Multiple sequence alignment - TraesCS3B01G023800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G023800 chr3B 100.000 3221 0 0 1 3221 10220293 10223513 0.000000e+00 5949.0
1 TraesCS3B01G023800 chr3D 92.117 1332 82 9 736 2051 8327672 8328996 0.000000e+00 1857.0
2 TraesCS3B01G023800 chr3D 94.515 711 32 2 25 734 1940741 1941445 0.000000e+00 1090.0
3 TraesCS3B01G023800 chr3A 89.612 1290 81 29 877 2161 12495383 12494142 0.000000e+00 1591.0
4 TraesCS3B01G023800 chr4D 94.655 711 30 5 25 734 320277988 320277285 0.000000e+00 1096.0
5 TraesCS3B01G023800 chr4D 92.417 633 41 3 2496 3128 132197030 132197655 0.000000e+00 896.0
6 TraesCS3B01G023800 chr4D 96.923 65 2 0 3118 3182 132197667 132197731 3.400000e-20 110.0
7 TraesCS3B01G023800 chr7D 94.759 706 30 2 30 734 624775297 624775996 0.000000e+00 1092.0
8 TraesCS3B01G023800 chr7D 94.618 706 31 2 30 734 579134232 579134931 0.000000e+00 1086.0
9 TraesCS3B01G023800 chr7D 94.476 706 32 2 30 734 497341881 497341182 0.000000e+00 1081.0
10 TraesCS3B01G023800 chr7D 94.334 706 30 6 30 734 614484909 614485605 0.000000e+00 1074.0
11 TraesCS3B01G023800 chr7D 93.484 706 36 5 30 734 534629459 534630155 0.000000e+00 1040.0
12 TraesCS3B01G023800 chr7D 89.706 68 4 2 3114 3181 25204879 25204815 2.060000e-12 84.2
13 TraesCS3B01G023800 chr7D 100.000 32 0 0 1 32 624775253 624775284 3.470000e-05 60.2
14 TraesCS3B01G023800 chr1D 94.618 706 31 2 30 734 11500320 11499621 0.000000e+00 1086.0
15 TraesCS3B01G023800 chr1D 100.000 32 0 0 1 32 11500364 11500333 3.470000e-05 60.2
16 TraesCS3B01G023800 chr2D 94.233 711 32 3 25 734 642959812 642959110 0.000000e+00 1077.0
17 TraesCS3B01G023800 chr2D 94.201 707 33 3 30 734 111143245 111143945 0.000000e+00 1072.0
18 TraesCS3B01G023800 chr6D 93.201 706 41 2 30 734 377173954 377174653 0.000000e+00 1031.0
19 TraesCS3B01G023800 chr2A 93.525 695 38 4 41 734 42861182 42861870 0.000000e+00 1027.0
20 TraesCS3B01G023800 chr5A 92.776 706 44 2 30 734 601396904 601397603 0.000000e+00 1014.0
21 TraesCS3B01G023800 chr5A 81.488 578 60 14 2497 3071 487751913 487751380 6.380000e-117 431.0
22 TraesCS3B01G023800 chr7A 92.493 706 46 2 30 734 583882414 583883113 0.000000e+00 1003.0
23 TraesCS3B01G023800 chr7A 92.672 696 44 2 41 735 80205480 80204791 0.000000e+00 996.0
24 TraesCS3B01G023800 chr5B 92.221 707 47 3 30 734 660919991 660919291 0.000000e+00 994.0
25 TraesCS3B01G023800 chr1B 84.880 582 76 7 2499 3077 587502965 587502393 7.750000e-161 577.0
26 TraesCS3B01G023800 chr1B 82.942 469 67 8 2508 2973 587341103 587340645 8.320000e-111 411.0
27 TraesCS3B01G023800 chr1B 100.000 41 0 0 3181 3221 148263060 148263100 3.450000e-10 76.8
28 TraesCS3B01G023800 chr4B 79.355 155 30 2 2296 2449 419994842 419994689 1.220000e-19 108.0
29 TraesCS3B01G023800 chr4B 100.000 41 0 0 3181 3221 117407304 117407264 3.450000e-10 76.8
30 TraesCS3B01G023800 chr4B 100.000 41 0 0 3181 3221 640062774 640062814 3.450000e-10 76.8
31 TraesCS3B01G023800 chr7B 89.062 64 7 0 2322 2385 212065398 212065335 2.660000e-11 80.5
32 TraesCS3B01G023800 chr7B 100.000 41 0 0 3181 3221 78562510 78562550 3.450000e-10 76.8
33 TraesCS3B01G023800 chr7B 100.000 41 0 0 3181 3221 106760024 106759984 3.450000e-10 76.8
34 TraesCS3B01G023800 chr7B 100.000 41 0 0 3181 3221 122348092 122348132 3.450000e-10 76.8
35 TraesCS3B01G023800 chr7B 100.000 41 0 0 3181 3221 139704681 139704721 3.450000e-10 76.8
36 TraesCS3B01G023800 chr7B 100.000 41 0 0 3181 3221 532736667 532736627 3.450000e-10 76.8
37 TraesCS3B01G023800 chr6B 100.000 41 0 0 3181 3221 408218759 408218719 3.450000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G023800 chr3B 10220293 10223513 3220 False 5949.0 5949 100.0000 1 3221 1 chr3B.!!$F1 3220
1 TraesCS3B01G023800 chr3D 8327672 8328996 1324 False 1857.0 1857 92.1170 736 2051 1 chr3D.!!$F2 1315
2 TraesCS3B01G023800 chr3D 1940741 1941445 704 False 1090.0 1090 94.5150 25 734 1 chr3D.!!$F1 709
3 TraesCS3B01G023800 chr3A 12494142 12495383 1241 True 1591.0 1591 89.6120 877 2161 1 chr3A.!!$R1 1284
4 TraesCS3B01G023800 chr4D 320277285 320277988 703 True 1096.0 1096 94.6550 25 734 1 chr4D.!!$R1 709
5 TraesCS3B01G023800 chr4D 132197030 132197731 701 False 503.0 896 94.6700 2496 3182 2 chr4D.!!$F1 686
6 TraesCS3B01G023800 chr7D 579134232 579134931 699 False 1086.0 1086 94.6180 30 734 1 chr7D.!!$F2 704
7 TraesCS3B01G023800 chr7D 497341182 497341881 699 True 1081.0 1081 94.4760 30 734 1 chr7D.!!$R2 704
8 TraesCS3B01G023800 chr7D 614484909 614485605 696 False 1074.0 1074 94.3340 30 734 1 chr7D.!!$F3 704
9 TraesCS3B01G023800 chr7D 534629459 534630155 696 False 1040.0 1040 93.4840 30 734 1 chr7D.!!$F1 704
10 TraesCS3B01G023800 chr7D 624775253 624775996 743 False 576.1 1092 97.3795 1 734 2 chr7D.!!$F4 733
11 TraesCS3B01G023800 chr1D 11499621 11500364 743 True 573.1 1086 97.3090 1 734 2 chr1D.!!$R1 733
12 TraesCS3B01G023800 chr2D 642959110 642959812 702 True 1077.0 1077 94.2330 25 734 1 chr2D.!!$R1 709
13 TraesCS3B01G023800 chr2D 111143245 111143945 700 False 1072.0 1072 94.2010 30 734 1 chr2D.!!$F1 704
14 TraesCS3B01G023800 chr6D 377173954 377174653 699 False 1031.0 1031 93.2010 30 734 1 chr6D.!!$F1 704
15 TraesCS3B01G023800 chr2A 42861182 42861870 688 False 1027.0 1027 93.5250 41 734 1 chr2A.!!$F1 693
16 TraesCS3B01G023800 chr5A 601396904 601397603 699 False 1014.0 1014 92.7760 30 734 1 chr5A.!!$F1 704
17 TraesCS3B01G023800 chr5A 487751380 487751913 533 True 431.0 431 81.4880 2497 3071 1 chr5A.!!$R1 574
18 TraesCS3B01G023800 chr7A 583882414 583883113 699 False 1003.0 1003 92.4930 30 734 1 chr7A.!!$F1 704
19 TraesCS3B01G023800 chr7A 80204791 80205480 689 True 996.0 996 92.6720 41 735 1 chr7A.!!$R1 694
20 TraesCS3B01G023800 chr5B 660919291 660919991 700 True 994.0 994 92.2210 30 734 1 chr5B.!!$R1 704
21 TraesCS3B01G023800 chr1B 587502393 587502965 572 True 577.0 577 84.8800 2499 3077 1 chr1B.!!$R2 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
751 769 0.60813 AACACACGCAGGCTAGATCA 59.392 50.0 0.0 0.0 0.0 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2323 2366 0.038744 AGGACTTGATGCCTGGTTGG 59.961 55.0 0.0 0.0 39.35 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 55 2.758434 TGCATTCTGGAGGCTGCA 59.242 55.556 8.86 8.86 41.98 4.41
160 176 3.833729 TCTGGGTATTCCGGATCGA 57.166 52.632 4.15 0.00 45.65 3.59
165 181 2.299013 TGGGTATTCCGGATCGAATGAG 59.701 50.000 4.15 0.00 38.76 2.90
181 197 1.399714 TGAGGATGGCGTTCTATCGT 58.600 50.000 0.00 0.00 0.00 3.73
264 281 3.353370 TCATCTCACACATTGATGGCA 57.647 42.857 0.00 0.00 38.38 4.92
345 362 1.298014 CAGGAGGAGGTTGCTGTCC 59.702 63.158 0.00 0.00 32.51 4.02
392 409 1.348036 GTGGCCAGACAAGGTAGAAGT 59.652 52.381 5.11 0.00 0.00 3.01
417 434 7.710044 GTCTCAATATGATCTGAAGACATGTGT 59.290 37.037 1.15 0.00 0.00 3.72
466 483 2.750237 GACCGGATTGTGCCCCAC 60.750 66.667 9.46 0.00 34.56 4.61
544 562 4.161876 TGTTAGGCTTAGGTGAGTGGTTA 58.838 43.478 0.00 0.00 0.00 2.85
546 564 3.185880 AGGCTTAGGTGAGTGGTTAGA 57.814 47.619 0.00 0.00 0.00 2.10
585 603 5.254737 AGCACCCCTTCATCATATTGGATAT 59.745 40.000 0.00 0.00 0.00 1.63
658 676 2.030451 ACTTTGTACGGTCCTCGAGAAC 60.030 50.000 15.71 2.60 42.43 3.01
699 717 1.524848 CATCTCCCAGATGCAGATGC 58.475 55.000 0.61 0.00 44.69 3.91
751 769 0.608130 AACACACGCAGGCTAGATCA 59.392 50.000 0.00 0.00 0.00 2.92
775 793 5.052481 GGAAAATGCAAGCAGAAAAGTCTT 58.948 37.500 0.00 0.00 28.78 3.01
778 796 7.224557 GGAAAATGCAAGCAGAAAAGTCTTAAA 59.775 33.333 0.00 0.00 28.78 1.52
779 797 8.667076 AAAATGCAAGCAGAAAAGTCTTAAAT 57.333 26.923 0.00 0.00 28.78 1.40
790 808 4.640771 AAGTCTTAAATGACAGCCAGGA 57.359 40.909 0.00 0.00 39.27 3.86
794 812 4.762251 GTCTTAAATGACAGCCAGGACTTT 59.238 41.667 0.00 0.00 36.97 2.66
798 816 0.884704 TGACAGCCAGGACTTTTCGC 60.885 55.000 0.00 0.00 0.00 4.70
801 819 0.886490 CAGCCAGGACTTTTCGCAGT 60.886 55.000 0.00 0.00 0.00 4.40
865 886 1.466167 GTAGCGAACCTGTCACTCGTA 59.534 52.381 0.00 0.00 35.06 3.43
910 931 7.875554 GGTATTTTATTTTTGAGGAACTGGCAA 59.124 33.333 0.00 0.00 41.55 4.52
911 932 7.728847 ATTTTATTTTTGAGGAACTGGCAAC 57.271 32.000 0.00 0.00 41.55 4.17
982 1004 2.105006 ACTCGTACTCGACCTGCTAA 57.895 50.000 0.00 0.00 41.35 3.09
992 1015 4.159377 TCGACCTGCTAATTTGCAAAAG 57.841 40.909 17.19 11.18 42.83 2.27
998 1021 6.762333 ACCTGCTAATTTGCAAAAGATTTCT 58.238 32.000 17.19 0.00 42.83 2.52
1016 1039 7.910304 AGATTTCTTCTACAAATACATGTCGC 58.090 34.615 0.00 0.00 34.75 5.19
1261 1294 1.606350 GCGACTTCGACCTTCACGTG 61.606 60.000 9.94 9.94 43.02 4.49
1509 1542 1.444553 GCGTGTTCGACCTCCTCAG 60.445 63.158 0.00 0.00 39.71 3.35
1597 1630 0.100861 GGTGCTACAGCTACCTCGAC 59.899 60.000 12.68 0.00 42.66 4.20
1600 1633 1.355916 CTACAGCTACCTCGACGGC 59.644 63.158 0.00 0.00 35.61 5.68
1601 1634 2.376231 CTACAGCTACCTCGACGGCG 62.376 65.000 2.87 2.87 35.61 6.46
1602 1635 4.554363 CAGCTACCTCGACGGCGG 62.554 72.222 12.58 0.27 38.28 6.13
1825 1858 0.747283 CCAGCATCAGCAAGGTCTCC 60.747 60.000 0.00 0.00 45.49 3.71
1919 1952 0.821517 ATGGATTGACACGACGGCTA 59.178 50.000 0.00 0.00 0.00 3.93
1921 1954 0.108992 GGATTGACACGACGGCTACA 60.109 55.000 0.00 0.00 0.00 2.74
1944 1978 1.141053 ACCCACCGAATAAGCATCTCC 59.859 52.381 0.00 0.00 0.00 3.71
1948 1982 3.244353 CCACCGAATAAGCATCTCCATCT 60.244 47.826 0.00 0.00 0.00 2.90
2001 2039 7.212413 CGGACGTACGTGTGTTAATTTTATTTC 59.788 37.037 28.16 4.39 0.00 2.17
2003 2041 9.532697 GACGTACGTGTGTTAATTTTATTTCAT 57.467 29.630 28.16 0.00 0.00 2.57
2032 2070 5.427036 TGTCTGGTTTGTATCGTTTTTCC 57.573 39.130 0.00 0.00 0.00 3.13
2038 2076 5.049267 TGGTTTGTATCGTTTTTCCTAGTGC 60.049 40.000 0.00 0.00 0.00 4.40
2051 2089 4.650754 TCCTAGTGCTCGTCTATTTTCC 57.349 45.455 0.00 0.00 0.00 3.13
2052 2090 3.066342 TCCTAGTGCTCGTCTATTTTCCG 59.934 47.826 0.00 0.00 0.00 4.30
2053 2091 1.641577 AGTGCTCGTCTATTTTCCGC 58.358 50.000 0.00 0.00 0.00 5.54
2054 2092 0.297820 GTGCTCGTCTATTTTCCGCG 59.702 55.000 0.00 0.00 0.00 6.46
2055 2093 0.171679 TGCTCGTCTATTTTCCGCGA 59.828 50.000 8.23 0.00 0.00 5.87
2056 2094 1.202371 TGCTCGTCTATTTTCCGCGAT 60.202 47.619 8.23 0.00 0.00 4.58
2057 2095 1.190323 GCTCGTCTATTTTCCGCGATG 59.810 52.381 8.23 0.00 0.00 3.84
2058 2096 2.460918 CTCGTCTATTTTCCGCGATGT 58.539 47.619 8.23 0.00 0.00 3.06
2059 2097 2.858344 CTCGTCTATTTTCCGCGATGTT 59.142 45.455 8.23 0.00 0.00 2.71
2060 2098 3.255725 TCGTCTATTTTCCGCGATGTTT 58.744 40.909 8.23 0.00 0.00 2.83
2061 2099 3.305094 TCGTCTATTTTCCGCGATGTTTC 59.695 43.478 8.23 0.00 0.00 2.78
2062 2100 3.543460 CGTCTATTTTCCGCGATGTTTCC 60.543 47.826 8.23 0.00 0.00 3.13
2063 2101 3.621715 GTCTATTTTCCGCGATGTTTCCT 59.378 43.478 8.23 0.00 0.00 3.36
2064 2102 3.869246 TCTATTTTCCGCGATGTTTCCTC 59.131 43.478 8.23 0.00 0.00 3.71
2065 2103 2.178912 TTTTCCGCGATGTTTCCTCT 57.821 45.000 8.23 0.00 0.00 3.69
2066 2104 1.722011 TTTCCGCGATGTTTCCTCTC 58.278 50.000 8.23 0.00 0.00 3.20
2067 2105 0.895530 TTCCGCGATGTTTCCTCTCT 59.104 50.000 8.23 0.00 0.00 3.10
2068 2106 1.758936 TCCGCGATGTTTCCTCTCTA 58.241 50.000 8.23 0.00 0.00 2.43
2069 2107 2.307768 TCCGCGATGTTTCCTCTCTAT 58.692 47.619 8.23 0.00 0.00 1.98
2070 2108 3.483421 TCCGCGATGTTTCCTCTCTATA 58.517 45.455 8.23 0.00 0.00 1.31
2071 2109 4.079970 TCCGCGATGTTTCCTCTCTATAT 58.920 43.478 8.23 0.00 0.00 0.86
2072 2110 4.523173 TCCGCGATGTTTCCTCTCTATATT 59.477 41.667 8.23 0.00 0.00 1.28
2073 2111 4.623167 CCGCGATGTTTCCTCTCTATATTG 59.377 45.833 8.23 0.00 0.00 1.90
2074 2112 5.223382 CGCGATGTTTCCTCTCTATATTGT 58.777 41.667 0.00 0.00 0.00 2.71
2075 2113 5.117745 CGCGATGTTTCCTCTCTATATTGTG 59.882 44.000 0.00 0.00 0.00 3.33
2076 2114 5.986135 GCGATGTTTCCTCTCTATATTGTGT 59.014 40.000 0.00 0.00 0.00 3.72
2077 2115 7.145985 GCGATGTTTCCTCTCTATATTGTGTA 58.854 38.462 0.00 0.00 0.00 2.90
2078 2116 7.815068 GCGATGTTTCCTCTCTATATTGTGTAT 59.185 37.037 0.00 0.00 0.00 2.29
2099 2137 8.265998 GTGTATTTTGTTTGTCTATTTGTGTGC 58.734 33.333 0.00 0.00 0.00 4.57
2100 2138 5.940603 TTTTGTTTGTCTATTTGTGTGCG 57.059 34.783 0.00 0.00 0.00 5.34
2102 2140 5.431420 TTGTTTGTCTATTTGTGTGCGAT 57.569 34.783 0.00 0.00 0.00 4.58
2106 2149 7.680982 TGTTTGTCTATTTGTGTGCGATATAC 58.319 34.615 0.00 0.00 0.00 1.47
2127 2170 1.205893 AGAGGGCATCGTCTCTTGTTC 59.794 52.381 0.00 0.00 37.06 3.18
2171 2214 6.919775 ACATCAATGTATAGTACTCCCTCC 57.080 41.667 0.00 0.00 39.68 4.30
2172 2215 5.477291 ACATCAATGTATAGTACTCCCTCCG 59.523 44.000 0.00 0.00 39.68 4.63
2173 2216 5.057843 TCAATGTATAGTACTCCCTCCGT 57.942 43.478 0.00 0.00 0.00 4.69
2174 2217 6.191657 TCAATGTATAGTACTCCCTCCGTA 57.808 41.667 0.00 0.00 0.00 4.02
2175 2218 6.604171 TCAATGTATAGTACTCCCTCCGTAA 58.396 40.000 0.00 0.00 0.00 3.18
2176 2219 7.062322 TCAATGTATAGTACTCCCTCCGTAAA 58.938 38.462 0.00 0.00 0.00 2.01
2177 2220 7.560991 TCAATGTATAGTACTCCCTCCGTAAAA 59.439 37.037 0.00 0.00 0.00 1.52
2178 2221 7.902920 ATGTATAGTACTCCCTCCGTAAAAA 57.097 36.000 0.00 0.00 0.00 1.94
2205 2248 9.890629 AATATAAGAGTGTTTACAGAATGAGCA 57.109 29.630 0.00 0.00 39.69 4.26
2206 2249 5.931441 AAGAGTGTTTACAGAATGAGCAC 57.069 39.130 0.00 0.00 39.69 4.40
2207 2250 4.319177 AGAGTGTTTACAGAATGAGCACC 58.681 43.478 0.00 0.00 39.69 5.01
2208 2251 4.040952 AGAGTGTTTACAGAATGAGCACCT 59.959 41.667 0.00 0.00 39.69 4.00
2209 2252 4.718961 AGTGTTTACAGAATGAGCACCTT 58.281 39.130 0.00 0.00 39.69 3.50
2210 2253 5.133221 AGTGTTTACAGAATGAGCACCTTT 58.867 37.500 0.00 0.00 39.69 3.11
2211 2254 5.239525 AGTGTTTACAGAATGAGCACCTTTC 59.760 40.000 0.00 0.00 39.69 2.62
2212 2255 5.239525 GTGTTTACAGAATGAGCACCTTTCT 59.760 40.000 0.00 0.00 39.69 2.52
2213 2256 5.827797 TGTTTACAGAATGAGCACCTTTCTT 59.172 36.000 5.07 2.17 39.69 2.52
2214 2257 6.995686 TGTTTACAGAATGAGCACCTTTCTTA 59.004 34.615 5.07 1.53 39.69 2.10
2215 2258 7.500892 TGTTTACAGAATGAGCACCTTTCTTAA 59.499 33.333 5.07 5.60 39.69 1.85
2216 2259 8.515414 GTTTACAGAATGAGCACCTTTCTTAAT 58.485 33.333 5.07 0.00 39.69 1.40
2217 2260 9.733556 TTTACAGAATGAGCACCTTTCTTAATA 57.266 29.630 5.07 0.00 39.69 0.98
2218 2261 9.905713 TTACAGAATGAGCACCTTTCTTAATAT 57.094 29.630 5.07 0.00 39.69 1.28
2219 2262 8.814038 ACAGAATGAGCACCTTTCTTAATATT 57.186 30.769 0.00 0.00 39.69 1.28
2220 2263 9.905713 ACAGAATGAGCACCTTTCTTAATATTA 57.094 29.630 0.00 0.00 39.69 0.98
2247 2290 5.762179 ATGAATGAAGAGTTGTAGACCCA 57.238 39.130 0.00 0.00 0.00 4.51
2248 2291 5.762179 TGAATGAAGAGTTGTAGACCCAT 57.238 39.130 0.00 0.00 0.00 4.00
2249 2292 5.491070 TGAATGAAGAGTTGTAGACCCATG 58.509 41.667 0.00 0.00 0.00 3.66
2250 2293 5.248248 TGAATGAAGAGTTGTAGACCCATGA 59.752 40.000 0.00 0.00 0.00 3.07
2251 2294 5.965033 ATGAAGAGTTGTAGACCCATGAT 57.035 39.130 0.00 0.00 0.00 2.45
2252 2295 5.762179 TGAAGAGTTGTAGACCCATGATT 57.238 39.130 0.00 0.00 0.00 2.57
2253 2296 5.734720 TGAAGAGTTGTAGACCCATGATTC 58.265 41.667 0.00 0.00 0.00 2.52
2254 2297 5.248248 TGAAGAGTTGTAGACCCATGATTCA 59.752 40.000 0.00 0.00 0.00 2.57
2255 2298 5.965033 AGAGTTGTAGACCCATGATTCAT 57.035 39.130 0.00 0.00 0.00 2.57
2256 2299 6.319048 AGAGTTGTAGACCCATGATTCATT 57.681 37.500 0.00 0.00 0.00 2.57
2257 2300 6.725364 AGAGTTGTAGACCCATGATTCATTT 58.275 36.000 0.00 0.00 0.00 2.32
2258 2301 7.177878 AGAGTTGTAGACCCATGATTCATTTT 58.822 34.615 0.00 0.00 0.00 1.82
2259 2302 7.337942 AGAGTTGTAGACCCATGATTCATTTTC 59.662 37.037 0.00 0.00 0.00 2.29
2260 2303 6.947733 AGTTGTAGACCCATGATTCATTTTCA 59.052 34.615 0.00 0.00 0.00 2.69
2261 2304 7.616935 AGTTGTAGACCCATGATTCATTTTCAT 59.383 33.333 0.00 0.00 34.15 2.57
2262 2305 7.959658 TGTAGACCCATGATTCATTTTCATT 57.040 32.000 0.00 0.00 31.50 2.57
2263 2306 9.473007 TTGTAGACCCATGATTCATTTTCATTA 57.527 29.630 0.00 0.00 31.50 1.90
2264 2307 9.645128 TGTAGACCCATGATTCATTTTCATTAT 57.355 29.630 0.00 0.00 31.50 1.28
2267 2310 9.430399 AGACCCATGATTCATTTTCATTATCTT 57.570 29.630 0.00 0.00 31.50 2.40
2277 2320 8.292444 TCATTTTCATTATCTTACTTGGGTGG 57.708 34.615 0.00 0.00 0.00 4.61
2278 2321 6.524101 TTTTCATTATCTTACTTGGGTGGC 57.476 37.500 0.00 0.00 0.00 5.01
2279 2322 4.853468 TCATTATCTTACTTGGGTGGCA 57.147 40.909 0.00 0.00 0.00 4.92
2280 2323 4.780815 TCATTATCTTACTTGGGTGGCAG 58.219 43.478 0.00 0.00 0.00 4.85
2281 2324 2.710096 TATCTTACTTGGGTGGCAGC 57.290 50.000 8.47 8.47 0.00 5.25
2282 2325 0.392998 ATCTTACTTGGGTGGCAGCG 60.393 55.000 10.99 0.00 0.00 5.18
2283 2326 1.003839 CTTACTTGGGTGGCAGCGA 60.004 57.895 10.99 3.46 0.00 4.93
2284 2327 0.605319 CTTACTTGGGTGGCAGCGAA 60.605 55.000 13.40 13.40 0.00 4.70
2285 2328 0.887387 TTACTTGGGTGGCAGCGAAC 60.887 55.000 10.13 0.00 0.00 3.95
2286 2329 1.764571 TACTTGGGTGGCAGCGAACT 61.765 55.000 10.13 4.62 0.00 3.01
2298 2341 2.306341 AGCGAACTGAGATCACATGG 57.694 50.000 0.00 0.00 0.00 3.66
2299 2342 1.552337 AGCGAACTGAGATCACATGGT 59.448 47.619 0.00 0.00 0.00 3.55
2300 2343 1.929836 GCGAACTGAGATCACATGGTC 59.070 52.381 0.00 0.00 0.00 4.02
2301 2344 2.675032 GCGAACTGAGATCACATGGTCA 60.675 50.000 0.00 0.00 0.00 4.02
2302 2345 3.185330 CGAACTGAGATCACATGGTCAG 58.815 50.000 0.00 5.99 41.88 3.51
2303 2346 3.529533 GAACTGAGATCACATGGTCAGG 58.470 50.000 10.96 0.00 40.69 3.86
2304 2347 2.544721 ACTGAGATCACATGGTCAGGT 58.455 47.619 10.96 0.00 40.69 4.00
2305 2348 2.909006 ACTGAGATCACATGGTCAGGTT 59.091 45.455 10.96 0.00 40.69 3.50
2306 2349 3.328931 ACTGAGATCACATGGTCAGGTTT 59.671 43.478 10.96 0.00 40.69 3.27
2307 2350 3.937706 CTGAGATCACATGGTCAGGTTTC 59.062 47.826 0.00 0.00 34.06 2.78
2308 2351 3.584406 TGAGATCACATGGTCAGGTTTCT 59.416 43.478 0.00 0.00 0.00 2.52
2309 2352 4.042062 TGAGATCACATGGTCAGGTTTCTT 59.958 41.667 0.00 0.00 0.00 2.52
2310 2353 4.330250 AGATCACATGGTCAGGTTTCTTG 58.670 43.478 0.00 0.00 0.00 3.02
2311 2354 3.576078 TCACATGGTCAGGTTTCTTGT 57.424 42.857 0.00 0.00 0.00 3.16
2312 2355 3.213506 TCACATGGTCAGGTTTCTTGTG 58.786 45.455 0.00 0.00 37.68 3.33
2313 2356 2.294233 CACATGGTCAGGTTTCTTGTGG 59.706 50.000 0.00 0.00 34.79 4.17
2314 2357 2.091885 ACATGGTCAGGTTTCTTGTGGT 60.092 45.455 0.00 0.00 0.00 4.16
2315 2358 2.051334 TGGTCAGGTTTCTTGTGGTG 57.949 50.000 0.00 0.00 0.00 4.17
2316 2359 1.562008 TGGTCAGGTTTCTTGTGGTGA 59.438 47.619 0.00 0.00 0.00 4.02
2317 2360 2.025793 TGGTCAGGTTTCTTGTGGTGAA 60.026 45.455 0.00 0.00 0.00 3.18
2318 2361 3.020984 GGTCAGGTTTCTTGTGGTGAAA 58.979 45.455 0.00 0.00 0.00 2.69
2319 2362 3.636764 GGTCAGGTTTCTTGTGGTGAAAT 59.363 43.478 0.00 0.00 36.10 2.17
2320 2363 4.261614 GGTCAGGTTTCTTGTGGTGAAATC 60.262 45.833 0.00 0.00 36.10 2.17
2321 2364 4.338118 GTCAGGTTTCTTGTGGTGAAATCA 59.662 41.667 0.00 0.00 37.09 2.57
2322 2365 4.952957 TCAGGTTTCTTGTGGTGAAATCAA 59.047 37.500 0.00 0.00 37.09 2.57
2323 2366 5.043248 CAGGTTTCTTGTGGTGAAATCAAC 58.957 41.667 0.00 0.00 37.09 3.18
2324 2367 4.099419 AGGTTTCTTGTGGTGAAATCAACC 59.901 41.667 0.00 0.00 37.09 3.77
2325 2368 4.142049 GGTTTCTTGTGGTGAAATCAACCA 60.142 41.667 0.00 0.00 35.34 3.67
2326 2369 5.415221 GTTTCTTGTGGTGAAATCAACCAA 58.585 37.500 0.00 0.01 36.10 3.67
2327 2370 4.647424 TCTTGTGGTGAAATCAACCAAC 57.353 40.909 0.00 0.00 35.05 3.77
2328 2371 3.383185 TCTTGTGGTGAAATCAACCAACC 59.617 43.478 0.00 0.00 35.05 3.77
2329 2372 2.739943 TGTGGTGAAATCAACCAACCA 58.260 42.857 0.00 0.00 35.05 3.67
2330 2373 2.692557 TGTGGTGAAATCAACCAACCAG 59.307 45.455 0.00 0.00 35.05 4.00
2331 2374 2.035832 GTGGTGAAATCAACCAACCAGG 59.964 50.000 0.00 0.00 45.67 4.45
2332 2375 1.000843 GGTGAAATCAACCAACCAGGC 59.999 52.381 0.00 0.00 43.14 4.85
2333 2376 1.686052 GTGAAATCAACCAACCAGGCA 59.314 47.619 0.00 0.00 43.14 4.75
2334 2377 2.299867 GTGAAATCAACCAACCAGGCAT 59.700 45.455 0.00 0.00 43.14 4.40
2335 2378 2.562298 TGAAATCAACCAACCAGGCATC 59.438 45.455 0.00 0.00 43.14 3.91
2336 2379 2.307496 AATCAACCAACCAGGCATCA 57.693 45.000 0.00 0.00 43.14 3.07
2337 2380 2.307496 ATCAACCAACCAGGCATCAA 57.693 45.000 0.00 0.00 43.14 2.57
2338 2381 1.619654 TCAACCAACCAGGCATCAAG 58.380 50.000 0.00 0.00 43.14 3.02
2339 2382 1.133513 TCAACCAACCAGGCATCAAGT 60.134 47.619 0.00 0.00 43.14 3.16
2340 2383 1.270550 CAACCAACCAGGCATCAAGTC 59.729 52.381 0.00 0.00 43.14 3.01
2341 2384 0.251341 ACCAACCAGGCATCAAGTCC 60.251 55.000 0.00 0.00 43.14 3.85
2342 2385 0.038744 CCAACCAGGCATCAAGTCCT 59.961 55.000 0.00 0.00 0.00 3.85
2343 2386 1.281867 CCAACCAGGCATCAAGTCCTA 59.718 52.381 0.00 0.00 0.00 2.94
2344 2387 2.636830 CAACCAGGCATCAAGTCCTAG 58.363 52.381 0.00 0.00 0.00 3.02
2345 2388 2.237143 CAACCAGGCATCAAGTCCTAGA 59.763 50.000 0.00 0.00 0.00 2.43
2346 2389 1.834263 ACCAGGCATCAAGTCCTAGAC 59.166 52.381 0.00 0.00 0.00 2.59
2347 2390 1.833630 CCAGGCATCAAGTCCTAGACA 59.166 52.381 0.00 0.00 34.60 3.41
2348 2391 2.437281 CCAGGCATCAAGTCCTAGACAT 59.563 50.000 0.00 0.00 34.60 3.06
2349 2392 3.494048 CCAGGCATCAAGTCCTAGACATC 60.494 52.174 0.00 0.00 34.60 3.06
2350 2393 3.133542 CAGGCATCAAGTCCTAGACATCA 59.866 47.826 0.00 0.00 34.60 3.07
2351 2394 3.133721 AGGCATCAAGTCCTAGACATCAC 59.866 47.826 0.00 0.00 34.60 3.06
2352 2395 3.118629 GGCATCAAGTCCTAGACATCACA 60.119 47.826 0.00 0.00 34.60 3.58
2353 2396 4.444022 GGCATCAAGTCCTAGACATCACAT 60.444 45.833 0.00 0.00 34.60 3.21
2354 2397 5.121811 GCATCAAGTCCTAGACATCACATT 58.878 41.667 0.00 0.00 34.60 2.71
2355 2398 5.007430 GCATCAAGTCCTAGACATCACATTG 59.993 44.000 0.00 0.00 34.60 2.82
2356 2399 5.089970 TCAAGTCCTAGACATCACATTGG 57.910 43.478 0.00 0.00 34.60 3.16
2357 2400 4.532126 TCAAGTCCTAGACATCACATTGGT 59.468 41.667 0.00 0.00 34.60 3.67
2358 2401 4.478206 AGTCCTAGACATCACATTGGTG 57.522 45.455 0.00 0.00 39.60 4.17
2359 2402 3.198635 AGTCCTAGACATCACATTGGTGG 59.801 47.826 0.00 0.00 39.13 4.61
2360 2403 3.055094 GTCCTAGACATCACATTGGTGGT 60.055 47.826 0.00 0.00 39.51 4.16
2361 2404 3.587061 TCCTAGACATCACATTGGTGGTT 59.413 43.478 0.00 0.00 45.32 3.67
2362 2405 3.691118 CCTAGACATCACATTGGTGGTTG 59.309 47.826 0.00 0.00 45.32 3.77
2363 2406 1.888512 AGACATCACATTGGTGGTTGC 59.111 47.619 0.00 0.00 45.32 4.17
2364 2407 1.612950 GACATCACATTGGTGGTTGCA 59.387 47.619 0.00 0.00 45.32 4.08
2365 2408 2.231964 GACATCACATTGGTGGTTGCAT 59.768 45.455 0.00 0.00 45.32 3.96
2366 2409 2.633967 ACATCACATTGGTGGTTGCATT 59.366 40.909 0.00 0.00 45.32 3.56
2367 2410 3.071312 ACATCACATTGGTGGTTGCATTT 59.929 39.130 0.00 0.00 45.32 2.32
2368 2411 3.834489 TCACATTGGTGGTTGCATTTT 57.166 38.095 0.00 0.00 45.32 1.82
2369 2412 4.148128 TCACATTGGTGGTTGCATTTTT 57.852 36.364 0.00 0.00 45.32 1.94
2370 2413 4.125703 TCACATTGGTGGTTGCATTTTTC 58.874 39.130 0.00 0.00 45.32 2.29
2371 2414 4.128643 CACATTGGTGGTTGCATTTTTCT 58.871 39.130 0.00 0.00 41.45 2.52
2372 2415 4.024725 CACATTGGTGGTTGCATTTTTCTG 60.025 41.667 0.00 0.00 41.45 3.02
2373 2416 4.141756 ACATTGGTGGTTGCATTTTTCTGA 60.142 37.500 0.00 0.00 0.00 3.27
2374 2417 4.478206 TTGGTGGTTGCATTTTTCTGAA 57.522 36.364 0.00 0.00 0.00 3.02
2375 2418 4.686191 TGGTGGTTGCATTTTTCTGAAT 57.314 36.364 0.00 0.00 0.00 2.57
2376 2419 5.033589 TGGTGGTTGCATTTTTCTGAATT 57.966 34.783 0.00 0.00 0.00 2.17
2377 2420 5.435291 TGGTGGTTGCATTTTTCTGAATTT 58.565 33.333 0.00 0.00 0.00 1.82
2378 2421 6.586344 TGGTGGTTGCATTTTTCTGAATTTA 58.414 32.000 0.00 0.00 0.00 1.40
2379 2422 7.222872 TGGTGGTTGCATTTTTCTGAATTTAT 58.777 30.769 0.00 0.00 0.00 1.40
2380 2423 7.718753 TGGTGGTTGCATTTTTCTGAATTTATT 59.281 29.630 0.00 0.00 0.00 1.40
2381 2424 8.567104 GGTGGTTGCATTTTTCTGAATTTATTT 58.433 29.630 0.00 0.00 0.00 1.40
2382 2425 9.949174 GTGGTTGCATTTTTCTGAATTTATTTT 57.051 25.926 0.00 0.00 0.00 1.82
2403 2446 8.585471 ATTTTAGATCTTCCAATCATGTGTGT 57.415 30.769 0.00 0.00 0.00 3.72
2404 2447 8.408043 TTTTAGATCTTCCAATCATGTGTGTT 57.592 30.769 0.00 0.00 0.00 3.32
2405 2448 7.615582 TTAGATCTTCCAATCATGTGTGTTC 57.384 36.000 0.00 0.00 0.00 3.18
2406 2449 5.563592 AGATCTTCCAATCATGTGTGTTCA 58.436 37.500 0.00 0.00 0.00 3.18
2407 2450 6.185511 AGATCTTCCAATCATGTGTGTTCAT 58.814 36.000 0.00 0.00 0.00 2.57
2408 2451 6.662234 AGATCTTCCAATCATGTGTGTTCATT 59.338 34.615 0.00 0.00 0.00 2.57
2409 2452 6.653526 TCTTCCAATCATGTGTGTTCATTT 57.346 33.333 0.00 0.00 0.00 2.32
2410 2453 6.448852 TCTTCCAATCATGTGTGTTCATTTG 58.551 36.000 0.00 0.00 0.00 2.32
2411 2454 5.136816 TCCAATCATGTGTGTTCATTTGG 57.863 39.130 0.00 0.00 37.19 3.28
2412 2455 4.831710 TCCAATCATGTGTGTTCATTTGGA 59.168 37.500 8.05 8.05 39.92 3.53
2413 2456 5.047872 TCCAATCATGTGTGTTCATTTGGAG 60.048 40.000 8.05 0.00 38.60 3.86
2414 2457 5.047872 CCAATCATGTGTGTTCATTTGGAGA 60.048 40.000 0.00 0.00 37.64 3.71
2415 2458 6.448852 CAATCATGTGTGTTCATTTGGAGAA 58.551 36.000 0.00 0.00 0.00 2.87
2416 2459 5.694231 TCATGTGTGTTCATTTGGAGAAG 57.306 39.130 0.00 0.00 0.00 2.85
2417 2460 5.375773 TCATGTGTGTTCATTTGGAGAAGA 58.624 37.500 0.00 0.00 0.00 2.87
2418 2461 5.239306 TCATGTGTGTTCATTTGGAGAAGAC 59.761 40.000 0.00 0.00 39.08 3.01
2419 2462 3.559655 TGTGTGTTCATTTGGAGAAGACG 59.440 43.478 0.00 0.00 40.84 4.18
2420 2463 3.807622 GTGTGTTCATTTGGAGAAGACGA 59.192 43.478 0.00 0.00 40.84 4.20
2421 2464 4.452455 GTGTGTTCATTTGGAGAAGACGAT 59.548 41.667 0.00 0.00 40.84 3.73
2422 2465 5.049405 GTGTGTTCATTTGGAGAAGACGATT 60.049 40.000 0.00 0.00 40.84 3.34
2423 2466 5.530915 TGTGTTCATTTGGAGAAGACGATTT 59.469 36.000 0.00 0.00 40.84 2.17
2424 2467 6.080406 GTGTTCATTTGGAGAAGACGATTTC 58.920 40.000 0.00 0.00 31.06 2.17
2425 2468 5.107104 TGTTCATTTGGAGAAGACGATTTCG 60.107 40.000 0.00 0.00 46.33 3.46
2440 2483 5.131168 CGATTTCGTTGACTATGAAGGTG 57.869 43.478 0.00 0.00 33.45 4.00
2441 2484 4.625742 CGATTTCGTTGACTATGAAGGTGT 59.374 41.667 0.00 0.00 33.45 4.16
2442 2485 5.803461 CGATTTCGTTGACTATGAAGGTGTA 59.197 40.000 0.00 0.00 33.45 2.90
2443 2486 6.475727 CGATTTCGTTGACTATGAAGGTGTAT 59.524 38.462 0.00 0.00 33.45 2.29
2444 2487 6.961359 TTTCGTTGACTATGAAGGTGTATG 57.039 37.500 0.00 0.00 33.45 2.39
2445 2488 5.654603 TCGTTGACTATGAAGGTGTATGT 57.345 39.130 0.00 0.00 0.00 2.29
2446 2489 5.407502 TCGTTGACTATGAAGGTGTATGTG 58.592 41.667 0.00 0.00 0.00 3.21
2447 2490 4.566759 CGTTGACTATGAAGGTGTATGTGG 59.433 45.833 0.00 0.00 0.00 4.17
2448 2491 4.137116 TGACTATGAAGGTGTATGTGGC 57.863 45.455 0.00 0.00 0.00 5.01
2449 2492 3.774766 TGACTATGAAGGTGTATGTGGCT 59.225 43.478 0.00 0.00 0.00 4.75
2450 2493 4.141937 TGACTATGAAGGTGTATGTGGCTC 60.142 45.833 0.00 0.00 0.00 4.70
2451 2494 3.774766 ACTATGAAGGTGTATGTGGCTCA 59.225 43.478 0.00 0.00 0.00 4.26
2452 2495 2.768253 TGAAGGTGTATGTGGCTCAG 57.232 50.000 0.00 0.00 0.00 3.35
2453 2496 1.977854 TGAAGGTGTATGTGGCTCAGT 59.022 47.619 0.00 0.00 0.00 3.41
2454 2497 2.028112 TGAAGGTGTATGTGGCTCAGTC 60.028 50.000 0.00 0.00 0.00 3.51
2455 2498 1.944177 AGGTGTATGTGGCTCAGTCT 58.056 50.000 0.00 0.00 0.00 3.24
2456 2499 2.260822 AGGTGTATGTGGCTCAGTCTT 58.739 47.619 0.00 0.00 0.00 3.01
2457 2500 2.639839 AGGTGTATGTGGCTCAGTCTTT 59.360 45.455 0.00 0.00 0.00 2.52
2458 2501 3.003480 GGTGTATGTGGCTCAGTCTTTC 58.997 50.000 0.00 0.00 0.00 2.62
2459 2502 3.557054 GGTGTATGTGGCTCAGTCTTTCA 60.557 47.826 0.00 0.00 0.00 2.69
2460 2503 3.681897 GTGTATGTGGCTCAGTCTTTCAG 59.318 47.826 0.00 0.00 0.00 3.02
2461 2504 3.578282 TGTATGTGGCTCAGTCTTTCAGA 59.422 43.478 0.00 0.00 0.00 3.27
2462 2505 3.996921 ATGTGGCTCAGTCTTTCAGAT 57.003 42.857 0.00 0.00 0.00 2.90
2463 2506 3.049708 TGTGGCTCAGTCTTTCAGATG 57.950 47.619 0.00 0.00 0.00 2.90
2464 2507 2.369860 TGTGGCTCAGTCTTTCAGATGT 59.630 45.455 0.00 0.00 0.00 3.06
2465 2508 2.740981 GTGGCTCAGTCTTTCAGATGTG 59.259 50.000 0.00 0.00 0.00 3.21
2466 2509 1.736681 GGCTCAGTCTTTCAGATGTGC 59.263 52.381 0.00 0.00 0.00 4.57
2467 2510 2.614987 GGCTCAGTCTTTCAGATGTGCT 60.615 50.000 0.00 0.00 33.79 4.40
2468 2511 2.672381 GCTCAGTCTTTCAGATGTGCTC 59.328 50.000 0.00 0.00 31.36 4.26
2469 2512 3.863780 GCTCAGTCTTTCAGATGTGCTCA 60.864 47.826 0.00 0.00 31.36 4.26
2470 2513 4.505808 CTCAGTCTTTCAGATGTGCTCAT 58.494 43.478 0.00 0.00 36.95 2.90
2471 2514 5.658468 CTCAGTCTTTCAGATGTGCTCATA 58.342 41.667 0.32 0.00 34.06 2.15
2472 2515 5.414360 TCAGTCTTTCAGATGTGCTCATAC 58.586 41.667 0.32 0.00 34.06 2.39
2473 2516 4.267214 CAGTCTTTCAGATGTGCTCATACG 59.733 45.833 0.32 0.00 34.06 3.06
2474 2517 3.553511 GTCTTTCAGATGTGCTCATACGG 59.446 47.826 0.32 0.00 34.06 4.02
2475 2518 3.195610 TCTTTCAGATGTGCTCATACGGT 59.804 43.478 0.32 0.00 34.06 4.83
2476 2519 2.584492 TCAGATGTGCTCATACGGTG 57.416 50.000 0.32 0.00 34.06 4.94
2477 2520 1.136891 TCAGATGTGCTCATACGGTGG 59.863 52.381 0.32 0.00 34.06 4.61
2478 2521 1.134699 CAGATGTGCTCATACGGTGGT 60.135 52.381 0.32 0.00 34.06 4.16
2479 2522 1.555075 AGATGTGCTCATACGGTGGTT 59.445 47.619 0.32 0.00 34.06 3.67
2480 2523 2.764010 AGATGTGCTCATACGGTGGTTA 59.236 45.455 0.32 0.00 34.06 2.85
2481 2524 3.388024 AGATGTGCTCATACGGTGGTTAT 59.612 43.478 0.32 0.00 34.06 1.89
2482 2525 2.899976 TGTGCTCATACGGTGGTTATG 58.100 47.619 0.00 0.00 0.00 1.90
2483 2526 1.597663 GTGCTCATACGGTGGTTATGC 59.402 52.381 0.00 0.00 0.00 3.14
2484 2527 0.859232 GCTCATACGGTGGTTATGCG 59.141 55.000 0.00 0.00 0.00 4.73
2485 2528 1.805120 GCTCATACGGTGGTTATGCGT 60.805 52.381 0.00 0.00 0.00 5.24
2486 2529 1.858458 CTCATACGGTGGTTATGCGTG 59.142 52.381 0.00 0.00 0.00 5.34
2487 2530 0.303493 CATACGGTGGTTATGCGTGC 59.697 55.000 0.00 0.00 0.00 5.34
2488 2531 1.149361 ATACGGTGGTTATGCGTGCG 61.149 55.000 0.00 0.00 0.00 5.34
2489 2532 2.489539 TACGGTGGTTATGCGTGCGT 62.490 55.000 0.00 0.00 0.00 5.24
2490 2533 2.478746 GGTGGTTATGCGTGCGTG 59.521 61.111 0.00 0.00 0.00 5.34
2491 2534 2.202298 GTGGTTATGCGTGCGTGC 60.202 61.111 0.00 0.00 0.00 5.34
2520 2563 0.041576 GAAACGTTTCCAGTCGGTGC 60.042 55.000 27.01 1.71 0.00 5.01
2522 2565 2.660552 CGTTTCCAGTCGGTGCGT 60.661 61.111 0.00 0.00 0.00 5.24
2538 2581 1.952133 CGTCGGCTGAAACGTTCCA 60.952 57.895 0.00 0.00 34.30 3.53
2546 2589 0.107081 TGAAACGTTCCACCGGTCAT 59.893 50.000 2.59 0.00 0.00 3.06
2572 2615 4.641645 CTCGCAAGGGCCCACACA 62.642 66.667 27.56 1.93 36.38 3.72
2693 2736 1.008424 CGATGACCTCGTCCATCGG 60.008 63.158 14.65 0.15 42.56 4.18
2694 2737 1.300233 GATGACCTCGTCCATCGGC 60.300 63.158 0.00 0.00 40.32 5.54
2705 2748 3.803082 CATCGGCGCACCAACCTG 61.803 66.667 10.83 0.00 34.57 4.00
2717 2784 2.203625 AACCTGCCCCGCAAACAT 60.204 55.556 0.00 0.00 38.41 2.71
2839 2906 2.689785 GCGTGCTGCTACCATTGCA 61.690 57.895 0.00 0.00 41.73 4.08
2924 2992 4.457496 CGCGCTGGAGATGGTGGT 62.457 66.667 5.56 0.00 0.00 4.16
2974 3042 1.836604 AACCGCTGCCCCAATTTGT 60.837 52.632 0.00 0.00 0.00 2.83
3008 3076 2.201022 CCGGTGAGGATAGGGACGG 61.201 68.421 0.00 0.00 45.00 4.79
3048 3120 4.274147 TGGAACCAACTCTTGTTTTGCTA 58.726 39.130 0.00 0.00 33.52 3.49
3059 3131 2.294074 TGTTTTGCTAGAACAGGCGTT 58.706 42.857 0.00 0.00 38.33 4.84
3077 3149 2.095853 CGTTCGAATTTGCTGCCATAGT 59.904 45.455 0.00 0.00 0.00 2.12
3080 3152 2.677836 TCGAATTTGCTGCCATAGTGAC 59.322 45.455 0.00 0.00 0.00 3.67
3084 3156 3.921119 TTTGCTGCCATAGTGACAAAG 57.079 42.857 0.00 0.00 0.00 2.77
3182 3276 4.449405 TCGTGTTTTGCTACAATCGATCAA 59.551 37.500 0.00 0.00 0.00 2.57
3183 3277 4.783036 CGTGTTTTGCTACAATCGATCAAG 59.217 41.667 0.00 0.00 0.00 3.02
3184 3278 5.614668 CGTGTTTTGCTACAATCGATCAAGT 60.615 40.000 0.00 0.60 0.00 3.16
3185 3279 5.565259 GTGTTTTGCTACAATCGATCAAGTG 59.435 40.000 0.00 0.00 0.00 3.16
3186 3280 4.944962 TTTGCTACAATCGATCAAGTGG 57.055 40.909 0.00 1.51 0.00 4.00
3187 3281 3.885724 TGCTACAATCGATCAAGTGGA 57.114 42.857 0.00 0.00 0.00 4.02
3188 3282 4.406648 TGCTACAATCGATCAAGTGGAT 57.593 40.909 0.00 0.00 39.53 3.41
3201 3295 6.814506 ATCAAGTGGATCTTCAAGAACAAG 57.185 37.500 0.00 0.00 33.63 3.16
3202 3296 4.516698 TCAAGTGGATCTTCAAGAACAAGC 59.483 41.667 0.00 0.00 33.63 4.01
3203 3297 4.090761 AGTGGATCTTCAAGAACAAGCA 57.909 40.909 0.00 0.00 0.00 3.91
3204 3298 4.464008 AGTGGATCTTCAAGAACAAGCAA 58.536 39.130 0.00 0.00 0.00 3.91
3205 3299 4.518211 AGTGGATCTTCAAGAACAAGCAAG 59.482 41.667 0.00 0.00 0.00 4.01
3206 3300 4.516698 GTGGATCTTCAAGAACAAGCAAGA 59.483 41.667 0.00 0.00 0.00 3.02
3207 3301 5.182760 GTGGATCTTCAAGAACAAGCAAGAT 59.817 40.000 0.00 0.00 36.68 2.40
3208 3302 5.182570 TGGATCTTCAAGAACAAGCAAGATG 59.817 40.000 0.00 0.00 34.61 2.90
3209 3303 4.494350 TCTTCAAGAACAAGCAAGATGC 57.506 40.909 0.00 0.00 45.46 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 43 4.074526 GTCGCTGCAGCCTCCAGA 62.075 66.667 32.07 20.12 37.91 3.86
138 154 3.009805 TCGATCCGGAATACCCAGATCTA 59.990 47.826 9.01 0.00 38.89 1.98
149 165 2.027745 CCATCCTCATTCGATCCGGAAT 60.028 50.000 9.01 0.00 37.11 3.01
160 176 2.365617 ACGATAGAACGCCATCCTCATT 59.634 45.455 0.00 0.00 41.38 2.57
165 181 2.287103 GGAAAACGATAGAACGCCATCC 59.713 50.000 0.00 0.00 41.38 3.51
264 281 1.005275 CATGCCATCGATCTCCGCT 60.005 57.895 0.00 0.00 38.37 5.52
392 409 7.789026 ACACATGTCTTCAGATCATATTGAGA 58.211 34.615 0.00 0.00 0.00 3.27
417 434 2.103538 GTCGTCGCCGCCATCTTA 59.896 61.111 0.00 0.00 0.00 2.10
466 483 2.202878 CGAGCCACATACCGGGTG 60.203 66.667 10.66 7.02 33.42 4.61
544 562 1.045911 GCTAGCTGGGCCACTACTCT 61.046 60.000 7.70 0.00 0.00 3.24
546 564 1.306141 TGCTAGCTGGGCCACTACT 60.306 57.895 17.23 2.77 0.00 2.57
585 603 2.779282 CAACATATGCCGCCACTCA 58.221 52.632 1.58 0.00 0.00 3.41
658 676 4.202000 TGCATACGGCCACTTTATTGATTG 60.202 41.667 2.24 0.00 43.89 2.67
699 717 3.866582 GATGACCCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
747 765 4.445452 TTCTGCTTGCATTTTCCTGATC 57.555 40.909 0.00 0.00 0.00 2.92
751 769 4.343239 AGACTTTTCTGCTTGCATTTTCCT 59.657 37.500 0.00 0.00 0.00 3.36
775 793 3.751175 CGAAAAGTCCTGGCTGTCATTTA 59.249 43.478 0.00 0.00 0.00 1.40
778 796 1.813513 CGAAAAGTCCTGGCTGTCAT 58.186 50.000 0.00 0.00 0.00 3.06
779 797 0.884704 GCGAAAAGTCCTGGCTGTCA 60.885 55.000 0.00 0.00 0.00 3.58
790 808 2.163818 TCGATTCCACTGCGAAAAGT 57.836 45.000 0.00 0.00 0.00 2.66
794 812 2.163818 AACTTCGATTCCACTGCGAA 57.836 45.000 0.00 0.00 41.15 4.70
830 851 1.390123 CGCTACAAGTTGACATGTCCG 59.610 52.381 22.85 11.58 0.00 4.79
905 926 1.954362 AAACGCCAGCTTTGTTGCCA 61.954 50.000 0.00 0.00 0.00 4.92
910 931 0.314935 CCATGAAACGCCAGCTTTGT 59.685 50.000 0.00 0.00 0.00 2.83
911 932 0.388907 CCCATGAAACGCCAGCTTTG 60.389 55.000 0.00 0.00 0.00 2.77
913 934 1.228552 ACCCATGAAACGCCAGCTT 60.229 52.632 0.00 0.00 0.00 3.74
914 935 1.973281 CACCCATGAAACGCCAGCT 60.973 57.895 0.00 0.00 0.00 4.24
921 942 4.051237 GTCTTTTGCTTCACCCATGAAAC 58.949 43.478 0.00 0.00 44.28 2.78
992 1015 7.910304 AGCGACATGTATTTGTAGAAGAAATC 58.090 34.615 0.00 0.00 0.00 2.17
998 1021 6.208988 AGAGAGCGACATGTATTTGTAGAA 57.791 37.500 0.00 0.00 0.00 2.10
1014 1037 1.800586 TGCAAAGCTAACAAGAGAGCG 59.199 47.619 0.00 0.00 43.72 5.03
1016 1039 3.365767 GCCTTGCAAAGCTAACAAGAGAG 60.366 47.826 19.48 8.44 44.44 3.20
1056 1079 0.620121 AGCTCCCTCTCTCCCAAAGG 60.620 60.000 0.00 0.00 0.00 3.11
1204 1237 3.803082 CGGTCGTCCTCGCCGTAA 61.803 66.667 12.40 0.00 44.68 3.18
1261 1294 2.281484 TTGAAGGGGACGCAGCAC 60.281 61.111 0.00 0.00 0.00 4.40
1573 1606 2.742589 GAGGTAGCTGTAGCACCAAAAC 59.257 50.000 20.01 9.90 45.16 2.43
1576 1609 0.530744 CGAGGTAGCTGTAGCACCAA 59.469 55.000 20.01 0.00 45.16 3.67
1604 1637 3.864686 CGTGTACGCATGCTGGCC 61.865 66.667 17.13 0.00 0.00 5.36
1624 1657 1.303155 TTCCATCATGCACGCCACA 60.303 52.632 0.00 0.00 0.00 4.17
1688 1721 4.101790 CGTTCCCACCGCACATGC 62.102 66.667 0.00 0.00 37.78 4.06
1745 1778 4.129148 GCCCACCTCCCATGTCCC 62.129 72.222 0.00 0.00 0.00 4.46
1746 1779 3.338250 TGCCCACCTCCCATGTCC 61.338 66.667 0.00 0.00 0.00 4.02
1780 1813 1.079127 CCCAGTGTCCCATGTCGTC 60.079 63.158 0.00 0.00 0.00 4.20
1900 1933 0.821517 TAGCCGTCGTGTCAATCCAT 59.178 50.000 0.00 0.00 0.00 3.41
1919 1952 1.349688 TGCTTATTCGGTGGGTTCTGT 59.650 47.619 0.00 0.00 0.00 3.41
1921 1954 2.505819 AGATGCTTATTCGGTGGGTTCT 59.494 45.455 0.00 0.00 0.00 3.01
2001 2039 1.603802 ACAAACCAGACAACTGCGATG 59.396 47.619 0.00 0.00 42.25 3.84
2003 2041 2.605837 TACAAACCAGACAACTGCGA 57.394 45.000 0.00 0.00 42.25 5.10
2032 2070 2.789893 GCGGAAAATAGACGAGCACTAG 59.210 50.000 0.00 0.00 0.00 2.57
2038 2076 2.460918 ACATCGCGGAAAATAGACGAG 58.539 47.619 6.13 0.00 36.05 4.18
2051 2089 5.117745 CACAATATAGAGAGGAAACATCGCG 59.882 44.000 0.00 0.00 0.00 5.87
2052 2090 5.986135 ACACAATATAGAGAGGAAACATCGC 59.014 40.000 0.00 0.00 0.00 4.58
2053 2091 9.698309 AATACACAATATAGAGAGGAAACATCG 57.302 33.333 0.00 0.00 0.00 3.84
2071 2109 9.862371 ACACAAATAGACAAACAAAATACACAA 57.138 25.926 0.00 0.00 0.00 3.33
2072 2110 9.295214 CACACAAATAGACAAACAAAATACACA 57.705 29.630 0.00 0.00 0.00 3.72
2073 2111 8.265998 GCACACAAATAGACAAACAAAATACAC 58.734 33.333 0.00 0.00 0.00 2.90
2074 2112 7.166638 CGCACACAAATAGACAAACAAAATACA 59.833 33.333 0.00 0.00 0.00 2.29
2075 2113 7.377397 TCGCACACAAATAGACAAACAAAATAC 59.623 33.333 0.00 0.00 0.00 1.89
2076 2114 7.418408 TCGCACACAAATAGACAAACAAAATA 58.582 30.769 0.00 0.00 0.00 1.40
2077 2115 6.269315 TCGCACACAAATAGACAAACAAAAT 58.731 32.000 0.00 0.00 0.00 1.82
2078 2116 5.641709 TCGCACACAAATAGACAAACAAAA 58.358 33.333 0.00 0.00 0.00 2.44
2099 2137 2.750166 AGACGATGCCCTCTGTATATCG 59.250 50.000 0.00 0.00 44.33 2.92
2100 2138 4.013728 AGAGACGATGCCCTCTGTATATC 58.986 47.826 0.00 0.00 38.26 1.63
2102 2140 3.510531 AGAGACGATGCCCTCTGTATA 57.489 47.619 0.00 0.00 38.26 1.47
2106 2149 0.534412 ACAAGAGACGATGCCCTCTG 59.466 55.000 0.00 0.00 39.49 3.35
2147 2190 6.657966 CGGAGGGAGTACTATACATTGATGTA 59.342 42.308 6.32 6.32 46.21 2.29
2179 2222 9.890629 TGCTCATTCTGTAAACACTCTTATATT 57.109 29.630 0.00 0.00 0.00 1.28
2180 2223 9.319143 GTGCTCATTCTGTAAACACTCTTATAT 57.681 33.333 0.00 0.00 0.00 0.86
2181 2224 7.764443 GGTGCTCATTCTGTAAACACTCTTATA 59.236 37.037 0.00 0.00 0.00 0.98
2182 2225 6.595716 GGTGCTCATTCTGTAAACACTCTTAT 59.404 38.462 0.00 0.00 0.00 1.73
2183 2226 5.932303 GGTGCTCATTCTGTAAACACTCTTA 59.068 40.000 0.00 0.00 0.00 2.10
2184 2227 4.757149 GGTGCTCATTCTGTAAACACTCTT 59.243 41.667 0.00 0.00 0.00 2.85
2185 2228 4.040952 AGGTGCTCATTCTGTAAACACTCT 59.959 41.667 0.00 0.00 0.00 3.24
2186 2229 4.319177 AGGTGCTCATTCTGTAAACACTC 58.681 43.478 0.00 0.00 0.00 3.51
2187 2230 4.357918 AGGTGCTCATTCTGTAAACACT 57.642 40.909 0.00 0.00 0.00 3.55
2188 2231 5.239525 AGAAAGGTGCTCATTCTGTAAACAC 59.760 40.000 5.56 0.00 32.42 3.32
2189 2232 5.376625 AGAAAGGTGCTCATTCTGTAAACA 58.623 37.500 5.56 0.00 32.42 2.83
2190 2233 5.948992 AGAAAGGTGCTCATTCTGTAAAC 57.051 39.130 5.56 0.00 32.42 2.01
2191 2234 8.635765 ATTAAGAAAGGTGCTCATTCTGTAAA 57.364 30.769 6.78 4.08 33.86 2.01
2192 2235 9.905713 ATATTAAGAAAGGTGCTCATTCTGTAA 57.094 29.630 6.78 7.90 33.86 2.41
2193 2236 9.905713 AATATTAAGAAAGGTGCTCATTCTGTA 57.094 29.630 6.78 3.22 33.86 2.74
2194 2237 8.814038 AATATTAAGAAAGGTGCTCATTCTGT 57.186 30.769 6.78 2.35 33.86 3.41
2221 2264 9.159254 TGGGTCTACAACTCTTCATTCATATAT 57.841 33.333 0.00 0.00 0.00 0.86
2222 2265 8.547481 TGGGTCTACAACTCTTCATTCATATA 57.453 34.615 0.00 0.00 0.00 0.86
2223 2266 7.437713 TGGGTCTACAACTCTTCATTCATAT 57.562 36.000 0.00 0.00 0.00 1.78
2224 2267 6.867519 TGGGTCTACAACTCTTCATTCATA 57.132 37.500 0.00 0.00 0.00 2.15
2225 2268 5.762179 TGGGTCTACAACTCTTCATTCAT 57.238 39.130 0.00 0.00 0.00 2.57
2226 2269 5.248248 TCATGGGTCTACAACTCTTCATTCA 59.752 40.000 0.00 0.00 0.00 2.57
2227 2270 5.734720 TCATGGGTCTACAACTCTTCATTC 58.265 41.667 0.00 0.00 0.00 2.67
2228 2271 5.762179 TCATGGGTCTACAACTCTTCATT 57.238 39.130 0.00 0.00 0.00 2.57
2229 2272 5.965033 ATCATGGGTCTACAACTCTTCAT 57.035 39.130 0.00 0.00 0.00 2.57
2230 2273 5.248248 TGAATCATGGGTCTACAACTCTTCA 59.752 40.000 0.00 0.00 0.00 3.02
2231 2274 5.734720 TGAATCATGGGTCTACAACTCTTC 58.265 41.667 0.00 0.00 0.00 2.87
2232 2275 5.762179 TGAATCATGGGTCTACAACTCTT 57.238 39.130 0.00 0.00 0.00 2.85
2233 2276 5.965033 ATGAATCATGGGTCTACAACTCT 57.035 39.130 0.00 0.00 0.00 3.24
2234 2277 7.121168 TGAAAATGAATCATGGGTCTACAACTC 59.879 37.037 0.00 0.00 0.00 3.01
2235 2278 6.947733 TGAAAATGAATCATGGGTCTACAACT 59.052 34.615 0.00 0.00 0.00 3.16
2236 2279 7.156876 TGAAAATGAATCATGGGTCTACAAC 57.843 36.000 0.00 0.00 0.00 3.32
2237 2280 7.959658 ATGAAAATGAATCATGGGTCTACAA 57.040 32.000 0.00 0.00 36.21 2.41
2238 2281 7.959658 AATGAAAATGAATCATGGGTCTACA 57.040 32.000 0.00 0.00 37.58 2.74
2241 2284 9.430399 AAGATAATGAAAATGAATCATGGGTCT 57.570 29.630 0.00 0.00 37.58 3.85
2251 2294 8.748412 CCACCCAAGTAAGATAATGAAAATGAA 58.252 33.333 0.00 0.00 0.00 2.57
2252 2295 7.147915 GCCACCCAAGTAAGATAATGAAAATGA 60.148 37.037 0.00 0.00 0.00 2.57
2253 2296 6.980397 GCCACCCAAGTAAGATAATGAAAATG 59.020 38.462 0.00 0.00 0.00 2.32
2254 2297 6.667414 TGCCACCCAAGTAAGATAATGAAAAT 59.333 34.615 0.00 0.00 0.00 1.82
2255 2298 6.013379 TGCCACCCAAGTAAGATAATGAAAA 58.987 36.000 0.00 0.00 0.00 2.29
2256 2299 5.575157 TGCCACCCAAGTAAGATAATGAAA 58.425 37.500 0.00 0.00 0.00 2.69
2257 2300 5.186256 TGCCACCCAAGTAAGATAATGAA 57.814 39.130 0.00 0.00 0.00 2.57
2258 2301 4.780815 CTGCCACCCAAGTAAGATAATGA 58.219 43.478 0.00 0.00 0.00 2.57
2259 2302 3.316308 GCTGCCACCCAAGTAAGATAATG 59.684 47.826 0.00 0.00 0.00 1.90
2260 2303 3.555966 GCTGCCACCCAAGTAAGATAAT 58.444 45.455 0.00 0.00 0.00 1.28
2261 2304 2.679639 CGCTGCCACCCAAGTAAGATAA 60.680 50.000 0.00 0.00 0.00 1.75
2262 2305 1.134521 CGCTGCCACCCAAGTAAGATA 60.135 52.381 0.00 0.00 0.00 1.98
2263 2306 0.392998 CGCTGCCACCCAAGTAAGAT 60.393 55.000 0.00 0.00 0.00 2.40
2264 2307 1.003839 CGCTGCCACCCAAGTAAGA 60.004 57.895 0.00 0.00 0.00 2.10
2265 2308 0.605319 TTCGCTGCCACCCAAGTAAG 60.605 55.000 0.00 0.00 0.00 2.34
2266 2309 0.887387 GTTCGCTGCCACCCAAGTAA 60.887 55.000 0.00 0.00 0.00 2.24
2267 2310 1.302192 GTTCGCTGCCACCCAAGTA 60.302 57.895 0.00 0.00 0.00 2.24
2268 2311 2.594592 GTTCGCTGCCACCCAAGT 60.595 61.111 0.00 0.00 0.00 3.16
2269 2312 2.281761 AGTTCGCTGCCACCCAAG 60.282 61.111 0.00 0.00 0.00 3.61
2270 2313 2.594303 CAGTTCGCTGCCACCCAA 60.594 61.111 0.00 0.00 38.53 4.12
2271 2314 3.535629 CTCAGTTCGCTGCCACCCA 62.536 63.158 0.00 0.00 44.62 4.51
2272 2315 2.527951 ATCTCAGTTCGCTGCCACCC 62.528 60.000 0.00 0.00 44.62 4.61
2273 2316 1.078848 ATCTCAGTTCGCTGCCACC 60.079 57.895 0.00 0.00 44.62 4.61
2274 2317 0.390340 TGATCTCAGTTCGCTGCCAC 60.390 55.000 0.00 0.00 44.62 5.01
2275 2318 0.390340 GTGATCTCAGTTCGCTGCCA 60.390 55.000 0.00 0.00 44.62 4.92
2276 2319 0.390340 TGTGATCTCAGTTCGCTGCC 60.390 55.000 0.00 0.00 44.62 4.85
2277 2320 1.326852 CATGTGATCTCAGTTCGCTGC 59.673 52.381 3.58 0.00 44.62 5.25
2278 2321 1.931841 CCATGTGATCTCAGTTCGCTG 59.068 52.381 3.58 0.00 46.29 5.18
2279 2322 1.552337 ACCATGTGATCTCAGTTCGCT 59.448 47.619 3.58 0.00 0.00 4.93
2280 2323 1.929836 GACCATGTGATCTCAGTTCGC 59.070 52.381 3.58 0.00 0.00 4.70
2281 2324 3.185330 CTGACCATGTGATCTCAGTTCG 58.815 50.000 3.58 0.00 0.00 3.95
2282 2325 3.055530 ACCTGACCATGTGATCTCAGTTC 60.056 47.826 3.58 0.88 0.00 3.01
2283 2326 2.909006 ACCTGACCATGTGATCTCAGTT 59.091 45.455 3.58 0.00 0.00 3.16
2284 2327 2.544721 ACCTGACCATGTGATCTCAGT 58.455 47.619 3.58 0.00 0.00 3.41
2285 2328 3.623906 AACCTGACCATGTGATCTCAG 57.376 47.619 3.58 2.38 0.00 3.35
2286 2329 3.584406 AGAAACCTGACCATGTGATCTCA 59.416 43.478 0.00 0.00 0.00 3.27
2287 2330 4.213564 AGAAACCTGACCATGTGATCTC 57.786 45.455 0.00 0.00 0.00 2.75
2288 2331 4.202503 ACAAGAAACCTGACCATGTGATCT 60.203 41.667 0.00 0.00 0.00 2.75
2289 2332 4.074970 ACAAGAAACCTGACCATGTGATC 58.925 43.478 0.00 0.00 0.00 2.92
2290 2333 3.822735 CACAAGAAACCTGACCATGTGAT 59.177 43.478 0.00 0.00 39.10 3.06
2291 2334 3.213506 CACAAGAAACCTGACCATGTGA 58.786 45.455 0.00 0.00 39.10 3.58
2292 2335 2.294233 CCACAAGAAACCTGACCATGTG 59.706 50.000 0.00 0.00 37.14 3.21
2293 2336 2.091885 ACCACAAGAAACCTGACCATGT 60.092 45.455 0.00 0.00 0.00 3.21
2294 2337 2.294233 CACCACAAGAAACCTGACCATG 59.706 50.000 0.00 0.00 0.00 3.66
2295 2338 2.174639 TCACCACAAGAAACCTGACCAT 59.825 45.455 0.00 0.00 0.00 3.55
2296 2339 1.562008 TCACCACAAGAAACCTGACCA 59.438 47.619 0.00 0.00 0.00 4.02
2297 2340 2.341846 TCACCACAAGAAACCTGACC 57.658 50.000 0.00 0.00 0.00 4.02
2298 2341 4.338118 TGATTTCACCACAAGAAACCTGAC 59.662 41.667 0.00 0.00 37.76 3.51
2299 2342 4.531854 TGATTTCACCACAAGAAACCTGA 58.468 39.130 0.00 0.00 37.76 3.86
2300 2343 4.916983 TGATTTCACCACAAGAAACCTG 57.083 40.909 0.00 0.00 37.76 4.00
2301 2344 4.099419 GGTTGATTTCACCACAAGAAACCT 59.901 41.667 0.00 0.00 37.76 3.50
2302 2345 4.142049 TGGTTGATTTCACCACAAGAAACC 60.142 41.667 0.00 0.00 37.76 3.27
2303 2346 5.004922 TGGTTGATTTCACCACAAGAAAC 57.995 39.130 0.00 0.00 37.76 2.78
2304 2347 5.415221 GTTGGTTGATTTCACCACAAGAAA 58.585 37.500 0.00 0.00 39.11 2.52
2305 2348 4.142049 GGTTGGTTGATTTCACCACAAGAA 60.142 41.667 0.00 0.00 32.63 2.52
2306 2349 3.383185 GGTTGGTTGATTTCACCACAAGA 59.617 43.478 0.00 0.00 32.63 3.02
2307 2350 3.131933 TGGTTGGTTGATTTCACCACAAG 59.868 43.478 0.00 0.00 32.63 3.16
2308 2351 3.099905 TGGTTGGTTGATTTCACCACAA 58.900 40.909 0.00 0.00 32.63 3.33
2309 2352 2.692557 CTGGTTGGTTGATTTCACCACA 59.307 45.455 0.00 0.00 32.63 4.17
2310 2353 2.035832 CCTGGTTGGTTGATTTCACCAC 59.964 50.000 0.00 0.00 32.63 4.16
2311 2354 2.315176 CCTGGTTGGTTGATTTCACCA 58.685 47.619 0.00 0.00 0.00 4.17
2312 2355 1.000843 GCCTGGTTGGTTGATTTCACC 59.999 52.381 0.00 0.00 38.35 4.02
2313 2356 1.686052 TGCCTGGTTGGTTGATTTCAC 59.314 47.619 0.00 0.00 38.35 3.18
2314 2357 2.079170 TGCCTGGTTGGTTGATTTCA 57.921 45.000 0.00 0.00 38.35 2.69
2315 2358 2.562298 TGATGCCTGGTTGGTTGATTTC 59.438 45.455 0.00 0.00 38.35 2.17
2316 2359 2.607499 TGATGCCTGGTTGGTTGATTT 58.393 42.857 0.00 0.00 38.35 2.17
2317 2360 2.307496 TGATGCCTGGTTGGTTGATT 57.693 45.000 0.00 0.00 38.35 2.57
2318 2361 2.173519 CTTGATGCCTGGTTGGTTGAT 58.826 47.619 0.00 0.00 38.35 2.57
2319 2362 1.133513 ACTTGATGCCTGGTTGGTTGA 60.134 47.619 0.00 0.00 38.35 3.18
2320 2363 1.270550 GACTTGATGCCTGGTTGGTTG 59.729 52.381 0.00 0.00 38.35 3.77
2321 2364 1.620822 GACTTGATGCCTGGTTGGTT 58.379 50.000 0.00 0.00 38.35 3.67
2322 2365 0.251341 GGACTTGATGCCTGGTTGGT 60.251 55.000 0.00 0.00 38.35 3.67
2323 2366 0.038744 AGGACTTGATGCCTGGTTGG 59.961 55.000 0.00 0.00 39.35 3.77
2324 2367 2.237143 TCTAGGACTTGATGCCTGGTTG 59.763 50.000 0.00 0.00 34.68 3.77
2325 2368 2.237392 GTCTAGGACTTGATGCCTGGTT 59.763 50.000 0.00 0.00 34.68 3.67
2326 2369 1.834263 GTCTAGGACTTGATGCCTGGT 59.166 52.381 0.00 0.00 34.68 4.00
2327 2370 1.833630 TGTCTAGGACTTGATGCCTGG 59.166 52.381 0.00 0.00 35.73 4.45
2328 2371 3.133542 TGATGTCTAGGACTTGATGCCTG 59.866 47.826 0.00 0.00 35.73 4.85
2329 2372 3.133721 GTGATGTCTAGGACTTGATGCCT 59.866 47.826 0.00 0.00 38.31 4.75
2330 2373 3.118629 TGTGATGTCTAGGACTTGATGCC 60.119 47.826 0.00 0.00 33.15 4.40
2331 2374 4.128925 TGTGATGTCTAGGACTTGATGC 57.871 45.455 0.00 0.00 33.15 3.91
2332 2375 5.526479 CCAATGTGATGTCTAGGACTTGATG 59.474 44.000 0.00 0.00 33.15 3.07
2333 2376 5.190528 ACCAATGTGATGTCTAGGACTTGAT 59.809 40.000 0.00 0.00 33.15 2.57
2334 2377 4.532126 ACCAATGTGATGTCTAGGACTTGA 59.468 41.667 0.00 0.00 33.15 3.02
2335 2378 4.633126 CACCAATGTGATGTCTAGGACTTG 59.367 45.833 0.00 0.00 45.76 3.16
2336 2379 4.323792 CCACCAATGTGATGTCTAGGACTT 60.324 45.833 0.00 0.00 45.76 3.01
2337 2380 3.198635 CCACCAATGTGATGTCTAGGACT 59.801 47.826 0.00 0.00 45.76 3.85
2338 2381 3.055094 ACCACCAATGTGATGTCTAGGAC 60.055 47.826 0.00 0.00 45.76 3.85
2339 2382 3.181329 ACCACCAATGTGATGTCTAGGA 58.819 45.455 0.00 0.00 45.76 2.94
2340 2383 3.634397 ACCACCAATGTGATGTCTAGG 57.366 47.619 0.00 0.00 45.76 3.02
2341 2384 3.127548 GCAACCACCAATGTGATGTCTAG 59.872 47.826 0.00 0.00 45.76 2.43
2342 2385 3.081061 GCAACCACCAATGTGATGTCTA 58.919 45.455 0.00 0.00 45.76 2.59
2343 2386 1.888512 GCAACCACCAATGTGATGTCT 59.111 47.619 0.00 0.00 45.76 3.41
2344 2387 1.612950 TGCAACCACCAATGTGATGTC 59.387 47.619 0.00 0.00 45.76 3.06
2345 2388 1.702182 TGCAACCACCAATGTGATGT 58.298 45.000 0.00 0.00 45.76 3.06
2346 2389 3.322211 AATGCAACCACCAATGTGATG 57.678 42.857 0.00 0.00 45.76 3.07
2347 2390 4.354893 AAAATGCAACCACCAATGTGAT 57.645 36.364 0.00 0.00 45.76 3.06
2348 2391 3.834489 AAAATGCAACCACCAATGTGA 57.166 38.095 0.00 0.00 45.76 3.58
2349 2392 4.024725 CAGAAAAATGCAACCACCAATGTG 60.025 41.667 0.00 0.00 42.39 3.21
2350 2393 4.128643 CAGAAAAATGCAACCACCAATGT 58.871 39.130 0.00 0.00 0.00 2.71
2351 2394 4.378774 TCAGAAAAATGCAACCACCAATG 58.621 39.130 0.00 0.00 0.00 2.82
2352 2395 4.686191 TCAGAAAAATGCAACCACCAAT 57.314 36.364 0.00 0.00 0.00 3.16
2353 2396 4.478206 TTCAGAAAAATGCAACCACCAA 57.522 36.364 0.00 0.00 0.00 3.67
2354 2397 4.686191 ATTCAGAAAAATGCAACCACCA 57.314 36.364 0.00 0.00 0.00 4.17
2355 2398 7.671495 ATAAATTCAGAAAAATGCAACCACC 57.329 32.000 0.00 0.00 0.00 4.61
2356 2399 9.949174 AAAATAAATTCAGAAAAATGCAACCAC 57.051 25.926 0.00 0.00 0.00 4.16
2377 2420 9.685276 ACACACATGATTGGAAGATCTAAAATA 57.315 29.630 0.00 0.00 0.00 1.40
2378 2421 8.585471 ACACACATGATTGGAAGATCTAAAAT 57.415 30.769 0.00 0.00 0.00 1.82
2379 2422 8.408043 AACACACATGATTGGAAGATCTAAAA 57.592 30.769 0.00 0.00 0.00 1.52
2380 2423 7.665145 TGAACACACATGATTGGAAGATCTAAA 59.335 33.333 0.00 0.00 0.00 1.85
2381 2424 7.167535 TGAACACACATGATTGGAAGATCTAA 58.832 34.615 0.00 0.00 0.00 2.10
2382 2425 6.710278 TGAACACACATGATTGGAAGATCTA 58.290 36.000 0.00 0.00 0.00 1.98
2383 2426 5.563592 TGAACACACATGATTGGAAGATCT 58.436 37.500 0.00 0.00 0.00 2.75
2384 2427 5.885230 TGAACACACATGATTGGAAGATC 57.115 39.130 0.00 0.00 0.00 2.75
2385 2428 6.845758 AATGAACACACATGATTGGAAGAT 57.154 33.333 0.00 0.00 0.00 2.40
2386 2429 6.448852 CAAATGAACACACATGATTGGAAGA 58.551 36.000 0.00 0.00 0.00 2.87
2387 2430 5.636121 CCAAATGAACACACATGATTGGAAG 59.364 40.000 0.00 0.00 38.98 3.46
2388 2431 5.303845 TCCAAATGAACACACATGATTGGAA 59.696 36.000 0.00 0.00 40.80 3.53
2389 2432 4.831710 TCCAAATGAACACACATGATTGGA 59.168 37.500 0.00 0.00 41.14 3.53
2390 2433 5.047872 TCTCCAAATGAACACACATGATTGG 60.048 40.000 0.00 0.00 38.48 3.16
2391 2434 6.016213 TCTCCAAATGAACACACATGATTG 57.984 37.500 0.00 0.00 0.00 2.67
2392 2435 6.491062 TCTTCTCCAAATGAACACACATGATT 59.509 34.615 0.00 0.00 0.00 2.57
2393 2436 6.005823 TCTTCTCCAAATGAACACACATGAT 58.994 36.000 0.00 0.00 0.00 2.45
2394 2437 5.239306 GTCTTCTCCAAATGAACACACATGA 59.761 40.000 0.00 0.00 0.00 3.07
2395 2438 5.455392 GTCTTCTCCAAATGAACACACATG 58.545 41.667 0.00 0.00 0.00 3.21
2396 2439 4.214119 CGTCTTCTCCAAATGAACACACAT 59.786 41.667 0.00 0.00 0.00 3.21
2397 2440 3.559655 CGTCTTCTCCAAATGAACACACA 59.440 43.478 0.00 0.00 0.00 3.72
2398 2441 3.807622 TCGTCTTCTCCAAATGAACACAC 59.192 43.478 0.00 0.00 0.00 3.82
2399 2442 4.066646 TCGTCTTCTCCAAATGAACACA 57.933 40.909 0.00 0.00 0.00 3.72
2400 2443 5.613358 AATCGTCTTCTCCAAATGAACAC 57.387 39.130 0.00 0.00 0.00 3.32
2401 2444 5.107104 CGAAATCGTCTTCTCCAAATGAACA 60.107 40.000 0.00 0.00 34.11 3.18
2402 2445 5.316770 CGAAATCGTCTTCTCCAAATGAAC 58.683 41.667 0.00 0.00 34.11 3.18
2403 2446 5.530519 CGAAATCGTCTTCTCCAAATGAA 57.469 39.130 0.00 0.00 34.11 2.57
2418 2461 4.625742 ACACCTTCATAGTCAACGAAATCG 59.374 41.667 0.48 0.48 46.33 3.34
2419 2462 7.277981 ACATACACCTTCATAGTCAACGAAATC 59.722 37.037 0.00 0.00 0.00 2.17
2420 2463 7.064609 CACATACACCTTCATAGTCAACGAAAT 59.935 37.037 0.00 0.00 0.00 2.17
2421 2464 6.367695 CACATACACCTTCATAGTCAACGAAA 59.632 38.462 0.00 0.00 0.00 3.46
2422 2465 5.867174 CACATACACCTTCATAGTCAACGAA 59.133 40.000 0.00 0.00 0.00 3.85
2423 2466 5.407502 CACATACACCTTCATAGTCAACGA 58.592 41.667 0.00 0.00 0.00 3.85
2424 2467 4.566759 CCACATACACCTTCATAGTCAACG 59.433 45.833 0.00 0.00 0.00 4.10
2425 2468 4.332819 GCCACATACACCTTCATAGTCAAC 59.667 45.833 0.00 0.00 0.00 3.18
2426 2469 4.225042 AGCCACATACACCTTCATAGTCAA 59.775 41.667 0.00 0.00 0.00 3.18
2427 2470 3.774766 AGCCACATACACCTTCATAGTCA 59.225 43.478 0.00 0.00 0.00 3.41
2428 2471 4.141937 TGAGCCACATACACCTTCATAGTC 60.142 45.833 0.00 0.00 0.00 2.59
2429 2472 3.774766 TGAGCCACATACACCTTCATAGT 59.225 43.478 0.00 0.00 0.00 2.12
2430 2473 4.141846 ACTGAGCCACATACACCTTCATAG 60.142 45.833 0.00 0.00 0.00 2.23
2431 2474 3.774766 ACTGAGCCACATACACCTTCATA 59.225 43.478 0.00 0.00 0.00 2.15
2432 2475 2.573462 ACTGAGCCACATACACCTTCAT 59.427 45.455 0.00 0.00 0.00 2.57
2433 2476 1.977854 ACTGAGCCACATACACCTTCA 59.022 47.619 0.00 0.00 0.00 3.02
2434 2477 2.234908 AGACTGAGCCACATACACCTTC 59.765 50.000 0.00 0.00 0.00 3.46
2435 2478 2.260822 AGACTGAGCCACATACACCTT 58.739 47.619 0.00 0.00 0.00 3.50
2436 2479 1.944177 AGACTGAGCCACATACACCT 58.056 50.000 0.00 0.00 0.00 4.00
2437 2480 2.770164 AAGACTGAGCCACATACACC 57.230 50.000 0.00 0.00 0.00 4.16
2438 2481 3.664107 TGAAAGACTGAGCCACATACAC 58.336 45.455 0.00 0.00 0.00 2.90
2439 2482 3.578282 TCTGAAAGACTGAGCCACATACA 59.422 43.478 0.00 0.00 38.67 2.29
2440 2483 4.193826 TCTGAAAGACTGAGCCACATAC 57.806 45.455 0.00 0.00 38.67 2.39
2454 2497 3.308053 CACCGTATGAGCACATCTGAAAG 59.692 47.826 0.00 0.00 37.87 2.62
2455 2498 3.261580 CACCGTATGAGCACATCTGAAA 58.738 45.455 0.00 0.00 37.87 2.69
2456 2499 2.418609 CCACCGTATGAGCACATCTGAA 60.419 50.000 0.00 0.00 37.87 3.02
2457 2500 1.136891 CCACCGTATGAGCACATCTGA 59.863 52.381 0.00 0.00 37.87 3.27
2458 2501 1.134699 ACCACCGTATGAGCACATCTG 60.135 52.381 0.00 0.00 37.87 2.90
2459 2502 1.195115 ACCACCGTATGAGCACATCT 58.805 50.000 0.00 0.00 37.87 2.90
2460 2503 2.024176 AACCACCGTATGAGCACATC 57.976 50.000 0.00 0.00 37.87 3.06
2461 2504 3.466836 CATAACCACCGTATGAGCACAT 58.533 45.455 1.31 1.31 40.16 3.21
2462 2505 2.899976 CATAACCACCGTATGAGCACA 58.100 47.619 0.00 0.00 0.00 4.57
2463 2506 1.597663 GCATAACCACCGTATGAGCAC 59.402 52.381 0.00 0.00 0.00 4.40
2464 2507 1.804746 CGCATAACCACCGTATGAGCA 60.805 52.381 0.00 0.00 0.00 4.26
2465 2508 0.859232 CGCATAACCACCGTATGAGC 59.141 55.000 0.00 0.00 0.00 4.26
2466 2509 1.858458 CACGCATAACCACCGTATGAG 59.142 52.381 0.00 0.00 33.39 2.90
2467 2510 1.929230 CACGCATAACCACCGTATGA 58.071 50.000 0.00 0.00 33.39 2.15
2468 2511 0.303493 GCACGCATAACCACCGTATG 59.697 55.000 0.00 0.00 33.39 2.39
2469 2512 1.149361 CGCACGCATAACCACCGTAT 61.149 55.000 0.00 0.00 33.39 3.06
2470 2513 1.806351 CGCACGCATAACCACCGTA 60.806 57.895 0.00 0.00 33.39 4.02
2471 2514 3.115892 CGCACGCATAACCACCGT 61.116 61.111 0.00 0.00 35.29 4.83
2472 2515 3.115892 ACGCACGCATAACCACCG 61.116 61.111 0.00 0.00 0.00 4.94
2473 2516 2.478746 CACGCACGCATAACCACC 59.521 61.111 0.00 0.00 0.00 4.61
2474 2517 2.202298 GCACGCACGCATAACCAC 60.202 61.111 0.00 0.00 0.00 4.16
2475 2518 2.666526 TGCACGCACGCATAACCA 60.667 55.556 0.00 0.00 36.86 3.67
2482 2525 1.010797 CCTATGAATGCACGCACGC 60.011 57.895 0.00 0.00 0.00 5.34
2483 2526 0.809636 TCCCTATGAATGCACGCACG 60.810 55.000 0.00 0.00 0.00 5.34
2484 2527 1.378531 TTCCCTATGAATGCACGCAC 58.621 50.000 0.00 0.00 0.00 5.34
2485 2528 1.742831 GTTTCCCTATGAATGCACGCA 59.257 47.619 0.00 0.00 31.67 5.24
2486 2529 1.268032 CGTTTCCCTATGAATGCACGC 60.268 52.381 0.00 0.00 30.61 5.34
2487 2530 2.006888 ACGTTTCCCTATGAATGCACG 58.993 47.619 0.00 0.00 39.47 5.34
2488 2531 4.412207 GAAACGTTTCCCTATGAATGCAC 58.588 43.478 27.01 0.56 31.67 4.57
2489 2532 4.695217 GAAACGTTTCCCTATGAATGCA 57.305 40.909 27.01 0.00 31.67 3.96
2520 2563 1.952133 TGGAACGTTTCAGCCGACG 60.952 57.895 4.79 0.00 44.34 5.12
2522 2565 1.595929 GGTGGAACGTTTCAGCCGA 60.596 57.895 25.14 0.00 38.12 5.54
2538 2581 1.229209 AGAGTGGGACATGACCGGT 60.229 57.895 6.92 6.92 44.52 5.28
2546 2589 2.583441 CCCTTGCGAGAGTGGGACA 61.583 63.158 1.22 0.00 39.42 4.02
2572 2615 6.260271 GGATAAGAAAACTTAAGCGGTGCTAT 59.740 38.462 1.29 0.00 38.25 2.97
2615 2658 3.324108 GGGGGTACGAGTGGCCAA 61.324 66.667 7.24 0.00 0.00 4.52
2821 2888 1.996786 ATGCAATGGTAGCAGCACGC 61.997 55.000 10.60 5.96 46.36 5.34
2839 2906 1.303317 GCCCCAAAGTCGTGACCAT 60.303 57.895 0.00 0.00 0.00 3.55
2869 2937 4.545706 CCCGCTCCGCATAAGCCA 62.546 66.667 0.00 0.00 36.36 4.75
2964 3032 2.078392 GCTCATTGCAACAAATTGGGG 58.922 47.619 0.00 0.00 42.31 4.96
3008 3076 3.475575 TCCAGCAAAAAGGAAAAATGGC 58.524 40.909 0.00 0.00 0.00 4.40
3059 3131 2.677836 GTCACTATGGCAGCAAATTCGA 59.322 45.455 0.00 0.00 0.00 3.71
3080 3152 2.095567 CGCCATCCTCACAAGTTCTTTG 60.096 50.000 0.00 0.00 42.68 2.77
3084 3156 1.079503 GTCGCCATCCTCACAAGTTC 58.920 55.000 0.00 0.00 0.00 3.01
3182 3276 4.090761 TGCTTGTTCTTGAAGATCCACT 57.909 40.909 0.00 0.00 0.00 4.00
3183 3277 4.516698 TCTTGCTTGTTCTTGAAGATCCAC 59.483 41.667 0.00 0.00 0.00 4.02
3184 3278 4.717877 TCTTGCTTGTTCTTGAAGATCCA 58.282 39.130 0.00 0.00 0.00 3.41
3185 3279 5.638783 CATCTTGCTTGTTCTTGAAGATCC 58.361 41.667 0.00 0.00 32.30 3.36
3186 3280 5.094134 GCATCTTGCTTGTTCTTGAAGATC 58.906 41.667 0.00 0.00 40.96 2.75
3187 3281 5.056894 GCATCTTGCTTGTTCTTGAAGAT 57.943 39.130 0.00 0.00 40.96 2.40
3188 3282 4.494350 GCATCTTGCTTGTTCTTGAAGA 57.506 40.909 0.00 0.00 40.96 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.