Multiple sequence alignment - TraesCS3B01G023900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G023900 chr3B 100.000 5692 0 0 1 5692 10230065 10235756 0.000000e+00 10512.0
1 TraesCS3B01G023900 chr3B 96.241 2341 36 18 1 2295 132169761 132167427 0.000000e+00 3788.0
2 TraesCS3B01G023900 chr3B 95.871 2349 40 13 1 2294 796294770 796292424 0.000000e+00 3747.0
3 TraesCS3B01G023900 chr3B 94.512 911 13 7 1418 2293 796303682 796302774 0.000000e+00 1371.0
4 TraesCS3B01G023900 chr3B 97.036 641 9 5 1 631 132186874 132186234 0.000000e+00 1070.0
5 TraesCS3B01G023900 chr7D 90.746 2345 130 28 1 2265 383934656 383932319 0.000000e+00 3048.0
6 TraesCS3B01G023900 chr7D 90.665 2346 130 28 1 2265 383922754 383920417 0.000000e+00 3037.0
7 TraesCS3B01G023900 chr7D 90.460 2348 131 36 1 2265 207841217 207843554 0.000000e+00 3009.0
8 TraesCS3B01G023900 chr7D 90.252 2339 145 33 1 2265 368315607 368313278 0.000000e+00 2979.0
9 TraesCS3B01G023900 chr7D 90.204 2348 135 33 1 2265 207869042 207871377 0.000000e+00 2974.0
10 TraesCS3B01G023900 chr1D 90.757 2337 135 32 1 2265 416106723 416104396 0.000000e+00 3044.0
11 TraesCS3B01G023900 chr1D 93.834 1038 35 6 1 1011 484237447 484236412 0.000000e+00 1535.0
12 TraesCS3B01G023900 chr3D 90.641 2340 136 34 1 2265 518144122 518146453 0.000000e+00 3031.0
13 TraesCS3B01G023900 chr3D 89.424 2099 185 19 2891 4970 8364214 8366294 0.000000e+00 2612.0
14 TraesCS3B01G023900 chr3D 90.287 1081 92 7 3896 4971 8332989 8331917 0.000000e+00 1402.0
15 TraesCS3B01G023900 chr3D 89.144 654 43 13 5056 5692 8366675 8367317 0.000000e+00 789.0
16 TraesCS3B01G023900 chr3D 96.703 273 9 0 4989 5261 8331472 8331200 6.720000e-124 455.0
17 TraesCS3B01G023900 chr3D 89.062 320 28 4 5373 5692 8331089 8330777 1.920000e-104 390.0
18 TraesCS3B01G023900 chr3D 94.444 54 3 0 5585 5638 8330827 8330774 3.650000e-12 84.2
19 TraesCS3B01G023900 chr5D 90.598 2340 138 34 1 2265 28036045 28038377 0.000000e+00 3027.0
20 TraesCS3B01G023900 chr2D 90.376 2338 143 33 1 2265 143554648 143552320 0.000000e+00 2996.0
21 TraesCS3B01G023900 chr2D 90.261 2341 143 30 1 2265 143544348 143542017 0.000000e+00 2981.0
22 TraesCS3B01G023900 chr6A 88.220 2360 177 41 1 2273 79436219 79433874 0.000000e+00 2724.0
23 TraesCS3B01G023900 chr6A 87.373 2067 161 44 290 2270 79425334 79423282 0.000000e+00 2279.0
24 TraesCS3B01G023900 chr4B 88.516 2203 160 37 142 2265 251306910 251304722 0.000000e+00 2580.0
25 TraesCS3B01G023900 chr4B 93.278 729 31 6 1 719 251296882 251296162 0.000000e+00 1059.0
26 TraesCS3B01G023900 chr1A 88.109 1539 123 28 775 2268 49377770 49379293 0.000000e+00 1773.0
27 TraesCS3B01G023900 chr4A 87.724 1564 126 32 775 2292 488780445 488781988 0.000000e+00 1764.0
28 TraesCS3B01G023900 chr4A 86.081 273 26 11 2029 2294 633939591 633939858 3.360000e-72 283.0
29 TraesCS3B01G023900 chr3A 91.133 1094 86 8 3677 4766 12484940 12486026 0.000000e+00 1472.0
30 TraesCS3B01G023900 chr3A 86.677 1291 93 34 1037 2281 697488131 697489388 0.000000e+00 1358.0
31 TraesCS3B01G023900 chr3A 84.052 696 53 25 4975 5639 12486337 12487005 8.100000e-173 617.0
32 TraesCS3B01G023900 chr3A 89.451 237 15 7 4534 4766 12455156 12454926 2.010000e-74 291.0
33 TraesCS3B01G023900 chr3A 83.200 250 28 10 2364 2606 12483989 12484231 3.450000e-52 217.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G023900 chr3B 10230065 10235756 5691 False 10512.000000 10512 100.000000 1 5692 1 chr3B.!!$F1 5691
1 TraesCS3B01G023900 chr3B 132167427 132169761 2334 True 3788.000000 3788 96.241000 1 2295 1 chr3B.!!$R1 2294
2 TraesCS3B01G023900 chr3B 796292424 796294770 2346 True 3747.000000 3747 95.871000 1 2294 1 chr3B.!!$R3 2293
3 TraesCS3B01G023900 chr3B 796302774 796303682 908 True 1371.000000 1371 94.512000 1418 2293 1 chr3B.!!$R4 875
4 TraesCS3B01G023900 chr3B 132186234 132186874 640 True 1070.000000 1070 97.036000 1 631 1 chr3B.!!$R2 630
5 TraesCS3B01G023900 chr7D 383932319 383934656 2337 True 3048.000000 3048 90.746000 1 2265 1 chr7D.!!$R3 2264
6 TraesCS3B01G023900 chr7D 383920417 383922754 2337 True 3037.000000 3037 90.665000 1 2265 1 chr7D.!!$R2 2264
7 TraesCS3B01G023900 chr7D 207841217 207843554 2337 False 3009.000000 3009 90.460000 1 2265 1 chr7D.!!$F1 2264
8 TraesCS3B01G023900 chr7D 368313278 368315607 2329 True 2979.000000 2979 90.252000 1 2265 1 chr7D.!!$R1 2264
9 TraesCS3B01G023900 chr7D 207869042 207871377 2335 False 2974.000000 2974 90.204000 1 2265 1 chr7D.!!$F2 2264
10 TraesCS3B01G023900 chr1D 416104396 416106723 2327 True 3044.000000 3044 90.757000 1 2265 1 chr1D.!!$R1 2264
11 TraesCS3B01G023900 chr1D 484236412 484237447 1035 True 1535.000000 1535 93.834000 1 1011 1 chr1D.!!$R2 1010
12 TraesCS3B01G023900 chr3D 518144122 518146453 2331 False 3031.000000 3031 90.641000 1 2265 1 chr3D.!!$F1 2264
13 TraesCS3B01G023900 chr3D 8364214 8367317 3103 False 1700.500000 2612 89.284000 2891 5692 2 chr3D.!!$F2 2801
14 TraesCS3B01G023900 chr3D 8330774 8332989 2215 True 582.800000 1402 92.624000 3896 5692 4 chr3D.!!$R1 1796
15 TraesCS3B01G023900 chr5D 28036045 28038377 2332 False 3027.000000 3027 90.598000 1 2265 1 chr5D.!!$F1 2264
16 TraesCS3B01G023900 chr2D 143552320 143554648 2328 True 2996.000000 2996 90.376000 1 2265 1 chr2D.!!$R2 2264
17 TraesCS3B01G023900 chr2D 143542017 143544348 2331 True 2981.000000 2981 90.261000 1 2265 1 chr2D.!!$R1 2264
18 TraesCS3B01G023900 chr6A 79433874 79436219 2345 True 2724.000000 2724 88.220000 1 2273 1 chr6A.!!$R2 2272
19 TraesCS3B01G023900 chr6A 79423282 79425334 2052 True 2279.000000 2279 87.373000 290 2270 1 chr6A.!!$R1 1980
20 TraesCS3B01G023900 chr4B 251304722 251306910 2188 True 2580.000000 2580 88.516000 142 2265 1 chr4B.!!$R2 2123
21 TraesCS3B01G023900 chr4B 251296162 251296882 720 True 1059.000000 1059 93.278000 1 719 1 chr4B.!!$R1 718
22 TraesCS3B01G023900 chr1A 49377770 49379293 1523 False 1773.000000 1773 88.109000 775 2268 1 chr1A.!!$F1 1493
23 TraesCS3B01G023900 chr4A 488780445 488781988 1543 False 1764.000000 1764 87.724000 775 2292 1 chr4A.!!$F1 1517
24 TraesCS3B01G023900 chr3A 697488131 697489388 1257 False 1358.000000 1358 86.677000 1037 2281 1 chr3A.!!$F1 1244
25 TraesCS3B01G023900 chr3A 12483989 12487005 3016 False 768.666667 1472 86.128333 2364 5639 3 chr3A.!!$F2 3275

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
469 471 0.962356 GTGACTCCTACGGGTCCGAA 60.962 60.0 16.90 0.0 42.83 4.30 F
1885 1976 1.342074 AGTACAGCAGTGGCAGAAGA 58.658 50.0 0.00 0.0 44.61 2.87 F
2514 2675 0.321919 TGGATTGCCTCTCAGCACAC 60.322 55.0 0.00 0.0 43.97 3.82 F
3581 4079 0.255890 TTCCCTATGCAAGGCCAGTC 59.744 55.0 5.01 0.0 45.03 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2353 2513 0.918983 CCAATGCTTGAGGGACCCTA 59.081 55.0 14.87 0.0 31.76 3.53 R
3342 3839 0.475906 CAGGATGGGGAATGGACTCC 59.524 60.0 0.00 0.0 34.41 3.85 R
3668 4166 0.596600 CATATGGCCTAACGCGTCGT 60.597 55.0 14.44 3.1 43.97 4.34 R
5387 6631 0.570734 CGACCGCGCAATGTAAGTAG 59.429 55.0 8.75 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
469 471 0.962356 GTGACTCCTACGGGTCCGAA 60.962 60.000 16.90 0.00 42.83 4.30
758 815 3.895232 TCTCTGCTATCCCAAGAACAC 57.105 47.619 0.00 0.00 0.00 3.32
831 893 4.460683 CGATTTGCCCCGTCCGGA 62.461 66.667 0.00 0.00 37.50 5.14
1350 1418 7.387265 AATCTATGGTGTGGTCATGGTATTA 57.613 36.000 0.00 0.00 0.00 0.98
1730 1810 8.468720 TTTGTTCTTTTTACAGCAAGGTAAAC 57.531 30.769 7.58 0.20 41.51 2.01
1885 1976 1.342074 AGTACAGCAGTGGCAGAAGA 58.658 50.000 0.00 0.00 44.61 2.87
1893 1984 2.555757 GCAGTGGCAGAAGATGAAAAGT 59.444 45.455 0.00 0.00 40.72 2.66
2300 2460 8.745464 TTTTTACGGTTTTTACATTGCCTATC 57.255 30.769 0.00 0.00 0.00 2.08
2301 2461 4.976224 ACGGTTTTTACATTGCCTATCC 57.024 40.909 0.00 0.00 0.00 2.59
2302 2462 4.595986 ACGGTTTTTACATTGCCTATCCT 58.404 39.130 0.00 0.00 0.00 3.24
2303 2463 5.747342 ACGGTTTTTACATTGCCTATCCTA 58.253 37.500 0.00 0.00 0.00 2.94
2304 2464 6.181908 ACGGTTTTTACATTGCCTATCCTAA 58.818 36.000 0.00 0.00 0.00 2.69
2305 2465 6.831868 ACGGTTTTTACATTGCCTATCCTAAT 59.168 34.615 0.00 0.00 0.00 1.73
2306 2466 7.340999 ACGGTTTTTACATTGCCTATCCTAATT 59.659 33.333 0.00 0.00 0.00 1.40
2307 2467 7.860872 CGGTTTTTACATTGCCTATCCTAATTC 59.139 37.037 0.00 0.00 0.00 2.17
2308 2468 8.914011 GGTTTTTACATTGCCTATCCTAATTCT 58.086 33.333 0.00 0.00 0.00 2.40
2342 2502 8.784043 TCTCTACAGAAACTGAAAAATTAAGGC 58.216 33.333 5.76 0.00 35.18 4.35
2343 2503 8.458573 TCTACAGAAACTGAAAAATTAAGGCA 57.541 30.769 5.76 0.00 35.18 4.75
2344 2504 8.349983 TCTACAGAAACTGAAAAATTAAGGCAC 58.650 33.333 5.76 0.00 35.18 5.01
2345 2505 7.112452 ACAGAAACTGAAAAATTAAGGCACT 57.888 32.000 5.76 0.00 35.95 4.40
2346 2506 8.232913 ACAGAAACTGAAAAATTAAGGCACTA 57.767 30.769 5.76 0.00 33.95 2.74
2347 2507 8.691797 ACAGAAACTGAAAAATTAAGGCACTAA 58.308 29.630 5.76 0.00 33.95 2.24
2348 2508 9.696917 CAGAAACTGAAAAATTAAGGCACTAAT 57.303 29.630 0.00 0.00 31.73 1.73
2358 2518 8.838649 AAATTAAGGCACTAATTTGATAGGGT 57.161 30.769 13.42 0.00 38.49 4.34
2359 2519 8.465273 AATTAAGGCACTAATTTGATAGGGTC 57.535 34.615 0.00 0.00 38.49 4.46
2360 2520 4.439253 AGGCACTAATTTGATAGGGTCC 57.561 45.455 0.00 0.00 36.02 4.46
2361 2521 3.138468 AGGCACTAATTTGATAGGGTCCC 59.862 47.826 0.00 0.00 36.02 4.46
2362 2522 3.138468 GGCACTAATTTGATAGGGTCCCT 59.862 47.826 16.73 16.73 37.71 4.20
2365 2525 5.631481 GCACTAATTTGATAGGGTCCCTCAA 60.631 44.000 15.84 11.28 34.61 3.02
2402 2562 9.136952 GTAACGGCGATATAGAGAATTATTGTT 57.863 33.333 16.62 0.00 0.00 2.83
2446 2606 4.223923 AGTGGTTCTAGAATGCTAGCACTT 59.776 41.667 22.07 15.23 40.00 3.16
2478 2638 8.814931 AGATTCTGATTGAGATATGTCTAAGGG 58.185 37.037 1.10 0.00 33.97 3.95
2488 2648 3.584733 ATGTCTAAGGGCCTTGGATTC 57.415 47.619 31.44 21.13 33.81 2.52
2489 2649 2.274542 TGTCTAAGGGCCTTGGATTCA 58.725 47.619 31.44 23.23 33.81 2.57
2490 2650 2.026262 TGTCTAAGGGCCTTGGATTCAC 60.026 50.000 31.44 20.64 33.81 3.18
2491 2651 2.239907 GTCTAAGGGCCTTGGATTCACT 59.760 50.000 31.44 4.67 33.81 3.41
2496 2657 1.753073 GGGCCTTGGATTCACTCATTG 59.247 52.381 0.84 0.00 0.00 2.82
2505 2666 3.317430 GGATTCACTCATTGGATTGCCTC 59.683 47.826 0.00 0.00 34.31 4.70
2506 2667 3.726557 TTCACTCATTGGATTGCCTCT 57.273 42.857 0.00 0.00 34.31 3.69
2508 2669 2.573009 TCACTCATTGGATTGCCTCTCA 59.427 45.455 0.00 0.00 34.31 3.27
2509 2670 2.943690 CACTCATTGGATTGCCTCTCAG 59.056 50.000 0.00 0.00 34.31 3.35
2510 2671 1.948145 CTCATTGGATTGCCTCTCAGC 59.052 52.381 0.00 0.00 34.31 4.26
2511 2672 1.282738 TCATTGGATTGCCTCTCAGCA 59.717 47.619 0.00 0.00 42.17 4.41
2512 2673 1.404391 CATTGGATTGCCTCTCAGCAC 59.596 52.381 0.00 0.00 43.97 4.40
2513 2674 0.401356 TTGGATTGCCTCTCAGCACA 59.599 50.000 0.00 0.00 43.97 4.57
2514 2675 0.321919 TGGATTGCCTCTCAGCACAC 60.322 55.000 0.00 0.00 43.97 3.82
2517 2678 0.959372 ATTGCCTCTCAGCACACTGC 60.959 55.000 0.00 0.00 43.97 4.40
2529 2690 2.127251 GCACACTGCAACTTTTAAGGC 58.873 47.619 0.00 0.00 44.26 4.35
2530 2691 2.481104 GCACACTGCAACTTTTAAGGCA 60.481 45.455 0.00 0.00 44.26 4.75
2531 2692 3.115554 CACACTGCAACTTTTAAGGCAC 58.884 45.455 0.00 0.00 32.06 5.01
2532 2693 6.749298 GCACACTGCAACTTTTAAGGCACT 62.749 45.833 0.00 0.00 44.26 4.40
2533 2694 4.036262 CACACTGCAACTTTTAAGGCACTA 59.964 41.667 0.00 0.00 38.49 2.74
2534 2695 4.036380 ACACTGCAACTTTTAAGGCACTAC 59.964 41.667 0.00 0.00 38.49 2.73
2627 2830 2.166741 TCGTGTGCTTGTCAAAAACG 57.833 45.000 0.00 0.00 32.70 3.60
2630 2833 3.026349 CGTGTGCTTGTCAAAAACGTAG 58.974 45.455 0.00 0.00 0.00 3.51
2633 2836 4.728608 GTGTGCTTGTCAAAAACGTAGAAG 59.271 41.667 0.00 0.00 0.00 2.85
2635 2838 4.728608 GTGCTTGTCAAAAACGTAGAAGTG 59.271 41.667 0.00 0.00 0.00 3.16
2636 2839 4.201871 TGCTTGTCAAAAACGTAGAAGTGG 60.202 41.667 0.00 0.00 0.00 4.00
2640 2843 5.120399 TGTCAAAAACGTAGAAGTGGTCAT 58.880 37.500 0.00 0.00 0.00 3.06
2641 2844 5.587043 TGTCAAAAACGTAGAAGTGGTCATT 59.413 36.000 0.00 0.00 0.00 2.57
2651 2854 6.208797 CGTAGAAGTGGTCATTATCTGGGATA 59.791 42.308 0.00 0.00 0.00 2.59
2655 2858 5.564550 AGTGGTCATTATCTGGGATATTGC 58.435 41.667 0.00 0.00 0.00 3.56
2663 2866 8.977412 TCATTATCTGGGATATTGCGATTAGTA 58.023 33.333 0.00 0.00 0.00 1.82
2664 2867 9.770097 CATTATCTGGGATATTGCGATTAGTAT 57.230 33.333 0.00 0.00 0.00 2.12
2666 2869 9.599866 TTATCTGGGATATTGCGATTAGTATTG 57.400 33.333 0.00 0.00 0.00 1.90
2667 2870 6.406370 TCTGGGATATTGCGATTAGTATTGG 58.594 40.000 0.00 0.00 0.00 3.16
2668 2871 6.013725 TCTGGGATATTGCGATTAGTATTGGT 60.014 38.462 0.00 0.00 0.00 3.67
2670 2873 7.857456 TGGGATATTGCGATTAGTATTGGTAT 58.143 34.615 0.00 0.00 0.00 2.73
2672 2875 9.998106 GGGATATTGCGATTAGTATTGGTATAT 57.002 33.333 0.00 0.00 0.00 0.86
2676 2879 6.860790 TGCGATTAGTATTGGTATATCCCA 57.139 37.500 0.00 0.00 34.77 4.37
2677 2880 6.873997 TGCGATTAGTATTGGTATATCCCAG 58.126 40.000 0.00 0.00 35.49 4.45
2678 2881 6.666113 TGCGATTAGTATTGGTATATCCCAGA 59.334 38.462 0.00 0.00 35.49 3.86
2681 2884 9.938280 CGATTAGTATTGGTATATCCCAGAAAA 57.062 33.333 0.00 0.00 35.49 2.29
2685 2888 8.409358 AGTATTGGTATATCCCAGAAAATTGC 57.591 34.615 0.00 0.00 35.49 3.56
2686 2889 8.004215 AGTATTGGTATATCCCAGAAAATTGCA 58.996 33.333 0.00 0.00 35.49 4.08
2687 2890 6.713762 TTGGTATATCCCAGAAAATTGCAG 57.286 37.500 0.00 0.00 35.49 4.41
2689 2892 6.430864 TGGTATATCCCAGAAAATTGCAGAA 58.569 36.000 0.00 0.00 34.77 3.02
2690 2893 7.068702 TGGTATATCCCAGAAAATTGCAGAAT 58.931 34.615 0.00 0.00 34.77 2.40
2762 3056 3.443329 TGCATTGGCTGGTAAATACTGTG 59.557 43.478 0.00 0.00 41.91 3.66
2779 3074 0.613260 GTGTGATGTAGGGAGTGCCA 59.387 55.000 2.50 0.00 35.15 4.92
2780 3075 0.613260 TGTGATGTAGGGAGTGCCAC 59.387 55.000 2.50 0.00 35.15 5.01
2785 3080 2.247699 TGTAGGGAGTGCCACTGTAT 57.752 50.000 0.00 0.00 35.15 2.29
2806 3101 4.397481 TCAGAGTAGCATGGAGTCATTG 57.603 45.455 0.00 0.00 0.00 2.82
2807 3102 3.771479 TCAGAGTAGCATGGAGTCATTGT 59.229 43.478 0.00 0.00 0.00 2.71
2808 3103 3.869832 CAGAGTAGCATGGAGTCATTGTG 59.130 47.826 0.00 0.00 0.00 3.33
2885 3370 8.116026 AGATTACTAGGGAAATGGATTGTGTTT 58.884 33.333 0.00 0.00 0.00 2.83
2886 3371 5.982890 ACTAGGGAAATGGATTGTGTTTG 57.017 39.130 0.00 0.00 0.00 2.93
2889 3374 6.725834 ACTAGGGAAATGGATTGTGTTTGAAT 59.274 34.615 0.00 0.00 0.00 2.57
2957 3449 7.051000 AGTTGGCTCTTCTAACATAAGGAATC 58.949 38.462 0.00 0.00 38.47 2.52
2975 3467 8.839310 AAGGAATCGGTATTGAGATTAGAATG 57.161 34.615 0.00 0.00 37.23 2.67
2980 3472 4.997395 CGGTATTGAGATTAGAATGTGGGG 59.003 45.833 0.00 0.00 0.00 4.96
2994 3486 1.985159 TGTGGGGAAGTGCTAGAACAT 59.015 47.619 3.00 0.00 0.00 2.71
2995 3487 3.178046 TGTGGGGAAGTGCTAGAACATA 58.822 45.455 3.00 0.00 0.00 2.29
2997 3489 4.227300 TGTGGGGAAGTGCTAGAACATATT 59.773 41.667 3.00 0.00 0.00 1.28
2998 3490 5.427157 TGTGGGGAAGTGCTAGAACATATTA 59.573 40.000 3.00 0.00 0.00 0.98
2999 3491 5.758784 GTGGGGAAGTGCTAGAACATATTAC 59.241 44.000 3.00 0.00 0.00 1.89
3001 3493 6.101150 TGGGGAAGTGCTAGAACATATTACAT 59.899 38.462 3.00 0.00 0.00 2.29
3002 3494 6.428159 GGGGAAGTGCTAGAACATATTACATG 59.572 42.308 3.00 0.00 0.00 3.21
3003 3495 6.073003 GGGAAGTGCTAGAACATATTACATGC 60.073 42.308 3.00 0.00 0.00 4.06
3035 3527 9.705290 GACCATGAAAATTAACAAGTTATTGGT 57.295 29.630 0.00 0.00 40.97 3.67
3047 3539 7.534723 ACAAGTTATTGGTCTGTAGAGTGTA 57.465 36.000 0.00 0.00 40.97 2.90
3048 3540 7.959175 ACAAGTTATTGGTCTGTAGAGTGTAA 58.041 34.615 0.00 0.00 40.97 2.41
3051 3543 8.828688 AGTTATTGGTCTGTAGAGTGTAAAAC 57.171 34.615 0.00 0.00 0.00 2.43
3054 3546 9.841295 TTATTGGTCTGTAGAGTGTAAAACTTT 57.159 29.630 0.00 0.00 40.07 2.66
3055 3547 7.781548 TTGGTCTGTAGAGTGTAAAACTTTC 57.218 36.000 0.00 0.00 40.07 2.62
3056 3548 6.285990 TGGTCTGTAGAGTGTAAAACTTTCC 58.714 40.000 0.00 0.00 40.07 3.13
3057 3549 6.099269 TGGTCTGTAGAGTGTAAAACTTTCCT 59.901 38.462 0.00 0.00 40.07 3.36
3060 3552 9.194271 GTCTGTAGAGTGTAAAACTTTCCTAAG 57.806 37.037 0.00 0.00 40.07 2.18
3095 3592 8.049117 TGTTCTGAATGATAACTAGGAAATGCT 58.951 33.333 0.00 0.00 0.00 3.79
3096 3593 9.547753 GTTCTGAATGATAACTAGGAAATGCTA 57.452 33.333 0.00 0.00 0.00 3.49
3116 3613 6.873997 TGCTATACACTAGCACTGTAAATGT 58.126 36.000 2.92 0.00 44.65 2.71
3119 3616 8.969267 GCTATACACTAGCACTGTAAATGTTAG 58.031 37.037 0.00 0.00 40.14 2.34
3128 3625 7.106239 AGCACTGTAAATGTTAGTCAGCTAAT 58.894 34.615 0.00 0.00 39.17 1.73
3129 3626 7.065085 AGCACTGTAAATGTTAGTCAGCTAATG 59.935 37.037 0.00 0.00 39.17 1.90
3131 3628 9.366216 CACTGTAAATGTTAGTCAGCTAATGTA 57.634 33.333 0.00 0.00 39.17 2.29
3134 3631 9.244799 TGTAAATGTTAGTCAGCTAATGTATCG 57.755 33.333 0.00 0.00 39.17 2.92
3141 3638 4.038522 AGTCAGCTAATGTATCGTGCAGAT 59.961 41.667 0.00 0.00 43.19 2.90
3142 3639 4.149571 GTCAGCTAATGTATCGTGCAGATG 59.850 45.833 8.40 0.00 40.40 2.90
3145 3642 5.407691 CAGCTAATGTATCGTGCAGATGATT 59.592 40.000 8.40 8.58 40.40 2.57
3148 3645 7.277319 AGCTAATGTATCGTGCAGATGATTATG 59.723 37.037 8.40 6.76 40.40 1.90
3149 3646 7.276438 GCTAATGTATCGTGCAGATGATTATGA 59.724 37.037 8.40 0.00 40.40 2.15
3150 3647 9.310716 CTAATGTATCGTGCAGATGATTATGAT 57.689 33.333 8.40 0.00 40.40 2.45
3152 3649 9.828039 AATGTATCGTGCAGATGATTATGATAT 57.172 29.630 8.40 0.00 40.40 1.63
3154 3651 8.469200 TGTATCGTGCAGATGATTATGATATCA 58.531 33.333 8.10 8.10 40.40 2.15
3155 3652 7.767745 ATCGTGCAGATGATTATGATATCAC 57.232 36.000 7.78 0.00 37.36 3.06
3156 3653 6.928520 TCGTGCAGATGATTATGATATCACT 58.071 36.000 7.78 0.39 37.36 3.41
3157 3654 6.810182 TCGTGCAGATGATTATGATATCACTG 59.190 38.462 7.78 9.88 37.36 3.66
3158 3655 6.810182 CGTGCAGATGATTATGATATCACTGA 59.190 38.462 17.03 4.68 37.36 3.41
3173 3670 3.603532 TCACTGAAGGACATGCTCATTC 58.396 45.455 12.65 12.65 39.68 2.67
3176 3673 4.008330 ACTGAAGGACATGCTCATTCTTG 58.992 43.478 17.37 13.83 39.89 3.02
3183 3680 3.678289 ACATGCTCATTCTTGCTACACA 58.322 40.909 0.00 0.00 0.00 3.72
3188 3685 7.067859 ACATGCTCATTCTTGCTACACAATATT 59.932 33.333 0.00 0.00 37.72 1.28
3249 3746 3.616219 TGTTTACTGTTCAGTGTTGCCT 58.384 40.909 14.69 0.00 0.00 4.75
3252 3749 2.128771 ACTGTTCAGTGTTGCCTGTT 57.871 45.000 4.58 0.00 34.02 3.16
3253 3750 3.275617 ACTGTTCAGTGTTGCCTGTTA 57.724 42.857 4.58 0.00 34.02 2.41
3255 3752 4.968259 ACTGTTCAGTGTTGCCTGTTATA 58.032 39.130 4.58 0.00 34.02 0.98
3269 3766 7.432148 TGCCTGTTATAGATCCTGAACTTAA 57.568 36.000 0.00 0.00 0.00 1.85
3270 3767 7.500992 TGCCTGTTATAGATCCTGAACTTAAG 58.499 38.462 0.00 0.00 0.00 1.85
3278 3775 6.031751 AGATCCTGAACTTAAGAGTGACAC 57.968 41.667 10.09 0.00 35.91 3.67
3280 3777 5.871396 TCCTGAACTTAAGAGTGACACTT 57.129 39.130 10.01 0.24 35.91 3.16
3288 3785 9.477484 GAACTTAAGAGTGACACTTTCAAGATA 57.523 33.333 14.43 0.00 35.39 1.98
3297 3794 9.950496 AGTGACACTTTCAAGATAAAGACATAT 57.050 29.630 1.07 0.00 38.50 1.78
3328 3825 6.482524 AGTAAATTAGGGAAAGAGGGACAAC 58.517 40.000 0.00 0.00 0.00 3.32
3337 3834 0.994247 AGAGGGACAACATGCATCCA 59.006 50.000 0.00 0.00 33.87 3.41
3342 3839 1.656818 GACAACATGCATCCACCCCG 61.657 60.000 0.00 0.00 0.00 5.73
3359 3856 1.451936 CGGAGTCCATTCCCCATCC 59.548 63.158 10.49 0.00 33.46 3.51
3377 3874 3.287867 TCCTGAAATGGATGGCTCTTC 57.712 47.619 0.00 0.00 0.00 2.87
3461 3959 9.421806 CAACAAATTTTCCTTATGCTAACATGA 57.578 29.630 0.00 0.00 37.04 3.07
3532 4030 4.407945 TCCAAAGCCTAAGGGTAGTATCAC 59.592 45.833 0.00 0.00 30.99 3.06
3547 4045 8.085296 GGGTAGTATCACTTGTGATGATAAGAG 58.915 40.741 22.16 0.00 40.00 2.85
3548 4046 8.634444 GGTAGTATCACTTGTGATGATAAGAGT 58.366 37.037 22.16 9.52 40.00 3.24
3554 4052 8.988064 TCACTTGTGATGATAAGAGTAAAGAC 57.012 34.615 0.00 0.00 0.00 3.01
3555 4053 8.585018 TCACTTGTGATGATAAGAGTAAAGACA 58.415 33.333 0.00 0.00 0.00 3.41
3557 4055 9.950496 ACTTGTGATGATAAGAGTAAAGACAAT 57.050 29.630 0.00 0.00 0.00 2.71
3559 4057 9.942850 TTGTGATGATAAGAGTAAAGACAATGA 57.057 29.630 0.00 0.00 0.00 2.57
3579 4077 1.851304 TTTTCCCTATGCAAGGCCAG 58.149 50.000 5.01 0.00 45.03 4.85
3581 4079 0.255890 TTCCCTATGCAAGGCCAGTC 59.744 55.000 5.01 0.00 45.03 3.51
3587 4085 2.031163 GCAAGGCCAGTCGTCTGT 59.969 61.111 5.01 0.00 39.82 3.41
3638 4136 4.121317 CAGGAAGCTCATCAGTCATTCTC 58.879 47.826 0.00 0.00 0.00 2.87
3640 4138 4.121317 GGAAGCTCATCAGTCATTCTCAG 58.879 47.826 0.00 0.00 0.00 3.35
3641 4139 3.182341 AGCTCATCAGTCATTCTCAGC 57.818 47.619 0.00 0.00 0.00 4.26
3647 4145 1.279846 TCAGTCATTCTCAGCATGCCA 59.720 47.619 15.66 0.00 34.76 4.92
3659 4157 2.751259 CAGCATGCCACTGTATCAAAGT 59.249 45.455 15.66 0.00 0.00 2.66
3662 4160 2.268762 TGCCACTGTATCAAAGTGCA 57.731 45.000 0.00 0.00 43.06 4.57
3668 4166 4.318332 CACTGTATCAAAGTGCAGAAGGA 58.682 43.478 0.00 0.00 38.72 3.36
3777 4275 2.806856 GCTCCTGAATGCAGCGTCG 61.807 63.158 0.00 0.00 40.91 5.12
3794 4292 2.574929 GGACACGGCGACATACCA 59.425 61.111 16.62 0.00 0.00 3.25
3876 4374 2.167281 CTGATCCCACTGTACCTGACTG 59.833 54.545 0.00 0.00 0.00 3.51
3878 4376 1.192146 TCCCACTGTACCTGACTGCC 61.192 60.000 0.00 0.00 0.00 4.85
3894 4392 0.827507 TGCCTTCCAGTTCAAAGGGC 60.828 55.000 3.53 0.00 41.99 5.19
4034 4532 0.625316 TCCACCATGTGATCCTTGGG 59.375 55.000 15.72 5.43 41.59 4.12
4059 4557 1.003573 AGGGACAGGGACCTGATCC 59.996 63.158 24.31 22.71 46.30 3.36
4067 4565 2.423898 GGACCTGATCCTTCGCCGA 61.424 63.158 0.00 0.00 45.22 5.54
4157 4655 0.108520 TCCGACGTAACAGGCCATTC 60.109 55.000 5.01 0.00 0.00 2.67
4240 4738 1.218316 GGCTCCTGAACCTACACCG 59.782 63.158 0.00 0.00 0.00 4.94
4373 4871 3.314331 CACGGTGGAGGCCTGACT 61.314 66.667 12.00 0.00 0.00 3.41
4391 4889 2.838202 GACTAACCAGATGTTCCTCCCA 59.162 50.000 0.00 0.00 38.42 4.37
4395 4893 1.617018 CCAGATGTTCCTCCCAGCGA 61.617 60.000 0.00 0.00 0.00 4.93
4396 4894 0.250234 CAGATGTTCCTCCCAGCGAA 59.750 55.000 0.00 0.00 0.00 4.70
4409 4907 3.357079 GCGAAGGCTGTGGTGGTG 61.357 66.667 0.00 0.00 35.83 4.17
4514 5012 0.968901 AGTACCATGTCGCCGGAGAA 60.969 55.000 10.32 0.60 0.00 2.87
4526 5024 1.612395 CCGGAGAAGAGAGCAGCCTT 61.612 60.000 0.00 0.00 0.00 4.35
4640 5138 0.180642 AGGACGTGAGGCTCGATCTA 59.819 55.000 10.42 0.00 40.87 1.98
4651 5149 2.223618 GGCTCGATCTAGACAGGTTCAC 60.224 54.545 0.00 0.00 0.00 3.18
4655 5153 0.456221 ATCTAGACAGGTTCACGCCG 59.544 55.000 0.00 0.00 0.00 6.46
4714 5214 9.567776 TTAAGTTCATGTGTCCTTTTCTTGATA 57.432 29.630 0.00 0.00 0.00 2.15
4787 5305 7.549488 AGTTTTGTATAGACTGGATTACTGTGC 59.451 37.037 0.00 0.00 0.00 4.57
4791 5309 2.260822 AGACTGGATTACTGTGCCTGT 58.739 47.619 7.89 7.89 36.70 4.00
4815 5347 6.095440 GTGCTCATGGTAATGGAAATGTTACT 59.905 38.462 0.00 0.00 34.30 2.24
4822 5354 8.343168 TGGTAATGGAAATGTTACTCGAAATT 57.657 30.769 0.00 0.00 0.00 1.82
4829 5361 7.328249 TGGAAATGTTACTCGAAATTGAATTGC 59.672 33.333 0.00 0.00 0.00 3.56
4835 5367 9.684448 TGTTACTCGAAATTGAATTGCATAAAA 57.316 25.926 0.00 0.00 0.00 1.52
4841 5373 9.254133 TCGAAATTGAATTGCATAAAACTTTGA 57.746 25.926 0.00 0.00 0.00 2.69
4842 5374 9.861138 CGAAATTGAATTGCATAAAACTTTGAA 57.139 25.926 0.00 0.00 0.00 2.69
4852 5384 6.699642 TGCATAAAACTTTGAAAGGTAGCAAC 59.300 34.615 10.02 0.00 0.00 4.17
4896 5433 4.386088 CCCATCTGTCTCAATTCCTCCAAT 60.386 45.833 0.00 0.00 0.00 3.16
4900 5437 5.248640 TCTGTCTCAATTCCTCCAATGAAC 58.751 41.667 0.00 0.00 0.00 3.18
4910 5447 5.779241 TCCTCCAATGAACCACTAGAAAT 57.221 39.130 0.00 0.00 0.00 2.17
4972 5509 3.883489 TGAGATCATCACCAGTACTACGG 59.117 47.826 0.00 0.00 31.12 4.02
4973 5510 2.623889 AGATCATCACCAGTACTACGGC 59.376 50.000 0.00 0.00 0.00 5.68
4975 5512 0.248907 CATCACCAGTACTACGGCGG 60.249 60.000 13.24 0.00 0.00 6.13
4977 5514 2.048023 CACCAGTACTACGGCGGGA 61.048 63.158 13.24 0.00 0.00 5.14
4978 5515 1.751927 ACCAGTACTACGGCGGGAG 60.752 63.158 13.24 10.89 0.00 4.30
4979 5516 1.751927 CCAGTACTACGGCGGGAGT 60.752 63.158 14.30 14.30 0.00 3.85
4980 5517 1.432251 CAGTACTACGGCGGGAGTG 59.568 63.158 18.89 7.74 0.00 3.51
4981 5518 1.751927 AGTACTACGGCGGGAGTGG 60.752 63.158 18.89 2.29 0.00 4.00
5183 6370 1.300931 GTCGTCCAGCTTGCACTCA 60.301 57.895 0.00 0.00 0.00 3.41
5184 6371 1.005748 TCGTCCAGCTTGCACTCAG 60.006 57.895 0.00 0.00 0.00 3.35
5310 6531 1.257936 CTGACACAAACGAGAACACCG 59.742 52.381 0.00 0.00 0.00 4.94
5336 6568 0.746063 CACCATGCATGCCGGTTAAT 59.254 50.000 22.67 3.24 0.00 1.40
5350 6588 2.552591 CGGTTAATGGTGGTGGTGGTAA 60.553 50.000 0.00 0.00 0.00 2.85
5355 6593 2.799126 TGGTGGTGGTGGTAATGATC 57.201 50.000 0.00 0.00 0.00 2.92
5358 6596 3.783082 TGGTGGTGGTGGTAATGATCATA 59.217 43.478 9.04 0.00 0.00 2.15
5359 6597 4.134563 GGTGGTGGTGGTAATGATCATAC 58.865 47.826 9.04 3.09 0.00 2.39
5365 6609 6.772716 GGTGGTGGTAATGATCATACAAGAAT 59.227 38.462 9.04 0.00 0.00 2.40
5371 6615 9.551734 TGGTAATGATCATACAAGAATGAAGAG 57.448 33.333 9.04 0.00 39.25 2.85
5387 6631 3.118482 TGAAGAGGAGAAGATGCATGGTC 60.118 47.826 2.46 0.21 0.00 4.02
5388 6632 2.761809 AGAGGAGAAGATGCATGGTCT 58.238 47.619 2.46 6.13 0.00 3.85
5418 6664 4.742201 CGGTCGCCACCAGGAGTG 62.742 72.222 0.16 0.00 44.02 3.51
5440 6689 2.456119 CGAGCAAGACGGCCATCAC 61.456 63.158 0.00 0.00 0.00 3.06
5461 6710 3.058160 GTGCTGCACCGCCATCTT 61.058 61.111 21.78 0.00 0.00 2.40
5462 6711 2.747460 TGCTGCACCGCCATCTTC 60.747 61.111 0.00 0.00 0.00 2.87
5463 6712 2.747460 GCTGCACCGCCATCTTCA 60.747 61.111 0.00 0.00 0.00 3.02
5502 6757 2.079925 GTTCACCACTCTGCTGGATTC 58.920 52.381 0.00 0.00 35.04 2.52
5508 6774 2.344950 CACTCTGCTGGATTCACTCAC 58.655 52.381 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 167 0.877071 AGCTCATGTTGGTGAAAGCG 59.123 50.000 0.00 0.00 36.92 4.68
469 471 5.239525 GTGAAATAATTAGCAGGAGCCGATT 59.760 40.000 0.00 0.00 43.56 3.34
669 697 9.740710 AGGCTACAGTTTTCTTTTACTTATCAT 57.259 29.630 0.00 0.00 0.00 2.45
674 702 9.486497 GTACTAGGCTACAGTTTTCTTTTACTT 57.514 33.333 0.00 0.00 0.00 2.24
675 703 8.868103 AGTACTAGGCTACAGTTTTCTTTTACT 58.132 33.333 0.00 0.00 0.00 2.24
676 704 8.923683 CAGTACTAGGCTACAGTTTTCTTTTAC 58.076 37.037 0.00 0.00 0.00 2.01
677 705 7.601508 GCAGTACTAGGCTACAGTTTTCTTTTA 59.398 37.037 0.00 0.00 0.00 1.52
758 815 2.282462 GAGGTGGGTGGCTGGTTG 60.282 66.667 0.00 0.00 0.00 3.77
1669 1743 8.936070 AAACACCCAAGTTAATCAAAACTAAC 57.064 30.769 0.00 0.00 38.76 2.34
1730 1810 5.608449 TGAGCATCTATTCACCTTGATCTG 58.392 41.667 0.00 0.00 34.92 2.90
1885 1976 2.958355 CCACCACCACTTGACTTTTCAT 59.042 45.455 0.00 0.00 0.00 2.57
1893 1984 1.053424 GGAGTACCACCACCACTTGA 58.947 55.000 2.35 0.00 35.97 3.02
2031 2163 0.947244 CAGCCCACAAGAGACACAAC 59.053 55.000 0.00 0.00 0.00 3.32
2316 2476 8.784043 GCCTTAATTTTTCAGTTTCTGTAGAGA 58.216 33.333 0.00 0.00 32.61 3.10
2317 2477 8.567948 TGCCTTAATTTTTCAGTTTCTGTAGAG 58.432 33.333 0.00 0.00 32.61 2.43
2318 2478 8.349983 GTGCCTTAATTTTTCAGTTTCTGTAGA 58.650 33.333 0.00 0.00 32.61 2.59
2319 2479 8.352942 AGTGCCTTAATTTTTCAGTTTCTGTAG 58.647 33.333 0.00 0.00 32.61 2.74
2320 2480 8.232913 AGTGCCTTAATTTTTCAGTTTCTGTA 57.767 30.769 0.00 0.00 32.61 2.74
2321 2481 7.112452 AGTGCCTTAATTTTTCAGTTTCTGT 57.888 32.000 0.00 0.00 32.61 3.41
2322 2482 9.696917 ATTAGTGCCTTAATTTTTCAGTTTCTG 57.303 29.630 0.00 0.00 0.00 3.02
2332 2492 9.267071 ACCCTATCAAATTAGTGCCTTAATTTT 57.733 29.630 10.77 3.77 39.81 1.82
2333 2493 8.838649 ACCCTATCAAATTAGTGCCTTAATTT 57.161 30.769 8.62 8.62 41.51 1.82
2334 2494 7.505923 GGACCCTATCAAATTAGTGCCTTAATT 59.494 37.037 0.00 0.00 35.35 1.40
2335 2495 7.004691 GGACCCTATCAAATTAGTGCCTTAAT 58.995 38.462 0.00 0.00 0.00 1.40
2336 2496 6.362248 GGACCCTATCAAATTAGTGCCTTAA 58.638 40.000 0.00 0.00 0.00 1.85
2337 2497 5.163131 GGGACCCTATCAAATTAGTGCCTTA 60.163 44.000 2.09 0.00 33.42 2.69
2338 2498 4.386424 GGGACCCTATCAAATTAGTGCCTT 60.386 45.833 2.09 0.00 33.42 4.35
2339 2499 3.138468 GGGACCCTATCAAATTAGTGCCT 59.862 47.826 2.09 0.00 33.42 4.75
2340 2500 3.138468 AGGGACCCTATCAAATTAGTGCC 59.862 47.826 12.85 0.00 36.11 5.01
2341 2501 4.141482 TGAGGGACCCTATCAAATTAGTGC 60.141 45.833 14.87 0.00 31.76 4.40
2342 2502 5.630415 TGAGGGACCCTATCAAATTAGTG 57.370 43.478 14.87 0.00 31.76 2.74
2343 2503 5.398012 GCTTGAGGGACCCTATCAAATTAGT 60.398 44.000 14.87 0.00 31.76 2.24
2344 2504 5.066593 GCTTGAGGGACCCTATCAAATTAG 58.933 45.833 14.87 4.04 31.76 1.73
2345 2505 4.476846 TGCTTGAGGGACCCTATCAAATTA 59.523 41.667 14.87 1.45 31.76 1.40
2346 2506 3.269381 TGCTTGAGGGACCCTATCAAATT 59.731 43.478 14.87 0.00 31.76 1.82
2347 2507 2.852449 TGCTTGAGGGACCCTATCAAAT 59.148 45.455 14.87 0.00 31.76 2.32
2348 2508 2.274542 TGCTTGAGGGACCCTATCAAA 58.725 47.619 14.87 5.17 31.76 2.69
2349 2509 1.965414 TGCTTGAGGGACCCTATCAA 58.035 50.000 14.87 13.84 31.76 2.57
2350 2510 2.173356 CAATGCTTGAGGGACCCTATCA 59.827 50.000 14.87 5.57 31.76 2.15
2351 2511 2.487986 CCAATGCTTGAGGGACCCTATC 60.488 54.545 14.87 2.34 31.76 2.08
2352 2512 1.496429 CCAATGCTTGAGGGACCCTAT 59.504 52.381 14.87 0.00 31.76 2.57
2353 2513 0.918983 CCAATGCTTGAGGGACCCTA 59.081 55.000 14.87 0.00 31.76 3.53
2354 2514 1.693640 CCAATGCTTGAGGGACCCT 59.306 57.895 14.79 14.79 36.03 4.34
2355 2515 2.054453 GCCAATGCTTGAGGGACCC 61.054 63.158 0.59 0.59 33.53 4.46
2356 2516 3.608432 GCCAATGCTTGAGGGACC 58.392 61.111 0.00 0.00 33.53 4.46
2376 2536 8.684973 ACAATAATTCTCTATATCGCCGTTAC 57.315 34.615 0.00 0.00 0.00 2.50
2379 2539 7.375834 TCAACAATAATTCTCTATATCGCCGT 58.624 34.615 0.00 0.00 0.00 5.68
2380 2540 7.542477 ACTCAACAATAATTCTCTATATCGCCG 59.458 37.037 0.00 0.00 0.00 6.46
2381 2541 8.764524 ACTCAACAATAATTCTCTATATCGCC 57.235 34.615 0.00 0.00 0.00 5.54
2382 2542 9.411801 TGACTCAACAATAATTCTCTATATCGC 57.588 33.333 0.00 0.00 0.00 4.58
2468 2628 2.852449 TGAATCCAAGGCCCTTAGACAT 59.148 45.455 0.00 0.00 0.00 3.06
2471 2631 2.505819 GAGTGAATCCAAGGCCCTTAGA 59.494 50.000 0.00 0.00 0.00 2.10
2472 2632 2.239654 TGAGTGAATCCAAGGCCCTTAG 59.760 50.000 0.00 0.00 0.00 2.18
2478 2638 2.726821 TCCAATGAGTGAATCCAAGGC 58.273 47.619 0.00 0.00 0.00 4.35
2488 2648 2.943690 CTGAGAGGCAATCCAATGAGTG 59.056 50.000 0.00 0.00 39.53 3.51
2489 2649 2.683152 GCTGAGAGGCAATCCAATGAGT 60.683 50.000 0.00 0.00 33.74 3.41
2490 2650 1.948145 GCTGAGAGGCAATCCAATGAG 59.052 52.381 0.00 0.00 33.74 2.90
2491 2651 1.282738 TGCTGAGAGGCAATCCAATGA 59.717 47.619 0.00 0.00 39.43 2.57
2496 2657 0.035630 AGTGTGCTGAGAGGCAATCC 60.036 55.000 0.00 0.00 44.18 3.01
2505 2666 2.857592 AAAAGTTGCAGTGTGCTGAG 57.142 45.000 0.00 0.00 45.31 3.35
2506 2667 3.066621 CCTTAAAAGTTGCAGTGTGCTGA 59.933 43.478 0.00 0.00 45.31 4.26
2508 2669 2.223805 GCCTTAAAAGTTGCAGTGTGCT 60.224 45.455 0.00 0.00 45.31 4.40
2509 2670 2.127251 GCCTTAAAAGTTGCAGTGTGC 58.873 47.619 0.00 0.00 45.29 4.57
2510 2671 3.115554 GTGCCTTAAAAGTTGCAGTGTG 58.884 45.455 0.00 0.00 33.80 3.82
2511 2672 3.023832 AGTGCCTTAAAAGTTGCAGTGT 58.976 40.909 0.00 0.00 36.12 3.55
2512 2673 3.715628 AGTGCCTTAAAAGTTGCAGTG 57.284 42.857 0.00 0.00 36.12 3.66
2513 2674 4.461198 AGTAGTGCCTTAAAAGTTGCAGT 58.539 39.130 6.55 6.55 40.31 4.40
2514 2675 5.438761 AAGTAGTGCCTTAAAAGTTGCAG 57.561 39.130 0.00 0.00 33.80 4.41
2517 2678 8.149973 TCTGTTAAGTAGTGCCTTAAAAGTTG 57.850 34.615 9.52 0.00 40.69 3.16
2518 2679 8.741603 TTCTGTTAAGTAGTGCCTTAAAAGTT 57.258 30.769 9.52 0.00 40.69 2.66
2519 2680 8.618677 GTTTCTGTTAAGTAGTGCCTTAAAAGT 58.381 33.333 9.52 0.00 40.69 2.66
2521 2682 8.508883 TGTTTCTGTTAAGTAGTGCCTTAAAA 57.491 30.769 0.00 0.00 38.33 1.52
2523 2684 7.502696 TCTGTTTCTGTTAAGTAGTGCCTTAA 58.497 34.615 0.00 0.00 35.18 1.85
2524 2685 7.058023 TCTGTTTCTGTTAAGTAGTGCCTTA 57.942 36.000 0.00 0.00 0.00 2.69
2525 2686 5.925509 TCTGTTTCTGTTAAGTAGTGCCTT 58.074 37.500 0.00 0.00 0.00 4.35
2526 2687 5.546621 TCTGTTTCTGTTAAGTAGTGCCT 57.453 39.130 0.00 0.00 0.00 4.75
2527 2688 6.803154 ATTCTGTTTCTGTTAAGTAGTGCC 57.197 37.500 0.00 0.00 0.00 5.01
2528 2689 8.989980 AGTTATTCTGTTTCTGTTAAGTAGTGC 58.010 33.333 0.00 0.00 0.00 4.40
2574 2736 4.168101 AGAACCAGACTCATAACCCAGAA 58.832 43.478 0.00 0.00 0.00 3.02
2607 2810 2.095668 ACGTTTTTGACAAGCACACGAA 60.096 40.909 13.93 0.00 32.08 3.85
2609 2812 1.889891 ACGTTTTTGACAAGCACACG 58.110 45.000 8.23 8.23 33.24 4.49
2627 2830 5.871396 TCCCAGATAATGACCACTTCTAC 57.129 43.478 0.00 0.00 0.00 2.59
2630 2833 6.150140 GCAATATCCCAGATAATGACCACTTC 59.850 42.308 4.26 0.00 0.00 3.01
2633 2836 4.393062 CGCAATATCCCAGATAATGACCAC 59.607 45.833 4.26 0.00 0.00 4.16
2635 2838 4.832248 TCGCAATATCCCAGATAATGACC 58.168 43.478 4.26 0.00 0.00 4.02
2636 2839 6.992063 AATCGCAATATCCCAGATAATGAC 57.008 37.500 4.26 0.00 0.00 3.06
2640 2843 9.599866 CAATACTAATCGCAATATCCCAGATAA 57.400 33.333 0.00 0.00 0.00 1.75
2641 2844 8.204160 CCAATACTAATCGCAATATCCCAGATA 58.796 37.037 0.00 0.00 0.00 1.98
2651 2854 7.857456 TGGGATATACCAATACTAATCGCAAT 58.143 34.615 3.37 0.00 41.20 3.56
2655 2858 9.938280 TTTTCTGGGATATACCAATACTAATCG 57.062 33.333 8.38 0.00 40.68 3.34
2663 2866 7.068702 TCTGCAATTTTCTGGGATATACCAAT 58.931 34.615 8.38 0.00 40.68 3.16
2664 2867 6.430864 TCTGCAATTTTCTGGGATATACCAA 58.569 36.000 8.38 0.00 40.68 3.67
2665 2868 6.012337 TCTGCAATTTTCTGGGATATACCA 57.988 37.500 6.47 6.47 41.20 3.25
2666 2869 6.959639 TTCTGCAATTTTCTGGGATATACC 57.040 37.500 0.00 0.00 38.08 2.73
2668 2871 9.866655 ACTAATTCTGCAATTTTCTGGGATATA 57.133 29.630 0.00 0.00 33.95 0.86
2670 2873 9.866655 ATACTAATTCTGCAATTTTCTGGGATA 57.133 29.630 0.00 0.00 33.95 2.59
2672 2875 8.593945 AATACTAATTCTGCAATTTTCTGGGA 57.406 30.769 0.00 0.00 33.95 4.37
2726 3020 4.039819 GCCAATGCACGCAAATAATGCTA 61.040 43.478 0.00 0.00 44.88 3.49
2728 3022 1.004715 GCCAATGCACGCAAATAATGC 60.005 47.619 0.00 0.00 44.15 3.56
2735 3029 1.175347 TTACCAGCCAATGCACGCAA 61.175 50.000 0.00 0.00 41.13 4.85
2762 3056 0.905357 AGTGGCACTCCCTACATCAC 59.095 55.000 15.88 0.00 0.00 3.06
2779 3074 4.541705 ACTCCATGCTACTCTGATACAGT 58.458 43.478 0.00 0.00 32.61 3.55
2780 3075 4.582240 TGACTCCATGCTACTCTGATACAG 59.418 45.833 0.00 0.00 0.00 2.74
2785 3080 3.771479 ACAATGACTCCATGCTACTCTGA 59.229 43.478 0.00 0.00 32.36 3.27
2861 3157 7.893302 TCAAACACAATCCATTTCCCTAGTAAT 59.107 33.333 0.00 0.00 0.00 1.89
2872 3168 9.790344 TCCATTTTAATTCAAACACAATCCATT 57.210 25.926 0.00 0.00 0.00 3.16
2873 3169 9.790344 TTCCATTTTAATTCAAACACAATCCAT 57.210 25.926 0.00 0.00 0.00 3.41
2876 3172 9.545611 GCATTCCATTTTAATTCAAACACAATC 57.454 29.630 0.00 0.00 0.00 2.67
2877 3173 9.064706 TGCATTCCATTTTAATTCAAACACAAT 57.935 25.926 0.00 0.00 0.00 2.71
2878 3174 8.442632 TGCATTCCATTTTAATTCAAACACAA 57.557 26.923 0.00 0.00 0.00 3.33
2879 3175 8.618702 ATGCATTCCATTTTAATTCAAACACA 57.381 26.923 0.00 0.00 0.00 3.72
2889 3374 8.838365 GGCAAATGATTATGCATTCCATTTTAA 58.162 29.630 20.97 4.41 44.32 1.52
2912 3397 7.098477 CCAACTATTTTCATTTCTCATTGGCA 58.902 34.615 0.00 0.00 0.00 4.92
2929 3414 8.090788 TCCTTATGTTAGAAGAGCCAACTATT 57.909 34.615 0.00 0.00 0.00 1.73
2957 3449 4.997395 CCCCACATTCTAATCTCAATACCG 59.003 45.833 0.00 0.00 0.00 4.02
2975 3467 2.789409 ATGTTCTAGCACTTCCCCAC 57.211 50.000 0.00 0.00 0.00 4.61
2980 3472 7.482654 TGCATGTAATATGTTCTAGCACTTC 57.517 36.000 0.00 0.00 0.00 3.01
3021 3513 7.959175 ACACTCTACAGACCAATAACTTGTTA 58.041 34.615 0.00 0.00 0.00 2.41
3022 3514 6.827727 ACACTCTACAGACCAATAACTTGTT 58.172 36.000 0.00 0.00 0.00 2.83
3027 3519 8.828688 AGTTTTACACTCTACAGACCAATAAC 57.171 34.615 0.00 0.00 0.00 1.89
3035 3527 9.139734 TCTTAGGAAAGTTTTACACTCTACAGA 57.860 33.333 0.00 0.00 32.94 3.41
3048 3540 9.574516 AGAACACATACATTCTTAGGAAAGTTT 57.425 29.630 0.59 0.00 35.43 2.66
3051 3543 8.777865 TCAGAACACATACATTCTTAGGAAAG 57.222 34.615 0.00 0.00 32.77 2.62
3054 3546 8.539544 TCATTCAGAACACATACATTCTTAGGA 58.460 33.333 0.00 0.00 32.77 2.94
3055 3547 8.722480 TCATTCAGAACACATACATTCTTAGG 57.278 34.615 0.00 0.00 32.77 2.69
3070 3567 8.443953 AGCATTTCCTAGTTATCATTCAGAAC 57.556 34.615 0.00 0.00 0.00 3.01
3096 3593 8.528643 TGACTAACATTTACAGTGCTAGTGTAT 58.471 33.333 0.00 0.00 34.32 2.29
3099 3596 6.183360 GCTGACTAACATTTACAGTGCTAGTG 60.183 42.308 0.00 0.00 30.84 2.74
3100 3597 5.869888 GCTGACTAACATTTACAGTGCTAGT 59.130 40.000 0.00 0.00 32.74 2.57
3112 3609 6.201044 GCACGATACATTAGCTGACTAACATT 59.799 38.462 0.00 0.00 41.12 2.71
3113 3610 5.692204 GCACGATACATTAGCTGACTAACAT 59.308 40.000 0.00 0.00 41.12 2.71
3116 3613 5.067283 TCTGCACGATACATTAGCTGACTAA 59.933 40.000 0.00 0.00 42.47 2.24
3119 3616 3.706698 TCTGCACGATACATTAGCTGAC 58.293 45.455 0.00 0.00 0.00 3.51
3120 3617 4.037923 TCATCTGCACGATACATTAGCTGA 59.962 41.667 0.00 0.00 37.52 4.26
3128 3625 8.469200 TGATATCATAATCATCTGCACGATACA 58.531 33.333 0.00 0.00 30.92 2.29
3129 3626 8.750416 GTGATATCATAATCATCTGCACGATAC 58.250 37.037 9.02 0.00 38.13 2.24
3131 3628 7.491696 CAGTGATATCATAATCATCTGCACGAT 59.508 37.037 9.02 0.00 38.13 3.73
3134 3631 8.543862 TTCAGTGATATCATAATCATCTGCAC 57.456 34.615 9.02 0.00 38.13 4.57
3141 3638 7.605309 GCATGTCCTTCAGTGATATCATAATCA 59.395 37.037 9.02 2.06 33.48 2.57
3142 3639 7.823310 AGCATGTCCTTCAGTGATATCATAATC 59.177 37.037 9.02 0.00 0.00 1.75
3145 3642 6.268387 TGAGCATGTCCTTCAGTGATATCATA 59.732 38.462 9.02 0.00 0.00 2.15
3148 3645 4.953667 TGAGCATGTCCTTCAGTGATATC 58.046 43.478 0.00 0.00 0.00 1.63
3149 3646 5.563876 ATGAGCATGTCCTTCAGTGATAT 57.436 39.130 0.00 0.00 0.00 1.63
3150 3647 5.129980 AGAATGAGCATGTCCTTCAGTGATA 59.870 40.000 0.00 0.00 33.42 2.15
3151 3648 3.928005 ATGAGCATGTCCTTCAGTGAT 57.072 42.857 0.00 0.00 0.00 3.06
3152 3649 3.262660 AGAATGAGCATGTCCTTCAGTGA 59.737 43.478 12.28 0.00 33.42 3.41
3154 3651 3.996921 AGAATGAGCATGTCCTTCAGT 57.003 42.857 12.28 4.59 33.42 3.41
3155 3652 3.181499 GCAAGAATGAGCATGTCCTTCAG 60.181 47.826 12.28 7.83 33.42 3.02
3156 3653 2.751259 GCAAGAATGAGCATGTCCTTCA 59.249 45.455 12.28 5.46 33.42 3.02
3157 3654 3.015327 AGCAAGAATGAGCATGTCCTTC 58.985 45.455 0.00 0.57 31.64 3.46
3158 3655 3.083122 AGCAAGAATGAGCATGTCCTT 57.917 42.857 0.00 0.00 0.00 3.36
3176 3673 9.072294 AGCGAACAAAAATAAATATTGTGTAGC 57.928 29.630 14.49 14.49 37.36 3.58
3188 3685 7.115663 GCAAAGATAACCAGCGAACAAAAATAA 59.884 33.333 0.00 0.00 0.00 1.40
3200 3697 6.030228 GTCAACATTAGCAAAGATAACCAGC 58.970 40.000 0.00 0.00 0.00 4.85
3249 3746 9.475620 TCACTCTTAAGTTCAGGATCTATAACA 57.524 33.333 1.63 0.00 31.71 2.41
3252 3749 8.904834 GTGTCACTCTTAAGTTCAGGATCTATA 58.095 37.037 1.63 0.00 31.71 1.31
3253 3750 7.617723 AGTGTCACTCTTAAGTTCAGGATCTAT 59.382 37.037 0.00 0.00 31.71 1.98
3255 3752 5.777732 AGTGTCACTCTTAAGTTCAGGATCT 59.222 40.000 0.00 0.00 31.71 2.75
3269 3766 7.500992 TGTCTTTATCTTGAAAGTGTCACTCT 58.499 34.615 5.82 0.00 37.62 3.24
3270 3767 7.715265 TGTCTTTATCTTGAAAGTGTCACTC 57.285 36.000 5.82 0.00 37.62 3.51
3297 3794 7.888546 CCCTCTTTCCCTAATTTACTTTCTGAA 59.111 37.037 0.00 0.00 0.00 3.02
3305 3802 6.243148 TGTTGTCCCTCTTTCCCTAATTTAC 58.757 40.000 0.00 0.00 0.00 2.01
3337 3834 2.691252 GGGAATGGACTCCGGGGT 60.691 66.667 6.72 6.72 36.21 4.95
3342 3839 0.475906 CAGGATGGGGAATGGACTCC 59.524 60.000 0.00 0.00 34.41 3.85
3359 3856 3.008835 TGGAAGAGCCATCCATTTCAG 57.991 47.619 0.00 0.00 43.33 3.02
3377 3874 2.082231 CTGACTGTGGAGATTTGCTGG 58.918 52.381 0.00 0.00 0.00 4.85
3461 3959 7.309438 GCTGGAAAAGAAAATCAGTACCATCTT 60.309 37.037 0.00 0.00 0.00 2.40
3547 4045 7.771183 TGCATAGGGAAAATCATTGTCTTTAC 58.229 34.615 0.00 0.00 0.00 2.01
3548 4046 7.953005 TGCATAGGGAAAATCATTGTCTTTA 57.047 32.000 0.00 0.00 0.00 1.85
3554 4052 4.374399 GCCTTGCATAGGGAAAATCATTG 58.626 43.478 14.32 0.00 44.91 2.82
3555 4053 3.389002 GGCCTTGCATAGGGAAAATCATT 59.611 43.478 14.32 0.00 44.91 2.57
3557 4055 2.292126 TGGCCTTGCATAGGGAAAATCA 60.292 45.455 3.32 0.01 44.91 2.57
3559 4057 2.292455 ACTGGCCTTGCATAGGGAAAAT 60.292 45.455 3.32 0.00 44.91 1.82
3560 4058 1.077005 ACTGGCCTTGCATAGGGAAAA 59.923 47.619 3.32 0.00 44.91 2.29
3563 4061 1.915228 GACTGGCCTTGCATAGGGA 59.085 57.895 3.32 0.00 44.91 4.20
3579 4077 1.471684 ACCGGACATCTTACAGACGAC 59.528 52.381 9.46 0.00 0.00 4.34
3581 4079 1.471287 TCACCGGACATCTTACAGACG 59.529 52.381 9.46 0.00 0.00 4.18
3587 4085 3.159353 CGAACATCACCGGACATCTTA 57.841 47.619 9.46 0.00 0.00 2.10
3599 4097 1.407299 CCTGGAGCAATCCGAACATCA 60.407 52.381 0.00 0.00 0.00 3.07
3602 4100 0.690192 TTCCTGGAGCAATCCGAACA 59.310 50.000 0.00 0.00 0.00 3.18
3638 4136 2.751259 ACTTTGATACAGTGGCATGCTG 59.249 45.455 18.92 10.87 39.67 4.41
3640 4138 2.733227 GCACTTTGATACAGTGGCATGC 60.733 50.000 9.90 9.90 41.81 4.06
3641 4139 2.488937 TGCACTTTGATACAGTGGCATG 59.511 45.455 0.00 0.00 41.81 4.06
3647 4145 4.319177 GTCCTTCTGCACTTTGATACAGT 58.681 43.478 0.00 0.00 0.00 3.55
3659 4157 2.132517 TAACGCGTCGTCCTTCTGCA 62.133 55.000 14.44 0.00 39.99 4.41
3662 4160 1.505353 CCTAACGCGTCGTCCTTCT 59.495 57.895 14.44 0.00 39.99 2.85
3668 4166 0.596600 CATATGGCCTAACGCGTCGT 60.597 55.000 14.44 3.10 43.97 4.34
3777 4275 1.518572 CTGGTATGTCGCCGTGTCC 60.519 63.158 0.00 0.00 0.00 4.02
3794 4292 1.867919 CGACCGAGAAGACCACTGCT 61.868 60.000 0.00 0.00 34.14 4.24
3825 4323 4.058817 GACATGTCGTGGAAGAAGTTTCT 58.941 43.478 10.69 0.00 39.74 2.52
3876 4374 1.866853 CGCCCTTTGAACTGGAAGGC 61.867 60.000 0.00 0.00 40.87 4.35
3878 4376 1.244019 CCCGCCCTTTGAACTGGAAG 61.244 60.000 0.00 0.00 42.29 3.46
3894 4392 1.300620 TGACGAAGAACTGCACCCG 60.301 57.895 0.00 0.00 0.00 5.28
4034 4532 2.607750 TCCCTGTCCCTCACCAGC 60.608 66.667 0.00 0.00 0.00 4.85
4059 4557 1.134367 TCTTGTAGGATGTCGGCGAAG 59.866 52.381 12.92 1.48 0.00 3.79
4061 4559 1.179152 TTCTTGTAGGATGTCGGCGA 58.821 50.000 4.99 4.99 0.00 5.54
4067 4565 3.245264 CCTTGGGGTTTCTTGTAGGATGT 60.245 47.826 0.00 0.00 0.00 3.06
4092 4590 5.277250 TCTTGTGAATCCTACCATGGAGTA 58.723 41.667 21.47 0.00 39.78 2.59
4146 4644 0.609131 CCAAGGACGAATGGCCTGTT 60.609 55.000 3.32 0.00 34.00 3.16
4157 4655 2.951458 GGGTTTTCGCCAAGGACG 59.049 61.111 0.00 0.00 0.00 4.79
4259 4757 1.944676 CACGTCGAATCCTAGCGCC 60.945 63.158 2.29 0.00 0.00 6.53
4305 4803 1.704070 GTCTCTGCGAACCTCTTGAC 58.296 55.000 0.00 0.00 0.00 3.18
4363 4861 1.834263 ACATCTGGTTAGTCAGGCCTC 59.166 52.381 0.00 0.00 35.58 4.70
4373 4871 1.559682 GCTGGGAGGAACATCTGGTTA 59.440 52.381 0.00 0.00 40.63 2.85
4395 4893 2.072874 ATCTGCACCACCACAGCCTT 62.073 55.000 0.00 0.00 33.80 4.35
4396 4894 2.475371 GATCTGCACCACCACAGCCT 62.475 60.000 0.00 0.00 33.80 4.58
4400 4898 1.301637 CACGATCTGCACCACCACA 60.302 57.895 0.00 0.00 0.00 4.17
4409 4907 2.903855 CCCCATGGCACGATCTGC 60.904 66.667 6.09 8.20 46.31 4.26
4421 4919 3.492353 CACTCCATCCCGCCCCAT 61.492 66.667 0.00 0.00 0.00 4.00
4502 5000 2.701780 GCTCTCTTCTCCGGCGACA 61.702 63.158 9.30 0.00 0.00 4.35
4544 5042 1.003355 CCTGAACACGGCATGGTCT 60.003 57.895 0.00 0.00 46.23 3.85
4640 5138 2.338984 GTCGGCGTGAACCTGTCT 59.661 61.111 6.85 0.00 0.00 3.41
4651 5149 2.202440 CACGTAGGAGTGTCGGCG 60.202 66.667 0.00 0.00 37.35 6.46
4655 5153 1.215647 CAGGGCACGTAGGAGTGTC 59.784 63.158 0.00 0.00 45.27 3.67
4714 5214 9.092876 CGCTCTATTTATCTCAGAAGAAAAAGT 57.907 33.333 0.00 0.00 34.49 2.66
4729 5229 3.482722 GCATGCATGCGCTCTATTTAT 57.517 42.857 33.99 0.00 44.67 1.40
4787 5305 2.715749 TCCATTACCATGAGCACAGG 57.284 50.000 0.00 0.00 31.07 4.00
4791 5309 6.186957 AGTAACATTTCCATTACCATGAGCA 58.813 36.000 0.00 0.00 32.67 4.26
4815 5347 9.254133 TCAAAGTTTTATGCAATTCAATTTCGA 57.746 25.926 0.00 0.00 0.00 3.71
4822 5354 9.474920 CTACCTTTCAAAGTTTTATGCAATTCA 57.525 29.630 0.00 0.00 0.00 2.57
4829 5361 8.641499 TTGTTGCTACCTTTCAAAGTTTTATG 57.359 30.769 0.00 0.00 0.00 1.90
4835 5367 6.655078 ATCATTGTTGCTACCTTTCAAAGT 57.345 33.333 0.00 0.00 0.00 2.66
4841 5373 6.150140 GTGAGAGAATCATTGTTGCTACCTTT 59.850 38.462 0.00 0.00 40.92 3.11
4842 5374 5.645497 GTGAGAGAATCATTGTTGCTACCTT 59.355 40.000 0.00 0.00 40.92 3.50
4852 5384 3.243101 GGCATGCAGTGAGAGAATCATTG 60.243 47.826 21.36 0.00 45.81 2.82
4896 5433 6.627087 ATTCTCTGGATTTCTAGTGGTTCA 57.373 37.500 0.00 0.00 0.00 3.18
4961 5498 1.751927 ACTCCCGCCGTAGTACTGG 60.752 63.158 5.39 0.00 0.00 4.00
4983 5520 4.677151 ACCACTCCCACCCCTCCC 62.677 72.222 0.00 0.00 0.00 4.30
4984 5521 3.330720 CACCACTCCCACCCCTCC 61.331 72.222 0.00 0.00 0.00 4.30
4985 5522 3.330720 CCACCACTCCCACCCCTC 61.331 72.222 0.00 0.00 0.00 4.30
5183 6370 5.179452 ACATAAAGTTCTGCATACACCCT 57.821 39.130 0.00 0.00 0.00 4.34
5184 6371 5.878116 TGTACATAAAGTTCTGCATACACCC 59.122 40.000 0.00 0.00 0.00 4.61
5310 6531 2.400798 CATGCATGGTGACGACGC 59.599 61.111 19.40 0.00 0.00 5.19
5336 6568 1.988846 TGATCATTACCACCACCACCA 59.011 47.619 0.00 0.00 0.00 4.17
5350 6588 8.260099 TCTCCTCTTCATTCTTGTATGATCAT 57.740 34.615 13.81 13.81 34.67 2.45
5355 6593 7.041916 GCATCTTCTCCTCTTCATTCTTGTATG 60.042 40.741 0.00 0.00 0.00 2.39
5358 6596 5.184711 GCATCTTCTCCTCTTCATTCTTGT 58.815 41.667 0.00 0.00 0.00 3.16
5359 6597 5.183969 TGCATCTTCTCCTCTTCATTCTTG 58.816 41.667 0.00 0.00 0.00 3.02
5365 6609 2.842496 ACCATGCATCTTCTCCTCTTCA 59.158 45.455 0.00 0.00 0.00 3.02
5371 6615 4.414337 AAGTAGACCATGCATCTTCTCC 57.586 45.455 9.43 0.13 0.00 3.71
5387 6631 0.570734 CGACCGCGCAATGTAAGTAG 59.429 55.000 8.75 0.00 0.00 2.57
5388 6632 2.656137 CGACCGCGCAATGTAAGTA 58.344 52.632 8.75 0.00 0.00 2.24
5451 6700 2.437281 AGATGAAGATGAAGATGGCGGT 59.563 45.455 0.00 0.00 0.00 5.68
5455 6704 5.531659 CCTTCCAAGATGAAGATGAAGATGG 59.468 44.000 2.48 0.00 43.60 3.51
5457 6706 6.324601 ACCTTCCAAGATGAAGATGAAGAT 57.675 37.500 2.48 0.00 43.60 2.40
5458 6707 5.768980 ACCTTCCAAGATGAAGATGAAGA 57.231 39.130 2.48 0.00 43.60 2.87
5459 6708 5.709164 ACAACCTTCCAAGATGAAGATGAAG 59.291 40.000 2.48 0.00 43.60 3.02
5460 6709 5.634118 ACAACCTTCCAAGATGAAGATGAA 58.366 37.500 2.48 0.00 43.60 2.57
5461 6710 5.246981 ACAACCTTCCAAGATGAAGATGA 57.753 39.130 2.48 0.00 43.60 2.92
5462 6711 5.474532 TGAACAACCTTCCAAGATGAAGATG 59.525 40.000 2.48 4.30 43.60 2.90
5463 6712 5.474876 GTGAACAACCTTCCAAGATGAAGAT 59.525 40.000 2.48 0.00 43.60 2.40
5489 6744 1.277557 GGTGAGTGAATCCAGCAGAGT 59.722 52.381 0.00 0.00 0.00 3.24
5570 6836 2.885644 CTCCGCGACACCCGAATG 60.886 66.667 8.23 0.00 41.76 2.67
5639 6905 3.555956 CGTATGGAGTGCTGTAATTCCAC 59.444 47.826 3.07 0.00 42.12 4.02
5640 6906 3.196901 ACGTATGGAGTGCTGTAATTCCA 59.803 43.478 0.00 3.42 43.36 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.