Multiple sequence alignment - TraesCS3B01G023200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G023200 chr3B 100.000 9428 0 0 1 9428 9940291 9930864 0.000000e+00 17411.0
1 TraesCS3B01G023200 chr3B 84.232 482 52 17 8952 9426 10013959 10014423 1.870000e-121 448.0
2 TraesCS3B01G023200 chr3B 87.308 260 28 4 9154 9411 9923271 9923015 9.260000e-75 292.0
3 TraesCS3B01G023200 chr3B 93.651 63 2 2 8456 8516 694097229 694097167 1.010000e-14 93.5
4 TraesCS3B01G023200 chr3B 78.125 128 22 6 106 230 275948705 275948581 1.020000e-09 76.8
5 TraesCS3B01G023200 chr3B 86.154 65 8 1 3829 3893 132527281 132527344 1.700000e-07 69.4
6 TraesCS3B01G023200 chr3B 89.286 56 5 1 3830 3885 187335665 187335719 1.700000e-07 69.4
7 TraesCS3B01G023200 chr3D 97.654 2941 55 6 3899 6828 7610516 7607579 0.000000e+00 5036.0
8 TraesCS3B01G023200 chr3D 95.724 1567 49 9 6874 8432 7607395 7605839 0.000000e+00 2507.0
9 TraesCS3B01G023200 chr3D 92.926 1654 83 15 712 2359 7614157 7612532 0.000000e+00 2375.0
10 TraesCS3B01G023200 chr3D 94.132 1244 53 6 2356 3588 7612114 7610880 0.000000e+00 1875.0
11 TraesCS3B01G023200 chr3D 90.993 544 25 12 8898 9426 7604848 7604314 0.000000e+00 712.0
12 TraesCS3B01G023200 chr3D 81.887 530 47 33 8921 9426 7695117 7695621 1.470000e-107 401.0
13 TraesCS3B01G023200 chr3D 93.085 188 10 3 3665 3849 7610711 7610524 1.210000e-68 272.0
14 TraesCS3B01G023200 chr3D 92.035 113 9 0 3971 4083 7610557 7610445 9.800000e-35 159.0
15 TraesCS3B01G023200 chr3D 96.078 51 2 0 3843 3893 20348850 20348800 6.070000e-12 84.2
16 TraesCS3B01G023200 chr3A 96.085 2886 81 19 712 3593 12775978 12778835 0.000000e+00 4674.0
17 TraesCS3B01G023200 chr3A 94.454 2993 94 23 3592 6554 12778904 12781854 0.000000e+00 4542.0
18 TraesCS3B01G023200 chr3A 89.226 1318 112 21 7125 8428 12782635 12783936 0.000000e+00 1620.0
19 TraesCS3B01G023200 chr3A 88.416 423 40 7 9011 9428 12784484 12784902 1.410000e-137 501.0
20 TraesCS3B01G023200 chr3A 82.231 484 58 19 8952 9426 12744893 12744429 8.880000e-105 392.0
21 TraesCS3B01G023200 chr3A 80.037 541 42 29 6603 7111 12781861 12782367 3.260000e-89 340.0
22 TraesCS3B01G023200 chr3A 80.620 129 20 5 100 224 475728865 475728738 2.800000e-15 95.3
23 TraesCS3B01G023200 chr4A 91.408 547 32 7 4315 4851 705707253 705707794 0.000000e+00 736.0
24 TraesCS3B01G023200 chr4A 92.042 377 17 6 4445 4820 705707262 705706898 1.400000e-142 518.0
25 TraesCS3B01G023200 chr4A 96.667 60 0 2 8452 8509 584931015 584930956 2.170000e-16 99.0
26 TraesCS3B01G023200 chr4A 95.161 62 0 3 8445 8505 71571036 71570977 2.800000e-15 95.3
27 TraesCS3B01G023200 chr5B 84.529 711 106 4 1 709 587437608 587438316 0.000000e+00 701.0
28 TraesCS3B01G023200 chr5B 93.651 63 2 2 8456 8516 246911440 246911502 1.010000e-14 93.5
29 TraesCS3B01G023200 chr5B 93.443 61 2 2 3624 3683 357553523 357553582 1.300000e-13 89.8
30 TraesCS3B01G023200 chr5B 88.235 68 6 2 3600 3666 671717108 671717174 7.850000e-11 80.5
31 TraesCS3B01G023200 chr7D 84.292 713 103 9 1 709 488614353 488615060 0.000000e+00 688.0
32 TraesCS3B01G023200 chr7D 77.835 388 48 23 9015 9388 479598622 479598259 1.240000e-48 206.0
33 TraesCS3B01G023200 chr7D 93.750 64 1 2 8444 8505 220975722 220975784 1.010000e-14 93.5
34 TraesCS3B01G023200 chr2A 82.609 713 115 9 1 709 71139566 71140273 1.040000e-173 621.0
35 TraesCS3B01G023200 chr2A 93.000 200 13 1 5357 5555 444792481 444792282 3.330000e-74 291.0
36 TraesCS3B01G023200 chr2A 87.500 64 5 3 3820 3881 88722724 88722662 4.720000e-08 71.3
37 TraesCS3B01G023200 chr1B 83.826 507 81 1 1 507 89378627 89379132 1.840000e-131 481.0
38 TraesCS3B01G023200 chr1B 85.864 191 25 2 520 709 89430935 89431124 1.610000e-47 202.0
39 TraesCS3B01G023200 chr1B 96.610 59 1 1 8455 8512 629828558 629828616 7.790000e-16 97.1
40 TraesCS3B01G023200 chr4D 83.402 488 78 3 220 707 455664844 455665328 5.190000e-122 449.0
41 TraesCS3B01G023200 chr5D 94.118 204 9 3 5350 5553 182934124 182933924 3.310000e-79 307.0
42 TraesCS3B01G023200 chr5D 93.564 202 13 0 5352 5553 360541857 360542058 1.540000e-77 302.0
43 TraesCS3B01G023200 chr5D 95.000 60 3 0 8455 8514 260669810 260669869 2.800000e-15 95.3
44 TraesCS3B01G023200 chr5D 100.000 43 0 0 3624 3666 238386561 238386519 7.850000e-11 80.5
45 TraesCS3B01G023200 chr7B 92.574 202 15 0 5352 5553 141816126 141815925 3.330000e-74 291.0
46 TraesCS3B01G023200 chr7B 77.778 387 50 20 9015 9388 505369526 505369163 1.240000e-48 206.0
47 TraesCS3B01G023200 chr7B 90.323 62 5 1 3845 3905 401557197 401557258 7.850000e-11 80.5
48 TraesCS3B01G023200 chr7B 88.889 63 6 1 3839 3900 516805103 516805165 1.020000e-09 76.8
49 TraesCS3B01G023200 chr7B 93.617 47 3 0 3847 3893 732633559 732633513 4.720000e-08 71.3
50 TraesCS3B01G023200 chr5A 93.401 197 11 2 5357 5553 210835108 210835302 3.330000e-74 291.0
51 TraesCS3B01G023200 chr2D 92.574 202 15 0 5352 5553 388833663 388833864 3.330000e-74 291.0
52 TraesCS3B01G023200 chr2D 91.748 206 16 1 5348 5553 380416525 380416729 1.550000e-72 285.0
53 TraesCS3B01G023200 chr2D 96.429 56 1 1 8456 8511 537703153 537703207 3.630000e-14 91.6
54 TraesCS3B01G023200 chr2D 87.692 65 6 2 3831 3893 558335035 558334971 3.650000e-09 75.0
55 TraesCS3B01G023200 chr1A 78.297 364 62 12 109 459 560810001 560810360 1.590000e-52 219.0
56 TraesCS3B01G023200 chr1A 90.625 64 5 1 3843 3905 477033552 477033489 6.070000e-12 84.2
57 TraesCS3B01G023200 chr2B 89.189 74 5 2 8432 8505 535698703 535698633 1.300000e-13 89.8
58 TraesCS3B01G023200 chr2B 93.220 59 2 2 3624 3681 762841807 762841864 1.690000e-12 86.1
59 TraesCS3B01G023200 chr2B 88.406 69 4 3 3600 3666 140758476 140758542 7.850000e-11 80.5
60 TraesCS3B01G023200 chr2B 88.235 68 6 2 3600 3666 517154368 517154302 7.850000e-11 80.5
61 TraesCS3B01G023200 chr2B 80.189 106 13 7 3563 3666 182153942 182154041 1.310000e-08 73.1
62 TraesCS3B01G023200 chr2B 87.302 63 3 3 3823 3885 538235324 538235381 6.110000e-07 67.6
63 TraesCS3B01G023200 chr7A 87.179 78 5 5 3624 3699 155147942 155147868 6.070000e-12 84.2
64 TraesCS3B01G023200 chr7A 86.441 59 6 2 3823 3880 253178389 253178446 7.900000e-06 63.9
65 TraesCS3B01G023200 chr4B 89.062 64 5 2 3844 3905 376149712 376149775 2.820000e-10 78.7
66 TraesCS3B01G023200 chr1D 91.228 57 5 0 3844 3900 204481651 204481595 2.820000e-10 78.7
67 TraesCS3B01G023200 chr6D 87.500 64 5 3 3822 3885 470786505 470786565 4.720000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G023200 chr3B 9930864 9940291 9427 True 17411.0 17411 100.000000 1 9428 1 chr3B.!!$R2 9427
1 TraesCS3B01G023200 chr3D 7604314 7614157 9843 True 1848.0 5036 93.792714 712 9426 7 chr3D.!!$R2 8714
2 TraesCS3B01G023200 chr3D 7695117 7695621 504 False 401.0 401 81.887000 8921 9426 1 chr3D.!!$F1 505
3 TraesCS3B01G023200 chr3A 12775978 12784902 8924 False 2335.4 4674 89.643600 712 9428 5 chr3A.!!$F1 8716
4 TraesCS3B01G023200 chr4A 705707253 705707794 541 False 736.0 736 91.408000 4315 4851 1 chr4A.!!$F1 536
5 TraesCS3B01G023200 chr5B 587437608 587438316 708 False 701.0 701 84.529000 1 709 1 chr5B.!!$F3 708
6 TraesCS3B01G023200 chr7D 488614353 488615060 707 False 688.0 688 84.292000 1 709 1 chr7D.!!$F2 708
7 TraesCS3B01G023200 chr2A 71139566 71140273 707 False 621.0 621 82.609000 1 709 1 chr2A.!!$F1 708
8 TraesCS3B01G023200 chr1B 89378627 89379132 505 False 481.0 481 83.826000 1 507 1 chr1B.!!$F1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
628 629 0.034476 CTGCTCTCCTCTTGTGTGCA 59.966 55.000 0.00 0.00 36.09 4.57 F
710 711 0.107508 ACCATTCGCACCATGAGGAG 60.108 55.000 0.00 0.00 38.69 3.69 F
931 934 0.330604 ATCCCATTGTCACTGCTGCT 59.669 50.000 0.00 0.00 0.00 4.24 F
936 939 0.538977 ATTGTCACTGCTGCTGCCTT 60.539 50.000 13.47 0.00 38.71 4.35 F
1823 1846 0.741326 GACTGATGCGTCCTGCTCTA 59.259 55.000 2.83 0.00 46.63 2.43 F
2025 2048 1.068474 CGGCGGGATTATAAGAAGCG 58.932 55.000 0.00 0.00 0.00 4.68 F
3750 4301 2.172851 TTTTCGGCTCGGCTAAGAAA 57.827 45.000 8.94 8.94 0.00 2.52 F
5452 6028 0.249120 TGGTTCTGGCACGTGGATAG 59.751 55.000 18.88 0.00 0.00 2.08 F
5454 6030 0.108138 GTTCTGGCACGTGGATAGCT 60.108 55.000 18.88 0.00 0.00 3.32 F
5485 6061 0.983378 ACCCCTGTCCATGGCTAGTC 60.983 60.000 6.96 0.00 0.00 2.59 F
6378 6969 1.144057 GGTATGTGCTCCCAGACGG 59.856 63.158 0.00 0.00 0.00 4.79 F
7161 8179 0.604511 AACTACCGTTTTCCCAGCCG 60.605 55.000 0.00 0.00 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1474 1497 0.038310 CCCCCTTGGTGGACTTCTTC 59.962 60.000 0.00 0.0 38.35 2.87 R
1768 1791 0.609131 AAGGAACAATGGCCCAGTCG 60.609 55.000 0.00 0.0 0.00 4.18 R
1850 1873 0.672401 TTCGAGTGATTTCCGTGGCC 60.672 55.000 0.00 0.0 0.00 5.36 R
1851 1874 1.327764 GATTCGAGTGATTTCCGTGGC 59.672 52.381 0.00 0.0 0.00 5.01 R
3069 3522 3.072211 GTTTCCTTTTACCTCCTCACCG 58.928 50.000 0.00 0.0 0.00 4.94 R
3897 4451 3.057174 TGTTTCACTCAAAACCGCTGTTT 60.057 39.130 0.00 0.0 46.50 2.83 R
5455 6031 0.320697 GACAGGGGTGCGAGTTAGTT 59.679 55.000 0.00 0.0 0.00 2.24 R
6587 7186 1.171308 CCCTTCACCATGCAGTTCTG 58.829 55.000 0.00 0.0 0.00 3.02 R
6604 7203 2.489938 TACTCACCAGAATTGTGCCC 57.510 50.000 0.00 0.0 33.71 5.36 R
6835 7460 3.092301 ACCCCTTAAAGATCAGCAAAGC 58.908 45.455 0.00 0.0 0.00 3.51 R
8121 9153 0.163788 CAAAGTTACACTGCCTCGCG 59.836 55.000 0.00 0.0 0.00 5.87 R
8881 10809 0.036765 AATAGTTCCGCGTTGCCTGA 60.037 50.000 4.92 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.072331 ACACTTCCGCTTCAAGGATGT 59.928 47.619 0.00 0.00 43.99 3.06
32 33 1.339151 ACTTCCGCTTCAAGGATGTCC 60.339 52.381 0.00 0.00 40.70 4.02
33 34 0.035439 TTCCGCTTCAAGGATGTCCC 60.035 55.000 0.00 0.00 37.65 4.46
44 45 3.272716 AGGATGTCCCTCATAGCATCT 57.727 47.619 0.00 0.00 43.31 2.90
47 48 3.072184 GGATGTCCCTCATAGCATCTGTT 59.928 47.826 0.00 0.00 38.16 3.16
53 54 1.453524 CTCATAGCATCTGTTACGCGC 59.546 52.381 5.73 0.00 0.00 6.86
62 63 3.708734 GTTACGCGCGGTTGCACT 61.709 61.111 35.22 13.81 42.97 4.40
65 66 2.703425 TTACGCGCGGTTGCACTTTG 62.703 55.000 35.22 1.22 42.97 2.77
66 67 4.605967 CGCGCGGTTGCACTTTGT 62.606 61.111 24.84 0.00 42.97 2.83
67 68 2.278531 GCGCGGTTGCACTTTGTT 60.279 55.556 8.83 0.00 42.97 2.83
68 69 2.576002 GCGCGGTTGCACTTTGTTG 61.576 57.895 8.83 0.00 42.97 3.33
76 77 3.429410 GGTTGCACTTTGTTGAGAAGCTT 60.429 43.478 0.00 0.00 0.00 3.74
77 78 3.425577 TGCACTTTGTTGAGAAGCTTG 57.574 42.857 2.10 0.00 0.00 4.01
78 79 3.016031 TGCACTTTGTTGAGAAGCTTGA 58.984 40.909 2.10 0.00 0.00 3.02
82 83 4.016444 ACTTTGTTGAGAAGCTTGACCAA 58.984 39.130 2.10 1.95 0.00 3.67
84 85 3.281727 TGTTGAGAAGCTTGACCAAGT 57.718 42.857 2.10 0.00 40.45 3.16
87 88 0.877743 GAGAAGCTTGACCAAGTGGC 59.122 55.000 2.10 0.00 40.45 5.01
88 89 0.475906 AGAAGCTTGACCAAGTGGCT 59.524 50.000 2.10 1.10 40.45 4.75
92 93 0.538287 GCTTGACCAAGTGGCTTCCT 60.538 55.000 10.96 0.00 40.45 3.36
95 96 1.376037 GACCAAGTGGCTTCCTCCG 60.376 63.158 0.00 0.00 39.32 4.63
97 98 2.747855 CAAGTGGCTTCCTCCGGC 60.748 66.667 0.00 0.00 0.00 6.13
110 111 0.320421 CTCCGGCGGAAGTGAAAAGA 60.320 55.000 30.59 2.94 0.00 2.52
145 146 8.807948 AATGAACACACATAGTTATTAAGCCT 57.192 30.769 0.00 0.00 0.00 4.58
161 162 1.352687 AGCCTTTCTCCTTCCTTCACC 59.647 52.381 0.00 0.00 0.00 4.02
173 174 0.978146 CCTTCACCTCCGTCCCATCT 60.978 60.000 0.00 0.00 0.00 2.90
177 178 0.978146 CACCTCCGTCCCATCTTCCT 60.978 60.000 0.00 0.00 0.00 3.36
182 183 0.466124 CCGTCCCATCTTCCTTCCTC 59.534 60.000 0.00 0.00 0.00 3.71
197 198 6.874278 TCCTTCCTCAACATCTTGATTCTA 57.126 37.500 0.00 0.00 35.78 2.10
210 211 8.465201 ACATCTTGATTCTATTTGCTTTCTTCC 58.535 33.333 0.00 0.00 0.00 3.46
236 237 1.331756 GACGCCACTGCCATGAAATAG 59.668 52.381 0.00 0.00 0.00 1.73
260 261 2.508526 GTGCACTTGTTCCCATCTCTT 58.491 47.619 10.32 0.00 0.00 2.85
266 267 3.330701 ACTTGTTCCCATCTCTTAGCCAA 59.669 43.478 0.00 0.00 0.00 4.52
269 270 3.782523 TGTTCCCATCTCTTAGCCAAGAT 59.217 43.478 0.00 0.00 40.03 2.40
287 288 8.192774 AGCCAAGATACATGTGATAATTGTTTG 58.807 33.333 9.11 1.42 0.00 2.93
299 300 6.259829 GTGATAATTGTTTGGCTTTGGTGTTT 59.740 34.615 0.00 0.00 0.00 2.83
301 302 5.559427 AATTGTTTGGCTTTGGTGTTTTC 57.441 34.783 0.00 0.00 0.00 2.29
305 306 3.535280 TTGGCTTTGGTGTTTTCCTTC 57.465 42.857 0.00 0.00 0.00 3.46
311 312 4.097892 GCTTTGGTGTTTTCCTTCTCTTCA 59.902 41.667 0.00 0.00 0.00 3.02
323 324 3.118445 CCTTCTCTTCAAGGTCCTCCATC 60.118 52.174 0.00 0.00 38.58 3.51
365 366 6.554605 CCTCCTCTCTTATTTTCTCCTCAGAT 59.445 42.308 0.00 0.00 0.00 2.90
383 384 1.130054 ATACCGGAGCCCTCATGCAT 61.130 55.000 9.46 0.00 0.00 3.96
386 387 1.147824 CGGAGCCCTCATGCATCTT 59.852 57.895 0.00 0.00 0.00 2.40
389 390 1.133853 GGAGCCCTCATGCATCTTTCT 60.134 52.381 0.00 0.00 0.00 2.52
392 393 3.044156 AGCCCTCATGCATCTTTCTAGA 58.956 45.455 0.00 0.00 34.21 2.43
396 397 4.344679 CCCTCATGCATCTTTCTAGACTCT 59.655 45.833 0.00 0.00 31.99 3.24
398 399 5.273674 TCATGCATCTTTCTAGACTCTGG 57.726 43.478 0.00 0.00 31.99 3.86
442 443 3.787001 CTCCCCCGCCACTTCCTC 61.787 72.222 0.00 0.00 0.00 3.71
472 473 1.229625 TCATCCTCCCAGCCACACT 60.230 57.895 0.00 0.00 0.00 3.55
478 479 4.641645 CCCAGCCACACTCCGCAA 62.642 66.667 0.00 0.00 0.00 4.85
491 492 2.391821 CGCAACGCAGAAGCTACG 59.608 61.111 0.00 0.00 39.10 3.51
497 498 0.961358 ACGCAGAAGCTACGTCTCCT 60.961 55.000 0.00 0.00 39.10 3.69
507 508 0.997363 TACGTCTCCTCTTCCCTCCA 59.003 55.000 0.00 0.00 0.00 3.86
508 509 0.114560 ACGTCTCCTCTTCCCTCCAA 59.885 55.000 0.00 0.00 0.00 3.53
510 511 1.834263 CGTCTCCTCTTCCCTCCAAAT 59.166 52.381 0.00 0.00 0.00 2.32
515 516 2.131023 CCTCTTCCCTCCAAATAGCCT 58.869 52.381 0.00 0.00 0.00 4.58
517 518 3.716872 CCTCTTCCCTCCAAATAGCCTTA 59.283 47.826 0.00 0.00 0.00 2.69
518 519 4.352298 CCTCTTCCCTCCAAATAGCCTTAT 59.648 45.833 0.00 0.00 0.00 1.73
524 525 4.387437 CCCTCCAAATAGCCTTATTCCCAA 60.387 45.833 0.00 0.00 0.00 4.12
533 534 1.287739 CCTTATTCCCAAGCCCCTTGA 59.712 52.381 6.54 0.00 43.42 3.02
536 537 0.786435 ATTCCCAAGCCCCTTGAACT 59.214 50.000 6.54 0.00 43.42 3.01
539 540 1.244019 CCCAAGCCCCTTGAACTTCG 61.244 60.000 6.54 0.00 43.42 3.79
545 546 1.237285 CCCCTTGAACTTCGGCACTG 61.237 60.000 0.00 0.00 0.00 3.66
548 549 0.877071 CTTGAACTTCGGCACTGCAT 59.123 50.000 2.82 0.00 0.00 3.96
584 585 0.467290 ACCAGGCCTCAAAGCGAAAA 60.467 50.000 0.00 0.00 0.00 2.29
587 588 0.467290 AGGCCTCAAAGCGAAAACCA 60.467 50.000 0.00 0.00 0.00 3.67
588 589 0.603065 GGCCTCAAAGCGAAAACCAT 59.397 50.000 0.00 0.00 0.00 3.55
593 594 2.293122 CTCAAAGCGAAAACCATGGTCA 59.707 45.455 20.07 0.00 0.00 4.02
596 597 1.209127 GCGAAAACCATGGTCACCG 59.791 57.895 20.07 20.80 0.00 4.94
613 614 4.496336 GCCCGCCATCCTTCTGCT 62.496 66.667 0.00 0.00 0.00 4.24
614 615 2.203126 CCCGCCATCCTTCTGCTC 60.203 66.667 0.00 0.00 0.00 4.26
615 616 2.739996 CCCGCCATCCTTCTGCTCT 61.740 63.158 0.00 0.00 0.00 4.09
617 618 1.227497 CGCCATCCTTCTGCTCTCC 60.227 63.158 0.00 0.00 0.00 3.71
618 619 1.684386 CGCCATCCTTCTGCTCTCCT 61.684 60.000 0.00 0.00 0.00 3.69
623 624 2.317371 TCCTTCTGCTCTCCTCTTGT 57.683 50.000 0.00 0.00 0.00 3.16
628 629 0.034476 CTGCTCTCCTCTTGTGTGCA 59.966 55.000 0.00 0.00 36.09 4.57
632 633 2.843701 CTCTCCTCTTGTGTGCAAACT 58.156 47.619 8.83 0.00 33.73 2.66
635 636 4.973168 TCTCCTCTTGTGTGCAAACTATT 58.027 39.130 8.83 0.00 33.73 1.73
643 644 4.968259 TGTGTGCAAACTATTACTGGTCT 58.032 39.130 8.83 0.00 0.00 3.85
650 651 7.171678 GTGCAAACTATTACTGGTCTATGATCC 59.828 40.741 0.00 0.00 0.00 3.36
673 674 1.227497 GCCGAGGAGCTCCATTGAG 60.227 63.158 33.90 17.97 41.84 3.02
709 710 0.327924 AACCATTCGCACCATGAGGA 59.672 50.000 0.00 0.00 38.69 3.71
710 711 0.107508 ACCATTCGCACCATGAGGAG 60.108 55.000 0.00 0.00 38.69 3.69
792 794 2.194597 GTGGGGCCACAGTCAACA 59.805 61.111 8.77 0.00 45.53 3.33
793 795 1.898574 GTGGGGCCACAGTCAACAG 60.899 63.158 8.77 0.00 45.53 3.16
794 796 2.382770 TGGGGCCACAGTCAACAGT 61.383 57.895 1.54 0.00 0.00 3.55
795 797 1.600916 GGGGCCACAGTCAACAGTC 60.601 63.158 4.39 0.00 0.00 3.51
796 798 1.148273 GGGCCACAGTCAACAGTCA 59.852 57.895 4.39 0.00 0.00 3.41
797 799 0.886490 GGGCCACAGTCAACAGTCAG 60.886 60.000 4.39 0.00 0.00 3.51
805 807 4.517075 CACAGTCAACAGTCAGAGAGTCTA 59.483 45.833 0.00 0.00 0.00 2.59
836 838 4.244425 TCTTTTCACGAGAAGAGTCCTG 57.756 45.455 11.80 0.00 37.29 3.86
923 926 3.213506 CAAAGCGGATATCCCATTGTCA 58.786 45.455 16.36 0.00 34.14 3.58
930 933 2.042686 TATCCCATTGTCACTGCTGC 57.957 50.000 0.00 0.00 0.00 5.25
931 934 0.330604 ATCCCATTGTCACTGCTGCT 59.669 50.000 0.00 0.00 0.00 4.24
932 935 0.607217 TCCCATTGTCACTGCTGCTG 60.607 55.000 4.89 4.89 0.00 4.41
933 936 1.211969 CCATTGTCACTGCTGCTGC 59.788 57.895 8.89 8.89 40.20 5.25
934 937 1.211969 CATTGTCACTGCTGCTGCC 59.788 57.895 13.47 0.00 38.71 4.85
935 938 1.074423 ATTGTCACTGCTGCTGCCT 59.926 52.632 13.47 0.00 38.71 4.75
936 939 0.538977 ATTGTCACTGCTGCTGCCTT 60.539 50.000 13.47 0.00 38.71 4.35
937 940 1.168407 TTGTCACTGCTGCTGCCTTC 61.168 55.000 13.47 0.48 38.71 3.46
938 941 2.033141 TCACTGCTGCTGCCTTCC 59.967 61.111 13.47 0.00 38.71 3.46
939 942 3.060615 CACTGCTGCTGCCTTCCC 61.061 66.667 13.47 0.00 38.71 3.97
940 943 3.573229 ACTGCTGCTGCCTTCCCA 61.573 61.111 13.47 0.00 38.71 4.37
941 944 2.282674 CTGCTGCTGCCTTCCCAA 60.283 61.111 13.47 0.00 38.71 4.12
942 945 2.282674 TGCTGCTGCCTTCCCAAG 60.283 61.111 13.47 0.00 38.71 3.61
943 946 3.756727 GCTGCTGCCTTCCCAAGC 61.757 66.667 3.85 0.00 0.00 4.01
944 947 2.035312 CTGCTGCCTTCCCAAGCT 59.965 61.111 0.00 0.00 0.00 3.74
945 948 2.282674 TGCTGCCTTCCCAAGCTG 60.283 61.111 0.00 0.00 0.00 4.24
946 949 3.756727 GCTGCCTTCCCAAGCTGC 61.757 66.667 0.00 0.00 44.79 5.25
947 950 2.035312 CTGCCTTCCCAAGCTGCT 59.965 61.111 0.00 0.00 0.00 4.24
948 951 2.034687 TGCCTTCCCAAGCTGCTC 59.965 61.111 1.00 0.00 0.00 4.26
1012 1035 0.755686 GGAGACGATGGAGGCAAGAT 59.244 55.000 0.00 0.00 0.00 2.40
1053 1076 2.948315 GCTGCCTAATCCCTTCTTCTTG 59.052 50.000 0.00 0.00 0.00 3.02
1220 1243 2.202864 GCGCCTCCTCTTGCTCTC 60.203 66.667 0.00 0.00 0.00 3.20
1285 1308 1.478510 CACGGCTTCATCTACCTCAGT 59.521 52.381 0.00 0.00 0.00 3.41
1427 1450 1.039785 TGCTGCTGCGACTCCTATCT 61.040 55.000 11.21 0.00 43.34 1.98
1534 1557 1.382914 AGGATAAACACCCCAAGCCT 58.617 50.000 0.00 0.00 0.00 4.58
1572 1595 4.681978 GCCTCACAAGACGCCGGT 62.682 66.667 1.90 0.00 0.00 5.28
1574 1597 2.738521 CTCACAAGACGCCGGTGG 60.739 66.667 21.14 6.53 33.45 4.61
1575 1598 4.980805 TCACAAGACGCCGGTGGC 62.981 66.667 21.14 18.29 46.75 5.01
1630 1653 7.250032 AGATGGCACTGATAATAAGCTATCA 57.750 36.000 10.79 0.00 43.09 2.15
1737 1760 6.528072 GCAGAGGTTAACAATATTTCAAGTGC 59.472 38.462 8.10 0.00 0.00 4.40
1768 1791 3.487207 CGAAGAAAAAGAAAGCAAGTGGC 59.513 43.478 0.00 0.00 45.30 5.01
1813 1836 3.260483 GCTGCTCCGACTGATGCG 61.260 66.667 0.00 0.00 0.00 4.73
1816 1839 2.583593 GCTCCGACTGATGCGTCC 60.584 66.667 2.83 0.00 0.00 4.79
1823 1846 0.741326 GACTGATGCGTCCTGCTCTA 59.259 55.000 2.83 0.00 46.63 2.43
1850 1873 2.065483 CCATTTGGGGGTTTGGGTG 58.935 57.895 0.00 0.00 0.00 4.61
1851 1874 1.487850 CCATTTGGGGGTTTGGGTGG 61.488 60.000 0.00 0.00 0.00 4.61
1897 1920 3.090765 CCCAAGGTGCTAGGCCTT 58.909 61.111 12.58 0.00 46.39 4.35
1998 2021 4.113815 CAGCGGGCCTGGATGGAA 62.114 66.667 15.02 0.00 37.93 3.53
2020 2043 3.724374 TGAAACTCGGCGGGATTATAAG 58.276 45.455 16.65 0.00 0.00 1.73
2025 2048 1.068474 CGGCGGGATTATAAGAAGCG 58.932 55.000 0.00 0.00 0.00 4.68
2034 2057 5.049405 GGGATTATAAGAAGCGTGTGGATTG 60.049 44.000 0.00 0.00 0.00 2.67
2084 2107 3.416156 GGTAATGATCCTGGCTCATTCC 58.584 50.000 24.56 20.59 41.28 3.01
2305 2329 2.234908 GTCAGGTCAGCCATTAGTCACT 59.765 50.000 0.00 0.00 37.19 3.41
2391 2837 9.710900 AGTTCAATGGAGAAACAAAAATAATCC 57.289 29.630 0.00 0.00 0.00 3.01
2598 3049 7.562454 ACATGTGGATGATGGATCAAATAAGTT 59.438 33.333 0.00 0.00 40.69 2.66
2960 3413 6.989169 GCTGAAGAATGTTCATATGTACCTCT 59.011 38.462 9.67 8.62 0.00 3.69
3005 3458 8.250332 AGAAAACTTGAATTTGACTAAAGCACA 58.750 29.630 0.00 0.00 0.00 4.57
3069 3522 3.071479 TGATTGCGAGGAAGTTGGTTAC 58.929 45.455 0.00 0.00 0.00 2.50
3529 3988 9.143155 ACCAAGAATGTGTTTCTAAATACCTTT 57.857 29.630 0.68 0.00 44.09 3.11
3572 4031 3.775316 TCTCATCTTTTGTACTCCCTCCC 59.225 47.826 0.00 0.00 0.00 4.30
3589 4048 4.350816 CCCTCCCATCCATAATAACTGTCA 59.649 45.833 0.00 0.00 0.00 3.58
3590 4049 5.513788 CCCTCCCATCCATAATAACTGTCAG 60.514 48.000 0.00 0.00 0.00 3.51
3597 4125 8.199449 CCATCCATAATAACTGTCAGCAAAATT 58.801 33.333 0.00 0.00 0.00 1.82
3750 4301 2.172851 TTTTCGGCTCGGCTAAGAAA 57.827 45.000 8.94 8.94 0.00 2.52
3983 4537 9.314321 CTAGTAACATATTTTGTCCGAATCACT 57.686 33.333 0.00 0.00 37.68 3.41
4001 4555 9.516314 CGAATCACTCAATCACTACTTGTATAA 57.484 33.333 0.00 0.00 0.00 0.98
4322 4876 6.238320 GGTGCTGAACTATCAAGAAATAGCTG 60.238 42.308 0.00 0.00 34.49 4.24
4858 5424 8.437360 TTGCACCTGAATATGTGAATAACTAG 57.563 34.615 0.00 0.00 34.37 2.57
4875 5441 5.435686 AACTAGCTATGATTGACAACCCA 57.564 39.130 0.00 0.00 0.00 4.51
5452 6028 0.249120 TGGTTCTGGCACGTGGATAG 59.751 55.000 18.88 0.00 0.00 2.08
5453 6029 1.090052 GGTTCTGGCACGTGGATAGC 61.090 60.000 18.88 1.27 0.00 2.97
5454 6030 0.108138 GTTCTGGCACGTGGATAGCT 60.108 55.000 18.88 0.00 0.00 3.32
5455 6031 1.136305 GTTCTGGCACGTGGATAGCTA 59.864 52.381 18.88 0.00 0.00 3.32
5456 6032 1.480789 TCTGGCACGTGGATAGCTAA 58.519 50.000 18.88 0.00 0.00 3.09
5485 6061 0.983378 ACCCCTGTCCATGGCTAGTC 60.983 60.000 6.96 0.00 0.00 2.59
5593 6169 6.620678 TGTTTAAATTTGAGTAGCTGCCATC 58.379 36.000 0.00 0.00 0.00 3.51
5616 6192 7.400599 TCGAACTAGGTAGTATTGTGACATT 57.599 36.000 0.00 0.00 34.99 2.71
5826 6402 8.281212 ACTAATTTTAGATTGAAGCACGGAAT 57.719 30.769 4.40 0.00 34.84 3.01
5828 6404 9.651718 CTAATTTTAGATTGAAGCACGGAATAC 57.348 33.333 0.00 0.00 32.47 1.89
5941 6517 4.319177 AGACTGTTGTCAAATGGTAGCTC 58.681 43.478 0.00 0.00 45.20 4.09
6018 6609 2.507058 AGCTGTGAGCCCATTATTGAGA 59.493 45.455 0.00 0.00 43.77 3.27
6157 6748 5.438761 AATCTGTGTTCAAACAAGCCTAC 57.561 39.130 0.00 0.00 41.21 3.18
6323 6914 3.748048 TGAGCTTTTGTCCTCAGAAATCG 59.252 43.478 0.00 0.00 33.44 3.34
6355 6946 7.425606 CCCCACTAAGATTGCATATTTGTTAC 58.574 38.462 0.00 0.00 0.00 2.50
6378 6969 1.144057 GGTATGTGCTCCCAGACGG 59.856 63.158 0.00 0.00 0.00 4.79
6587 7186 2.664081 CCTCCTCCTGGTGCTGTCC 61.664 68.421 0.00 0.00 34.23 4.02
6604 7203 1.808945 GTCCAGAACTGCATGGTGAAG 59.191 52.381 4.04 0.00 37.84 3.02
6856 7481 3.092301 GCTTTGCTGATCTTTAAGGGGT 58.908 45.455 0.00 0.00 0.00 4.95
6859 7484 3.560636 TGCTGATCTTTAAGGGGTAGC 57.439 47.619 0.00 0.00 0.00 3.58
6865 7490 6.420913 TGATCTTTAAGGGGTAGCTCATAC 57.579 41.667 0.00 0.00 0.00 2.39
6868 7493 6.420913 TCTTTAAGGGGTAGCTCATACATC 57.579 41.667 0.00 0.00 35.96 3.06
6869 7494 5.903010 TCTTTAAGGGGTAGCTCATACATCA 59.097 40.000 0.00 0.00 35.96 3.07
6871 7496 7.733047 TCTTTAAGGGGTAGCTCATACATCATA 59.267 37.037 0.00 0.00 35.96 2.15
6872 7497 7.865530 TTAAGGGGTAGCTCATACATCATAA 57.134 36.000 0.00 0.00 35.96 1.90
7039 7803 9.141400 GTCGACATCTCTAAGAAACTAAAACAT 57.859 33.333 11.55 0.00 0.00 2.71
7050 7814 8.685838 AAGAAACTAAAACATAAGGTGCAGTA 57.314 30.769 0.00 0.00 0.00 2.74
7080 7844 7.227711 TCAAATTATTGAGTTTCGTCACTTCCA 59.772 33.333 0.00 0.00 40.59 3.53
7161 8179 0.604511 AACTACCGTTTTCCCAGCCG 60.605 55.000 0.00 0.00 0.00 5.52
7260 8281 2.566833 TGAACTCATCCACAACCCTG 57.433 50.000 0.00 0.00 0.00 4.45
7398 8423 7.730364 GCACCATGTAATTATAGTGCTTAGT 57.270 36.000 15.12 0.00 45.40 2.24
7406 8431 8.875803 TGTAATTATAGTGCTTAGTTTTGACCG 58.124 33.333 0.00 0.00 0.00 4.79
7523 8548 1.021390 CCCTGTCGAACAGCATCCAC 61.021 60.000 8.85 0.00 44.63 4.02
7656 8684 5.018539 ACTTTTCAACTAAACCCCTTTGC 57.981 39.130 0.00 0.00 0.00 3.68
7696 8724 4.215908 TCATCTAGCCGTCTTCCAATAGT 58.784 43.478 0.00 0.00 0.00 2.12
7783 8811 8.322091 ACACTCTATCACAAAAGGTAGCTTATT 58.678 33.333 7.76 2.30 0.00 1.40
7784 8812 8.607459 CACTCTATCACAAAAGGTAGCTTATTG 58.393 37.037 19.16 19.16 0.00 1.90
7794 8824 6.560253 AAGGTAGCTTATTGTTGAACTGTG 57.440 37.500 5.12 0.00 0.00 3.66
7802 8832 6.697019 GCTTATTGTTGAACTGTGAATGTGTT 59.303 34.615 0.00 0.00 0.00 3.32
7808 8838 7.095910 TGTTGAACTGTGAATGTGTTGAAATT 58.904 30.769 0.00 0.00 0.00 1.82
7809 8839 7.063191 TGTTGAACTGTGAATGTGTTGAAATTG 59.937 33.333 0.00 0.00 0.00 2.32
7810 8840 6.629128 TGAACTGTGAATGTGTTGAAATTGT 58.371 32.000 0.00 0.00 0.00 2.71
7817 8847 8.246871 TGTGAATGTGTTGAAATTGTTTACTGA 58.753 29.630 0.00 0.00 0.00 3.41
7955 8987 0.911769 TGTCACTGATGGGCTAAGGG 59.088 55.000 0.00 0.00 0.00 3.95
7961 8993 1.839994 CTGATGGGCTAAGGGTCTTCA 59.160 52.381 0.00 0.00 0.00 3.02
8026 9058 5.867903 AACATGGACCATTGTGAGAAAAA 57.132 34.783 3.52 0.00 0.00 1.94
8100 9132 4.562143 GGGATGAAAGTTGCTTTGCAGAAT 60.562 41.667 0.00 0.00 40.61 2.40
8101 9133 4.624452 GGATGAAAGTTGCTTTGCAGAATC 59.376 41.667 0.00 0.00 40.61 2.52
8102 9134 4.652421 TGAAAGTTGCTTTGCAGAATCA 57.348 36.364 0.00 0.00 40.61 2.57
8103 9135 4.362279 TGAAAGTTGCTTTGCAGAATCAC 58.638 39.130 0.00 0.00 40.61 3.06
8104 9136 4.142204 TGAAAGTTGCTTTGCAGAATCACA 60.142 37.500 0.00 0.00 40.61 3.58
8105 9137 4.389890 AAGTTGCTTTGCAGAATCACAA 57.610 36.364 0.00 0.00 40.61 3.33
8121 9153 6.648725 AGAATCACAAGTAAAGAAGCTGAGAC 59.351 38.462 0.00 0.00 0.00 3.36
8132 9164 2.505777 CTGAGACGCGAGGCAGTG 60.506 66.667 15.93 0.00 46.78 3.66
8136 9168 1.071567 GAGACGCGAGGCAGTGTAAC 61.072 60.000 15.93 0.00 46.78 2.50
8176 9208 7.095270 AGCTTTGAAAGATCATTTGTGAATCC 58.905 34.615 9.48 0.00 34.96 3.01
8214 9246 0.947660 AGCTGCGATGCGATATGTGG 60.948 55.000 0.00 0.00 38.13 4.17
8222 9255 1.727467 GCGATATGTGGCGCCTTTT 59.273 52.632 29.70 14.24 46.93 2.27
8246 9279 8.579682 TTCTCATGTGATCGTATTTCATACTG 57.420 34.615 0.00 0.00 33.59 2.74
8247 9280 6.642540 TCTCATGTGATCGTATTTCATACTGC 59.357 38.462 0.00 0.00 33.59 4.40
8252 9285 3.159353 TCGTATTTCATACTGCGTGCT 57.841 42.857 0.00 0.00 33.59 4.40
8286 9319 4.321718 CAGGATATGTGTGCATAAGAGGG 58.678 47.826 0.00 0.00 40.55 4.30
8289 9322 4.757149 GGATATGTGTGCATAAGAGGGTTC 59.243 45.833 0.00 0.00 40.55 3.62
8320 9353 1.517210 GAGATCCCCGAGGCGACTAC 61.517 65.000 0.00 0.00 44.43 2.73
8343 9376 2.731217 GCCGCATTACATTCCATCAAC 58.269 47.619 0.00 0.00 0.00 3.18
8359 9392 4.377431 CCATCAACGAAAAGAAAGAGGACG 60.377 45.833 0.00 0.00 0.00 4.79
8370 9403 0.250901 AAGAGGACGGCAGCAAACAT 60.251 50.000 0.00 0.00 0.00 2.71
8377 9410 2.227865 GACGGCAGCAAACATAAGGAAA 59.772 45.455 0.00 0.00 0.00 3.13
8400 9433 2.685999 GGGCTGGGGAAGAGCAAT 59.314 61.111 0.00 0.00 38.27 3.56
8432 9465 3.546218 GCGCCTTCGACAAATTAGGAATC 60.546 47.826 0.00 0.00 38.10 2.52
8434 9467 4.494199 CGCCTTCGACAAATTAGGAATCAC 60.494 45.833 2.70 0.00 38.10 3.06
8437 9470 5.808540 CCTTCGACAAATTAGGAATCACGTA 59.191 40.000 0.00 0.00 0.00 3.57
8440 9473 6.157904 TCGACAAATTAGGAATCACGTAACA 58.842 36.000 0.00 0.00 32.82 2.41
8441 9474 6.814644 TCGACAAATTAGGAATCACGTAACAT 59.185 34.615 0.00 0.00 32.82 2.71
8443 9476 7.010183 CGACAAATTAGGAATCACGTAACATCT 59.990 37.037 0.00 0.00 32.82 2.90
8444 9477 9.309516 GACAAATTAGGAATCACGTAACATCTA 57.690 33.333 0.00 0.00 32.82 1.98
8446 9479 9.314321 CAAATTAGGAATCACGTAACATCTACT 57.686 33.333 0.00 0.00 32.82 2.57
8447 9480 9.530633 AAATTAGGAATCACGTAACATCTACTC 57.469 33.333 0.00 0.00 32.82 2.59
8448 9481 5.517322 AGGAATCACGTAACATCTACTCC 57.483 43.478 0.00 0.00 0.00 3.85
8450 9483 4.341520 GGAATCACGTAACATCTACTCCCT 59.658 45.833 0.00 0.00 0.00 4.20
8452 9485 4.232188 TCACGTAACATCTACTCCCTCT 57.768 45.455 0.00 0.00 0.00 3.69
8453 9486 3.945921 TCACGTAACATCTACTCCCTCTG 59.054 47.826 0.00 0.00 0.00 3.35
8470 9503 8.749026 CTCCCTCTGAGTATAAAGTTAGTACA 57.251 38.462 3.66 0.00 36.27 2.90
8471 9504 9.186837 CTCCCTCTGAGTATAAAGTTAGTACAA 57.813 37.037 3.66 0.00 36.27 2.41
8472 9505 9.537852 TCCCTCTGAGTATAAAGTTAGTACAAA 57.462 33.333 3.66 0.00 0.00 2.83
8473 9506 9.804758 CCCTCTGAGTATAAAGTTAGTACAAAG 57.195 37.037 3.66 0.00 0.00 2.77
8491 9524 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
8493 9526 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
8494 9527 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
8495 9528 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
8497 9530 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
8498 9531 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
8500 9533 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
8502 9535 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
8503 9536 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
8504 9537 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
8505 9538 4.778958 TCTATTTTGGAACGGAGGGAGTAA 59.221 41.667 0.00 0.00 0.00 2.24
8506 9539 3.860968 TTTTGGAACGGAGGGAGTAAA 57.139 42.857 0.00 0.00 0.00 2.01
8507 9540 3.860968 TTTGGAACGGAGGGAGTAAAA 57.139 42.857 0.00 0.00 0.00 1.52
8508 9541 4.376225 TTTGGAACGGAGGGAGTAAAAT 57.624 40.909 0.00 0.00 0.00 1.82
8509 9542 3.622166 TGGAACGGAGGGAGTAAAATC 57.378 47.619 0.00 0.00 0.00 2.17
8510 9543 3.178865 TGGAACGGAGGGAGTAAAATCT 58.821 45.455 0.00 0.00 0.00 2.40
8511 9544 4.355549 TGGAACGGAGGGAGTAAAATCTA 58.644 43.478 0.00 0.00 0.00 1.98
8512 9545 4.778958 TGGAACGGAGGGAGTAAAATCTAA 59.221 41.667 0.00 0.00 0.00 2.10
8513 9546 5.427481 TGGAACGGAGGGAGTAAAATCTAAT 59.573 40.000 0.00 0.00 0.00 1.73
8514 9547 5.990386 GGAACGGAGGGAGTAAAATCTAATC 59.010 44.000 0.00 0.00 0.00 1.75
8515 9548 6.183360 GGAACGGAGGGAGTAAAATCTAATCT 60.183 42.308 0.00 0.00 0.00 2.40
8516 9549 6.163135 ACGGAGGGAGTAAAATCTAATCTG 57.837 41.667 0.00 0.00 0.00 2.90
8517 9550 5.070580 ACGGAGGGAGTAAAATCTAATCTGG 59.929 44.000 0.00 0.00 0.00 3.86
8518 9551 5.511545 CGGAGGGAGTAAAATCTAATCTGGG 60.512 48.000 0.00 0.00 0.00 4.45
8519 9552 5.221945 GGAGGGAGTAAAATCTAATCTGGGG 60.222 48.000 0.00 0.00 0.00 4.96
8520 9553 4.104897 AGGGAGTAAAATCTAATCTGGGGC 59.895 45.833 0.00 0.00 0.00 5.80
8521 9554 4.141251 GGGAGTAAAATCTAATCTGGGGCA 60.141 45.833 0.00 0.00 0.00 5.36
8522 9555 5.458215 GGGAGTAAAATCTAATCTGGGGCAT 60.458 44.000 0.00 0.00 0.00 4.40
8523 9556 5.474876 GGAGTAAAATCTAATCTGGGGCATG 59.525 44.000 0.00 0.00 0.00 4.06
8524 9557 5.388654 AGTAAAATCTAATCTGGGGCATGG 58.611 41.667 0.00 0.00 0.00 3.66
8525 9558 4.541250 AAAATCTAATCTGGGGCATGGA 57.459 40.909 0.00 0.00 0.00 3.41
8526 9559 3.803186 AATCTAATCTGGGGCATGGAG 57.197 47.619 0.00 0.00 0.00 3.86
8527 9560 2.196742 TCTAATCTGGGGCATGGAGT 57.803 50.000 0.00 0.00 0.00 3.85
8528 9561 3.344535 TCTAATCTGGGGCATGGAGTA 57.655 47.619 0.00 0.00 0.00 2.59
8529 9562 3.242867 TCTAATCTGGGGCATGGAGTAG 58.757 50.000 0.00 0.00 0.00 2.57
8533 9566 2.050144 TCTGGGGCATGGAGTAGATTC 58.950 52.381 0.00 0.00 0.00 2.52
8564 9597 2.040606 ACCGATGGTAGCTGGGGT 59.959 61.111 0.00 0.00 32.11 4.95
8616 9651 5.597182 TGGTTGTCTTAGTATAGGGCTAGTG 59.403 44.000 0.00 0.00 0.00 2.74
8629 9665 3.133721 AGGGCTAGTGAGAAATGTAGCTG 59.866 47.826 0.00 0.00 38.37 4.24
8636 9672 4.125703 GTGAGAAATGTAGCTGGATGGAG 58.874 47.826 0.00 0.00 0.00 3.86
8660 9696 4.119862 GGTTAGAGCGATTGCAGATGTAA 58.880 43.478 7.90 0.00 46.23 2.41
8722 9758 1.751927 GGAGCCCTTGCCAGTCATG 60.752 63.158 0.00 0.00 38.69 3.07
8724 9760 1.303888 AGCCCTTGCCAGTCATGTG 60.304 57.895 0.00 0.00 38.69 3.21
8728 9764 1.812571 CCCTTGCCAGTCATGTGTTAC 59.187 52.381 0.00 0.00 0.00 2.50
8740 9776 5.992217 AGTCATGTGTTACCTGTTTTCTCTC 59.008 40.000 0.00 0.00 0.00 3.20
8748 9784 3.555966 ACCTGTTTTCTCTCCCTTTGTG 58.444 45.455 0.00 0.00 0.00 3.33
8798 9847 5.046910 AGCCGTTTATCTTCATGTTTGTG 57.953 39.130 0.00 0.00 0.00 3.33
8799 9848 3.608073 GCCGTTTATCTTCATGTTTGTGC 59.392 43.478 0.00 0.00 0.00 4.57
8800 9849 4.165779 CCGTTTATCTTCATGTTTGTGCC 58.834 43.478 0.00 0.00 0.00 5.01
8822 10572 1.506262 GCGGGTTGCAATGAATCGT 59.494 52.632 0.59 0.00 45.45 3.73
8823 10573 0.109319 GCGGGTTGCAATGAATCGTT 60.109 50.000 0.59 0.00 45.45 3.85
8824 10574 1.616620 CGGGTTGCAATGAATCGTTG 58.383 50.000 10.65 10.65 33.92 4.10
8825 10575 1.198867 CGGGTTGCAATGAATCGTTGA 59.801 47.619 18.46 1.90 32.66 3.18
8826 10576 2.595386 GGGTTGCAATGAATCGTTGAC 58.405 47.619 18.46 8.61 32.66 3.18
8828 10578 2.228822 GGTTGCAATGAATCGTTGACCT 59.771 45.455 18.46 0.00 32.66 3.85
8829 10579 3.492313 GTTGCAATGAATCGTTGACCTC 58.508 45.455 18.46 1.98 32.66 3.85
8835 10737 3.744238 TGAATCGTTGACCTCTTCACA 57.256 42.857 0.00 0.00 32.26 3.58
8840 10742 2.093394 TCGTTGACCTCTTCACACCAAA 60.093 45.455 0.00 0.00 32.26 3.28
8860 10762 3.071837 TCCCTCCGCGTGCATACA 61.072 61.111 4.92 0.00 0.00 2.29
8863 10765 0.667487 CCCTCCGCGTGCATACATAG 60.667 60.000 4.92 0.00 0.00 2.23
8881 10809 5.926663 ACATAGATGCTCATGTTCACTCAT 58.073 37.500 0.00 0.00 31.32 2.90
8887 10815 2.938314 GCTCATGTTCACTCATCAGGCA 60.938 50.000 0.00 0.00 0.00 4.75
8890 10818 1.511850 TGTTCACTCATCAGGCAACG 58.488 50.000 0.00 0.00 46.39 4.10
8916 10853 5.458126 GGAACTATTAATCAACGACCGAGAC 59.542 44.000 0.00 0.00 0.00 3.36
8930 10867 1.906824 GAGACCTGGACACCGACCA 60.907 63.158 0.00 0.00 35.96 4.02
8937 10874 4.699522 GACACCGACCACAGGGCC 62.700 72.222 0.00 0.00 37.90 5.80
8958 10895 4.873129 CCGCCATGGACTCGTCGG 62.873 72.222 18.40 14.10 42.00 4.79
9065 11014 0.467384 CGCTCATCTTCCTCCACCAT 59.533 55.000 0.00 0.00 0.00 3.55
9107 11062 4.086178 CTCAGCGGTCGTCGTCGT 62.086 66.667 1.33 0.00 41.72 4.34
9108 11063 3.978867 CTCAGCGGTCGTCGTCGTC 62.979 68.421 1.33 0.00 41.72 4.20
9407 11382 1.740664 CGTCGACGAGTCTCCCTCA 60.741 63.158 33.35 0.00 40.48 3.86
9415 11390 0.676151 GAGTCTCCCTCACGTACCGT 60.676 60.000 0.00 0.00 42.36 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.734465 GACATCCTTGAAGCGGAAGTG 59.266 52.381 0.00 0.00 33.06 3.16
30 31 2.035961 GCGTAACAGATGCTATGAGGGA 59.964 50.000 0.00 0.00 37.09 4.20
32 33 2.054363 CGCGTAACAGATGCTATGAGG 58.946 52.381 0.00 0.00 37.99 3.86
33 34 1.453524 GCGCGTAACAGATGCTATGAG 59.546 52.381 8.43 0.00 37.99 2.90
41 42 2.736682 GCAACCGCGCGTAACAGAT 61.737 57.895 29.95 4.29 0.00 2.90
44 45 4.003011 GTGCAACCGCGCGTAACA 62.003 61.111 29.95 17.88 42.97 2.41
53 54 2.719798 CTTCTCAACAAAGTGCAACCG 58.280 47.619 0.00 0.00 37.80 4.44
62 63 4.016444 ACTTGGTCAAGCTTCTCAACAAA 58.984 39.130 10.31 0.00 41.99 2.83
65 66 2.291741 CCACTTGGTCAAGCTTCTCAAC 59.708 50.000 10.31 0.00 41.99 3.18
66 67 2.575532 CCACTTGGTCAAGCTTCTCAA 58.424 47.619 10.31 0.69 41.99 3.02
67 68 1.815408 GCCACTTGGTCAAGCTTCTCA 60.815 52.381 10.31 0.00 41.99 3.27
68 69 0.877743 GCCACTTGGTCAAGCTTCTC 59.122 55.000 10.31 0.00 41.99 2.87
76 77 1.761174 GGAGGAAGCCACTTGGTCA 59.239 57.895 0.00 0.00 37.57 4.02
77 78 1.376037 CGGAGGAAGCCACTTGGTC 60.376 63.158 0.00 0.00 37.57 4.02
78 79 2.750350 CGGAGGAAGCCACTTGGT 59.250 61.111 0.00 0.00 37.57 3.67
92 93 0.323629 ATCTTTTCACTTCCGCCGGA 59.676 50.000 5.05 0.00 0.00 5.14
95 96 1.740025 CAGGATCTTTTCACTTCCGCC 59.260 52.381 0.00 0.00 33.35 6.13
97 98 5.689383 TTTTCAGGATCTTTTCACTTCCG 57.311 39.130 0.00 0.00 33.35 4.30
122 123 8.630054 AAAGGCTTAATAACTATGTGTGTTCA 57.370 30.769 0.00 0.00 0.00 3.18
125 126 7.553044 GGAGAAAGGCTTAATAACTATGTGTGT 59.447 37.037 0.00 0.00 0.00 3.72
145 146 1.623811 CGGAGGTGAAGGAAGGAGAAA 59.376 52.381 0.00 0.00 0.00 2.52
161 162 0.466124 GGAAGGAAGATGGGACGGAG 59.534 60.000 0.00 0.00 0.00 4.63
173 174 6.131972 AGAATCAAGATGTTGAGGAAGGAA 57.868 37.500 11.32 0.00 45.96 3.36
177 178 7.613022 AGCAAATAGAATCAAGATGTTGAGGAA 59.387 33.333 11.32 0.00 45.96 3.36
182 183 9.635520 AAGAAAGCAAATAGAATCAAGATGTTG 57.364 29.630 0.00 0.00 34.67 3.33
197 198 0.804989 CGGCGAGGAAGAAAGCAAAT 59.195 50.000 0.00 0.00 0.00 2.32
236 237 4.683334 GGGAACAAGTGCACGCGC 62.683 66.667 12.01 0.00 39.24 6.86
260 261 8.978874 AACAATTATCACATGTATCTTGGCTA 57.021 30.769 0.00 0.00 0.00 3.93
266 267 7.886629 AGCCAAACAATTATCACATGTATCT 57.113 32.000 0.00 0.00 0.00 1.98
269 270 7.095910 CCAAAGCCAAACAATTATCACATGTA 58.904 34.615 0.00 0.00 0.00 2.29
287 288 2.959030 AGAGAAGGAAAACACCAAAGCC 59.041 45.455 0.00 0.00 0.00 4.35
299 300 2.907042 GGAGGACCTTGAAGAGAAGGAA 59.093 50.000 6.31 0.00 44.87 3.36
305 306 4.406972 TGTATGATGGAGGACCTTGAAGAG 59.593 45.833 0.00 0.00 37.04 2.85
311 312 4.560739 TGAGATGTATGATGGAGGACCTT 58.439 43.478 0.00 0.00 37.04 3.50
323 324 0.678395 AGGCGAGGCTGAGATGTATG 59.322 55.000 0.00 0.00 0.00 2.39
365 366 1.758440 GATGCATGAGGGCTCCGGTA 61.758 60.000 2.46 0.00 34.04 4.02
383 384 0.452184 CGCGCCAGAGTCTAGAAAGA 59.548 55.000 0.00 0.00 0.00 2.52
386 387 1.595993 AAGCGCGCCAGAGTCTAGAA 61.596 55.000 30.33 0.00 0.00 2.10
389 390 1.153823 GAAAGCGCGCCAGAGTCTA 60.154 57.895 30.33 0.00 0.00 2.59
392 393 2.029844 GAAGAAAGCGCGCCAGAGT 61.030 57.895 30.33 11.15 0.00 3.24
396 397 3.049674 CCTGAAGAAAGCGCGCCA 61.050 61.111 30.33 16.57 0.00 5.69
398 399 4.801221 CGCCTGAAGAAAGCGCGC 62.801 66.667 26.66 26.66 43.72 6.86
416 417 4.475135 GCGGGGGAGTTGGAGAGC 62.475 72.222 0.00 0.00 0.00 4.09
443 444 1.348775 GGAGGATGAGGAAGTGGGGG 61.349 65.000 0.00 0.00 0.00 5.40
458 459 4.087892 CGGAGTGTGGCTGGGAGG 62.088 72.222 0.00 0.00 0.00 4.30
472 473 1.736645 GTAGCTTCTGCGTTGCGGA 60.737 57.895 0.00 0.00 42.66 5.54
491 492 3.181459 GCTATTTGGAGGGAAGAGGAGAC 60.181 52.174 0.00 0.00 0.00 3.36
497 498 5.163088 GGAATAAGGCTATTTGGAGGGAAGA 60.163 44.000 0.00 0.00 0.00 2.87
515 516 2.381961 AGTTCAAGGGGCTTGGGAATAA 59.618 45.455 0.00 0.00 41.33 1.40
517 518 0.786435 AGTTCAAGGGGCTTGGGAAT 59.214 50.000 0.00 0.00 41.33 3.01
518 519 0.560688 AAGTTCAAGGGGCTTGGGAA 59.439 50.000 0.00 0.00 41.33 3.97
524 525 2.034221 GCCGAAGTTCAAGGGGCT 59.966 61.111 11.11 0.00 40.59 5.19
533 534 1.675641 GGGATGCAGTGCCGAAGTT 60.676 57.895 13.72 0.00 0.00 2.66
536 537 2.268920 GAGGGATGCAGTGCCGAA 59.731 61.111 13.72 0.00 44.37 4.30
539 540 1.919600 AAGAGGAGGGATGCAGTGCC 61.920 60.000 13.72 0.00 38.92 5.01
545 546 0.465278 GGCTGAAAGAGGAGGGATGC 60.465 60.000 0.00 0.00 34.07 3.91
548 549 1.201429 GGTGGCTGAAAGAGGAGGGA 61.201 60.000 0.00 0.00 34.07 4.20
596 597 4.496336 AGCAGAAGGATGGCGGGC 62.496 66.667 0.00 0.00 0.00 6.13
608 609 0.319728 GCACACAAGAGGAGAGCAGA 59.680 55.000 0.00 0.00 0.00 4.26
611 612 1.265365 GTTTGCACACAAGAGGAGAGC 59.735 52.381 0.00 0.00 37.04 4.09
613 614 4.623932 ATAGTTTGCACACAAGAGGAGA 57.376 40.909 5.67 0.00 37.04 3.71
614 615 5.934625 AGTAATAGTTTGCACACAAGAGGAG 59.065 40.000 5.67 0.00 37.04 3.69
615 616 5.700832 CAGTAATAGTTTGCACACAAGAGGA 59.299 40.000 5.67 0.00 37.04 3.71
617 618 5.470098 ACCAGTAATAGTTTGCACACAAGAG 59.530 40.000 5.67 0.00 37.04 2.85
618 619 5.373222 ACCAGTAATAGTTTGCACACAAGA 58.627 37.500 5.67 0.00 37.04 3.02
623 624 6.941857 TCATAGACCAGTAATAGTTTGCACA 58.058 36.000 0.00 0.00 0.00 4.57
628 629 7.834881 TCGGATCATAGACCAGTAATAGTTT 57.165 36.000 0.00 0.00 0.00 2.66
632 633 6.351033 GGCATTCGGATCATAGACCAGTAATA 60.351 42.308 0.00 0.00 0.00 0.98
635 636 3.258372 GGCATTCGGATCATAGACCAGTA 59.742 47.826 0.00 0.00 0.00 2.74
643 644 1.546029 CTCCTCGGCATTCGGATCATA 59.454 52.381 0.00 0.00 39.77 2.15
650 651 2.279784 GGAGCTCCTCGGCATTCG 60.280 66.667 26.25 0.00 40.90 3.34
673 674 1.230324 GTTCCCTGAGTTCACAGTGC 58.770 55.000 0.00 0.00 36.30 4.40
674 675 1.140852 TGGTTCCCTGAGTTCACAGTG 59.859 52.381 0.00 0.00 36.30 3.66
764 765 1.689273 GTGGCCCCACAATACAAAACA 59.311 47.619 12.42 0.00 45.53 2.83
836 838 7.657023 TCTTACCTTCTGTTAGAATCCTACC 57.343 40.000 0.00 0.00 33.13 3.18
923 926 3.137385 TTGGGAAGGCAGCAGCAGT 62.137 57.895 2.65 0.00 44.61 4.40
930 933 2.035312 AGCAGCTTGGGAAGGCAG 59.965 61.111 0.00 0.00 0.00 4.85
931 934 2.034687 GAGCAGCTTGGGAAGGCA 59.965 61.111 0.00 0.00 0.00 4.75
932 935 2.753446 GGAGCAGCTTGGGAAGGC 60.753 66.667 0.00 0.00 0.00 4.35
933 936 1.378250 CAGGAGCAGCTTGGGAAGG 60.378 63.158 0.00 0.00 0.00 3.46
934 937 2.045131 GCAGGAGCAGCTTGGGAAG 61.045 63.158 0.00 0.00 41.58 3.46
935 938 2.034687 GCAGGAGCAGCTTGGGAA 59.965 61.111 0.00 0.00 41.58 3.97
936 939 4.039092 GGCAGGAGCAGCTTGGGA 62.039 66.667 0.00 0.00 44.61 4.37
937 940 4.044439 AGGCAGGAGCAGCTTGGG 62.044 66.667 0.00 0.00 44.61 4.12
938 941 2.750637 CAGGCAGGAGCAGCTTGG 60.751 66.667 0.00 0.00 44.61 3.61
939 942 3.441290 GCAGGCAGGAGCAGCTTG 61.441 66.667 0.00 0.00 44.61 4.01
995 1018 1.411977 CTGATCTTGCCTCCATCGTCT 59.588 52.381 0.00 0.00 0.00 4.18
996 1019 1.410517 TCTGATCTTGCCTCCATCGTC 59.589 52.381 0.00 0.00 0.00 4.20
1012 1035 2.938314 GCATGCACTCACCAAGATCTGA 60.938 50.000 14.21 0.00 0.00 3.27
1053 1076 1.342819 CCCCAGACCTCAGATTCGATC 59.657 57.143 0.00 0.00 0.00 3.69
1427 1450 2.690881 CTCCGGGGTGGGGATGAA 60.691 66.667 0.00 0.00 43.10 2.57
1473 1496 1.068121 CCCCTTGGTGGACTTCTTCT 58.932 55.000 0.00 0.00 38.35 2.85
1474 1497 0.038310 CCCCCTTGGTGGACTTCTTC 59.962 60.000 0.00 0.00 38.35 2.87
1591 1614 1.476471 CCATCTCCAACAGATCCAGCC 60.476 57.143 0.00 0.00 40.20 4.85
1630 1653 2.750948 TCGAAGTCTAACTTGCGCTTT 58.249 42.857 9.73 1.43 38.80 3.51
1737 1760 4.687458 TTCTTTTTCTTCGTCTTCGTCG 57.313 40.909 0.00 0.00 38.33 5.12
1768 1791 0.609131 AAGGAACAATGGCCCAGTCG 60.609 55.000 0.00 0.00 0.00 4.18
1777 1800 4.676196 GCAGCATTCTGGTAAGGAACAATG 60.676 45.833 0.00 0.00 40.65 2.82
1778 1801 3.445096 GCAGCATTCTGGTAAGGAACAAT 59.555 43.478 0.00 0.00 40.65 2.71
1780 1803 2.436417 GCAGCATTCTGGTAAGGAACA 58.564 47.619 0.00 0.00 40.65 3.18
1813 1836 1.066071 GGGACCAAAGTAGAGCAGGAC 60.066 57.143 0.00 0.00 0.00 3.85
1816 1839 3.356529 AATGGGACCAAAGTAGAGCAG 57.643 47.619 0.00 0.00 0.00 4.24
1850 1873 0.672401 TTCGAGTGATTTCCGTGGCC 60.672 55.000 0.00 0.00 0.00 5.36
1851 1874 1.327764 GATTCGAGTGATTTCCGTGGC 59.672 52.381 0.00 0.00 0.00 5.01
1855 1878 3.484229 GCACTTGATTCGAGTGATTTCCG 60.484 47.826 30.14 8.98 45.84 4.30
1897 1920 2.738314 CACTCGCAATGTCTCAACATCA 59.262 45.455 0.00 0.00 45.48 3.07
1997 2020 2.702592 TAATCCCGCCGAGTTTCATT 57.297 45.000 0.00 0.00 0.00 2.57
1998 2021 2.930826 ATAATCCCGCCGAGTTTCAT 57.069 45.000 0.00 0.00 0.00 2.57
2020 2043 4.165779 CAATAAACCAATCCACACGCTTC 58.834 43.478 0.00 0.00 0.00 3.86
2025 2048 3.498082 GTCGCAATAAACCAATCCACAC 58.502 45.455 0.00 0.00 0.00 3.82
2034 2057 3.002102 TCCTTTACGGTCGCAATAAACC 58.998 45.455 0.00 0.00 0.00 3.27
2084 2107 4.630940 GCAGAAATGAAGACAGAGAGAAGG 59.369 45.833 0.00 0.00 0.00 3.46
2305 2329 5.034852 TGTTTCTCCACAGAAGACATCAA 57.965 39.130 0.00 0.00 39.90 2.57
2391 2837 4.154195 GCCACTATCAAATACCTAATGCCG 59.846 45.833 0.00 0.00 0.00 5.69
2509 2960 7.881142 TCACGAAATATTCATTTTCACCTGTT 58.119 30.769 0.00 0.00 34.44 3.16
2510 2961 7.447374 TCACGAAATATTCATTTTCACCTGT 57.553 32.000 0.00 0.00 34.44 4.00
3069 3522 3.072211 GTTTCCTTTTACCTCCTCACCG 58.928 50.000 0.00 0.00 0.00 4.94
3159 3612 5.108187 TCAAAAGATCATCCTTCTCCCAG 57.892 43.478 0.00 0.00 0.00 4.45
3572 4031 9.590451 AAATTTTGCTGACAGTTATTATGGATG 57.410 29.630 3.99 0.00 0.00 3.51
3589 4048 8.359642 TGAAAGTCTGCTTACATAAATTTTGCT 58.640 29.630 0.00 0.00 33.95 3.91
3590 4049 8.519492 TGAAAGTCTGCTTACATAAATTTTGC 57.481 30.769 0.00 0.00 33.95 3.68
3750 4301 8.408043 TGACAGTTCATACTTCCATCATTTTT 57.592 30.769 0.00 0.00 30.26 1.94
3880 4434 6.348132 CCGCTGTTTAAAATAGTGTGATGTGA 60.348 38.462 11.24 0.00 0.00 3.58
3881 4435 5.794945 CCGCTGTTTAAAATAGTGTGATGTG 59.205 40.000 11.24 0.00 0.00 3.21
3882 4436 5.472137 ACCGCTGTTTAAAATAGTGTGATGT 59.528 36.000 11.24 2.75 0.00 3.06
3883 4437 5.938322 ACCGCTGTTTAAAATAGTGTGATG 58.062 37.500 11.24 2.30 0.00 3.07
3884 4438 6.569179 AACCGCTGTTTAAAATAGTGTGAT 57.431 33.333 11.24 0.11 0.00 3.06
3885 4439 6.380095 AAACCGCTGTTTAAAATAGTGTGA 57.620 33.333 4.25 0.00 42.79 3.58
3897 4451 3.057174 TGTTTCACTCAAAACCGCTGTTT 60.057 39.130 0.00 0.00 46.50 2.83
4858 5424 4.265073 AGAACTGGGTTGTCAATCATAGC 58.735 43.478 0.00 0.00 0.00 2.97
4875 5441 7.021998 AGAAAGGAAAGTAGGCATAAGAACT 57.978 36.000 0.00 0.00 0.00 3.01
4931 5497 6.720288 AGTACATAGTCGAGGCCATAAGTAAT 59.280 38.462 5.01 0.00 0.00 1.89
5452 6028 0.535797 AGGGGTGCGAGTTAGTTAGC 59.464 55.000 0.00 0.00 0.00 3.09
5453 6029 1.549170 ACAGGGGTGCGAGTTAGTTAG 59.451 52.381 0.00 0.00 0.00 2.34
5454 6030 1.547372 GACAGGGGTGCGAGTTAGTTA 59.453 52.381 0.00 0.00 0.00 2.24
5455 6031 0.320697 GACAGGGGTGCGAGTTAGTT 59.679 55.000 0.00 0.00 0.00 2.24
5456 6032 1.542187 GGACAGGGGTGCGAGTTAGT 61.542 60.000 0.00 0.00 0.00 2.24
5485 6061 4.510167 AGGACTGGAATATCACCAAAGG 57.490 45.455 3.72 0.00 36.95 3.11
5593 6169 6.475727 CCAATGTCACAATACTACCTAGTTCG 59.524 42.308 0.00 0.00 37.73 3.95
5813 6389 6.607689 CAAATGTTAGTATTCCGTGCTTCAA 58.392 36.000 0.00 0.00 0.00 2.69
5826 6402 7.880713 TGGTCTGATAACAAGCAAATGTTAGTA 59.119 33.333 13.02 6.14 45.91 1.82
5828 6404 7.144722 TGGTCTGATAACAAGCAAATGTTAG 57.855 36.000 13.02 4.74 45.91 2.34
5941 6517 5.817296 TCTTCGATTTGATGACTTGGTATGG 59.183 40.000 0.00 0.00 0.00 2.74
5945 6521 5.335191 GCTTTCTTCGATTTGATGACTTGGT 60.335 40.000 0.00 0.00 31.07 3.67
6018 6609 0.916086 TATTCGGGACTTGGTGGCAT 59.084 50.000 0.00 0.00 0.00 4.40
6355 6946 2.101582 GTCTGGGAGCACATACCTGTAG 59.898 54.545 0.00 0.00 33.14 2.74
6587 7186 1.171308 CCCTTCACCATGCAGTTCTG 58.829 55.000 0.00 0.00 0.00 3.02
6604 7203 2.489938 TACTCACCAGAATTGTGCCC 57.510 50.000 0.00 0.00 33.71 5.36
6835 7460 3.092301 ACCCCTTAAAGATCAGCAAAGC 58.908 45.455 0.00 0.00 0.00 3.51
7039 7803 9.290988 TCAATAATTTGAACTTACTGCACCTTA 57.709 29.630 0.00 0.00 38.90 2.69
7050 7814 8.621286 AGTGACGAAACTCAATAATTTGAACTT 58.379 29.630 0.00 0.00 41.22 2.66
7080 7844 7.255381 GCTTTTAGTATGAGATGGTTGATGCAT 60.255 37.037 0.00 0.00 0.00 3.96
7161 8179 3.278574 TGTGCTAGATTTGTATGGCCAC 58.721 45.455 8.16 0.00 0.00 5.01
7398 8423 7.864108 ATCATATGTCTGATTTCGGTCAAAA 57.136 32.000 1.90 0.00 31.82 2.44
7406 8431 9.160496 GAGGGTTCATATCATATGTCTGATTTC 57.840 37.037 4.52 0.34 37.13 2.17
7523 8548 2.228822 CCGTTCAATGGGAAGTTTCCTG 59.771 50.000 10.53 2.18 46.72 3.86
7656 8684 3.049708 TGAGTCATCTGCAAAGACCTG 57.950 47.619 8.67 0.00 32.82 4.00
7696 8724 4.452795 CGTTGAGACACTCACTAGAGAAGA 59.547 45.833 0.00 0.00 44.98 2.87
7783 8811 5.635417 TTCAACACATTCACAGTTCAACA 57.365 34.783 0.00 0.00 0.00 3.33
7784 8812 7.063308 ACAATTTCAACACATTCACAGTTCAAC 59.937 33.333 0.00 0.00 0.00 3.18
7794 8824 9.462174 TCATCAGTAAACAATTTCAACACATTC 57.538 29.630 0.00 0.00 0.00 2.67
7808 8838 9.599866 CCAGTTAATATCACTCATCAGTAAACA 57.400 33.333 0.00 0.00 0.00 2.83
7809 8839 8.552034 GCCAGTTAATATCACTCATCAGTAAAC 58.448 37.037 0.00 0.00 0.00 2.01
7810 8840 7.438160 CGCCAGTTAATATCACTCATCAGTAAA 59.562 37.037 0.00 0.00 0.00 2.01
7817 8847 6.406692 AGTACGCCAGTTAATATCACTCAT 57.593 37.500 0.00 0.00 0.00 2.90
7955 8987 7.254590 CGTCCATCCTTTTCAATATCTGAAGAC 60.255 40.741 0.00 0.00 44.84 3.01
7961 8993 5.041191 AGCGTCCATCCTTTTCAATATCT 57.959 39.130 0.00 0.00 0.00 1.98
8100 9132 4.299155 CGTCTCAGCTTCTTTACTTGTGA 58.701 43.478 0.00 0.00 0.00 3.58
8101 9133 3.120854 GCGTCTCAGCTTCTTTACTTGTG 60.121 47.826 0.00 0.00 0.00 3.33
8102 9134 3.060602 GCGTCTCAGCTTCTTTACTTGT 58.939 45.455 0.00 0.00 0.00 3.16
8103 9135 2.091277 CGCGTCTCAGCTTCTTTACTTG 59.909 50.000 0.00 0.00 34.40 3.16
8104 9136 2.030185 TCGCGTCTCAGCTTCTTTACTT 60.030 45.455 5.77 0.00 34.40 2.24
8105 9137 1.540267 TCGCGTCTCAGCTTCTTTACT 59.460 47.619 5.77 0.00 34.40 2.24
8121 9153 0.163788 CAAAGTTACACTGCCTCGCG 59.836 55.000 0.00 0.00 0.00 5.87
8176 9208 2.021457 CTTAATTTGTGGGTAGCGGGG 58.979 52.381 0.00 0.00 0.00 5.73
8214 9246 1.267732 CGATCACATGAGAAAAGGCGC 60.268 52.381 0.00 0.00 0.00 6.53
8218 9250 9.855361 GTATGAAATACGATCACATGAGAAAAG 57.145 33.333 0.00 0.00 40.43 2.27
8246 9279 1.293963 TGCAAGAGATCACAGCACGC 61.294 55.000 6.27 0.00 0.00 5.34
8247 9280 0.720027 CTGCAAGAGATCACAGCACG 59.280 55.000 6.27 0.00 34.07 5.34
8252 9285 4.162888 ACACATATCCTGCAAGAGATCACA 59.837 41.667 0.00 0.00 34.07 3.58
8289 9322 4.609247 GATCTCGTCCGCCGGTCG 62.609 72.222 16.53 16.53 35.73 4.79
8320 9353 2.052237 GGAATGTAATGCGGCGCG 60.052 61.111 28.09 0.00 0.00 6.86
8322 9355 0.943673 TGATGGAATGTAATGCGGCG 59.056 50.000 0.51 0.51 0.00 6.46
8343 9376 1.461127 CTGCCGTCCTCTTTCTTTTCG 59.539 52.381 0.00 0.00 0.00 3.46
8359 9392 2.610433 GCTTTCCTTATGTTTGCTGCC 58.390 47.619 0.00 0.00 0.00 4.85
8400 9433 2.046892 GAAGGCGCCTTCTGCTCA 60.047 61.111 46.69 0.00 46.38 4.26
8432 9465 3.945921 TCAGAGGGAGTAGATGTTACGTG 59.054 47.826 0.00 0.00 0.00 4.49
8434 9467 4.822036 CTCAGAGGGAGTAGATGTTACG 57.178 50.000 0.00 0.00 38.90 3.18
8446 9479 9.537852 TTTGTACTAACTTTATACTCAGAGGGA 57.462 33.333 1.53 0.00 0.00 4.20
8447 9480 9.804758 CTTTGTACTAACTTTATACTCAGAGGG 57.195 37.037 1.53 0.00 0.00 4.30
8465 9498 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
8466 9499 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
8467 9500 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
8469 9502 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
8470 9503 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
8471 9504 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
8472 9505 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
8473 9506 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
8474 9507 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
8476 9509 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
8478 9511 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
8480 9513 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
8481 9514 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
8482 9515 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
8483 9516 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
8484 9517 5.502089 TTTACTCCCTCCGTTCCAAAATA 57.498 39.130 0.00 0.00 0.00 1.40
8485 9518 4.376225 TTTACTCCCTCCGTTCCAAAAT 57.624 40.909 0.00 0.00 0.00 1.82
8486 9519 3.860968 TTTACTCCCTCCGTTCCAAAA 57.139 42.857 0.00 0.00 0.00 2.44
8488 9521 3.585732 AGATTTTACTCCCTCCGTTCCAA 59.414 43.478 0.00 0.00 0.00 3.53
8490 9523 3.908643 AGATTTTACTCCCTCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
8491 9524 6.702282 CAGATTAGATTTTACTCCCTCCGTTC 59.298 42.308 0.00 0.00 0.00 3.95
8493 9526 5.070580 CCAGATTAGATTTTACTCCCTCCGT 59.929 44.000 0.00 0.00 0.00 4.69
8494 9527 5.511545 CCCAGATTAGATTTTACTCCCTCCG 60.512 48.000 0.00 0.00 0.00 4.63
8495 9528 5.221945 CCCCAGATTAGATTTTACTCCCTCC 60.222 48.000 0.00 0.00 0.00 4.30
8497 9530 4.104897 GCCCCAGATTAGATTTTACTCCCT 59.895 45.833 0.00 0.00 0.00 4.20
8498 9531 4.141251 TGCCCCAGATTAGATTTTACTCCC 60.141 45.833 0.00 0.00 0.00 4.30
8500 9533 5.474876 CCATGCCCCAGATTAGATTTTACTC 59.525 44.000 0.00 0.00 0.00 2.59
8502 9535 5.385198 TCCATGCCCCAGATTAGATTTTAC 58.615 41.667 0.00 0.00 0.00 2.01
8503 9536 5.134339 ACTCCATGCCCCAGATTAGATTTTA 59.866 40.000 0.00 0.00 0.00 1.52
8504 9537 4.078980 ACTCCATGCCCCAGATTAGATTTT 60.079 41.667 0.00 0.00 0.00 1.82
8505 9538 3.464833 ACTCCATGCCCCAGATTAGATTT 59.535 43.478 0.00 0.00 0.00 2.17
8506 9539 3.059097 ACTCCATGCCCCAGATTAGATT 58.941 45.455 0.00 0.00 0.00 2.40
8507 9540 2.711174 ACTCCATGCCCCAGATTAGAT 58.289 47.619 0.00 0.00 0.00 1.98
8508 9541 2.196742 ACTCCATGCCCCAGATTAGA 57.803 50.000 0.00 0.00 0.00 2.10
8509 9542 3.242867 TCTACTCCATGCCCCAGATTAG 58.757 50.000 0.00 0.00 0.00 1.73
8510 9543 3.344535 TCTACTCCATGCCCCAGATTA 57.655 47.619 0.00 0.00 0.00 1.75
8511 9544 2.196742 TCTACTCCATGCCCCAGATT 57.803 50.000 0.00 0.00 0.00 2.40
8512 9545 2.429933 ATCTACTCCATGCCCCAGAT 57.570 50.000 0.00 0.00 0.00 2.90
8513 9546 2.050144 GAATCTACTCCATGCCCCAGA 58.950 52.381 0.00 0.00 0.00 3.86
8514 9547 1.270518 CGAATCTACTCCATGCCCCAG 60.271 57.143 0.00 0.00 0.00 4.45
8515 9548 0.758734 CGAATCTACTCCATGCCCCA 59.241 55.000 0.00 0.00 0.00 4.96
8516 9549 1.048601 TCGAATCTACTCCATGCCCC 58.951 55.000 0.00 0.00 0.00 5.80
8517 9550 2.037772 ACATCGAATCTACTCCATGCCC 59.962 50.000 0.00 0.00 0.00 5.36
8518 9551 3.393089 ACATCGAATCTACTCCATGCC 57.607 47.619 0.00 0.00 0.00 4.40
8519 9552 3.059325 GCAACATCGAATCTACTCCATGC 60.059 47.826 0.00 0.00 0.00 4.06
8520 9553 3.496130 GGCAACATCGAATCTACTCCATG 59.504 47.826 0.00 0.00 0.00 3.66
8521 9554 3.389329 AGGCAACATCGAATCTACTCCAT 59.611 43.478 0.00 0.00 41.41 3.41
8522 9555 2.766263 AGGCAACATCGAATCTACTCCA 59.234 45.455 0.00 0.00 41.41 3.86
8523 9556 3.126831 CAGGCAACATCGAATCTACTCC 58.873 50.000 0.00 0.00 41.41 3.85
8524 9557 3.799420 GTCAGGCAACATCGAATCTACTC 59.201 47.826 0.00 0.00 41.41 2.59
8525 9558 3.195610 TGTCAGGCAACATCGAATCTACT 59.804 43.478 0.00 0.00 41.41 2.57
8526 9559 3.307242 GTGTCAGGCAACATCGAATCTAC 59.693 47.826 0.00 0.00 41.41 2.59
8527 9560 3.521560 GTGTCAGGCAACATCGAATCTA 58.478 45.455 0.00 0.00 41.41 1.98
8528 9561 2.350522 GTGTCAGGCAACATCGAATCT 58.649 47.619 0.00 0.00 41.41 2.40
8529 9562 1.398390 GGTGTCAGGCAACATCGAATC 59.602 52.381 0.00 0.00 41.41 2.52
8533 9566 3.168271 CGGTGTCAGGCAACATCG 58.832 61.111 10.58 10.58 46.11 3.84
8564 9597 6.354794 ACTACACTAACCACATTAGCTTCA 57.645 37.500 0.00 0.00 43.76 3.02
8616 9651 3.137533 GCTCCATCCAGCTACATTTCTC 58.862 50.000 0.00 0.00 36.38 2.87
8629 9665 1.300233 CGCTCTAACCGCTCCATCC 60.300 63.158 0.00 0.00 0.00 3.51
8636 9672 0.806102 TCTGCAATCGCTCTAACCGC 60.806 55.000 0.00 0.00 39.64 5.68
8704 9740 1.751927 CATGACTGGCAAGGGCTCC 60.752 63.158 0.00 0.00 40.87 4.70
8722 9758 4.353383 AGGGAGAGAAAACAGGTAACAC 57.647 45.455 0.00 0.00 41.41 3.32
8724 9760 5.008712 CACAAAGGGAGAGAAAACAGGTAAC 59.991 44.000 0.00 0.00 0.00 2.50
8728 9764 3.555966 ACACAAAGGGAGAGAAAACAGG 58.444 45.455 0.00 0.00 0.00 4.00
8740 9776 4.256920 CAGTATGAAGGAGACACAAAGGG 58.743 47.826 0.00 0.00 39.69 3.95
8748 9784 5.689383 TTGTTTTGCAGTATGAAGGAGAC 57.311 39.130 0.00 0.00 39.69 3.36
8812 10562 4.452114 TGTGAAGAGGTCAACGATTCATTG 59.548 41.667 0.00 0.00 38.23 2.82
8822 10572 3.945285 GAGTTTTGGTGTGAAGAGGTCAA 59.055 43.478 0.00 0.00 38.23 3.18
8823 10573 3.541632 GAGTTTTGGTGTGAAGAGGTCA 58.458 45.455 0.00 0.00 0.00 4.02
8824 10574 2.879026 GGAGTTTTGGTGTGAAGAGGTC 59.121 50.000 0.00 0.00 0.00 3.85
8825 10575 2.422945 GGGAGTTTTGGTGTGAAGAGGT 60.423 50.000 0.00 0.00 0.00 3.85
8826 10576 2.158608 AGGGAGTTTTGGTGTGAAGAGG 60.159 50.000 0.00 0.00 0.00 3.69
8828 10578 2.158667 GGAGGGAGTTTTGGTGTGAAGA 60.159 50.000 0.00 0.00 0.00 2.87
8829 10579 2.230660 GGAGGGAGTTTTGGTGTGAAG 58.769 52.381 0.00 0.00 0.00 3.02
8835 10737 2.032071 CGCGGAGGGAGTTTTGGT 59.968 61.111 0.00 0.00 46.37 3.67
8840 10742 2.355986 TATGCACGCGGAGGGAGTT 61.356 57.895 12.47 0.00 46.37 3.01
8860 10762 6.170846 TGATGAGTGAACATGAGCATCTAT 57.829 37.500 0.00 0.00 34.70 1.98
8863 10765 3.560481 CCTGATGAGTGAACATGAGCATC 59.440 47.826 0.00 0.00 31.91 3.91
8868 10796 3.076621 GTTGCCTGATGAGTGAACATGA 58.923 45.455 0.00 0.00 0.00 3.07
8872 10800 0.166814 GCGTTGCCTGATGAGTGAAC 59.833 55.000 0.00 0.00 0.00 3.18
8876 10804 2.434884 CCGCGTTGCCTGATGAGT 60.435 61.111 4.92 0.00 0.00 3.41
8881 10809 0.036765 AATAGTTCCGCGTTGCCTGA 60.037 50.000 4.92 0.00 0.00 3.86
8887 10815 4.032104 GTCGTTGATTAATAGTTCCGCGTT 59.968 41.667 4.92 0.00 0.00 4.84
8890 10818 3.060740 CGGTCGTTGATTAATAGTTCCGC 60.061 47.826 0.00 0.00 0.00 5.54
8916 10853 2.343758 CTGTGGTCGGTGTCCAGG 59.656 66.667 0.00 0.00 35.49 4.45
8939 10876 4.530857 GACGAGTCCATGGCGGGG 62.531 72.222 6.96 0.00 34.36 5.73
8940 10877 4.873129 CGACGAGTCCATGGCGGG 62.873 72.222 6.96 2.75 34.36 6.13
8941 10878 4.873129 CCGACGAGTCCATGGCGG 62.873 72.222 6.96 9.49 0.00 6.13
9013 10962 1.279846 TCATGCACAGCAGGAAGATGA 59.720 47.619 3.68 0.00 46.20 2.92
9091 11046 4.081030 GACGACGACGACCGCTGA 62.081 66.667 15.32 0.00 43.32 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.