 17.65 0.00 0.00 4.00
377 425 6.986250 ACGGGTATTAGTAGTTATAACAGGC 58.014 40.000 17.65 7.09 0.00 4.85
383 433 9.257651 GTATTAGTAGTTATAACAGGCAACCAG 57.742 37.037 17.65 0.00 37.17 4.00
399 449 0.246360 CCAGCACTCCATCACGTACA 59.754 55.000 0.00 0.00 0.00 2.90
409 459 3.321396 TCCATCACGTACAACCACAGTAA 59.679 43.478 0.00 0.00 0.00 2.24
410 460 3.678072 CCATCACGTACAACCACAGTAAG 59.322 47.826 0.00 0.00 0.00 2.34
411 461 4.304110 CATCACGTACAACCACAGTAAGT 58.696 43.478 0.00 0.00 35.13 2.24
412 462 5.463286 CATCACGTACAACCACAGTAAGTA 58.537 41.667 0.00 0.00 33.48 2.24
452 508 2.536761 GCACATGCCAATATGCCATT 57.463 45.000 0.00 0.00 34.31 3.16
453 509 2.139917 GCACATGCCAATATGCCATTG 58.860 47.619 0.00 1.99 34.31 2.82
454 510 2.139917 CACATGCCAATATGCCATTGC 58.860 47.619 0.00 1.04 38.26 3.56
455 511 1.071071 ACATGCCAATATGCCATTGCC 59.929 47.619 0.00 0.00 36.33 4.52
456 512 1.070914 CATGCCAATATGCCATTGCCA 59.929 47.619 3.22 0.00 36.33 4.92
470 526 2.367030 TTGCCATGCAAGCAATGTAC 57.633 45.000 20.11 0.00 44.95 2.90
484 607 3.544244 GCAATGTACGCAAGCTAGCTAAC 60.544 47.826 19.70 12.22 45.62 2.34
516 639 3.766676 ACGTTGCATGTTAAACACACA 57.233 38.095 0.00 0.00 38.61 3.72
517 640 3.430931 ACGTTGCATGTTAAACACACAC 58.569 40.909 0.00 0.00 38.61 3.82
526 649 4.196193 TGTTAAACACACACTTAGCTGCT 58.804 39.130 7.57 7.57 0.00 4.24
528 651 5.465390 TGTTAAACACACACTTAGCTGCTAG 59.535 40.000 9.62 6.98 0.00 3.42
531 654 1.066573 CACACACTTAGCTGCTAGGCT 60.067 52.381 17.53 3.83 45.29 4.58
532 655 2.166459 CACACACTTAGCTGCTAGGCTA 59.834 50.000 17.53 0.00 42.97 3.93
534 657 2.035632 ACACTTAGCTGCTAGGCTAGG 58.964 52.381 22.40 8.42 44.23 3.02
536 659 1.337118 CTTAGCTGCTAGGCTAGGCT 58.663 55.000 23.67 23.67 44.23 4.58
537 660 2.158445 ACTTAGCTGCTAGGCTAGGCTA 60.158 50.000 23.36 23.36 44.23 3.93
538 661 2.208132 TAGCTGCTAGGCTAGGCTAG 57.792 55.000 36.89 36.89 42.97 3.42
539 662 0.480690 AGCTGCTAGGCTAGGCTAGA 59.519 55.000 42.16 29.30 41.16 2.43
540 663 0.601057 GCTGCTAGGCTAGGCTAGAC 59.399 60.000 42.16 33.62 0.00 2.59
541 664 1.253100 CTGCTAGGCTAGGCTAGACC 58.747 60.000 42.16 30.05 32.90 3.85
543 666 1.245376 GCTAGGCTAGGCTAGACCCG 61.245 65.000 42.16 25.03 40.58 5.28
544 667 1.228490 TAGGCTAGGCTAGACCCGC 60.228 63.158 23.74 8.93 40.58 6.13
545 668 2.003212 TAGGCTAGGCTAGACCCGCA 62.003 60.000 23.74 4.18 40.58 5.69
546 669 2.210711 GGCTAGGCTAGACCCGCAT 61.211 63.158 25.37 0.00 40.58 4.73
574 727 1.538204 CCACCCGTATCAACCGATCTG 60.538 57.143 0.00 0.00 32.73 2.90
600 758 4.973055 AGTAAACCACGCGGCGCA 62.973 61.111 32.61 7.29 34.57 6.09
684 854 1.153449 TCCGGAACATGGACGCATC 60.153 57.895 0.00 0.00 0.00 3.91
737 907 3.980646 TGAGGATTGTTTGAACCAACG 57.019 42.857 0.00 0.00 0.00 4.10
738 908 3.546724 TGAGGATTGTTTGAACCAACGA 58.453 40.909 0.00 0.00 0.00 3.85
739 909 3.563808 TGAGGATTGTTTGAACCAACGAG 59.436 43.478 0.00 0.00 0.00 4.18
740 910 2.293399 AGGATTGTTTGAACCAACGAGC 59.707 45.455 0.00 0.00 0.00 5.03
741 911 2.293399 GGATTGTTTGAACCAACGAGCT 59.707 45.455 0.00 0.00 0.00 4.09
788 958 3.058016 CCACATGTTTCACTGCCAACTAG 60.058 47.826 0.00 0.00 0.00 2.57
796 966 3.015145 TGCCAACTAGGGGAGGCC 61.015 66.667 12.49 0.00 46.45 5.19
797 967 2.692741 GCCAACTAGGGGAGGCCT 60.693 66.667 3.86 3.86 41.25 5.19
798 968 2.747443 GCCAACTAGGGGAGGCCTC 61.747 68.421 25.59 25.59 41.25 4.70
799 969 1.003573 CCAACTAGGGGAGGCCTCT 59.996 63.158 31.36 15.33 38.32 3.69
832 1002 1.067071 CGGCGACTTTAGGGTTTCTCT 60.067 52.381 0.00 0.00 0.00 3.10
844 1014 1.405121 GGTTTCTCTGTATTCCGGCGT 60.405 52.381 6.01 0.00 0.00 5.68
861 1031 0.446222 CGTTGATCGCCGGAATTGTT 59.554 50.000 5.05 0.00 0.00 2.83
863 1033 2.667171 CGTTGATCGCCGGAATTGTTTT 60.667 45.455 5.05 0.00 0.00 2.43
864 1034 3.313690 GTTGATCGCCGGAATTGTTTTT 58.686 40.909 5.05 0.00 0.00 1.94
865 1035 2.940147 TGATCGCCGGAATTGTTTTTG 58.060 42.857 5.05 0.00 0.00 2.44
866 1036 1.653609 GATCGCCGGAATTGTTTTTGC 59.346 47.619 5.05 0.00 0.00 3.68
897 1067 1.228306 CTCTCGCCCGATCTACCCT 60.228 63.158 0.00 0.00 0.00 4.34
902 1072 1.749033 GCCCGATCTACCCTTCAGG 59.251 63.158 0.00 0.00 43.78 3.86
909 1079 0.033405 TCTACCCTTCAGGACTCGGG 60.033 60.000 0.00 0.00 42.53 5.14
910 1080 2.531852 ACCCTTCAGGACTCGGGT 59.468 61.111 0.00 0.00 44.90 5.28
913 1083 1.977544 CCTTCAGGACTCGGGTCGT 60.978 63.158 9.83 7.17 42.97 4.34
914 1084 1.507174 CTTCAGGACTCGGGTCGTC 59.493 63.158 7.87 0.00 42.97 4.20
937 1131 1.476488 CGGCCTTGGTTTTTGATAGGG 59.524 52.381 0.00 0.00 0.00 3.53
940 1134 3.056107 GGCCTTGGTTTTTGATAGGGTTC 60.056 47.826 0.00 0.00 0.00 3.62
945 1139 4.662278 TGGTTTTTGATAGGGTTCCTCAG 58.338 43.478 0.00 0.00 34.61 3.35
952 1146 0.032017 TAGGGTTCCTCAGGGAGAGC 60.032 60.000 0.00 0.00 43.29 4.09
959 1154 2.123683 TCAGGGAGAGCGCTAGGG 60.124 66.667 11.50 1.65 35.26 3.53
964 1159 0.744771 GGGAGAGCGCTAGGGTTTTG 60.745 60.000 11.50 0.00 0.00 2.44
976 1171 0.729140 GGGTTTTGCGCAAGATCGTG 60.729 55.000 23.68 4.06 43.02 4.35
984 1179 1.227999 CGCAAGATCGTGGGTTGTGT 61.228 55.000 15.91 0.00 43.02 3.72
988 1183 0.321671 AGATCGTGGGTTGTGTCCAG 59.678 55.000 0.00 0.00 34.56 3.86
990 1185 0.321671 ATCGTGGGTTGTGTCCAGAG 59.678 55.000 0.00 0.00 34.56 3.35
1025 1220 1.792301 CGGAGTCGAGTACGCAGAA 59.208 57.895 12.77 0.00 39.00 3.02
1045 1240 2.943978 CGGCAGGGAAAGGAGTCGT 61.944 63.158 0.00 0.00 0.00 4.34
1072 1267 4.923415 AGAGTTACTTGCCAGGCTTAATT 58.077 39.130 14.15 4.51 0.00 1.40
1099 1300 7.830697 TGCAAGAAGAGGAAGATGATGATTTTA 59.169 33.333 0.00 0.00 0.00 1.52
1155 1356 1.180029 CAAAGTGGCTGGCTATTGCT 58.820 50.000 2.00 0.00 39.59 3.91
1186 1387 2.960819 CCACGAAGAGGTTTAGTCCTG 58.039 52.381 0.00 0.00 38.02 3.86
1187 1388 2.353803 CCACGAAGAGGTTTAGTCCTGG 60.354 54.545 0.00 0.00 38.02 4.45
1284 1487 5.349543 CCTTTTTACTGCTCAATTTGGATGC 59.650 40.000 0.00 0.52 0.00 3.91
1415 1618 3.204827 GCTGGCAGTATGGGCACG 61.205 66.667 17.16 0.00 38.55 5.34
1432 1635 2.807107 CGGATCCATCGCCTTCCCA 61.807 63.158 13.41 0.00 0.00 4.37
1560 1763 5.583854 CAGAGTAAGGGTGAAGATTGATGTG 59.416 44.000 0.00 0.00 0.00 3.21
1671 1876 0.605319 TCCACTGTGGTGAATTCGGC 60.605 55.000 25.15 0.00 45.61 5.54
1892 2098 0.532862 AACGCACAACCCACTGAGAG 60.533 55.000 0.00 0.00 0.00 3.20
1893 2099 1.069765 CGCACAACCCACTGAGAGT 59.930 57.895 0.00 0.00 0.00 3.24
1898 2104 1.417890 ACAACCCACTGAGAGTTGGAG 59.582 52.381 15.23 0.00 44.05 3.86
1929 2135 4.197750 CAGAATAGCAGGATCAGCAAACT 58.802 43.478 11.35 3.42 0.00 2.66
1930 2136 4.035324 CAGAATAGCAGGATCAGCAAACTG 59.965 45.833 11.35 10.18 45.95 3.16
1947 2153 3.469008 ACTGAATCGTTGTCAGGTGAA 57.531 42.857 14.26 0.00 45.66 3.18
1959 2165 0.250467 CAGGTGAAGGTGTGACAGGG 60.250 60.000 0.00 0.00 0.00 4.45
1967 2173 3.579302 TGTGACAGGGCCAAGGGG 61.579 66.667 6.18 0.00 37.18 4.79
1982 2188 3.391382 GGGGCCGAGTGTAGCTGT 61.391 66.667 0.00 0.00 0.00 4.40
1984 2190 1.141234 GGGCCGAGTGTAGCTGTAC 59.859 63.158 0.00 0.00 0.00 2.90
1985 2191 1.141234 GGCCGAGTGTAGCTGTACC 59.859 63.158 0.00 0.00 0.00 3.34
1990 2196 1.399440 CGAGTGTAGCTGTACCGCTTA 59.601 52.381 17.32 4.61 41.30 3.09
2082 2294 0.323908 CTCTCCCTGGAGGTTCGTCT 60.324 60.000 13.12 0.00 42.20 4.18
2110 2322 4.475919 TCAGGAGGATCAGATATGGTGA 57.524 45.455 0.00 0.00 36.25 4.02
2119 2331 1.072173 CAGATATGGTGAATCGGGGCA 59.928 52.381 0.00 0.00 0.00 5.36
2175 2387 4.715523 CCACCACGCCCACCGATT 62.716 66.667 0.00 0.00 41.02 3.34
2247 2461 8.210265 GGAAAGAGGAATATCTTGTTCTCTGAT 58.790 37.037 0.00 0.00 39.47 2.90
2298 2512 2.305635 GGAAGCAAATGGTGGGGAAAAT 59.694 45.455 0.00 0.00 0.00 1.82
2361 2575 3.499737 CGCCGGGCACAATGAGTC 61.500 66.667 20.71 0.00 0.00 3.36
2603 2817 8.806177 AAATAAAGTTGAATGTTTCCGGTTAC 57.194 30.769 0.00 1.03 0.00 2.50
2681 2895 5.240844 ACTTACTTGTGTTTATGGTGAAGCC 59.759 40.000 0.00 0.00 37.90 4.35
2682 2896 3.832527 ACTTGTGTTTATGGTGAAGCCT 58.167 40.909 0.00 0.00 38.35 4.58
2690 2904 2.570386 ATGGTGAAGCCTAGGTACCT 57.430 50.000 20.57 20.57 38.35 3.08
2765 2979 1.782752 CCATGGGTGGTTATGGGAGAT 59.217 52.381 2.85 0.00 40.11 2.75
2778 2992 8.966868 TGGTTATGGGAGATTTTAATGAAGTTC 58.033 33.333 0.00 0.00 0.00 3.01
2813 3027 0.622738 ATGATGGAGTGGGGCAGAGT 60.623 55.000 0.00 0.00 0.00 3.24
2855 3069 2.839486 TCAGGAGTGTGGTGAATGAC 57.161 50.000 0.00 0.00 0.00 3.06
2891 3105 0.252789 TGGGTTATTCTGGTCCGGGA 60.253 55.000 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.283793 CAAACGAGCTGGCTGGTTG 59.716 57.895 20.12 13.50 42.61 3.77
35 36 0.863144 TAACGAACAAACGAGCTGGC 59.137 50.000 0.00 0.00 37.03 4.85
46 47 5.821470 TGTATTTTTCCCAGTGTAACGAACA 59.179 36.000 0.00 0.00 45.86 3.18
66 67 1.304713 ACAGGACCGGACCGTGTAT 60.305 57.895 20.16 1.66 34.73 2.29
67 68 2.115910 ACAGGACCGGACCGTGTA 59.884 61.111 20.16 0.00 34.73 2.90
68 69 3.612681 CACAGGACCGGACCGTGT 61.613 66.667 26.52 22.30 33.42 4.49
69 70 3.282745 CTCACAGGACCGGACCGTG 62.283 68.421 27.86 27.86 36.54 4.94
70 71 2.989824 CTCACAGGACCGGACCGT 60.990 66.667 17.44 14.80 34.73 4.83
71 72 4.436998 GCTCACAGGACCGGACCG 62.437 72.222 17.44 6.99 34.73 4.79
72 73 4.436998 CGCTCACAGGACCGGACC 62.437 72.222 15.76 15.76 0.00 4.46
73 74 2.267681 CTACGCTCACAGGACCGGAC 62.268 65.000 9.46 0.00 0.00 4.79
74 75 2.034532 TACGCTCACAGGACCGGA 59.965 61.111 9.46 0.00 0.00 5.14
75 76 2.490217 CTACGCTCACAGGACCGG 59.510 66.667 0.00 0.00 0.00 5.28
104 105 1.874872 CTGGACGTCTACTAGCTAGCC 59.125 57.143 20.91 11.94 0.00 3.93
110 111 7.038154 ACTACTACTACTGGACGTCTACTAG 57.962 44.000 16.46 13.81 0.00 2.57
111 112 8.521170 TTACTACTACTACTGGACGTCTACTA 57.479 38.462 16.46 1.80 0.00 1.82
112 113 5.930837 ACTACTACTACTGGACGTCTACT 57.069 43.478 16.46 0.51 0.00 2.57
113 114 7.762159 AGTTTACTACTACTACTGGACGTCTAC 59.238 40.741 16.46 0.00 34.56 2.59
114 115 7.841956 AGTTTACTACTACTACTGGACGTCTA 58.158 38.462 16.46 8.77 34.56 2.59
116 117 6.976636 AGTTTACTACTACTACTGGACGTC 57.023 41.667 7.13 7.13 34.56 4.34
135 136 2.510691 CCATCGCCGGCGTAGTTT 60.511 61.111 44.16 23.74 40.74 2.66
153 154 5.566230 GCATATCTTGATGGCATCTTTTCCC 60.566 44.000 26.49 1.04 0.00 3.97
185 196 6.313658 TCAAATATAATGCGTGCCTAGCTATG 59.686 38.462 0.00 0.00 35.28 2.23
186 197 6.313905 GTCAAATATAATGCGTGCCTAGCTAT 59.686 38.462 0.00 0.00 35.28 2.97
187 198 5.637810 GTCAAATATAATGCGTGCCTAGCTA 59.362 40.000 0.00 0.00 35.28 3.32
188 199 4.452455 GTCAAATATAATGCGTGCCTAGCT 59.548 41.667 0.00 0.00 35.28 3.32
189 200 4.378459 GGTCAAATATAATGCGTGCCTAGC 60.378 45.833 0.00 0.00 0.00 3.42
191 202 4.709250 TGGTCAAATATAATGCGTGCCTA 58.291 39.130 0.00 0.00 0.00 3.93
192 203 3.550820 TGGTCAAATATAATGCGTGCCT 58.449 40.909 0.00 0.00 0.00 4.75
193 204 3.304659 CCTGGTCAAATATAATGCGTGCC 60.305 47.826 0.00 0.00 0.00 5.01
194 205 3.853307 GCCTGGTCAAATATAATGCGTGC 60.853 47.826 0.00 0.00 0.00 5.34
196 207 2.548057 CGCCTGGTCAAATATAATGCGT 59.452 45.455 0.00 0.00 35.22 5.24
198 209 3.853307 GCACGCCTGGTCAAATATAATGC 60.853 47.826 0.00 0.00 0.00 3.56
199 210 3.314913 TGCACGCCTGGTCAAATATAATG 59.685 43.478 0.00 0.00 0.00 1.90
200 211 3.550820 TGCACGCCTGGTCAAATATAAT 58.449 40.909 0.00 0.00 0.00 1.28
201 212 2.992593 TGCACGCCTGGTCAAATATAA 58.007 42.857 0.00 0.00 0.00 0.98
202 213 2.700722 TGCACGCCTGGTCAAATATA 57.299 45.000 0.00 0.00 0.00 0.86
203 214 1.677576 CATGCACGCCTGGTCAAATAT 59.322 47.619 0.00 0.00 0.00 1.28
204 215 1.093972 CATGCACGCCTGGTCAAATA 58.906 50.000 0.00 0.00 0.00 1.40
245 260 2.086869 CATATATTCCTGCCAAGGCCG 58.913 52.381 8.89 1.56 44.11 6.13
246 261 2.450476 CCATATATTCCTGCCAAGGCC 58.550 52.381 8.89 0.00 44.11 5.19
247 262 1.821136 GCCATATATTCCTGCCAAGGC 59.179 52.381 3.61 3.61 44.11 4.35
248 263 2.821969 GTGCCATATATTCCTGCCAAGG 59.178 50.000 0.00 0.00 46.06 3.61
256 271 5.048504 CACCATGTTGAGTGCCATATATTCC 60.049 44.000 0.00 0.00 0.00 3.01
268 283 1.475280 GCATCATGCACCATGTTGAGT 59.525 47.619 4.20 0.00 44.26 3.41
269 284 2.203800 GCATCATGCACCATGTTGAG 57.796 50.000 4.20 3.74 44.26 3.02
325 373 0.238289 GTTTGGATCATATGCCGCCG 59.762 55.000 0.00 0.00 0.00 6.46
360 408 6.110707 GCTGGTTGCCTGTTATAACTACTAA 58.889 40.000 16.33 4.88 35.15 2.24
363 411 4.094442 GTGCTGGTTGCCTGTTATAACTAC 59.906 45.833 16.33 6.65 42.00 2.73
364 412 4.019681 AGTGCTGGTTGCCTGTTATAACTA 60.020 41.667 16.33 2.90 42.00 2.24
365 413 3.081804 GTGCTGGTTGCCTGTTATAACT 58.918 45.455 16.33 0.00 42.00 2.24
366 414 3.081804 AGTGCTGGTTGCCTGTTATAAC 58.918 45.455 8.75 8.75 42.00 1.89
368 416 2.355716 GGAGTGCTGGTTGCCTGTTATA 60.356 50.000 0.00 0.00 42.00 0.98
370 418 0.250727 GGAGTGCTGGTTGCCTGTTA 60.251 55.000 0.00 0.00 42.00 2.41
372 420 2.072874 ATGGAGTGCTGGTTGCCTGT 62.073 55.000 0.00 0.00 42.00 4.00
373 421 1.303888 ATGGAGTGCTGGTTGCCTG 60.304 57.895 0.00 0.00 42.00 4.85
374 422 1.001641 GATGGAGTGCTGGTTGCCT 60.002 57.895 0.00 0.00 42.00 4.75
375 423 1.303561 TGATGGAGTGCTGGTTGCC 60.304 57.895 0.00 0.00 42.00 4.52
376 424 1.878775 GTGATGGAGTGCTGGTTGC 59.121 57.895 0.00 0.00 43.25 4.17
377 425 0.603707 ACGTGATGGAGTGCTGGTTG 60.604 55.000 0.00 0.00 0.00 3.77
383 433 1.076332 GGTTGTACGTGATGGAGTGC 58.924 55.000 0.00 0.00 0.00 4.40
391 441 4.337836 TGTACTTACTGTGGTTGTACGTGA 59.662 41.667 0.00 0.00 37.18 4.35
399 449 5.937111 AGGTCAAATGTACTTACTGTGGTT 58.063 37.500 0.00 0.00 0.00 3.67
409 459 4.270008 GCCATTGGTAGGTCAAATGTACT 58.730 43.478 4.26 0.00 0.00 2.73
410 460 3.064820 CGCCATTGGTAGGTCAAATGTAC 59.935 47.826 4.26 0.00 0.00 2.90
411 461 3.275143 CGCCATTGGTAGGTCAAATGTA 58.725 45.455 4.26 0.00 0.00 2.29
412 462 2.091541 CGCCATTGGTAGGTCAAATGT 58.908 47.619 4.26 0.00 0.00 2.71
452 508 0.170784 CGTACATTGCTTGCATGGCA 59.829 50.000 10.24 10.24 37.97 4.92
453 509 1.141591 GCGTACATTGCTTGCATGGC 61.142 55.000 1.34 3.56 0.00 4.40
454 510 0.170784 TGCGTACATTGCTTGCATGG 59.829 50.000 1.34 0.00 0.00 3.66
455 511 1.915350 CTTGCGTACATTGCTTGCATG 59.085 47.619 0.00 0.00 35.20 4.06
456 512 1.733389 GCTTGCGTACATTGCTTGCAT 60.733 47.619 0.00 0.00 35.20 3.96
466 522 3.057104 TCTTGTTAGCTAGCTTGCGTACA 60.057 43.478 24.88 19.93 38.13 2.90
470 526 3.001736 GGAATCTTGTTAGCTAGCTTGCG 59.998 47.826 24.88 7.64 38.13 4.85
484 607 4.985413 ACATGCAACGTATTGGAATCTTG 58.015 39.130 0.00 0.00 39.86 3.02
516 639 1.044611 GCCTAGCCTAGCAGCTAAGT 58.955 55.000 3.09 0.00 44.49 2.24
517 640 1.337118 AGCCTAGCCTAGCAGCTAAG 58.663 55.000 3.09 0.00 44.49 2.18
526 649 1.228490 GCGGGTCTAGCCTAGCCTA 60.228 63.158 10.66 0.00 35.79 3.93
528 651 2.210711 ATGCGGGTCTAGCCTAGCC 61.211 63.158 15.35 0.00 39.07 3.93
531 654 3.870955 CCATGCGGGTCTAGCCTA 58.129 61.111 3.66 0.00 37.43 3.93
551 674 0.323633 TCGGTTGATACGGGTGGAGA 60.324 55.000 0.00 0.00 0.00 3.71
560 713 2.159099 TGCTCCACAGATCGGTTGATAC 60.159 50.000 0.00 0.00 34.09 2.24
574 727 1.334689 GCGTGGTTTACTTTGCTCCAC 60.335 52.381 0.00 0.00 43.27 4.02
600 758 0.894141 CATGCGGATCTAGCCTAGCT 59.106 55.000 10.35 0.00 43.41 3.32
706 876 2.086869 ACAATCCTCAAGATGCGGTTG 58.913 47.619 0.00 0.00 34.56 3.77
737 907 3.541713 CACTCCCGCCCCTAGCTC 61.542 72.222 0.00 0.00 40.39 4.09
738 908 4.075793 TCACTCCCGCCCCTAGCT 62.076 66.667 0.00 0.00 40.39 3.32
739 909 3.851128 GTCACTCCCGCCCCTAGC 61.851 72.222 0.00 0.00 38.52 3.42
740 910 2.363795 TGTCACTCCCGCCCCTAG 60.364 66.667 0.00 0.00 0.00 3.02
741 911 2.363795 CTGTCACTCCCGCCCCTA 60.364 66.667 0.00 0.00 0.00 3.53
788 958 2.684104 GGGAAAAGAGGCCTCCCC 59.316 66.667 29.54 26.52 42.77 4.81
832 1002 2.966324 CGATCAACGCCGGAATACA 58.034 52.632 5.05 0.00 34.51 2.29
844 1014 3.312828 CAAAAACAATTCCGGCGATCAA 58.687 40.909 9.30 0.00 0.00 2.57
866 1036 1.445095 CGAGAGAATCAGCCAGGGG 59.555 63.158 0.00 0.00 37.82 4.79
873 1043 0.958091 AGATCGGGCGAGAGAATCAG 59.042 55.000 0.00 0.00 37.82 2.90
897 1067 3.677527 GACGACCCGAGTCCTGAA 58.322 61.111 0.00 0.00 40.12 3.02
913 1083 1.834822 CAAAAACCAAGGCCGGGGA 60.835 57.895 20.92 0.00 0.00 4.81
914 1084 1.191489 ATCAAAAACCAAGGCCGGGG 61.191 55.000 19.12 16.44 0.00 5.73
937 1131 1.038130 TAGCGCTCTCCCTGAGGAAC 61.038 60.000 16.34 0.00 43.40 3.62
940 1134 2.199652 CCTAGCGCTCTCCCTGAGG 61.200 68.421 16.34 9.94 42.87 3.86
945 1139 0.744771 CAAAACCCTAGCGCTCTCCC 60.745 60.000 16.34 0.00 0.00 4.30
959 1154 0.729140 CCCACGATCTTGCGCAAAAC 60.729 55.000 25.01 16.08 33.86 2.43
964 1159 2.325082 ACAACCCACGATCTTGCGC 61.325 57.895 0.00 0.00 33.86 6.09
966 1161 0.517316 GACACAACCCACGATCTTGC 59.483 55.000 0.00 0.00 0.00 4.01
968 1163 0.762418 TGGACACAACCCACGATCTT 59.238 50.000 0.00 0.00 0.00 2.40
976 1171 2.897969 TCTTCTACTCTGGACACAACCC 59.102 50.000 0.00 0.00 0.00 4.11
984 1179 2.690497 CGCCATCTTCTTCTACTCTGGA 59.310 50.000 0.00 0.00 0.00 3.86
988 1183 1.859383 GCCGCCATCTTCTTCTACTC 58.141 55.000 0.00 0.00 0.00 2.59
990 1185 0.876342 CCGCCGCCATCTTCTTCTAC 60.876 60.000 0.00 0.00 0.00 2.59
1025 1220 2.930562 ACTCCTTTCCCTGCCGCT 60.931 61.111 0.00 0.00 0.00 5.52
1045 1240 1.275291 CCTGGCAAGTAACTCTTCCGA 59.725 52.381 0.00 0.00 33.63 4.55
1072 1267 5.169992 TCATCATCTTCCTCTTCTTGCAA 57.830 39.130 0.00 0.00 0.00 4.08
1099 1300 1.765657 GCAGCTCCTCCTCCCAGAT 60.766 63.158 0.00 0.00 0.00 2.90
1149 1350 2.166870 CGTGGTGTGTACCCTAGCAATA 59.833 50.000 0.00 0.00 46.96 1.90
1155 1356 2.165167 CTCTTCGTGGTGTGTACCCTA 58.835 52.381 0.00 0.00 46.96 3.53
1179 1380 2.488528 CCCGTATAGAGCACCAGGACTA 60.489 54.545 0.00 0.00 0.00 2.59
1186 1387 1.000955 CATGTCCCCGTATAGAGCACC 59.999 57.143 0.00 0.00 0.00 5.01
1187 1388 1.687123 ACATGTCCCCGTATAGAGCAC 59.313 52.381 0.00 0.00 0.00 4.40
1215 1417 3.200522 GGCTTTGCCGGATTCCAG 58.799 61.111 5.05 0.00 39.62 3.86
1284 1487 1.276138 GCTTTGTTCCAATCCCCCAAG 59.724 52.381 0.00 0.00 0.00 3.61
1415 1618 0.819666 GTTGGGAAGGCGATGGATCC 60.820 60.000 4.20 4.20 0.00 3.36
1432 1635 3.716601 CCGGCTCAATCAAAAAGTTGTT 58.283 40.909 0.00 0.00 36.07 2.83
1560 1763 1.760192 ACCTCTTGATCTTGGCATGC 58.240 50.000 9.90 9.90 0.00 4.06
1671 1876 1.100510 CACACTCCTCATGCCAATGG 58.899 55.000 0.00 0.00 34.30 3.16
1852 2057 1.543802 GAAACGCCATGGTTGATTGGA 59.456 47.619 14.67 0.00 34.81 3.53
1929 2135 2.104111 ACCTTCACCTGACAACGATTCA 59.896 45.455 0.00 0.00 0.00 2.57
1930 2136 2.480419 CACCTTCACCTGACAACGATTC 59.520 50.000 0.00 0.00 0.00 2.52
1932 2138 1.416401 ACACCTTCACCTGACAACGAT 59.584 47.619 0.00 0.00 0.00 3.73
1947 2153 2.833913 CCTTGGCCCTGTCACACCT 61.834 63.158 0.00 0.00 0.00 4.00
1967 2173 1.141234 GGTACAGCTACACTCGGCC 59.859 63.158 0.00 0.00 0.00 6.13
1982 2188 5.013287 TCCAAGGCCATATTATTAAGCGGTA 59.987 40.000 5.01 0.00 0.00 4.02
1984 2190 4.331968 TCCAAGGCCATATTATTAAGCGG 58.668 43.478 5.01 0.00 0.00 5.52
1985 2191 5.003804 ACTCCAAGGCCATATTATTAAGCG 58.996 41.667 5.01 0.00 0.00 4.68
1990 2196 5.835280 CCAAAGACTCCAAGGCCATATTATT 59.165 40.000 5.01 0.00 0.00 1.40
2031 2240 6.209192 TCTCTGCAGATTGCCTTTTATTTGAA 59.791 34.615 18.63 0.00 44.23 2.69
2055 2264 3.108376 ACCTCCAGGGAGAGTATTGTTC 58.892 50.000 16.89 0.00 44.53 3.18
2058 2267 2.101582 CGAACCTCCAGGGAGAGTATTG 59.898 54.545 16.89 1.47 44.53 1.90
2064 2273 0.114560 AAGACGAACCTCCAGGGAGA 59.885 55.000 16.89 0.00 44.53 3.71
2082 2294 6.723515 CCATATCTGATCCTCCTGAACTAGAA 59.276 42.308 0.00 0.00 0.00 2.10
2110 2322 2.186903 CGCTGTAGTGCCCCGATT 59.813 61.111 0.00 0.00 0.00 3.34
2119 2331 5.773680 TCTCCCTTATAATAAGCGCTGTAGT 59.226 40.000 12.58 7.73 0.00 2.73
2165 2377 2.433436 GGGATACATAAATCGGTGGGC 58.567 52.381 0.00 0.00 39.74 5.36
2169 2381 3.977999 TCCTTGGGGATACATAAATCGGT 59.022 43.478 0.00 0.00 36.57 4.69
2173 2385 5.075067 CCTCCTTCCTTGGGGATACATAAAT 59.925 44.000 0.00 0.00 41.87 1.40
2175 2387 3.980698 CCTCCTTCCTTGGGGATACATAA 59.019 47.826 0.00 0.00 41.87 1.90
2223 2435 8.766476 TCATCAGAGAACAAGATATTCCTCTTT 58.234 33.333 0.00 0.00 33.18 2.52
2247 2461 0.179234 TCCGTTCAACAGCCTGTTCA 59.821 50.000 7.22 0.00 38.77 3.18
2298 2512 5.991606 CGATCCAGCAATTTCCTTATCAGTA 59.008 40.000 0.00 0.00 0.00 2.74
2361 2575 1.284657 CGACAGTTCCAGCATAGCAG 58.715 55.000 0.00 0.00 0.00 4.24
2477 2691 4.389077 CCCTTCAGTTTCTCAACACGTATC 59.611 45.833 0.00 0.00 35.05 2.24
2486 2700 4.528596 CCTAGTTCTCCCTTCAGTTTCTCA 59.471 45.833 0.00 0.00 0.00 3.27
2537 2751 1.305381 ACCTCCACTTCTCCCCTCG 60.305 63.158 0.00 0.00 0.00 4.63
2586 2800 6.527423 ACTTAGAGTAACCGGAAACATTCAA 58.473 36.000 9.46 0.00 0.00 2.69
2591 2805 4.832266 TGGTACTTAGAGTAACCGGAAACA 59.168 41.667 9.46 0.00 37.60 2.83
2597 2811 7.328737 GCATCAATATGGTACTTAGAGTAACCG 59.671 40.741 1.06 0.00 37.60 4.44
2690 2904 7.037873 AGTGTGTCCCATGTTTTATACCTCTTA 60.038 37.037 0.00 0.00 0.00 2.10
2778 2992 5.608449 TCCATCATGCTCTCTCAAATGTAG 58.392 41.667 0.00 0.00 0.00 2.74
2780 2994 4.080469 ACTCCATCATGCTCTCTCAAATGT 60.080 41.667 0.00 0.00 0.00 2.71
2813 3027 3.700538 AGCATCAATTTGTCCTTGGCTA 58.299 40.909 0.00 0.00 0.00 3.93
2855 3069 4.457496 ACATCGACCAGGGCGCAG 62.457 66.667 11.03 7.32 0.00 5.18
2891 3105 4.382147 GCTACCTTCTTCTCGAAAGTCCAT 60.382 45.833 7.07 0.00 29.45 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.