Multiple sequence alignment - TraesCS3B01G023400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G023400 chr3B 100.000 4359 0 0 1 4359 10045189 10049547 0.000000e+00 8050.0
1 TraesCS3B01G023400 chr3B 84.737 190 27 2 3558 3745 129296227 129296038 5.750000e-44 189.0
2 TraesCS3B01G023400 chr3A 90.355 2509 149 37 1102 3572 12731541 12729088 0.000000e+00 3206.0
3 TraesCS3B01G023400 chr3A 85.828 755 27 25 349 1069 12732320 12731612 0.000000e+00 728.0
4 TraesCS3B01G023400 chr3A 89.503 181 18 1 2 181 515736959 515736779 1.220000e-55 228.0
5 TraesCS3B01G023400 chr3A 97.727 44 1 0 319 362 12732378 12732335 4.670000e-10 76.8
6 TraesCS3B01G023400 chr3D 92.924 2134 128 10 1255 3376 8146469 8148591 0.000000e+00 3083.0
7 TraesCS3B01G023400 chr3D 89.621 1821 145 17 1566 3369 7997947 7999740 0.000000e+00 2276.0
8 TraesCS3B01G023400 chr3D 91.223 695 40 8 2693 3376 8068441 8069125 0.000000e+00 926.0
9 TraesCS3B01G023400 chr3D 85.714 525 24 21 589 1081 7977222 7977727 1.400000e-139 507.0
10 TraesCS3B01G023400 chr3D 90.833 360 29 3 1 360 7717465 7717820 3.050000e-131 479.0
11 TraesCS3B01G023400 chr3D 94.636 261 8 1 358 618 7725136 7725390 2.440000e-107 399.0
12 TraesCS3B01G023400 chr3D 85.970 335 19 8 1102 1426 7977783 7978099 2.510000e-87 333.0
13 TraesCS3B01G023400 chr3D 91.176 204 11 5 3370 3572 8000468 8000665 2.000000e-68 270.0
14 TraesCS3B01G023400 chr3D 93.333 45 3 0 458 502 7977133 7977177 2.810000e-07 67.6
15 TraesCS3B01G023400 chr6D 95.974 770 25 4 3570 4333 381401361 381402130 0.000000e+00 1245.0
16 TraesCS3B01G023400 chr4D 95.596 772 26 6 3570 4333 106656680 106657451 0.000000e+00 1230.0
17 TraesCS3B01G023400 chr4D 95.238 399 17 2 3565 3961 3098681 3098283 7.960000e-177 630.0
18 TraesCS3B01G023400 chr4D 94.906 373 18 1 3591 3962 3190982 3190610 2.260000e-162 582.0
19 TraesCS3B01G023400 chr1D 95.376 757 29 6 3583 4333 42480105 42479349 0.000000e+00 1199.0
20 TraesCS3B01G023400 chr1D 90.055 181 18 0 1 181 398474054 398474234 7.290000e-58 235.0
21 TraesCS3B01G023400 chr1D 100.000 30 0 0 4329 4358 468425274 468425303 6.090000e-04 56.5
22 TraesCS3B01G023400 chr4B 93.974 780 39 5 3562 4333 659967831 659968610 0.000000e+00 1173.0
23 TraesCS3B01G023400 chr4B 86.857 175 22 1 3572 3745 181537378 181537204 1.240000e-45 195.0
24 TraesCS3B01G023400 chr4B 100.000 29 0 0 4330 4358 81992159 81992131 2.000000e-03 54.7
25 TraesCS3B01G023400 chr7B 94.598 759 17 8 3582 4333 612647778 612647037 0.000000e+00 1153.0
26 TraesCS3B01G023400 chr7B 100.000 30 0 0 4330 4359 33631595 33631566 6.090000e-04 56.5
27 TraesCS3B01G023400 chr5D 94.087 761 27 6 3580 4333 76938026 76938775 0.000000e+00 1140.0
28 TraesCS3B01G023400 chr5D 89.503 181 17 2 1 181 535008397 535008575 1.220000e-55 228.0
29 TraesCS3B01G023400 chr5D 88.649 185 21 0 1 185 375170737 375170921 4.390000e-55 226.0
30 TraesCS3B01G023400 chr5D 88.649 185 20 1 1 185 479382863 479382680 1.580000e-54 224.0
31 TraesCS3B01G023400 chr6A 94.932 592 23 4 3749 4333 615971604 615971013 0.000000e+00 920.0
32 TraesCS3B01G023400 chr6A 100.000 29 0 0 4330 4358 89979256 89979228 2.000000e-03 54.7
33 TraesCS3B01G023400 chr2A 77.667 900 169 27 1589 2474 128481493 128480612 1.800000e-143 520.0
34 TraesCS3B01G023400 chr2A 100.000 32 0 0 4327 4358 281676739 281676708 4.710000e-05 60.2
35 TraesCS3B01G023400 chr2A 96.970 33 0 1 4328 4359 343435374 343435342 2.000000e-03 54.7
36 TraesCS3B01G023400 chr2B 74.816 679 144 16 1804 2474 176273200 176272541 9.230000e-72 281.0
37 TraesCS3B01G023400 chr5A 80.051 391 62 6 3570 3956 429992406 429992784 4.290000e-70 276.0
38 TraesCS3B01G023400 chr5A 89.503 181 16 3 1 180 311540324 311540146 4.390000e-55 226.0
39 TraesCS3B01G023400 chr5A 100.000 32 0 0 4327 4358 310179593 310179624 4.710000e-05 60.2
40 TraesCS3B01G023400 chr7D 90.055 181 18 0 1 181 507792539 507792719 7.290000e-58 235.0
41 TraesCS3B01G023400 chr7D 89.503 181 19 0 1 181 572547522 572547702 3.390000e-56 230.0
42 TraesCS3B01G023400 chr6B 96.970 33 0 1 4327 4359 79053970 79053939 2.000000e-03 54.7
43 TraesCS3B01G023400 chr5B 100.000 29 0 0 4330 4358 711950446 711950418 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G023400 chr3B 10045189 10049547 4358 False 8050.000000 8050 100.000000 1 4359 1 chr3B.!!$F1 4358
1 TraesCS3B01G023400 chr3A 12729088 12732378 3290 True 1336.933333 3206 91.303333 319 3572 3 chr3A.!!$R2 3253
2 TraesCS3B01G023400 chr3D 8146469 8148591 2122 False 3083.000000 3083 92.924000 1255 3376 1 chr3D.!!$F4 2121
3 TraesCS3B01G023400 chr3D 7997947 8000665 2718 False 1273.000000 2276 90.398500 1566 3572 2 chr3D.!!$F6 2006
4 TraesCS3B01G023400 chr3D 8068441 8069125 684 False 926.000000 926 91.223000 2693 3376 1 chr3D.!!$F3 683
5 TraesCS3B01G023400 chr3D 7977133 7978099 966 False 302.533333 507 88.339000 458 1426 3 chr3D.!!$F5 968
6 TraesCS3B01G023400 chr6D 381401361 381402130 769 False 1245.000000 1245 95.974000 3570 4333 1 chr6D.!!$F1 763
7 TraesCS3B01G023400 chr4D 106656680 106657451 771 False 1230.000000 1230 95.596000 3570 4333 1 chr4D.!!$F1 763
8 TraesCS3B01G023400 chr1D 42479349 42480105 756 True 1199.000000 1199 95.376000 3583 4333 1 chr1D.!!$R1 750
9 TraesCS3B01G023400 chr4B 659967831 659968610 779 False 1173.000000 1173 93.974000 3562 4333 1 chr4B.!!$F1 771
10 TraesCS3B01G023400 chr7B 612647037 612647778 741 True 1153.000000 1153 94.598000 3582 4333 1 chr7B.!!$R2 751
11 TraesCS3B01G023400 chr5D 76938026 76938775 749 False 1140.000000 1140 94.087000 3580 4333 1 chr5D.!!$F1 753
12 TraesCS3B01G023400 chr6A 615971013 615971604 591 True 920.000000 920 94.932000 3749 4333 1 chr6A.!!$R2 584
13 TraesCS3B01G023400 chr2A 128480612 128481493 881 True 520.000000 520 77.667000 1589 2474 1 chr2A.!!$R1 885
14 TraesCS3B01G023400 chr2B 176272541 176273200 659 True 281.000000 281 74.816000 1804 2474 1 chr2B.!!$R1 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 142 0.037326 GAACCGTGATGAGGTGCAGA 60.037 55.0 0.0 0.0 41.95 4.26 F
142 143 0.615331 AACCGTGATGAGGTGCAGAT 59.385 50.0 0.0 0.0 41.95 2.90 F
1652 1804 0.247736 ACTTGTCCTCCATCGCTCAC 59.752 55.0 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1337 1486 0.042535 TGTCTTCGTTTTCGCTTGCG 60.043 50.000 8.87 8.87 43.73 4.85 R
1685 1837 1.287425 CCGCAAACTCGAGGTATTCC 58.713 55.000 18.41 0.00 0.00 3.01 R
3365 3565 1.136029 AGCACTCTTAACTCGTCGACG 60.136 52.381 31.30 31.30 41.45 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.601981 CGAAGTCATCGTAGGCGC 58.398 61.111 0.00 0.00 46.52 6.53
32 33 1.944676 CGAAGTCATCGTAGGCGCC 60.945 63.158 21.89 21.89 46.52 6.53
33 34 1.437986 GAAGTCATCGTAGGCGCCT 59.562 57.895 34.85 34.85 38.14 5.52
34 35 0.595310 GAAGTCATCGTAGGCGCCTC 60.595 60.000 36.73 23.04 38.14 4.70
35 36 2.337749 AAGTCATCGTAGGCGCCTCG 62.338 60.000 36.73 32.58 38.14 4.63
36 37 2.827190 TCATCGTAGGCGCCTCGT 60.827 61.111 36.73 21.23 38.14 4.18
37 38 2.353607 CATCGTAGGCGCCTCGTC 60.354 66.667 36.73 22.80 38.14 4.20
38 39 3.950254 ATCGTAGGCGCCTCGTCG 61.950 66.667 36.73 32.16 36.23 5.12
40 41 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
41 42 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
46 47 4.907034 CGCCTCGTCGTCGATGGG 62.907 72.222 14.28 11.00 45.21 4.00
47 48 3.515286 GCCTCGTCGTCGATGGGA 61.515 66.667 16.08 4.83 45.21 4.37
48 49 3.060020 GCCTCGTCGTCGATGGGAA 62.060 63.158 16.08 0.00 45.21 3.97
49 50 1.226603 CCTCGTCGTCGATGGGAAC 60.227 63.158 16.08 0.00 45.21 3.62
50 51 1.582937 CTCGTCGTCGATGGGAACG 60.583 63.158 8.75 10.22 45.21 3.95
51 52 2.177531 CGTCGTCGATGGGAACGT 59.822 61.111 6.56 0.00 39.71 3.99
52 53 1.866496 CGTCGTCGATGGGAACGTC 60.866 63.158 6.56 0.00 43.20 4.34
53 54 1.505353 GTCGTCGATGGGAACGTCT 59.495 57.895 4.48 0.00 44.51 4.18
54 55 0.522915 GTCGTCGATGGGAACGTCTC 60.523 60.000 4.48 0.00 44.51 3.36
55 56 1.226603 CGTCGATGGGAACGTCTCC 60.227 63.158 0.00 7.90 44.51 3.71
56 57 1.654954 CGTCGATGGGAACGTCTCCT 61.655 60.000 13.94 0.00 44.68 3.69
57 58 0.100861 GTCGATGGGAACGTCTCCTC 59.899 60.000 13.94 6.42 44.68 3.71
58 59 1.035932 TCGATGGGAACGTCTCCTCC 61.036 60.000 13.94 6.16 44.68 4.30
62 63 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
63 64 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
64 65 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
65 66 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
66 67 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
67 68 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
68 69 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
69 70 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
70 71 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
71 72 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
72 73 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
73 74 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
74 75 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
85 86 3.409856 CGCATCGCCGAAAATCCT 58.590 55.556 0.00 0.00 0.00 3.24
86 87 2.600388 CGCATCGCCGAAAATCCTA 58.400 52.632 0.00 0.00 0.00 2.94
87 88 0.934496 CGCATCGCCGAAAATCCTAA 59.066 50.000 0.00 0.00 0.00 2.69
88 89 1.329292 CGCATCGCCGAAAATCCTAAA 59.671 47.619 0.00 0.00 0.00 1.85
89 90 2.223157 CGCATCGCCGAAAATCCTAAAA 60.223 45.455 0.00 0.00 0.00 1.52
90 91 3.548014 CGCATCGCCGAAAATCCTAAAAT 60.548 43.478 0.00 0.00 0.00 1.82
91 92 4.319190 CGCATCGCCGAAAATCCTAAAATA 60.319 41.667 0.00 0.00 0.00 1.40
92 93 5.516090 GCATCGCCGAAAATCCTAAAATAA 58.484 37.500 0.00 0.00 0.00 1.40
93 94 5.974751 GCATCGCCGAAAATCCTAAAATAAA 59.025 36.000 0.00 0.00 0.00 1.40
94 95 6.640907 GCATCGCCGAAAATCCTAAAATAAAT 59.359 34.615 0.00 0.00 0.00 1.40
95 96 7.806014 GCATCGCCGAAAATCCTAAAATAAATA 59.194 33.333 0.00 0.00 0.00 1.40
96 97 9.840427 CATCGCCGAAAATCCTAAAATAAATAT 57.160 29.630 0.00 0.00 0.00 1.28
99 100 9.769093 CGCCGAAAATCCTAAAATAAATATAGG 57.231 33.333 0.00 0.00 38.02 2.57
116 117 8.627208 AAATATAGGAATAATGTGAGCACCAG 57.373 34.615 0.00 0.00 0.00 4.00
117 118 3.287867 AGGAATAATGTGAGCACCAGG 57.712 47.619 0.00 0.00 0.00 4.45
118 119 2.846206 AGGAATAATGTGAGCACCAGGA 59.154 45.455 0.00 0.00 0.00 3.86
119 120 2.945668 GGAATAATGTGAGCACCAGGAC 59.054 50.000 0.00 0.00 0.00 3.85
120 121 3.370953 GGAATAATGTGAGCACCAGGACT 60.371 47.826 0.00 0.00 0.00 3.85
121 122 4.265073 GAATAATGTGAGCACCAGGACTT 58.735 43.478 0.00 0.00 0.00 3.01
122 123 1.901591 AATGTGAGCACCAGGACTTG 58.098 50.000 0.00 0.00 0.00 3.16
123 124 1.059098 ATGTGAGCACCAGGACTTGA 58.941 50.000 0.00 0.00 0.00 3.02
124 125 0.836606 TGTGAGCACCAGGACTTGAA 59.163 50.000 0.00 0.00 0.00 2.69
125 126 1.230324 GTGAGCACCAGGACTTGAAC 58.770 55.000 0.00 0.00 0.00 3.18
126 127 0.108585 TGAGCACCAGGACTTGAACC 59.891 55.000 0.00 0.00 0.00 3.62
127 128 0.951040 GAGCACCAGGACTTGAACCG 60.951 60.000 0.00 0.00 0.00 4.44
128 129 1.227853 GCACCAGGACTTGAACCGT 60.228 57.895 0.00 0.00 0.00 4.83
129 130 1.507141 GCACCAGGACTTGAACCGTG 61.507 60.000 0.00 0.00 0.00 4.94
130 131 0.105964 CACCAGGACTTGAACCGTGA 59.894 55.000 0.00 0.00 0.00 4.35
131 132 1.056660 ACCAGGACTTGAACCGTGAT 58.943 50.000 0.00 0.00 0.00 3.06
132 133 1.270839 ACCAGGACTTGAACCGTGATG 60.271 52.381 0.00 0.00 0.00 3.07
133 134 1.001974 CCAGGACTTGAACCGTGATGA 59.998 52.381 0.00 0.00 0.00 2.92
134 135 2.341257 CAGGACTTGAACCGTGATGAG 58.659 52.381 0.00 0.00 0.00 2.90
135 136 1.276421 AGGACTTGAACCGTGATGAGG 59.724 52.381 0.00 0.00 0.00 3.86
136 137 1.002087 GGACTTGAACCGTGATGAGGT 59.998 52.381 0.00 0.00 45.29 3.85
137 138 2.069273 GACTTGAACCGTGATGAGGTG 58.931 52.381 0.00 0.00 41.95 4.00
138 139 0.798776 CTTGAACCGTGATGAGGTGC 59.201 55.000 0.00 0.00 41.95 5.01
139 140 0.107643 TTGAACCGTGATGAGGTGCA 59.892 50.000 0.00 0.00 45.22 4.57
140 141 0.320683 TGAACCGTGATGAGGTGCAG 60.321 55.000 0.00 0.00 42.19 4.41
141 142 0.037326 GAACCGTGATGAGGTGCAGA 60.037 55.000 0.00 0.00 41.95 4.26
142 143 0.615331 AACCGTGATGAGGTGCAGAT 59.385 50.000 0.00 0.00 41.95 2.90
143 144 1.485124 ACCGTGATGAGGTGCAGATA 58.515 50.000 0.00 0.00 41.10 1.98
144 145 1.137086 ACCGTGATGAGGTGCAGATAC 59.863 52.381 0.00 0.00 41.10 2.24
145 146 1.539065 CCGTGATGAGGTGCAGATACC 60.539 57.143 0.00 0.00 41.17 2.73
146 147 1.136891 CGTGATGAGGTGCAGATACCA 59.863 52.381 0.00 0.00 43.37 3.25
147 148 2.555199 GTGATGAGGTGCAGATACCAC 58.445 52.381 0.00 0.00 43.37 4.16
148 149 2.169352 GTGATGAGGTGCAGATACCACT 59.831 50.000 0.00 0.00 43.37 4.00
149 150 2.169144 TGATGAGGTGCAGATACCACTG 59.831 50.000 0.00 0.00 43.37 3.66
150 151 1.644509 TGAGGTGCAGATACCACTGT 58.355 50.000 0.00 0.00 43.37 3.55
151 152 1.550524 TGAGGTGCAGATACCACTGTC 59.449 52.381 0.00 0.00 43.37 3.51
152 153 0.905357 AGGTGCAGATACCACTGTCC 59.095 55.000 0.00 0.00 43.37 4.02
153 154 0.905357 GGTGCAGATACCACTGTCCT 59.095 55.000 0.00 0.00 40.54 3.85
154 155 1.279271 GGTGCAGATACCACTGTCCTT 59.721 52.381 0.00 0.00 40.54 3.36
155 156 2.622436 GTGCAGATACCACTGTCCTTC 58.378 52.381 0.00 0.00 39.73 3.46
156 157 2.234908 GTGCAGATACCACTGTCCTTCT 59.765 50.000 0.00 0.00 39.73 2.85
157 158 3.447586 GTGCAGATACCACTGTCCTTCTA 59.552 47.826 0.00 0.00 39.73 2.10
158 159 4.081642 GTGCAGATACCACTGTCCTTCTAA 60.082 45.833 0.00 0.00 39.73 2.10
159 160 4.081642 TGCAGATACCACTGTCCTTCTAAC 60.082 45.833 0.00 0.00 39.73 2.34
160 161 4.680975 GCAGATACCACTGTCCTTCTAACC 60.681 50.000 0.00 0.00 39.73 2.85
161 162 4.466370 CAGATACCACTGTCCTTCTAACCA 59.534 45.833 0.00 0.00 33.73 3.67
162 163 5.129485 CAGATACCACTGTCCTTCTAACCAT 59.871 44.000 0.00 0.00 33.73 3.55
163 164 3.983044 ACCACTGTCCTTCTAACCATC 57.017 47.619 0.00 0.00 0.00 3.51
164 165 2.572104 ACCACTGTCCTTCTAACCATCC 59.428 50.000 0.00 0.00 0.00 3.51
165 166 2.418746 CCACTGTCCTTCTAACCATCCG 60.419 54.545 0.00 0.00 0.00 4.18
166 167 2.496070 CACTGTCCTTCTAACCATCCGA 59.504 50.000 0.00 0.00 0.00 4.55
167 168 2.496470 ACTGTCCTTCTAACCATCCGAC 59.504 50.000 0.00 0.00 0.00 4.79
168 169 2.761208 CTGTCCTTCTAACCATCCGACT 59.239 50.000 0.00 0.00 0.00 4.18
169 170 3.952323 CTGTCCTTCTAACCATCCGACTA 59.048 47.826 0.00 0.00 0.00 2.59
170 171 3.698040 TGTCCTTCTAACCATCCGACTAC 59.302 47.826 0.00 0.00 0.00 2.73
171 172 3.698040 GTCCTTCTAACCATCCGACTACA 59.302 47.826 0.00 0.00 0.00 2.74
172 173 4.159135 GTCCTTCTAACCATCCGACTACAA 59.841 45.833 0.00 0.00 0.00 2.41
173 174 4.401519 TCCTTCTAACCATCCGACTACAAG 59.598 45.833 0.00 0.00 0.00 3.16
174 175 4.159879 CCTTCTAACCATCCGACTACAAGT 59.840 45.833 0.00 0.00 0.00 3.16
175 176 5.337330 CCTTCTAACCATCCGACTACAAGTT 60.337 44.000 0.00 0.00 0.00 2.66
176 177 5.068234 TCTAACCATCCGACTACAAGTTG 57.932 43.478 0.00 0.00 0.00 3.16
183 184 3.380479 CCGACTACAAGTTGGTTCTCA 57.620 47.619 7.96 0.00 43.45 3.27
184 185 3.057734 CCGACTACAAGTTGGTTCTCAC 58.942 50.000 7.96 0.00 43.45 3.51
185 186 3.243771 CCGACTACAAGTTGGTTCTCACT 60.244 47.826 7.96 0.00 43.45 3.41
186 187 4.369182 CGACTACAAGTTGGTTCTCACTT 58.631 43.478 7.96 0.00 0.00 3.16
187 188 4.809426 CGACTACAAGTTGGTTCTCACTTT 59.191 41.667 7.96 0.00 0.00 2.66
188 189 5.293569 CGACTACAAGTTGGTTCTCACTTTT 59.706 40.000 7.96 0.00 0.00 2.27
189 190 6.509677 CGACTACAAGTTGGTTCTCACTTTTC 60.510 42.308 7.96 0.00 0.00 2.29
190 191 6.415573 ACTACAAGTTGGTTCTCACTTTTCT 58.584 36.000 7.96 0.00 0.00 2.52
191 192 7.562135 ACTACAAGTTGGTTCTCACTTTTCTA 58.438 34.615 7.96 0.00 0.00 2.10
192 193 6.679327 ACAAGTTGGTTCTCACTTTTCTAC 57.321 37.500 7.96 0.00 0.00 2.59
193 194 6.415573 ACAAGTTGGTTCTCACTTTTCTACT 58.584 36.000 7.96 0.00 0.00 2.57
194 195 7.562135 ACAAGTTGGTTCTCACTTTTCTACTA 58.438 34.615 7.96 0.00 0.00 1.82
195 196 8.211629 ACAAGTTGGTTCTCACTTTTCTACTAT 58.788 33.333 7.96 0.00 0.00 2.12
196 197 8.499162 CAAGTTGGTTCTCACTTTTCTACTATG 58.501 37.037 0.00 0.00 0.00 2.23
197 198 7.963532 AGTTGGTTCTCACTTTTCTACTATGA 58.036 34.615 0.00 0.00 0.00 2.15
198 199 8.598041 AGTTGGTTCTCACTTTTCTACTATGAT 58.402 33.333 0.00 0.00 0.00 2.45
199 200 8.660373 GTTGGTTCTCACTTTTCTACTATGATG 58.340 37.037 0.00 0.00 0.00 3.07
200 201 8.134202 TGGTTCTCACTTTTCTACTATGATGA 57.866 34.615 0.00 0.00 0.00 2.92
201 202 8.593679 TGGTTCTCACTTTTCTACTATGATGAA 58.406 33.333 0.00 0.00 0.00 2.57
202 203 9.436957 GGTTCTCACTTTTCTACTATGATGAAA 57.563 33.333 0.00 0.00 0.00 2.69
207 208 8.717821 TCACTTTTCTACTATGATGAAAAACCG 58.282 33.333 0.00 0.00 38.61 4.44
208 209 7.962918 CACTTTTCTACTATGATGAAAAACCGG 59.037 37.037 0.00 0.00 38.61 5.28
209 210 6.431198 TTTCTACTATGATGAAAAACCGGC 57.569 37.500 0.00 0.00 0.00 6.13
210 211 5.092554 TCTACTATGATGAAAAACCGGCA 57.907 39.130 0.00 0.00 0.00 5.69
211 212 4.873827 TCTACTATGATGAAAAACCGGCAC 59.126 41.667 0.00 0.00 0.00 5.01
212 213 3.417101 ACTATGATGAAAAACCGGCACA 58.583 40.909 0.00 0.00 0.00 4.57
213 214 3.440173 ACTATGATGAAAAACCGGCACAG 59.560 43.478 0.00 0.00 0.00 3.66
214 215 1.974265 TGATGAAAAACCGGCACAGA 58.026 45.000 0.00 0.00 0.00 3.41
215 216 1.879380 TGATGAAAAACCGGCACAGAG 59.121 47.619 0.00 0.00 0.00 3.35
216 217 2.151202 GATGAAAAACCGGCACAGAGA 58.849 47.619 0.00 0.00 0.00 3.10
217 218 2.270352 TGAAAAACCGGCACAGAGAT 57.730 45.000 0.00 0.00 0.00 2.75
218 219 2.151202 TGAAAAACCGGCACAGAGATC 58.849 47.619 0.00 0.00 0.00 2.75
219 220 2.151202 GAAAAACCGGCACAGAGATCA 58.849 47.619 0.00 0.00 0.00 2.92
220 221 2.496899 AAAACCGGCACAGAGATCAT 57.503 45.000 0.00 0.00 0.00 2.45
221 222 2.496899 AAACCGGCACAGAGATCATT 57.503 45.000 0.00 0.00 0.00 2.57
222 223 2.029838 AACCGGCACAGAGATCATTC 57.970 50.000 0.00 0.00 0.00 2.67
223 224 0.904649 ACCGGCACAGAGATCATTCA 59.095 50.000 0.00 0.00 0.00 2.57
224 225 1.487976 ACCGGCACAGAGATCATTCAT 59.512 47.619 0.00 0.00 0.00 2.57
225 226 2.092753 ACCGGCACAGAGATCATTCATT 60.093 45.455 0.00 0.00 0.00 2.57
226 227 2.947652 CCGGCACAGAGATCATTCATTT 59.052 45.455 0.00 0.00 0.00 2.32
227 228 3.379372 CCGGCACAGAGATCATTCATTTT 59.621 43.478 0.00 0.00 0.00 1.82
228 229 4.142315 CCGGCACAGAGATCATTCATTTTT 60.142 41.667 0.00 0.00 0.00 1.94
229 230 4.796830 CGGCACAGAGATCATTCATTTTTG 59.203 41.667 0.00 0.00 0.00 2.44
230 231 5.620654 CGGCACAGAGATCATTCATTTTTGT 60.621 40.000 0.00 0.00 0.00 2.83
231 232 6.161381 GGCACAGAGATCATTCATTTTTGTT 58.839 36.000 0.00 0.00 0.00 2.83
232 233 6.647895 GGCACAGAGATCATTCATTTTTGTTT 59.352 34.615 0.00 0.00 0.00 2.83
233 234 7.172019 GGCACAGAGATCATTCATTTTTGTTTT 59.828 33.333 0.00 0.00 0.00 2.43
234 235 8.007716 GCACAGAGATCATTCATTTTTGTTTTG 58.992 33.333 0.00 0.00 0.00 2.44
235 236 9.037737 CACAGAGATCATTCATTTTTGTTTTGT 57.962 29.630 0.00 0.00 0.00 2.83
236 237 9.603921 ACAGAGATCATTCATTTTTGTTTTGTT 57.396 25.926 0.00 0.00 0.00 2.83
265 266 9.967346 TGTACTATTAATTGAGTAGTGATGAGC 57.033 33.333 3.83 0.00 31.58 4.26
266 267 9.967346 GTACTATTAATTGAGTAGTGATGAGCA 57.033 33.333 3.83 0.00 31.58 4.26
271 272 4.952262 TTGAGTAGTGATGAGCATTTGC 57.048 40.909 0.00 0.00 42.49 3.68
272 273 3.941573 TGAGTAGTGATGAGCATTTGCA 58.058 40.909 5.20 0.00 45.16 4.08
273 274 3.937079 TGAGTAGTGATGAGCATTTGCAG 59.063 43.478 5.20 0.00 45.16 4.41
274 275 3.937706 GAGTAGTGATGAGCATTTGCAGT 59.062 43.478 5.20 0.00 45.16 4.40
275 276 5.089970 AGTAGTGATGAGCATTTGCAGTA 57.910 39.130 5.20 0.00 45.16 2.74
276 277 4.872691 AGTAGTGATGAGCATTTGCAGTAC 59.127 41.667 5.20 0.00 45.16 2.73
277 278 3.947868 AGTGATGAGCATTTGCAGTACT 58.052 40.909 5.20 0.00 45.16 2.73
278 279 3.937706 AGTGATGAGCATTTGCAGTACTC 59.062 43.478 5.20 0.00 45.16 2.59
279 280 3.064545 GTGATGAGCATTTGCAGTACTCC 59.935 47.826 5.20 0.00 45.16 3.85
280 281 3.054875 TGATGAGCATTTGCAGTACTCCT 60.055 43.478 5.20 0.00 45.16 3.69
281 282 4.162131 TGATGAGCATTTGCAGTACTCCTA 59.838 41.667 5.20 0.00 45.16 2.94
282 283 3.861840 TGAGCATTTGCAGTACTCCTAC 58.138 45.455 5.20 0.00 45.16 3.18
283 284 3.515502 TGAGCATTTGCAGTACTCCTACT 59.484 43.478 5.20 0.00 45.16 2.57
284 285 4.709886 TGAGCATTTGCAGTACTCCTACTA 59.290 41.667 5.20 0.00 45.16 1.82
285 286 5.163509 TGAGCATTTGCAGTACTCCTACTAG 60.164 44.000 5.20 0.00 45.16 2.57
286 287 4.712337 AGCATTTGCAGTACTCCTACTAGT 59.288 41.667 0.00 0.00 45.16 2.57
287 288 5.892119 AGCATTTGCAGTACTCCTACTAGTA 59.108 40.000 5.20 1.89 45.16 1.82
288 289 6.380274 AGCATTTGCAGTACTCCTACTAGTAA 59.620 38.462 3.76 0.00 45.16 2.24
289 290 7.070074 AGCATTTGCAGTACTCCTACTAGTAAT 59.930 37.037 3.76 0.00 45.16 1.89
290 291 7.382759 GCATTTGCAGTACTCCTACTAGTAATC 59.617 40.741 3.76 0.00 41.59 1.75
291 292 7.949690 TTTGCAGTACTCCTACTAGTAATCA 57.050 36.000 3.76 0.00 33.85 2.57
292 293 7.949690 TTGCAGTACTCCTACTAGTAATCAA 57.050 36.000 3.76 0.00 33.85 2.57
293 294 7.949690 TGCAGTACTCCTACTAGTAATCAAA 57.050 36.000 3.76 0.00 33.85 2.69
294 295 8.534954 TGCAGTACTCCTACTAGTAATCAAAT 57.465 34.615 3.76 0.00 33.85 2.32
295 296 8.978472 TGCAGTACTCCTACTAGTAATCAAATT 58.022 33.333 3.76 0.00 33.85 1.82
296 297 9.819267 GCAGTACTCCTACTAGTAATCAAATTT 57.181 33.333 3.76 0.00 33.85 1.82
362 391 4.952460 TCTGCTTCTGTTTACGTTTACCT 58.048 39.130 0.00 0.00 0.00 3.08
380 409 3.818121 TTGTACCGCTGGCGCAACT 62.818 57.895 10.83 0.00 38.24 3.16
390 419 2.750888 GGCGCAACTGAATCGACCC 61.751 63.158 10.83 0.00 0.00 4.46
397 426 4.552767 CGCAACTGAATCGACCCAATTATC 60.553 45.833 0.00 0.00 0.00 1.75
431 460 2.738964 CGAATTTCCCTCGTCTTCCTCC 60.739 54.545 0.00 0.00 0.00 4.30
432 461 1.205055 ATTTCCCTCGTCTTCCTCCC 58.795 55.000 0.00 0.00 0.00 4.30
433 462 1.255667 TTTCCCTCGTCTTCCTCCCG 61.256 60.000 0.00 0.00 0.00 5.14
434 463 2.362632 CCCTCGTCTTCCTCCCGT 60.363 66.667 0.00 0.00 0.00 5.28
435 464 2.711922 CCCTCGTCTTCCTCCCGTG 61.712 68.421 0.00 0.00 0.00 4.94
436 465 1.677966 CCTCGTCTTCCTCCCGTGA 60.678 63.158 0.00 0.00 0.00 4.35
437 466 1.507174 CTCGTCTTCCTCCCGTGAC 59.493 63.158 0.00 0.00 0.00 3.67
438 467 1.228337 TCGTCTTCCTCCCGTGACA 60.228 57.895 0.00 0.00 0.00 3.58
439 468 1.080705 CGTCTTCCTCCCGTGACAC 60.081 63.158 0.00 0.00 0.00 3.67
440 469 1.292541 GTCTTCCTCCCGTGACACC 59.707 63.158 0.00 0.00 0.00 4.16
441 470 1.911766 TCTTCCTCCCGTGACACCC 60.912 63.158 0.00 0.00 0.00 4.61
442 471 2.926242 TTCCTCCCGTGACACCCC 60.926 66.667 0.00 0.00 0.00 4.95
443 472 3.777818 TTCCTCCCGTGACACCCCA 62.778 63.158 0.00 0.00 0.00 4.96
444 473 4.016706 CCTCCCGTGACACCCCAC 62.017 72.222 0.00 0.00 0.00 4.61
445 474 3.238497 CTCCCGTGACACCCCACA 61.238 66.667 0.00 0.00 36.89 4.17
446 475 3.238497 TCCCGTGACACCCCACAG 61.238 66.667 0.00 0.00 36.89 3.66
525 554 4.440829 GCCGGCCAAGAATCCCCA 62.441 66.667 18.11 0.00 0.00 4.96
569 602 0.733729 GGATAGCGTCACTCGTCTGT 59.266 55.000 0.00 0.00 42.13 3.41
573 606 1.511464 GCGTCACTCGTCTGTACCG 60.511 63.158 0.00 0.00 42.13 4.02
574 607 1.511464 CGTCACTCGTCTGTACCGC 60.511 63.158 0.00 0.00 34.52 5.68
575 608 1.511464 GTCACTCGTCTGTACCGCG 60.511 63.158 0.00 0.00 0.00 6.46
576 609 2.874780 CACTCGTCTGTACCGCGC 60.875 66.667 0.00 0.00 0.00 6.86
577 610 3.054503 ACTCGTCTGTACCGCGCT 61.055 61.111 5.56 0.00 0.00 5.92
578 611 2.277373 CTCGTCTGTACCGCGCTC 60.277 66.667 5.56 0.00 0.00 5.03
579 612 2.745100 TCGTCTGTACCGCGCTCT 60.745 61.111 5.56 0.00 0.00 4.09
580 613 2.277373 CGTCTGTACCGCGCTCTC 60.277 66.667 5.56 0.00 0.00 3.20
581 614 2.751913 CGTCTGTACCGCGCTCTCT 61.752 63.158 5.56 0.00 0.00 3.10
582 615 1.062845 GTCTGTACCGCGCTCTCTC 59.937 63.158 5.56 0.00 0.00 3.20
583 616 1.078356 TCTGTACCGCGCTCTCTCT 60.078 57.895 5.56 0.00 0.00 3.10
584 617 1.090625 TCTGTACCGCGCTCTCTCTC 61.091 60.000 5.56 0.00 0.00 3.20
585 618 1.078356 TGTACCGCGCTCTCTCTCT 60.078 57.895 5.56 0.00 0.00 3.10
645 682 3.827898 GAGACCCACCCGAGAGCG 61.828 72.222 0.00 0.00 37.24 5.03
731 791 2.281761 CAAGGAGGGCAAGCACGT 60.282 61.111 0.00 0.00 0.00 4.49
909 976 4.574599 ATCTTCACTTCAACCAACAAGC 57.425 40.909 0.00 0.00 0.00 4.01
1008 1085 1.204231 GTCCTAGTCCCCGTTTCTGTC 59.796 57.143 0.00 0.00 0.00 3.51
1009 1086 1.076677 TCCTAGTCCCCGTTTCTGTCT 59.923 52.381 0.00 0.00 0.00 3.41
1010 1087 1.900486 CCTAGTCCCCGTTTCTGTCTT 59.100 52.381 0.00 0.00 0.00 3.01
1011 1088 2.353803 CCTAGTCCCCGTTTCTGTCTTG 60.354 54.545 0.00 0.00 0.00 3.02
1012 1089 1.129058 AGTCCCCGTTTCTGTCTTGT 58.871 50.000 0.00 0.00 0.00 3.16
1013 1090 1.489230 AGTCCCCGTTTCTGTCTTGTT 59.511 47.619 0.00 0.00 0.00 2.83
1047 1126 4.737177 AGAGCAGCTGCAAGGCCC 62.737 66.667 38.24 19.44 45.16 5.80
1071 1156 2.543238 CGCCCGTCTCAATAAGTAGTCC 60.543 54.545 0.00 0.00 0.00 3.85
1077 1162 6.434652 CCCGTCTCAATAAGTAGTCCATCTAT 59.565 42.308 0.00 0.00 0.00 1.98
1081 1166 9.906660 GTCTCAATAAGTAGTCCATCTATTGAG 57.093 37.037 17.89 17.89 40.13 3.02
1099 1204 8.816894 TCTATTGAGTGAAAAACTACTCCAGAT 58.183 33.333 0.00 0.00 41.99 2.90
1136 1263 1.140252 ACCTGCAACACCGTAAGTTCT 59.860 47.619 0.00 0.00 0.00 3.01
1137 1264 2.218603 CCTGCAACACCGTAAGTTCTT 58.781 47.619 0.00 0.00 0.00 2.52
1138 1265 2.223377 CCTGCAACACCGTAAGTTCTTC 59.777 50.000 0.00 0.00 0.00 2.87
1158 1285 3.697166 TCATACCCCTTTTGCCTTCTTC 58.303 45.455 0.00 0.00 0.00 2.87
1161 1288 2.319844 ACCCCTTTTGCCTTCTTCTTG 58.680 47.619 0.00 0.00 0.00 3.02
1165 1292 4.528206 CCCCTTTTGCCTTCTTCTTGTTAT 59.472 41.667 0.00 0.00 0.00 1.89
1168 1295 7.090808 CCCTTTTGCCTTCTTCTTGTTATTAC 58.909 38.462 0.00 0.00 0.00 1.89
1169 1296 7.039714 CCCTTTTGCCTTCTTCTTGTTATTACT 60.040 37.037 0.00 0.00 0.00 2.24
1170 1297 9.010029 CCTTTTGCCTTCTTCTTGTTATTACTA 57.990 33.333 0.00 0.00 0.00 1.82
1172 1299 9.569122 TTTTGCCTTCTTCTTGTTATTACTAGT 57.431 29.630 0.00 0.00 0.00 2.57
1174 1301 9.871238 TTGCCTTCTTCTTGTTATTACTAGTAG 57.129 33.333 2.23 0.00 0.00 2.57
1175 1302 8.475639 TGCCTTCTTCTTGTTATTACTAGTAGG 58.524 37.037 2.23 0.00 29.88 3.18
1318 1467 4.767478 TCTCTTTTGCAGATCATCAGAGG 58.233 43.478 0.00 0.00 34.40 3.69
1335 1484 6.002653 TCAGAGGTGAAGATAGCACTAGTA 57.997 41.667 0.00 0.00 36.53 1.82
1336 1485 6.058833 TCAGAGGTGAAGATAGCACTAGTAG 58.941 44.000 0.00 0.00 36.53 2.57
1337 1486 4.825085 AGAGGTGAAGATAGCACTAGTAGC 59.175 45.833 0.00 1.88 36.53 3.58
1411 1563 4.965119 AAATCCTCGAATGCCTTTACAC 57.035 40.909 0.00 0.00 0.00 2.90
1475 1627 2.027314 CTCCCGCATCAGCTCTCG 59.973 66.667 0.00 0.00 39.10 4.04
1487 1639 3.193263 TCAGCTCTCGAATCTGCAAATC 58.807 45.455 0.00 0.00 0.00 2.17
1511 1663 2.040278 TGCTGAATACTTTCCAGGCACT 59.960 45.455 0.00 0.00 43.88 4.40
1512 1664 2.680339 GCTGAATACTTTCCAGGCACTC 59.320 50.000 0.00 0.00 34.60 3.51
1534 1686 5.631119 TCTAGTGGATCAGATAATGACCGA 58.369 41.667 0.00 0.00 41.91 4.69
1535 1687 4.592485 AGTGGATCAGATAATGACCGAC 57.408 45.455 0.00 0.00 41.91 4.79
1541 1693 4.913335 TCAGATAATGACCGACTACACC 57.087 45.455 0.00 0.00 31.12 4.16
1544 1696 3.314635 AGATAATGACCGACTACACCGAC 59.685 47.826 0.00 0.00 0.00 4.79
1546 1698 0.957395 ATGACCGACTACACCGACGT 60.957 55.000 0.00 0.00 0.00 4.34
1549 1701 0.957395 ACCGACTACACCGACGTGAT 60.957 55.000 0.00 0.00 43.14 3.06
1553 1705 2.448219 GACTACACCGACGTGATAAGC 58.552 52.381 0.00 0.00 43.14 3.09
1597 1749 1.002773 TGGATGCCATCGGATCATCAG 59.997 52.381 16.80 0.00 38.58 2.90
1652 1804 0.247736 ACTTGTCCTCCATCGCTCAC 59.752 55.000 0.00 0.00 0.00 3.51
1706 1858 0.743345 AATACCTCGAGTTTGCGGCC 60.743 55.000 12.31 0.00 0.00 6.13
1748 1900 4.381079 CCAAGTGAGGCTGAACTAGTACTC 60.381 50.000 0.00 0.46 34.90 2.59
1784 1936 2.205022 TGTCCTTCTTCCATGCTTGG 57.795 50.000 12.41 12.41 45.15 3.61
1987 2139 2.423577 ACTTATCGACTTTGGGTGTGC 58.576 47.619 0.00 0.00 0.00 4.57
2093 2247 4.455606 GCTATGTCCCTCAGCTTGTTAAT 58.544 43.478 0.00 0.00 32.46 1.40
2117 2271 2.607750 TTCGCCTCTCCTGCCCTT 60.608 61.111 0.00 0.00 0.00 3.95
2332 2512 6.350780 GCAGATTTGGATTGAACCTGAAGATT 60.351 38.462 0.00 0.00 0.00 2.40
2475 2655 8.891671 ACTTTTATGTAAGTCCGTTACTTCAA 57.108 30.769 3.87 0.00 45.64 2.69
2485 2665 5.638234 AGTCCGTTACTTCAATTCTTACAGC 59.362 40.000 0.00 0.00 33.35 4.40
2487 2667 6.147328 GTCCGTTACTTCAATTCTTACAGCTT 59.853 38.462 0.00 0.00 0.00 3.74
2555 2737 6.887368 TCCATCAGCAATAAAAATATCGACG 58.113 36.000 0.00 0.00 0.00 5.12
2634 2816 7.815840 TCACATGTTGACCTTTTTGAGATAA 57.184 32.000 0.00 0.00 0.00 1.75
2642 2824 9.543018 GTTGACCTTTTTGAGATAAACGAATAG 57.457 33.333 0.00 0.00 0.00 1.73
2665 2847 4.754114 GGGAGATCTCATGAATTGTACAGC 59.246 45.833 23.85 1.52 0.00 4.40
2686 2868 5.742453 CAGCAATGATGTACAATCTTGCTTC 59.258 40.000 26.51 9.70 44.95 3.86
2733 2925 1.921243 TAATGTCCATGCACGACTCG 58.079 50.000 14.90 0.00 0.00 4.18
2804 2998 6.208402 TCCTCGAAATCATTCATTTGTTCCAA 59.792 34.615 0.00 0.00 34.60 3.53
2837 3032 3.832490 AGGCCATTCCAAAAACTAGTTCC 59.168 43.478 8.95 1.59 37.29 3.62
2849 3044 4.353383 AACTAGTTCCAAAGAGGGTGTC 57.647 45.455 1.12 0.00 38.24 3.67
2850 3045 2.299297 ACTAGTTCCAAAGAGGGTGTCG 59.701 50.000 0.00 0.00 38.24 4.35
2851 3046 1.129058 AGTTCCAAAGAGGGTGTCGT 58.871 50.000 0.00 0.00 38.24 4.34
2862 3057 5.259832 AGAGGGTGTCGTTAGCTTTATAC 57.740 43.478 0.00 0.00 0.00 1.47
2864 3059 3.133542 AGGGTGTCGTTAGCTTTATACCC 59.866 47.826 12.88 12.88 45.35 3.69
2872 3067 6.929606 GTCGTTAGCTTTATACCCATCATTCT 59.070 38.462 0.00 0.00 0.00 2.40
2905 3100 6.182039 TGTATTGACTCTTGTTATTGCTGC 57.818 37.500 0.00 0.00 0.00 5.25
2912 3107 5.551233 ACTCTTGTTATTGCTGCTGTTCTA 58.449 37.500 0.00 0.00 0.00 2.10
3101 3297 3.248602 ACTTGAAGTTGCTCGTGATGAAC 59.751 43.478 0.00 0.00 0.00 3.18
3305 3504 1.265236 GATCCTCCTCATCTGCGGAT 58.735 55.000 0.90 0.90 37.20 4.18
3314 3513 7.014711 TCCTCCTCATCTGCGGATATAATAATC 59.985 40.741 7.96 0.00 0.00 1.75
3365 3565 8.594881 ATGAAGAGACAATAACGATGGATAAC 57.405 34.615 0.00 0.00 0.00 1.89
3389 4316 2.678324 GACGAGTTAAGAGTGCTTGCT 58.322 47.619 0.00 0.00 35.56 3.91
3393 4320 4.627467 ACGAGTTAAGAGTGCTTGCTATTG 59.373 41.667 0.00 0.00 35.56 1.90
3400 4327 3.119602 AGAGTGCTTGCTATTGTGCATTG 60.120 43.478 0.00 0.00 42.96 2.82
3408 4335 1.329171 TATTGTGCATTGGGCCCTGC 61.329 55.000 25.54 25.54 43.89 4.85
3473 4404 8.641541 CCAAGTATATTTTTCTATGTGGGCAAT 58.358 33.333 0.00 0.00 0.00 3.56
3493 4424 6.151691 GCAATTTATGATTCATGCACCGTAT 58.848 36.000 9.46 0.00 34.10 3.06
3494 4425 7.304735 GCAATTTATGATTCATGCACCGTATA 58.695 34.615 9.46 0.00 34.10 1.47
3495 4426 7.271223 GCAATTTATGATTCATGCACCGTATAC 59.729 37.037 9.46 0.00 34.10 1.47
3496 4427 6.460664 TTTATGATTCATGCACCGTATACG 57.539 37.500 18.40 18.40 39.44 3.06
3770 4702 7.013846 AGACTAGGAAAGATAGAGAAATCACCG 59.986 40.741 0.00 0.00 0.00 4.94
4333 5274 3.057596 TCAAAAAGTGCGTCCCATCAATC 60.058 43.478 0.00 0.00 0.00 2.67
4334 5275 2.496899 AAAGTGCGTCCCATCAATCT 57.503 45.000 0.00 0.00 0.00 2.40
4335 5276 2.029838 AAGTGCGTCCCATCAATCTC 57.970 50.000 0.00 0.00 0.00 2.75
4336 5277 1.198713 AGTGCGTCCCATCAATCTCT 58.801 50.000 0.00 0.00 0.00 3.10
4337 5278 2.388735 AGTGCGTCCCATCAATCTCTA 58.611 47.619 0.00 0.00 0.00 2.43
4338 5279 2.101582 AGTGCGTCCCATCAATCTCTAC 59.898 50.000 0.00 0.00 0.00 2.59
4339 5280 2.101582 GTGCGTCCCATCAATCTCTACT 59.898 50.000 0.00 0.00 0.00 2.57
4340 5281 2.766263 TGCGTCCCATCAATCTCTACTT 59.234 45.455 0.00 0.00 0.00 2.24
4341 5282 3.181475 TGCGTCCCATCAATCTCTACTTC 60.181 47.826 0.00 0.00 0.00 3.01
4342 5283 3.068873 GCGTCCCATCAATCTCTACTTCT 59.931 47.826 0.00 0.00 0.00 2.85
4343 5284 4.278669 GCGTCCCATCAATCTCTACTTCTA 59.721 45.833 0.00 0.00 0.00 2.10
4344 5285 5.221263 GCGTCCCATCAATCTCTACTTCTAA 60.221 44.000 0.00 0.00 0.00 2.10
4345 5286 6.517529 GCGTCCCATCAATCTCTACTTCTAAT 60.518 42.308 0.00 0.00 0.00 1.73
4346 5287 6.865726 CGTCCCATCAATCTCTACTTCTAATG 59.134 42.308 0.00 0.00 0.00 1.90
4347 5288 7.158021 GTCCCATCAATCTCTACTTCTAATGG 58.842 42.308 0.00 0.00 0.00 3.16
4348 5289 7.015682 GTCCCATCAATCTCTACTTCTAATGGA 59.984 40.741 0.00 0.00 34.40 3.41
4349 5290 7.234371 TCCCATCAATCTCTACTTCTAATGGAG 59.766 40.741 0.00 0.00 34.40 3.86
4350 5291 6.873076 CCATCAATCTCTACTTCTAATGGAGC 59.127 42.308 0.00 0.00 34.40 4.70
4351 5292 7.440198 CATCAATCTCTACTTCTAATGGAGCA 58.560 38.462 0.00 0.00 0.00 4.26
4352 5293 7.048629 TCAATCTCTACTTCTAATGGAGCAG 57.951 40.000 0.00 0.00 0.00 4.24
4353 5294 6.609212 TCAATCTCTACTTCTAATGGAGCAGT 59.391 38.462 0.00 0.00 0.00 4.40
4354 5295 7.124901 TCAATCTCTACTTCTAATGGAGCAGTT 59.875 37.037 0.00 0.00 0.00 3.16
4355 5296 6.214191 TCTCTACTTCTAATGGAGCAGTTG 57.786 41.667 0.00 0.00 0.00 3.16
4356 5297 5.127845 TCTCTACTTCTAATGGAGCAGTTGG 59.872 44.000 0.00 0.00 0.00 3.77
4357 5298 4.777896 TCTACTTCTAATGGAGCAGTTGGT 59.222 41.667 0.00 0.00 0.00 3.67
4358 5299 3.679389 ACTTCTAATGGAGCAGTTGGTG 58.321 45.455 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.867579 CGATGACTTCGTAAATCTCAAAATG 57.132 36.000 2.72 0.00 43.01 2.32
15 16 0.595310 GAGGCGCCTACGATGACTTC 60.595 60.000 32.97 9.38 43.93 3.01
16 17 1.437986 GAGGCGCCTACGATGACTT 59.562 57.895 32.97 2.04 43.93 3.01
17 18 2.835705 CGAGGCGCCTACGATGACT 61.836 63.158 32.97 3.02 43.93 3.41
18 19 2.353607 CGAGGCGCCTACGATGAC 60.354 66.667 32.97 14.51 43.93 3.06
19 20 2.827190 ACGAGGCGCCTACGATGA 60.827 61.111 37.37 0.00 43.93 2.92
20 21 2.353607 GACGAGGCGCCTACGATG 60.354 66.667 37.37 24.97 43.93 3.84
21 22 3.950254 CGACGAGGCGCCTACGAT 61.950 66.667 37.37 26.68 43.93 3.73
23 24 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
34 35 1.866496 GACGTTCCCATCGACGACG 60.866 63.158 0.00 0.00 41.53 5.12
35 36 0.522915 GAGACGTTCCCATCGACGAC 60.523 60.000 0.00 0.00 41.53 4.34
36 37 1.651240 GGAGACGTTCCCATCGACGA 61.651 60.000 0.00 0.00 41.53 4.20
37 38 1.226603 GGAGACGTTCCCATCGACG 60.227 63.158 0.00 0.00 44.34 5.12
38 39 4.808649 GGAGACGTTCCCATCGAC 57.191 61.111 0.00 0.00 40.37 4.20
46 47 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
47 48 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
48 49 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
49 50 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
50 51 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
51 52 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
52 53 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
53 54 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
54 55 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
55 56 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
56 57 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
57 58 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
68 69 0.934496 TTAGGATTTTCGGCGATGCG 59.066 50.000 11.76 0.00 0.00 4.73
69 70 3.414549 TTTTAGGATTTTCGGCGATGC 57.585 42.857 11.76 0.31 0.00 3.91
70 71 9.840427 ATATTTATTTTAGGATTTTCGGCGATG 57.160 29.630 11.76 0.00 0.00 3.84
73 74 9.769093 CCTATATTTATTTTAGGATTTTCGGCG 57.231 33.333 0.00 0.00 35.50 6.46
90 91 9.725019 CTGGTGCTCACATTATTCCTATATTTA 57.275 33.333 2.21 0.00 0.00 1.40
91 92 7.667219 CCTGGTGCTCACATTATTCCTATATTT 59.333 37.037 2.21 0.00 0.00 1.40
92 93 7.017551 TCCTGGTGCTCACATTATTCCTATATT 59.982 37.037 2.21 0.00 0.00 1.28
93 94 6.501805 TCCTGGTGCTCACATTATTCCTATAT 59.498 38.462 2.21 0.00 0.00 0.86
94 95 5.843969 TCCTGGTGCTCACATTATTCCTATA 59.156 40.000 2.21 0.00 0.00 1.31
95 96 4.660303 TCCTGGTGCTCACATTATTCCTAT 59.340 41.667 2.21 0.00 0.00 2.57
96 97 4.037222 TCCTGGTGCTCACATTATTCCTA 58.963 43.478 2.21 0.00 0.00 2.94
97 98 2.846206 TCCTGGTGCTCACATTATTCCT 59.154 45.455 2.21 0.00 0.00 3.36
98 99 2.945668 GTCCTGGTGCTCACATTATTCC 59.054 50.000 2.21 0.00 0.00 3.01
99 100 3.878778 AGTCCTGGTGCTCACATTATTC 58.121 45.455 2.21 0.00 0.00 1.75
100 101 4.012374 CAAGTCCTGGTGCTCACATTATT 58.988 43.478 2.21 0.00 0.00 1.40
101 102 3.264193 TCAAGTCCTGGTGCTCACATTAT 59.736 43.478 2.21 0.00 0.00 1.28
102 103 2.637382 TCAAGTCCTGGTGCTCACATTA 59.363 45.455 2.21 0.00 0.00 1.90
103 104 1.421268 TCAAGTCCTGGTGCTCACATT 59.579 47.619 2.21 0.00 0.00 2.71
104 105 1.059098 TCAAGTCCTGGTGCTCACAT 58.941 50.000 2.21 0.00 0.00 3.21
105 106 0.836606 TTCAAGTCCTGGTGCTCACA 59.163 50.000 2.21 0.00 0.00 3.58
106 107 1.230324 GTTCAAGTCCTGGTGCTCAC 58.770 55.000 0.00 0.00 0.00 3.51
107 108 0.108585 GGTTCAAGTCCTGGTGCTCA 59.891 55.000 0.00 0.00 0.00 4.26
108 109 0.951040 CGGTTCAAGTCCTGGTGCTC 60.951 60.000 0.00 0.00 0.00 4.26
109 110 1.071471 CGGTTCAAGTCCTGGTGCT 59.929 57.895 0.00 0.00 0.00 4.40
110 111 1.227853 ACGGTTCAAGTCCTGGTGC 60.228 57.895 0.00 0.00 0.00 5.01
111 112 0.105964 TCACGGTTCAAGTCCTGGTG 59.894 55.000 0.00 0.00 0.00 4.17
112 113 1.056660 ATCACGGTTCAAGTCCTGGT 58.943 50.000 0.00 0.00 0.00 4.00
113 114 1.001974 TCATCACGGTTCAAGTCCTGG 59.998 52.381 0.00 0.00 0.00 4.45
114 115 2.341257 CTCATCACGGTTCAAGTCCTG 58.659 52.381 0.00 0.00 0.00 3.86
115 116 1.276421 CCTCATCACGGTTCAAGTCCT 59.724 52.381 0.00 0.00 0.00 3.85
116 117 1.002087 ACCTCATCACGGTTCAAGTCC 59.998 52.381 0.00 0.00 0.00 3.85
117 118 2.069273 CACCTCATCACGGTTCAAGTC 58.931 52.381 0.00 0.00 30.82 3.01
118 119 1.878102 GCACCTCATCACGGTTCAAGT 60.878 52.381 0.00 0.00 30.82 3.16
119 120 0.798776 GCACCTCATCACGGTTCAAG 59.201 55.000 0.00 0.00 30.82 3.02
120 121 0.107643 TGCACCTCATCACGGTTCAA 59.892 50.000 0.00 0.00 30.82 2.69
121 122 0.320683 CTGCACCTCATCACGGTTCA 60.321 55.000 0.00 0.00 30.82 3.18
122 123 0.037326 TCTGCACCTCATCACGGTTC 60.037 55.000 0.00 0.00 30.82 3.62
123 124 0.615331 ATCTGCACCTCATCACGGTT 59.385 50.000 0.00 0.00 30.82 4.44
124 125 1.137086 GTATCTGCACCTCATCACGGT 59.863 52.381 0.00 0.00 34.38 4.83
125 126 1.539065 GGTATCTGCACCTCATCACGG 60.539 57.143 0.00 0.00 35.55 4.94
126 127 1.136891 TGGTATCTGCACCTCATCACG 59.863 52.381 0.00 0.00 39.50 4.35
127 128 2.169352 AGTGGTATCTGCACCTCATCAC 59.831 50.000 0.00 0.00 39.50 3.06
128 129 2.169144 CAGTGGTATCTGCACCTCATCA 59.831 50.000 0.00 0.00 39.50 3.07
129 130 2.169352 ACAGTGGTATCTGCACCTCATC 59.831 50.000 0.00 0.00 39.50 2.92
130 131 2.169352 GACAGTGGTATCTGCACCTCAT 59.831 50.000 0.00 0.00 39.50 2.90
131 132 1.550524 GACAGTGGTATCTGCACCTCA 59.449 52.381 0.00 0.00 39.50 3.86
132 133 1.134670 GGACAGTGGTATCTGCACCTC 60.135 57.143 0.00 0.00 39.50 3.85
133 134 0.905357 GGACAGTGGTATCTGCACCT 59.095 55.000 0.00 0.00 39.50 4.00
134 135 0.905357 AGGACAGTGGTATCTGCACC 59.095 55.000 0.00 0.00 38.84 5.01
135 136 2.234908 AGAAGGACAGTGGTATCTGCAC 59.765 50.000 0.00 0.00 38.84 4.57
136 137 2.540383 AGAAGGACAGTGGTATCTGCA 58.460 47.619 0.00 0.00 38.84 4.41
137 138 4.434520 GTTAGAAGGACAGTGGTATCTGC 58.565 47.826 0.00 0.00 38.84 4.26
138 139 4.466370 TGGTTAGAAGGACAGTGGTATCTG 59.534 45.833 0.00 0.00 40.80 2.90
139 140 4.684724 TGGTTAGAAGGACAGTGGTATCT 58.315 43.478 0.00 0.00 0.00 1.98
140 141 5.453480 GGATGGTTAGAAGGACAGTGGTATC 60.453 48.000 0.00 0.00 0.00 2.24
141 142 4.409247 GGATGGTTAGAAGGACAGTGGTAT 59.591 45.833 0.00 0.00 0.00 2.73
142 143 3.773119 GGATGGTTAGAAGGACAGTGGTA 59.227 47.826 0.00 0.00 0.00 3.25
143 144 2.572104 GGATGGTTAGAAGGACAGTGGT 59.428 50.000 0.00 0.00 0.00 4.16
144 145 2.418746 CGGATGGTTAGAAGGACAGTGG 60.419 54.545 0.00 0.00 0.00 4.00
145 146 2.496070 TCGGATGGTTAGAAGGACAGTG 59.504 50.000 0.00 0.00 0.00 3.66
146 147 2.496470 GTCGGATGGTTAGAAGGACAGT 59.504 50.000 0.00 0.00 0.00 3.55
147 148 2.761208 AGTCGGATGGTTAGAAGGACAG 59.239 50.000 0.00 0.00 0.00 3.51
148 149 2.816411 AGTCGGATGGTTAGAAGGACA 58.184 47.619 0.00 0.00 0.00 4.02
149 150 3.698040 TGTAGTCGGATGGTTAGAAGGAC 59.302 47.826 0.00 0.00 0.00 3.85
150 151 3.972133 TGTAGTCGGATGGTTAGAAGGA 58.028 45.455 0.00 0.00 0.00 3.36
151 152 4.159879 ACTTGTAGTCGGATGGTTAGAAGG 59.840 45.833 0.00 0.00 0.00 3.46
152 153 5.326200 ACTTGTAGTCGGATGGTTAGAAG 57.674 43.478 0.00 0.00 0.00 2.85
153 154 5.475719 CAACTTGTAGTCGGATGGTTAGAA 58.524 41.667 0.00 0.00 0.00 2.10
154 155 4.081862 CCAACTTGTAGTCGGATGGTTAGA 60.082 45.833 0.00 0.00 0.00 2.10
155 156 4.181578 CCAACTTGTAGTCGGATGGTTAG 58.818 47.826 0.00 0.00 0.00 2.34
156 157 3.579586 ACCAACTTGTAGTCGGATGGTTA 59.420 43.478 0.00 0.00 36.32 2.85
157 158 2.370849 ACCAACTTGTAGTCGGATGGTT 59.629 45.455 0.00 0.00 36.32 3.67
158 159 1.975680 ACCAACTTGTAGTCGGATGGT 59.024 47.619 0.00 0.00 34.98 3.55
159 160 2.762535 ACCAACTTGTAGTCGGATGG 57.237 50.000 0.00 0.00 0.00 3.51
160 161 3.926616 AGAACCAACTTGTAGTCGGATG 58.073 45.455 0.00 0.00 0.00 3.51
161 162 3.576982 TGAGAACCAACTTGTAGTCGGAT 59.423 43.478 0.00 0.00 0.00 4.18
162 163 2.960384 TGAGAACCAACTTGTAGTCGGA 59.040 45.455 0.00 0.00 0.00 4.55
163 164 3.057734 GTGAGAACCAACTTGTAGTCGG 58.942 50.000 0.00 0.00 0.00 4.79
164 165 3.978687 AGTGAGAACCAACTTGTAGTCG 58.021 45.455 0.00 0.00 0.00 4.18
165 166 6.539103 AGAAAAGTGAGAACCAACTTGTAGTC 59.461 38.462 0.00 0.00 0.00 2.59
166 167 6.415573 AGAAAAGTGAGAACCAACTTGTAGT 58.584 36.000 0.00 0.00 0.00 2.73
167 168 6.927294 AGAAAAGTGAGAACCAACTTGTAG 57.073 37.500 0.00 0.00 0.00 2.74
168 169 7.562135 AGTAGAAAAGTGAGAACCAACTTGTA 58.438 34.615 0.00 0.00 0.00 2.41
169 170 6.415573 AGTAGAAAAGTGAGAACCAACTTGT 58.584 36.000 0.00 0.00 0.00 3.16
170 171 6.927294 AGTAGAAAAGTGAGAACCAACTTG 57.073 37.500 0.00 0.00 0.00 3.16
171 172 8.429641 TCATAGTAGAAAAGTGAGAACCAACTT 58.570 33.333 0.00 0.00 0.00 2.66
172 173 7.963532 TCATAGTAGAAAAGTGAGAACCAACT 58.036 34.615 0.00 0.00 0.00 3.16
173 174 8.660373 CATCATAGTAGAAAAGTGAGAACCAAC 58.340 37.037 0.00 0.00 0.00 3.77
174 175 8.593679 TCATCATAGTAGAAAAGTGAGAACCAA 58.406 33.333 0.00 0.00 0.00 3.67
175 176 8.134202 TCATCATAGTAGAAAAGTGAGAACCA 57.866 34.615 0.00 0.00 0.00 3.67
176 177 9.436957 TTTCATCATAGTAGAAAAGTGAGAACC 57.563 33.333 0.00 0.00 0.00 3.62
181 182 8.717821 CGGTTTTTCATCATAGTAGAAAAGTGA 58.282 33.333 0.00 0.00 40.87 3.41
182 183 7.962918 CCGGTTTTTCATCATAGTAGAAAAGTG 59.037 37.037 0.00 0.00 40.87 3.16
183 184 7.361799 GCCGGTTTTTCATCATAGTAGAAAAGT 60.362 37.037 1.90 0.00 40.87 2.66
184 185 6.967199 GCCGGTTTTTCATCATAGTAGAAAAG 59.033 38.462 1.90 0.00 40.87 2.27
185 186 6.431543 TGCCGGTTTTTCATCATAGTAGAAAA 59.568 34.615 1.90 0.00 38.90 2.29
186 187 5.941058 TGCCGGTTTTTCATCATAGTAGAAA 59.059 36.000 1.90 0.00 0.00 2.52
187 188 5.353123 GTGCCGGTTTTTCATCATAGTAGAA 59.647 40.000 1.90 0.00 0.00 2.10
188 189 4.873827 GTGCCGGTTTTTCATCATAGTAGA 59.126 41.667 1.90 0.00 0.00 2.59
189 190 4.634004 TGTGCCGGTTTTTCATCATAGTAG 59.366 41.667 1.90 0.00 0.00 2.57
190 191 4.580868 TGTGCCGGTTTTTCATCATAGTA 58.419 39.130 1.90 0.00 0.00 1.82
191 192 3.417101 TGTGCCGGTTTTTCATCATAGT 58.583 40.909 1.90 0.00 0.00 2.12
192 193 3.689161 TCTGTGCCGGTTTTTCATCATAG 59.311 43.478 1.90 0.00 0.00 2.23
193 194 3.680490 TCTGTGCCGGTTTTTCATCATA 58.320 40.909 1.90 0.00 0.00 2.15
194 195 2.489329 CTCTGTGCCGGTTTTTCATCAT 59.511 45.455 1.90 0.00 0.00 2.45
195 196 1.879380 CTCTGTGCCGGTTTTTCATCA 59.121 47.619 1.90 0.00 0.00 3.07
196 197 2.151202 TCTCTGTGCCGGTTTTTCATC 58.849 47.619 1.90 0.00 0.00 2.92
197 198 2.270352 TCTCTGTGCCGGTTTTTCAT 57.730 45.000 1.90 0.00 0.00 2.57
198 199 2.151202 GATCTCTGTGCCGGTTTTTCA 58.849 47.619 1.90 0.00 0.00 2.69
199 200 2.151202 TGATCTCTGTGCCGGTTTTTC 58.849 47.619 1.90 0.00 0.00 2.29
200 201 2.270352 TGATCTCTGTGCCGGTTTTT 57.730 45.000 1.90 0.00 0.00 1.94
201 202 2.496899 ATGATCTCTGTGCCGGTTTT 57.503 45.000 1.90 0.00 0.00 2.43
202 203 2.290260 TGAATGATCTCTGTGCCGGTTT 60.290 45.455 1.90 0.00 0.00 3.27
203 204 1.278985 TGAATGATCTCTGTGCCGGTT 59.721 47.619 1.90 0.00 0.00 4.44
204 205 0.904649 TGAATGATCTCTGTGCCGGT 59.095 50.000 1.90 0.00 0.00 5.28
205 206 2.251409 ATGAATGATCTCTGTGCCGG 57.749 50.000 0.00 0.00 0.00 6.13
206 207 4.627611 AAAATGAATGATCTCTGTGCCG 57.372 40.909 0.00 0.00 0.00 5.69
207 208 5.717119 ACAAAAATGAATGATCTCTGTGCC 58.283 37.500 0.00 0.00 0.00 5.01
208 209 7.647907 AAACAAAAATGAATGATCTCTGTGC 57.352 32.000 0.00 0.00 0.00 4.57
209 210 9.037737 ACAAAACAAAAATGAATGATCTCTGTG 57.962 29.630 0.00 0.00 0.00 3.66
210 211 9.603921 AACAAAACAAAAATGAATGATCTCTGT 57.396 25.926 0.00 0.00 0.00 3.41
239 240 9.967346 GCTCATCACTACTCAATTAATAGTACA 57.033 33.333 0.00 0.00 0.00 2.90
240 241 9.967346 TGCTCATCACTACTCAATTAATAGTAC 57.033 33.333 0.00 0.00 0.00 2.73
245 246 8.133627 GCAAATGCTCATCACTACTCAATTAAT 58.866 33.333 0.00 0.00 38.21 1.40
246 247 7.121020 TGCAAATGCTCATCACTACTCAATTAA 59.879 33.333 6.97 0.00 42.66 1.40
247 248 6.598850 TGCAAATGCTCATCACTACTCAATTA 59.401 34.615 6.97 0.00 42.66 1.40
248 249 5.416639 TGCAAATGCTCATCACTACTCAATT 59.583 36.000 6.97 0.00 42.66 2.32
249 250 4.945543 TGCAAATGCTCATCACTACTCAAT 59.054 37.500 6.97 0.00 42.66 2.57
250 251 4.325972 TGCAAATGCTCATCACTACTCAA 58.674 39.130 6.97 0.00 42.66 3.02
251 252 3.937079 CTGCAAATGCTCATCACTACTCA 59.063 43.478 6.97 0.00 42.66 3.41
252 253 3.937706 ACTGCAAATGCTCATCACTACTC 59.062 43.478 6.97 0.00 42.66 2.59
253 254 3.947868 ACTGCAAATGCTCATCACTACT 58.052 40.909 6.97 0.00 42.66 2.57
254 255 4.872691 AGTACTGCAAATGCTCATCACTAC 59.127 41.667 6.97 0.00 42.66 2.73
255 256 5.089970 AGTACTGCAAATGCTCATCACTA 57.910 39.130 6.97 0.00 42.66 2.74
256 257 3.937706 GAGTACTGCAAATGCTCATCACT 59.062 43.478 0.00 3.25 42.66 3.41
257 258 3.064545 GGAGTACTGCAAATGCTCATCAC 59.935 47.826 9.84 0.00 42.66 3.06
258 259 3.054875 AGGAGTACTGCAAATGCTCATCA 60.055 43.478 17.34 0.00 42.66 3.07
259 260 3.539604 AGGAGTACTGCAAATGCTCATC 58.460 45.455 17.34 2.44 42.66 2.92
260 261 3.641434 AGGAGTACTGCAAATGCTCAT 57.359 42.857 17.34 7.37 42.66 2.90
261 262 3.515502 AGTAGGAGTACTGCAAATGCTCA 59.484 43.478 17.34 0.00 38.14 4.26
262 263 4.130286 AGTAGGAGTACTGCAAATGCTC 57.870 45.455 17.34 7.07 38.14 4.26
263 264 4.712337 ACTAGTAGGAGTACTGCAAATGCT 59.288 41.667 17.34 7.47 39.96 3.79
264 265 5.012328 ACTAGTAGGAGTACTGCAAATGC 57.988 43.478 17.34 0.00 39.96 3.56
265 266 8.414003 TGATTACTAGTAGGAGTACTGCAAATG 58.586 37.037 17.34 5.20 39.96 2.32
266 267 8.534954 TGATTACTAGTAGGAGTACTGCAAAT 57.465 34.615 17.34 3.98 39.96 2.32
267 268 7.949690 TGATTACTAGTAGGAGTACTGCAAA 57.050 36.000 17.34 1.06 39.96 3.68
268 269 7.949690 TTGATTACTAGTAGGAGTACTGCAA 57.050 36.000 17.34 0.31 39.96 4.08
269 270 7.949690 TTTGATTACTAGTAGGAGTACTGCA 57.050 36.000 17.34 0.00 39.96 4.41
270 271 9.819267 AAATTTGATTACTAGTAGGAGTACTGC 57.181 33.333 6.22 6.22 39.96 4.40
309 310 9.978044 GAGGGAGTAGTAATTAATTACACGAAT 57.022 33.333 30.54 18.80 43.83 3.34
310 311 8.970020 TGAGGGAGTAGTAATTAATTACACGAA 58.030 33.333 30.54 15.80 43.83 3.85
311 312 8.523915 TGAGGGAGTAGTAATTAATTACACGA 57.476 34.615 30.54 17.63 43.83 4.35
312 313 9.760077 AATGAGGGAGTAGTAATTAATTACACG 57.240 33.333 30.54 0.00 43.83 4.49
380 409 3.390135 GCGAGATAATTGGGTCGATTCA 58.610 45.455 8.75 0.00 34.28 2.57
390 419 2.802816 CGGGAGAAAGGCGAGATAATTG 59.197 50.000 0.00 0.00 0.00 2.32
433 462 4.660938 GGGGCTGTGGGGTGTCAC 62.661 72.222 0.00 0.00 38.09 3.67
452 481 2.032681 ACTCTGTTTCTGGCCGCC 59.967 61.111 1.04 1.04 0.00 6.13
456 485 2.035442 GGGCGACTCTGTTTCTGGC 61.035 63.158 0.00 0.00 0.00 4.85
488 517 1.881925 CGGCTCACCTGAATTTGGACA 60.882 52.381 5.58 0.00 0.00 4.02
516 545 0.251608 CGGGGTGTTTTGGGGATTCT 60.252 55.000 0.00 0.00 0.00 2.40
525 554 1.338389 CCAGTCGATACGGGGTGTTTT 60.338 52.381 0.00 0.00 37.31 2.43
569 602 0.531090 GAGAGAGAGAGAGCGCGGTA 60.531 60.000 12.41 0.00 0.00 4.02
573 606 1.202580 AGAGAGAGAGAGAGAGAGCGC 60.203 57.143 0.00 0.00 0.00 5.92
574 607 2.363680 AGAGAGAGAGAGAGAGAGAGCG 59.636 54.545 0.00 0.00 0.00 5.03
575 608 3.244044 GGAGAGAGAGAGAGAGAGAGAGC 60.244 56.522 0.00 0.00 0.00 4.09
576 609 4.222336 AGGAGAGAGAGAGAGAGAGAGAG 58.778 52.174 0.00 0.00 0.00 3.20
577 610 4.219115 GAGGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
578 611 3.323403 GGAGGAGAGAGAGAGAGAGAGAG 59.677 56.522 0.00 0.00 0.00 3.20
579 612 3.309296 GGAGGAGAGAGAGAGAGAGAGA 58.691 54.545 0.00 0.00 0.00 3.10
580 613 2.036475 CGGAGGAGAGAGAGAGAGAGAG 59.964 59.091 0.00 0.00 0.00 3.20
581 614 2.039418 CGGAGGAGAGAGAGAGAGAGA 58.961 57.143 0.00 0.00 0.00 3.10
582 615 1.541233 GCGGAGGAGAGAGAGAGAGAG 60.541 61.905 0.00 0.00 0.00 3.20
583 616 0.468226 GCGGAGGAGAGAGAGAGAGA 59.532 60.000 0.00 0.00 0.00 3.10
584 617 0.469917 AGCGGAGGAGAGAGAGAGAG 59.530 60.000 0.00 0.00 0.00 3.20
585 618 0.468226 GAGCGGAGGAGAGAGAGAGA 59.532 60.000 0.00 0.00 0.00 3.10
693 730 1.331214 TTGAAAGAAAGCCAGCCAGG 58.669 50.000 0.00 0.00 41.84 4.45
695 732 2.106566 TGTTTGAAAGAAAGCCAGCCA 58.893 42.857 0.00 0.00 0.00 4.75
696 733 2.888834 TGTTTGAAAGAAAGCCAGCC 57.111 45.000 0.00 0.00 0.00 4.85
697 734 3.126073 CCTTGTTTGAAAGAAAGCCAGC 58.874 45.455 0.00 0.00 0.00 4.85
698 735 4.500375 CCTCCTTGTTTGAAAGAAAGCCAG 60.500 45.833 0.00 0.00 0.00 4.85
700 737 3.243873 CCCTCCTTGTTTGAAAGAAAGCC 60.244 47.826 0.00 0.00 0.00 4.35
701 738 3.800261 GCCCTCCTTGTTTGAAAGAAAGC 60.800 47.826 0.00 0.00 0.00 3.51
702 739 3.384467 TGCCCTCCTTGTTTGAAAGAAAG 59.616 43.478 0.00 0.00 0.00 2.62
703 740 3.370104 TGCCCTCCTTGTTTGAAAGAAA 58.630 40.909 0.00 0.00 0.00 2.52
704 741 3.025322 TGCCCTCCTTGTTTGAAAGAA 57.975 42.857 0.00 0.00 0.00 2.52
743 803 4.660938 AACAGGGGAAGGTGGCGC 62.661 66.667 0.00 0.00 0.00 6.53
744 804 2.359975 GAACAGGGGAAGGTGGCG 60.360 66.667 0.00 0.00 0.00 5.69
745 805 2.035783 GGAACAGGGGAAGGTGGC 59.964 66.667 0.00 0.00 0.00 5.01
746 806 2.763902 GGGAACAGGGGAAGGTGG 59.236 66.667 0.00 0.00 0.00 4.61
890 957 2.223805 GGGCTTGTTGGTTGAAGTGAAG 60.224 50.000 0.00 0.00 0.00 3.02
891 958 1.754226 GGGCTTGTTGGTTGAAGTGAA 59.246 47.619 0.00 0.00 0.00 3.18
892 959 1.398692 GGGCTTGTTGGTTGAAGTGA 58.601 50.000 0.00 0.00 0.00 3.41
893 960 0.030638 CGGGCTTGTTGGTTGAAGTG 59.969 55.000 0.00 0.00 0.00 3.16
894 961 1.106944 CCGGGCTTGTTGGTTGAAGT 61.107 55.000 0.00 0.00 0.00 3.01
1047 1126 2.202824 TTATTGAGACGGGCGGCG 60.203 61.111 0.51 0.51 0.00 6.46
1054 1133 8.568794 TCAATAGATGGACTACTTATTGAGACG 58.431 37.037 2.15 0.00 33.62 4.18
1071 1156 8.777865 TGGAGTAGTTTTTCACTCAATAGATG 57.222 34.615 4.32 0.00 42.45 2.90
1077 1162 6.874134 GCTATCTGGAGTAGTTTTTCACTCAA 59.126 38.462 4.32 0.00 42.45 3.02
1081 1166 4.567159 CGGCTATCTGGAGTAGTTTTTCAC 59.433 45.833 0.00 0.00 0.00 3.18
1086 1191 1.413077 GGCGGCTATCTGGAGTAGTTT 59.587 52.381 0.00 0.00 0.00 2.66
1099 1204 1.220749 GTTGACTCCATGGCGGCTA 59.779 57.895 9.47 0.00 33.14 3.93
1136 1263 3.825908 AGAAGGCAAAAGGGGTATGAA 57.174 42.857 0.00 0.00 0.00 2.57
1137 1264 3.333680 AGAAGAAGGCAAAAGGGGTATGA 59.666 43.478 0.00 0.00 0.00 2.15
1138 1265 3.701664 AGAAGAAGGCAAAAGGGGTATG 58.298 45.455 0.00 0.00 0.00 2.39
1168 1295 6.433716 GCCTACCTTAGTTGATACCCTACTAG 59.566 46.154 0.00 0.00 35.23 2.57
1169 1296 6.310149 GCCTACCTTAGTTGATACCCTACTA 58.690 44.000 0.00 0.00 33.12 1.82
1170 1297 5.146298 GCCTACCTTAGTTGATACCCTACT 58.854 45.833 0.00 0.00 35.17 2.57
1171 1298 4.282957 GGCCTACCTTAGTTGATACCCTAC 59.717 50.000 0.00 0.00 0.00 3.18
1172 1299 4.486839 GGCCTACCTTAGTTGATACCCTA 58.513 47.826 0.00 0.00 0.00 3.53
1173 1300 3.315596 GGCCTACCTTAGTTGATACCCT 58.684 50.000 0.00 0.00 0.00 4.34
1174 1301 3.766068 GGCCTACCTTAGTTGATACCC 57.234 52.381 0.00 0.00 0.00 3.69
1187 1314 7.724951 TCTCTAGTAAAGATTAGAAGGCCTACC 59.275 40.741 5.16 0.14 32.41 3.18
1335 1484 1.082756 CTTCGTTTTCGCTTGCGCT 60.083 52.632 9.73 0.00 43.73 5.92
1336 1485 1.083015 TCTTCGTTTTCGCTTGCGC 60.083 52.632 10.38 0.00 43.73 6.09
1337 1486 0.042535 TGTCTTCGTTTTCGCTTGCG 60.043 50.000 8.87 8.87 43.73 4.85
1475 1627 7.201145 AGTATTCAGCATTGATTTGCAGATTC 58.799 34.615 0.00 0.00 45.23 2.52
1487 1639 3.444742 TGCCTGGAAAGTATTCAGCATTG 59.555 43.478 0.00 0.00 37.29 2.82
1497 1649 2.832129 CCACTAGAGTGCCTGGAAAGTA 59.168 50.000 4.03 0.00 44.34 2.24
1511 1663 5.473846 GTCGGTCATTATCTGATCCACTAGA 59.526 44.000 0.00 0.00 35.97 2.43
1512 1664 5.475220 AGTCGGTCATTATCTGATCCACTAG 59.525 44.000 0.00 0.00 35.97 2.57
1534 1686 1.814394 TGCTTATCACGTCGGTGTAGT 59.186 47.619 0.00 0.00 44.68 2.73
1535 1687 2.096980 TCTGCTTATCACGTCGGTGTAG 59.903 50.000 0.00 0.00 44.68 2.74
1541 1693 6.146216 AGATAGAAATCTGCTTATCACGTCG 58.854 40.000 0.00 0.00 41.08 5.12
1544 1696 5.570973 CGGAGATAGAAATCTGCTTATCACG 59.429 44.000 5.53 0.00 45.67 4.35
1546 1698 5.473931 GCGGAGATAGAAATCTGCTTATCA 58.526 41.667 5.53 0.00 45.67 2.15
1549 1701 3.305403 CGGCGGAGATAGAAATCTGCTTA 60.305 47.826 0.00 0.00 45.67 3.09
1553 1705 1.423395 GCGGCGGAGATAGAAATCTG 58.577 55.000 9.78 0.00 42.73 2.90
1685 1837 1.287425 CCGCAAACTCGAGGTATTCC 58.713 55.000 18.41 0.00 0.00 3.01
1706 1858 2.182284 CATGCAACATGGCCGGTG 59.818 61.111 1.90 1.64 0.00 4.94
1748 1900 4.315803 AGGACATAAACCGTTGTCTGAAG 58.684 43.478 3.39 0.00 41.55 3.02
1784 1936 1.527433 GCAAACTGAAGGGACCAGGC 61.527 60.000 0.00 0.00 36.03 4.85
1987 2139 4.154918 GGGCAGAGATTAGTTCAACTTGTG 59.845 45.833 0.00 0.00 0.00 3.33
2093 2247 2.102588 GGCAGGAGAGGCGAAGTATAAA 59.897 50.000 0.00 0.00 0.00 1.40
2117 2271 1.680735 GTGAATGGTGTGTGCCAAGAA 59.319 47.619 0.00 0.00 42.48 2.52
2126 2280 1.805943 TCGCTCAATGTGAATGGTGTG 59.194 47.619 0.00 0.00 31.45 3.82
2290 2470 2.029020 TCTGCAGCAGAACGAAGTACAT 60.029 45.455 23.41 0.00 45.00 2.29
2292 2472 2.065993 TCTGCAGCAGAACGAAGTAC 57.934 50.000 23.41 0.00 45.00 2.73
2332 2512 2.719531 ATAGGAGTGAGCTGTCGAGA 57.280 50.000 0.00 0.00 0.00 4.04
2475 2655 5.700402 AGATGTGGGTAAGCTGTAAGAAT 57.300 39.130 0.00 0.00 34.07 2.40
2481 2661 2.496899 CCAAGATGTGGGTAAGCTGT 57.503 50.000 0.00 0.00 44.64 4.40
2597 2779 3.815856 ACATGTGACAGGATAGAGCTG 57.184 47.619 3.52 0.00 0.00 4.24
2599 2781 4.128925 TCAACATGTGACAGGATAGAGC 57.871 45.455 3.52 0.00 0.00 4.09
2633 2815 6.485830 TTCATGAGATCTCCCTATTCGTTT 57.514 37.500 20.03 0.00 0.00 3.60
2634 2816 6.678568 ATTCATGAGATCTCCCTATTCGTT 57.321 37.500 20.03 0.00 0.00 3.85
2642 2824 4.754114 GCTGTACAATTCATGAGATCTCCC 59.246 45.833 20.03 0.00 0.00 4.30
2665 2847 6.110543 TCGAAGCAAGATTGTACATCATTG 57.889 37.500 0.00 3.34 0.00 2.82
2733 2925 6.582636 TCCAACATGAGATTATACCTCACAC 58.417 40.000 0.00 0.00 42.68 3.82
2804 2998 5.582950 TTGGAATGGCCTATATAGCTGTT 57.417 39.130 3.32 0.00 37.63 3.16
2837 3032 2.457366 AGCTAACGACACCCTCTTTG 57.543 50.000 0.00 0.00 0.00 2.77
2849 3044 7.730364 AAGAATGATGGGTATAAAGCTAACG 57.270 36.000 0.00 0.00 0.00 3.18
2862 3057 8.355169 CAATACATCCAAGTAAAGAATGATGGG 58.645 37.037 0.00 0.00 0.00 4.00
2864 3059 9.941664 GTCAATACATCCAAGTAAAGAATGATG 57.058 33.333 0.00 0.00 0.00 3.07
2872 3067 8.918202 AACAAGAGTCAATACATCCAAGTAAA 57.082 30.769 0.00 0.00 0.00 2.01
2942 3137 8.885494 AAACAGCACATTACATTAAATGTTGT 57.115 26.923 0.00 1.38 45.54 3.32
3101 3297 3.751698 CCTTGTCTTCCTCCTTAAAACCG 59.248 47.826 0.00 0.00 0.00 4.44
3214 3413 3.947612 ATCTTGGAGGCTCATGATTGT 57.052 42.857 17.69 0.00 30.47 2.71
3365 3565 1.136029 AGCACTCTTAACTCGTCGACG 60.136 52.381 31.30 31.30 41.45 5.12
3369 3569 2.678324 AGCAAGCACTCTTAACTCGTC 58.322 47.619 0.00 0.00 0.00 4.20
3371 3571 4.627467 ACAATAGCAAGCACTCTTAACTCG 59.373 41.667 0.00 0.00 0.00 4.18
3473 4404 5.986741 ACGTATACGGTGCATGAATCATAAA 59.013 36.000 27.62 0.00 44.95 1.40
3494 4425 8.603181 ACTTCAAAGTAAAACATAAACGTACGT 58.397 29.630 16.72 16.72 37.52 3.57
3495 4426 8.976715 ACTTCAAAGTAAAACATAAACGTACG 57.023 30.769 15.01 15.01 37.52 3.67
3504 4435 7.867403 CACATAGCCAACTTCAAAGTAAAACAT 59.133 33.333 0.00 0.00 38.57 2.71
3622 4554 5.122239 CACACATCTCAATGTAATCCAACGT 59.878 40.000 0.00 0.00 44.41 3.99
3770 4702 5.519722 CATGGCCTTAATGAACCGTTAATC 58.480 41.667 3.32 0.00 0.00 1.75
3780 4712 2.076207 AGCATGCATGGCCTTAATGA 57.924 45.000 27.34 0.00 0.00 2.57
3857 4790 6.844696 ACTGTATATATGGCTTCGTGTTTG 57.155 37.500 0.00 0.00 0.00 2.93
4333 5274 5.105146 ACCAACTGCTCCATTAGAAGTAGAG 60.105 44.000 0.00 0.00 44.09 2.43
4334 5275 4.777896 ACCAACTGCTCCATTAGAAGTAGA 59.222 41.667 0.00 0.00 44.09 2.59
4335 5276 4.872691 CACCAACTGCTCCATTAGAAGTAG 59.127 45.833 0.00 0.00 44.09 2.57
4336 5277 4.832248 CACCAACTGCTCCATTAGAAGTA 58.168 43.478 0.00 0.00 44.09 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.