Multiple sequence alignment - TraesCS3B01G022700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G022700 chr3B 100.000 3453 0 0 1 3453 9889418 9885966 0.000000e+00 6377.0
1 TraesCS3B01G022700 chr6A 98.953 3057 25 5 399 3453 590675878 590672827 0.000000e+00 5461.0
2 TraesCS3B01G022700 chr7A 97.259 3028 58 8 444 3453 75358418 75361438 0.000000e+00 5108.0
3 TraesCS3B01G022700 chr7A 86.395 147 12 4 630 774 730308140 730308280 1.660000e-33 154.0
4 TraesCS3B01G022700 chr7A 86.395 147 12 4 630 774 730355145 730355285 1.660000e-33 154.0
5 TraesCS3B01G022700 chr7A 81.579 190 25 5 399 579 464231871 464232059 7.720000e-32 148.0
6 TraesCS3B01G022700 chr2A 98.803 2422 25 3 1030 3451 698197702 698195285 0.000000e+00 4309.0
7 TraesCS3B01G022700 chr2A 98.587 566 7 1 400 965 698203980 698203416 0.000000e+00 1000.0
8 TraesCS3B01G022700 chr2A 90.514 506 41 2 2728 3233 737423434 737422936 0.000000e+00 662.0
9 TraesCS3B01G022700 chr2A 92.090 177 13 1 1564 1739 257014163 257014339 7.400000e-62 248.0
10 TraesCS3B01G022700 chr2A 96.875 32 0 1 965 996 698197730 698197700 6.000000e-03 52.8
11 TraesCS3B01G022700 chr7D 91.926 1511 101 16 839 2334 617831456 617829952 0.000000e+00 2095.0
12 TraesCS3B01G022700 chr7D 90.437 1098 75 11 2363 3451 617829956 617828880 0.000000e+00 1419.0
13 TraesCS3B01G022700 chr7D 90.652 813 59 6 839 1648 386517163 386516365 0.000000e+00 1064.0
14 TraesCS3B01G022700 chr7D 92.956 653 40 6 1683 2334 386516365 386515718 0.000000e+00 946.0
15 TraesCS3B01G022700 chr7D 87.398 492 47 7 2363 2846 386515722 386515238 5.040000e-153 551.0
16 TraesCS3B01G022700 chr6D 91.078 538 41 2 2728 3265 337762314 337762844 0.000000e+00 721.0
17 TraesCS3B01G022700 chr6D 93.600 125 7 1 3330 3453 337762845 337762969 5.880000e-43 185.0
18 TraesCS3B01G022700 chr4D 90.538 539 42 4 2728 3265 499724578 499725108 0.000000e+00 704.0
19 TraesCS3B01G022700 chr4D 89.591 538 47 4 2728 3265 508478467 508478995 0.000000e+00 675.0
20 TraesCS3B01G022700 chr4D 95.041 121 5 1 3334 3453 508479000 508479120 4.550000e-44 189.0
21 TraesCS3B01G022700 chr4D 94.262 122 6 1 3333 3453 499725112 499725233 5.880000e-43 185.0
22 TraesCS3B01G022700 chr2D 89.962 528 46 3 2737 3264 331546292 331545772 0.000000e+00 675.0
23 TraesCS3B01G022700 chr2D 89.912 456 42 4 1290 1742 207480309 207479855 4.970000e-163 584.0
24 TraesCS3B01G022700 chr3D 81.429 420 37 21 9 390 7573496 7573080 4.330000e-79 305.0
25 TraesCS3B01G022700 chr5D 89.222 167 16 2 1037 1201 238665957 238666123 1.260000e-49 207.0
26 TraesCS3B01G022700 chr5A 93.600 125 7 1 3330 3453 692544815 692544939 5.880000e-43 185.0
27 TraesCS3B01G022700 chr5A 93.600 125 7 1 3330 3453 692551384 692551508 5.880000e-43 185.0
28 TraesCS3B01G022700 chr5A 81.714 175 23 4 414 579 439835483 439835309 1.670000e-28 137.0
29 TraesCS3B01G022700 chr6B 82.738 168 26 3 414 579 232747232 232747398 2.780000e-31 147.0
30 TraesCS3B01G022700 chr6B 78.218 202 36 6 385 582 54078014 54078211 4.680000e-24 122.0
31 TraesCS3B01G022700 chr6B 83.761 117 17 2 399 514 628475 628590 3.640000e-20 110.0
32 TraesCS3B01G022700 chr4B 81.622 185 25 3 404 579 1761496 1761680 9.990000e-31 145.0
33 TraesCS3B01G022700 chr4B 80.263 152 26 4 398 547 657159068 657158919 1.010000e-20 111.0
34 TraesCS3B01G022700 chr1B 83.553 152 23 2 397 547 646746059 646746209 1.290000e-29 141.0
35 TraesCS3B01G022700 chr1B 85.124 121 14 3 395 513 289306098 289305980 1.680000e-23 121.0
36 TraesCS3B01G022700 chrUn 82.353 170 21 4 419 579 372799598 372799767 4.650000e-29 139.0
37 TraesCS3B01G022700 chr3A 82.353 170 21 4 419 579 95548228 95548059 4.650000e-29 139.0
38 TraesCS3B01G022700 chr5B 83.221 149 24 1 399 547 237819589 237819442 6.010000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G022700 chr3B 9885966 9889418 3452 True 6377.000000 6377 100.000000 1 3453 1 chr3B.!!$R1 3452
1 TraesCS3B01G022700 chr6A 590672827 590675878 3051 True 5461.000000 5461 98.953000 399 3453 1 chr6A.!!$R1 3054
2 TraesCS3B01G022700 chr7A 75358418 75361438 3020 False 5108.000000 5108 97.259000 444 3453 1 chr7A.!!$F1 3009
3 TraesCS3B01G022700 chr2A 698195285 698197730 2445 True 2180.900000 4309 97.839000 965 3451 2 chr2A.!!$R3 2486
4 TraesCS3B01G022700 chr2A 698203416 698203980 564 True 1000.000000 1000 98.587000 400 965 1 chr2A.!!$R1 565
5 TraesCS3B01G022700 chr7D 617828880 617831456 2576 True 1757.000000 2095 91.181500 839 3451 2 chr7D.!!$R2 2612
6 TraesCS3B01G022700 chr7D 386515238 386517163 1925 True 853.666667 1064 90.335333 839 2846 3 chr7D.!!$R1 2007
7 TraesCS3B01G022700 chr6D 337762314 337762969 655 False 453.000000 721 92.339000 2728 3453 2 chr6D.!!$F1 725
8 TraesCS3B01G022700 chr4D 499724578 499725233 655 False 444.500000 704 92.400000 2728 3453 2 chr4D.!!$F1 725
9 TraesCS3B01G022700 chr4D 508478467 508479120 653 False 432.000000 675 92.316000 2728 3453 2 chr4D.!!$F2 725
10 TraesCS3B01G022700 chr2D 331545772 331546292 520 True 675.000000 675 89.962000 2737 3264 1 chr2D.!!$R2 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 102 0.032678 AAGTGTCGTGGAGCTCTGTG 59.967 55.0 14.64 3.48 0.00 3.66 F
341 342 0.174389 CCGTCTGCACATACTCTGCT 59.826 55.0 0.00 0.00 35.53 4.24 F
347 348 0.375106 GCACATACTCTGCTTTCGCC 59.625 55.0 0.00 0.00 34.43 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2003 2027 2.568509 AGAAATTGACCAAAGCCATGGG 59.431 45.455 15.13 0.0 45.18 4.00 R
2067 2091 6.696148 GTGTCAGGTTCTATACTGAATTACGG 59.304 42.308 0.00 0.0 44.53 4.02 R
3120 3161 1.686052 GGTTTTCATGTTGGGCAGACA 59.314 47.619 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.041740 GTAGTGACAAGTATGGCGATCA 57.958 45.455 0.00 0.00 37.40 2.92
22 23 3.610040 AGTGACAAGTATGGCGATCAA 57.390 42.857 0.00 0.00 37.40 2.57
23 24 3.525537 AGTGACAAGTATGGCGATCAAG 58.474 45.455 0.00 0.00 37.40 3.02
24 25 3.195610 AGTGACAAGTATGGCGATCAAGA 59.804 43.478 0.00 0.00 37.40 3.02
25 26 3.307242 GTGACAAGTATGGCGATCAAGAC 59.693 47.826 0.00 0.00 37.40 3.01
26 27 3.195610 TGACAAGTATGGCGATCAAGACT 59.804 43.478 0.00 0.00 37.40 3.24
27 28 3.525537 ACAAGTATGGCGATCAAGACTG 58.474 45.455 0.00 0.00 0.00 3.51
28 29 2.868583 CAAGTATGGCGATCAAGACTGG 59.131 50.000 0.00 0.00 0.00 4.00
29 30 2.388735 AGTATGGCGATCAAGACTGGA 58.611 47.619 0.00 0.00 0.00 3.86
30 31 2.766263 AGTATGGCGATCAAGACTGGAA 59.234 45.455 0.00 0.00 0.00 3.53
31 32 2.322355 ATGGCGATCAAGACTGGAAG 57.678 50.000 0.00 0.00 42.29 3.46
32 33 1.266178 TGGCGATCAAGACTGGAAGA 58.734 50.000 0.00 0.00 37.43 2.87
33 34 1.623311 TGGCGATCAAGACTGGAAGAA 59.377 47.619 0.00 0.00 37.43 2.52
34 35 2.275318 GGCGATCAAGACTGGAAGAAG 58.725 52.381 0.00 0.00 37.43 2.85
35 36 2.275318 GCGATCAAGACTGGAAGAAGG 58.725 52.381 0.00 0.00 37.43 3.46
36 37 2.354203 GCGATCAAGACTGGAAGAAGGT 60.354 50.000 0.00 0.00 37.43 3.50
37 38 3.257393 CGATCAAGACTGGAAGAAGGTG 58.743 50.000 0.00 0.00 37.43 4.00
38 39 3.604582 GATCAAGACTGGAAGAAGGTGG 58.395 50.000 0.00 0.00 37.43 4.61
39 40 2.408565 TCAAGACTGGAAGAAGGTGGT 58.591 47.619 0.00 0.00 37.43 4.16
40 41 2.777692 TCAAGACTGGAAGAAGGTGGTT 59.222 45.455 0.00 0.00 37.43 3.67
41 42 3.202151 TCAAGACTGGAAGAAGGTGGTTT 59.798 43.478 0.00 0.00 37.43 3.27
42 43 3.214696 AGACTGGAAGAAGGTGGTTTG 57.785 47.619 0.00 0.00 37.43 2.93
43 44 1.609072 GACTGGAAGAAGGTGGTTTGC 59.391 52.381 0.00 0.00 37.43 3.68
44 45 0.961753 CTGGAAGAAGGTGGTTTGCC 59.038 55.000 0.00 0.00 34.07 4.52
45 46 0.260230 TGGAAGAAGGTGGTTTGCCA 59.740 50.000 0.00 0.00 43.73 4.92
46 47 3.082725 CTGGAAGAAGGTGGTTTGCCAT 61.083 50.000 0.00 0.00 41.92 4.40
47 48 5.174120 CTGGAAGAAGGTGGTTTGCCATG 62.174 52.174 0.00 0.00 41.92 3.66
53 54 4.100479 TGGTTTGCCATGGCTCTG 57.900 55.556 35.53 0.00 40.46 3.35
54 55 1.153524 TGGTTTGCCATGGCTCTGT 59.846 52.632 35.53 0.00 40.46 3.41
55 56 0.469705 TGGTTTGCCATGGCTCTGTT 60.470 50.000 35.53 0.00 40.46 3.16
56 57 0.681175 GGTTTGCCATGGCTCTGTTT 59.319 50.000 35.53 0.00 42.51 2.83
57 58 1.070601 GGTTTGCCATGGCTCTGTTTT 59.929 47.619 35.53 0.00 42.51 2.43
58 59 2.485302 GGTTTGCCATGGCTCTGTTTTT 60.485 45.455 35.53 0.00 42.51 1.94
59 60 2.802247 GTTTGCCATGGCTCTGTTTTTC 59.198 45.455 35.53 12.71 42.51 2.29
60 61 1.999648 TGCCATGGCTCTGTTTTTCT 58.000 45.000 35.53 0.00 42.51 2.52
61 62 2.318908 TGCCATGGCTCTGTTTTTCTT 58.681 42.857 35.53 0.00 42.51 2.52
62 63 2.699846 TGCCATGGCTCTGTTTTTCTTT 59.300 40.909 35.53 0.00 42.51 2.52
63 64 3.134442 TGCCATGGCTCTGTTTTTCTTTT 59.866 39.130 35.53 0.00 42.51 2.27
64 65 3.742882 GCCATGGCTCTGTTTTTCTTTTC 59.257 43.478 29.98 0.00 38.26 2.29
65 66 4.502087 GCCATGGCTCTGTTTTTCTTTTCT 60.502 41.667 29.98 0.00 38.26 2.52
66 67 4.986659 CCATGGCTCTGTTTTTCTTTTCTG 59.013 41.667 0.00 0.00 0.00 3.02
67 68 4.045636 TGGCTCTGTTTTTCTTTTCTGC 57.954 40.909 0.00 0.00 0.00 4.26
68 69 3.045688 GGCTCTGTTTTTCTTTTCTGCG 58.954 45.455 0.00 0.00 0.00 5.18
69 70 2.469147 GCTCTGTTTTTCTTTTCTGCGC 59.531 45.455 0.00 0.00 0.00 6.09
70 71 3.694734 CTCTGTTTTTCTTTTCTGCGCA 58.305 40.909 10.98 10.98 0.00 6.09
71 72 3.694734 TCTGTTTTTCTTTTCTGCGCAG 58.305 40.909 31.53 31.53 0.00 5.18
87 88 2.544685 CGCAGCTGCTATCTAAAGTGT 58.455 47.619 34.22 0.00 39.32 3.55
88 89 2.537625 CGCAGCTGCTATCTAAAGTGTC 59.462 50.000 34.22 2.64 39.32 3.67
89 90 2.537625 GCAGCTGCTATCTAAAGTGTCG 59.462 50.000 31.33 0.00 38.21 4.35
90 91 3.775202 CAGCTGCTATCTAAAGTGTCGT 58.225 45.455 0.00 0.00 0.00 4.34
91 92 3.549471 CAGCTGCTATCTAAAGTGTCGTG 59.451 47.826 0.00 0.00 0.00 4.35
92 93 2.860735 GCTGCTATCTAAAGTGTCGTGG 59.139 50.000 0.00 0.00 0.00 4.94
93 94 3.428999 GCTGCTATCTAAAGTGTCGTGGA 60.429 47.826 0.00 0.00 0.00 4.02
94 95 4.355437 CTGCTATCTAAAGTGTCGTGGAG 58.645 47.826 0.00 0.00 0.00 3.86
95 96 3.117046 GCTATCTAAAGTGTCGTGGAGC 58.883 50.000 0.00 0.00 0.00 4.70
96 97 3.181485 GCTATCTAAAGTGTCGTGGAGCT 60.181 47.826 0.00 0.00 0.00 4.09
97 98 3.512033 ATCTAAAGTGTCGTGGAGCTC 57.488 47.619 4.71 4.71 0.00 4.09
98 99 2.515854 TCTAAAGTGTCGTGGAGCTCT 58.484 47.619 14.64 0.00 0.00 4.09
99 100 2.229062 TCTAAAGTGTCGTGGAGCTCTG 59.771 50.000 14.64 4.24 0.00 3.35
100 101 0.753262 AAAGTGTCGTGGAGCTCTGT 59.247 50.000 14.64 0.00 0.00 3.41
101 102 0.032678 AAGTGTCGTGGAGCTCTGTG 59.967 55.000 14.64 3.48 0.00 3.66
102 103 2.024319 GTGTCGTGGAGCTCTGTGC 61.024 63.158 14.64 0.00 43.29 4.57
103 104 2.433318 GTCGTGGAGCTCTGTGCC 60.433 66.667 14.64 0.00 44.23 5.01
104 105 2.601666 TCGTGGAGCTCTGTGCCT 60.602 61.111 14.64 0.00 44.23 4.75
105 106 1.304134 TCGTGGAGCTCTGTGCCTA 60.304 57.895 14.64 0.00 44.23 3.93
106 107 0.684479 TCGTGGAGCTCTGTGCCTAT 60.684 55.000 14.64 0.00 44.23 2.57
107 108 0.176680 CGTGGAGCTCTGTGCCTATT 59.823 55.000 14.64 0.00 44.23 1.73
108 109 1.406069 CGTGGAGCTCTGTGCCTATTT 60.406 52.381 14.64 0.00 44.23 1.40
109 110 2.159099 CGTGGAGCTCTGTGCCTATTTA 60.159 50.000 14.64 0.00 44.23 1.40
110 111 3.493350 CGTGGAGCTCTGTGCCTATTTAT 60.493 47.826 14.64 0.00 44.23 1.40
111 112 4.455606 GTGGAGCTCTGTGCCTATTTATT 58.544 43.478 14.64 0.00 44.23 1.40
112 113 4.274459 GTGGAGCTCTGTGCCTATTTATTG 59.726 45.833 14.64 0.00 44.23 1.90
113 114 3.817647 GGAGCTCTGTGCCTATTTATTGG 59.182 47.826 14.64 0.00 44.23 3.16
114 115 4.455606 GAGCTCTGTGCCTATTTATTGGT 58.544 43.478 6.43 0.00 44.23 3.67
115 116 4.455606 AGCTCTGTGCCTATTTATTGGTC 58.544 43.478 0.00 0.00 44.23 4.02
116 117 3.248602 GCTCTGTGCCTATTTATTGGTCG 59.751 47.826 0.00 0.00 35.15 4.79
117 118 4.442706 CTCTGTGCCTATTTATTGGTCGT 58.557 43.478 0.00 0.00 0.00 4.34
118 119 4.439057 TCTGTGCCTATTTATTGGTCGTC 58.561 43.478 0.00 0.00 0.00 4.20
119 120 3.537580 TGTGCCTATTTATTGGTCGTCC 58.462 45.455 0.00 0.00 0.00 4.79
120 121 2.542595 GTGCCTATTTATTGGTCGTCCG 59.457 50.000 0.00 0.00 36.30 4.79
121 122 2.168936 TGCCTATTTATTGGTCGTCCGT 59.831 45.455 0.00 0.00 36.30 4.69
122 123 3.200483 GCCTATTTATTGGTCGTCCGTT 58.800 45.455 0.00 0.00 36.30 4.44
123 124 4.141981 TGCCTATTTATTGGTCGTCCGTTA 60.142 41.667 0.00 0.00 36.30 3.18
124 125 4.992951 GCCTATTTATTGGTCGTCCGTTAT 59.007 41.667 0.00 0.00 36.30 1.89
125 126 6.158598 GCCTATTTATTGGTCGTCCGTTATA 58.841 40.000 0.00 0.00 36.30 0.98
126 127 6.815142 GCCTATTTATTGGTCGTCCGTTATAT 59.185 38.462 0.00 0.00 36.30 0.86
127 128 7.201496 GCCTATTTATTGGTCGTCCGTTATATG 60.201 40.741 0.00 0.00 36.30 1.78
128 129 5.910637 TTTATTGGTCGTCCGTTATATGC 57.089 39.130 0.00 0.00 36.30 3.14
129 130 2.963548 TTGGTCGTCCGTTATATGCA 57.036 45.000 0.00 0.00 36.30 3.96
130 131 2.502213 TGGTCGTCCGTTATATGCAG 57.498 50.000 0.00 0.00 36.30 4.41
131 132 1.752498 TGGTCGTCCGTTATATGCAGT 59.248 47.619 0.00 0.00 36.30 4.40
132 133 2.950975 TGGTCGTCCGTTATATGCAGTA 59.049 45.455 0.00 0.00 36.30 2.74
133 134 3.004002 TGGTCGTCCGTTATATGCAGTAG 59.996 47.826 0.00 0.00 36.30 2.57
134 135 3.562505 GTCGTCCGTTATATGCAGTAGG 58.437 50.000 0.00 0.00 0.00 3.18
135 136 2.555325 TCGTCCGTTATATGCAGTAGGG 59.445 50.000 0.00 0.00 0.00 3.53
136 137 2.555325 CGTCCGTTATATGCAGTAGGGA 59.445 50.000 0.00 0.00 0.00 4.20
137 138 3.366070 CGTCCGTTATATGCAGTAGGGAG 60.366 52.174 0.00 0.00 0.00 4.30
138 139 3.056749 GTCCGTTATATGCAGTAGGGAGG 60.057 52.174 0.00 0.00 0.00 4.30
139 140 2.353803 CCGTTATATGCAGTAGGGAGGC 60.354 54.545 0.00 0.00 0.00 4.70
140 141 2.299013 CGTTATATGCAGTAGGGAGGCA 59.701 50.000 0.00 0.00 42.43 4.75
141 142 3.615110 CGTTATATGCAGTAGGGAGGCAG 60.615 52.174 0.00 0.00 41.40 4.85
142 143 1.356124 ATATGCAGTAGGGAGGCAGG 58.644 55.000 0.00 0.00 41.40 4.85
143 144 1.410850 TATGCAGTAGGGAGGCAGGC 61.411 60.000 0.00 0.00 41.40 4.85
144 145 3.086600 GCAGTAGGGAGGCAGGCT 61.087 66.667 0.00 0.00 0.00 4.58
145 146 3.100503 GCAGTAGGGAGGCAGGCTC 62.101 68.421 15.82 15.82 0.00 4.70
146 147 2.443016 AGTAGGGAGGCAGGCTCG 60.443 66.667 17.40 0.00 0.00 5.03
147 148 2.760385 GTAGGGAGGCAGGCTCGT 60.760 66.667 17.40 9.94 0.00 4.18
148 149 1.455217 GTAGGGAGGCAGGCTCGTA 60.455 63.158 17.40 8.97 0.00 3.43
149 150 1.455217 TAGGGAGGCAGGCTCGTAC 60.455 63.158 17.40 10.33 0.00 3.67
150 151 2.219449 TAGGGAGGCAGGCTCGTACA 62.219 60.000 17.40 0.39 0.00 2.90
151 152 2.656069 GGGAGGCAGGCTCGTACAA 61.656 63.158 17.40 0.00 0.00 2.41
152 153 1.153549 GGAGGCAGGCTCGTACAAG 60.154 63.158 17.40 0.00 0.00 3.16
153 154 1.153549 GAGGCAGGCTCGTACAAGG 60.154 63.158 8.48 0.00 0.00 3.61
154 155 1.889530 GAGGCAGGCTCGTACAAGGT 61.890 60.000 8.48 0.00 0.00 3.50
155 156 1.741770 GGCAGGCTCGTACAAGGTG 60.742 63.158 0.00 0.00 0.00 4.00
156 157 1.292223 GCAGGCTCGTACAAGGTGA 59.708 57.895 0.00 0.00 0.00 4.02
157 158 1.014564 GCAGGCTCGTACAAGGTGAC 61.015 60.000 0.00 0.00 0.00 3.67
159 160 0.889306 AGGCTCGTACAAGGTGACTC 59.111 55.000 0.00 0.00 42.68 3.36
160 161 0.889306 GGCTCGTACAAGGTGACTCT 59.111 55.000 0.00 0.00 42.68 3.24
161 162 1.272769 GGCTCGTACAAGGTGACTCTT 59.727 52.381 0.00 0.00 42.68 2.85
162 163 2.329379 GCTCGTACAAGGTGACTCTTG 58.671 52.381 10.80 10.80 46.86 3.02
163 164 2.927014 GCTCGTACAAGGTGACTCTTGG 60.927 54.545 15.03 2.28 46.04 3.61
164 165 2.557056 CTCGTACAAGGTGACTCTTGGA 59.443 50.000 15.03 6.68 46.04 3.53
167 168 2.918712 ACAAGGTGACTCTTGGACTG 57.081 50.000 15.03 0.00 46.04 3.51
168 169 1.417890 ACAAGGTGACTCTTGGACTGG 59.582 52.381 15.03 0.00 46.04 4.00
169 170 1.694150 CAAGGTGACTCTTGGACTGGA 59.306 52.381 6.07 0.00 42.68 3.86
170 171 2.103153 AGGTGACTCTTGGACTGGAA 57.897 50.000 0.00 0.00 32.90 3.53
171 172 1.974236 AGGTGACTCTTGGACTGGAAG 59.026 52.381 0.00 0.00 35.87 3.46
172 173 1.971357 GGTGACTCTTGGACTGGAAGA 59.029 52.381 0.00 0.00 37.43 2.87
173 174 2.368875 GGTGACTCTTGGACTGGAAGAA 59.631 50.000 0.00 0.00 37.43 2.52
174 175 3.556004 GGTGACTCTTGGACTGGAAGAAG 60.556 52.174 0.00 0.00 37.43 2.85
175 176 3.070302 GTGACTCTTGGACTGGAAGAAGT 59.930 47.826 0.00 0.00 37.43 3.01
176 177 3.070159 TGACTCTTGGACTGGAAGAAGTG 59.930 47.826 0.00 0.00 37.43 3.16
177 178 3.309296 ACTCTTGGACTGGAAGAAGTGA 58.691 45.455 0.00 0.00 37.43 3.41
178 179 3.711704 ACTCTTGGACTGGAAGAAGTGAA 59.288 43.478 0.00 0.00 37.43 3.18
179 180 4.164221 ACTCTTGGACTGGAAGAAGTGAAA 59.836 41.667 0.00 0.00 37.43 2.69
180 181 4.451900 TCTTGGACTGGAAGAAGTGAAAC 58.548 43.478 0.00 0.00 37.43 2.78
181 182 4.164221 TCTTGGACTGGAAGAAGTGAAACT 59.836 41.667 0.00 0.00 45.91 2.66
205 206 6.618287 TCACTGTGAAGAAAAATGTACAGG 57.382 37.500 8.27 0.00 39.71 4.00
206 207 5.530915 TCACTGTGAAGAAAAATGTACAGGG 59.469 40.000 8.27 0.00 40.08 4.45
207 208 4.827284 ACTGTGAAGAAAAATGTACAGGGG 59.173 41.667 0.33 0.00 39.71 4.79
208 209 3.572255 TGTGAAGAAAAATGTACAGGGGC 59.428 43.478 0.33 0.00 0.00 5.80
209 210 3.572255 GTGAAGAAAAATGTACAGGGGCA 59.428 43.478 0.33 0.00 0.00 5.36
210 211 3.572255 TGAAGAAAAATGTACAGGGGCAC 59.428 43.478 0.33 0.00 0.00 5.01
211 212 2.159382 AGAAAAATGTACAGGGGCACG 58.841 47.619 0.33 0.00 0.00 5.34
212 213 1.201414 GAAAAATGTACAGGGGCACGG 59.799 52.381 0.33 0.00 0.00 4.94
213 214 0.610785 AAAATGTACAGGGGCACGGG 60.611 55.000 0.33 0.00 0.00 5.28
214 215 1.785353 AAATGTACAGGGGCACGGGT 61.785 55.000 0.33 0.00 0.00 5.28
215 216 0.910566 AATGTACAGGGGCACGGGTA 60.911 55.000 0.33 0.00 0.00 3.69
216 217 1.619807 ATGTACAGGGGCACGGGTAC 61.620 60.000 15.10 15.10 36.16 3.34
230 231 4.509737 GTACCCGGCCGCAGAGAC 62.510 72.222 22.85 12.73 0.00 3.36
231 232 4.753662 TACCCGGCCGCAGAGACT 62.754 66.667 22.85 0.00 0.00 3.24
234 235 4.200283 CCGGCCGCAGAGACTCTC 62.200 72.222 22.85 0.00 0.00 3.20
235 236 3.137459 CGGCCGCAGAGACTCTCT 61.137 66.667 14.67 2.39 42.11 3.10
236 237 2.705821 CGGCCGCAGAGACTCTCTT 61.706 63.158 14.67 0.00 38.99 2.85
237 238 1.153667 GGCCGCAGAGACTCTCTTG 60.154 63.158 5.77 2.37 38.99 3.02
238 239 1.589113 GCCGCAGAGACTCTCTTGT 59.411 57.895 5.77 0.00 38.99 3.16
239 240 0.735632 GCCGCAGAGACTCTCTTGTG 60.736 60.000 5.77 8.48 38.99 3.33
240 241 0.884514 CCGCAGAGACTCTCTTGTGA 59.115 55.000 5.77 0.00 38.99 3.58
241 242 1.270826 CCGCAGAGACTCTCTTGTGAA 59.729 52.381 5.77 0.00 38.99 3.18
242 243 2.288457 CCGCAGAGACTCTCTTGTGAAA 60.288 50.000 5.77 0.00 38.99 2.69
243 244 3.583806 CGCAGAGACTCTCTTGTGAAAT 58.416 45.455 5.77 0.00 38.99 2.17
244 245 4.380973 CCGCAGAGACTCTCTTGTGAAATA 60.381 45.833 5.77 0.00 38.99 1.40
245 246 4.797868 CGCAGAGACTCTCTTGTGAAATAG 59.202 45.833 5.77 0.00 38.99 1.73
246 247 5.392487 CGCAGAGACTCTCTTGTGAAATAGA 60.392 44.000 5.77 0.00 38.99 1.98
247 248 5.804979 GCAGAGACTCTCTTGTGAAATAGAC 59.195 44.000 5.77 0.00 38.99 2.59
248 249 6.350110 GCAGAGACTCTCTTGTGAAATAGACT 60.350 42.308 5.77 0.00 38.99 3.24
249 250 7.028962 CAGAGACTCTCTTGTGAAATAGACTG 58.971 42.308 5.77 0.00 38.99 3.51
250 251 6.945435 AGAGACTCTCTTGTGAAATAGACTGA 59.055 38.462 2.39 0.00 37.60 3.41
251 252 7.615365 AGAGACTCTCTTGTGAAATAGACTGAT 59.385 37.037 2.39 0.00 37.60 2.90
252 253 7.546358 AGACTCTCTTGTGAAATAGACTGATG 58.454 38.462 0.00 0.00 0.00 3.07
253 254 7.395772 AGACTCTCTTGTGAAATAGACTGATGA 59.604 37.037 0.00 0.00 0.00 2.92
254 255 7.901029 ACTCTCTTGTGAAATAGACTGATGAA 58.099 34.615 0.00 0.00 0.00 2.57
255 256 8.034215 ACTCTCTTGTGAAATAGACTGATGAAG 58.966 37.037 0.00 0.00 0.00 3.02
256 257 7.326454 TCTCTTGTGAAATAGACTGATGAAGG 58.674 38.462 0.00 0.00 0.00 3.46
257 258 5.877012 TCTTGTGAAATAGACTGATGAAGGC 59.123 40.000 0.00 0.00 0.00 4.35
258 259 5.164620 TGTGAAATAGACTGATGAAGGCA 57.835 39.130 0.00 0.00 35.71 4.75
259 260 4.937620 TGTGAAATAGACTGATGAAGGCAC 59.062 41.667 0.00 0.00 35.71 5.01
260 261 4.033358 GTGAAATAGACTGATGAAGGCACG 59.967 45.833 0.00 0.00 35.71 5.34
261 262 2.898729 ATAGACTGATGAAGGCACGG 57.101 50.000 0.00 0.00 35.71 4.94
262 263 0.824109 TAGACTGATGAAGGCACGGG 59.176 55.000 0.00 0.00 35.71 5.28
263 264 1.194781 AGACTGATGAAGGCACGGGT 61.195 55.000 0.00 0.00 35.71 5.28
264 265 1.003355 ACTGATGAAGGCACGGGTG 60.003 57.895 0.00 0.00 0.00 4.61
290 291 3.797353 CTGGGTGCCCACGCCTAT 61.797 66.667 5.73 0.00 46.37 2.57
291 292 3.334891 TGGGTGCCCACGCCTATT 61.335 61.111 5.73 0.00 46.37 1.73
292 293 2.828549 GGGTGCCCACGCCTATTG 60.829 66.667 1.66 0.00 46.37 1.90
293 294 3.518068 GGTGCCCACGCCTATTGC 61.518 66.667 0.00 0.00 43.60 3.56
308 309 5.636837 GCCTATTGCGAAGAAAAATGTACA 58.363 37.500 0.00 0.00 0.00 2.90
309 310 6.090129 GCCTATTGCGAAGAAAAATGTACAA 58.910 36.000 0.00 0.00 0.00 2.41
310 311 6.251376 GCCTATTGCGAAGAAAAATGTACAAG 59.749 38.462 0.00 0.00 0.00 3.16
311 312 6.747280 CCTATTGCGAAGAAAAATGTACAAGG 59.253 38.462 0.00 0.00 0.00 3.61
312 313 4.497473 TGCGAAGAAAAATGTACAAGGG 57.503 40.909 0.00 0.00 0.00 3.95
313 314 3.242518 GCGAAGAAAAATGTACAAGGGC 58.757 45.455 0.00 0.00 0.00 5.19
314 315 3.488489 CGAAGAAAAATGTACAAGGGCG 58.512 45.455 0.00 0.00 0.00 6.13
315 316 3.242518 GAAGAAAAATGTACAAGGGCGC 58.757 45.455 0.00 0.00 0.00 6.53
316 317 1.199097 AGAAAAATGTACAAGGGCGCG 59.801 47.619 0.00 0.00 0.00 6.86
317 318 0.242555 AAAAATGTACAAGGGCGCGG 59.757 50.000 8.83 0.00 0.00 6.46
318 319 1.591504 AAAATGTACAAGGGCGCGGG 61.592 55.000 8.83 0.00 0.00 6.13
319 320 2.757980 AAATGTACAAGGGCGCGGGT 62.758 55.000 8.83 0.00 0.00 5.28
320 321 1.901654 AATGTACAAGGGCGCGGGTA 61.902 55.000 8.83 0.00 0.00 3.69
321 322 2.510012 GTACAAGGGCGCGGGTAC 60.510 66.667 8.83 17.43 0.00 3.34
335 336 3.357504 GGTACCCGTCTGCACATAC 57.642 57.895 0.00 0.00 0.00 2.39
336 337 0.822164 GGTACCCGTCTGCACATACT 59.178 55.000 0.00 0.00 0.00 2.12
337 338 1.202382 GGTACCCGTCTGCACATACTC 60.202 57.143 0.00 0.00 0.00 2.59
338 339 1.749634 GTACCCGTCTGCACATACTCT 59.250 52.381 0.00 0.00 0.00 3.24
339 340 0.532573 ACCCGTCTGCACATACTCTG 59.467 55.000 0.00 0.00 0.00 3.35
340 341 0.807667 CCCGTCTGCACATACTCTGC 60.808 60.000 0.00 0.00 35.03 4.26
341 342 0.174389 CCGTCTGCACATACTCTGCT 59.826 55.000 0.00 0.00 35.53 4.24
342 343 1.404717 CCGTCTGCACATACTCTGCTT 60.405 52.381 0.00 0.00 35.53 3.91
343 344 2.341257 CGTCTGCACATACTCTGCTTT 58.659 47.619 0.00 0.00 35.53 3.51
344 345 2.346847 CGTCTGCACATACTCTGCTTTC 59.653 50.000 0.00 0.00 35.53 2.62
345 346 2.346847 GTCTGCACATACTCTGCTTTCG 59.653 50.000 0.00 0.00 35.53 3.46
346 347 1.061711 CTGCACATACTCTGCTTTCGC 59.938 52.381 0.00 0.00 35.53 4.70
347 348 0.375106 GCACATACTCTGCTTTCGCC 59.625 55.000 0.00 0.00 34.43 5.54
348 349 2.009042 GCACATACTCTGCTTTCGCCT 61.009 52.381 0.00 0.00 34.43 5.52
349 350 2.350522 CACATACTCTGCTTTCGCCTT 58.649 47.619 0.00 0.00 34.43 4.35
350 351 2.094894 CACATACTCTGCTTTCGCCTTG 59.905 50.000 0.00 0.00 34.43 3.61
351 352 2.289694 ACATACTCTGCTTTCGCCTTGT 60.290 45.455 0.00 0.00 34.43 3.16
352 353 3.056107 ACATACTCTGCTTTCGCCTTGTA 60.056 43.478 0.00 0.00 34.43 2.41
353 354 2.770164 ACTCTGCTTTCGCCTTGTAT 57.230 45.000 0.00 0.00 34.43 2.29
354 355 3.887621 ACTCTGCTTTCGCCTTGTATA 57.112 42.857 0.00 0.00 34.43 1.47
355 356 4.408182 ACTCTGCTTTCGCCTTGTATAT 57.592 40.909 0.00 0.00 34.43 0.86
356 357 4.770795 ACTCTGCTTTCGCCTTGTATATT 58.229 39.130 0.00 0.00 34.43 1.28
357 358 5.186198 ACTCTGCTTTCGCCTTGTATATTT 58.814 37.500 0.00 0.00 34.43 1.40
358 359 5.648092 ACTCTGCTTTCGCCTTGTATATTTT 59.352 36.000 0.00 0.00 34.43 1.82
359 360 6.821665 ACTCTGCTTTCGCCTTGTATATTTTA 59.178 34.615 0.00 0.00 34.43 1.52
360 361 7.499232 ACTCTGCTTTCGCCTTGTATATTTTAT 59.501 33.333 0.00 0.00 34.43 1.40
361 362 8.220755 TCTGCTTTCGCCTTGTATATTTTATT 57.779 30.769 0.00 0.00 34.43 1.40
362 363 8.128582 TCTGCTTTCGCCTTGTATATTTTATTG 58.871 33.333 0.00 0.00 34.43 1.90
363 364 7.990917 TGCTTTCGCCTTGTATATTTTATTGA 58.009 30.769 0.00 0.00 34.43 2.57
364 365 8.462811 TGCTTTCGCCTTGTATATTTTATTGAA 58.537 29.630 0.00 0.00 34.43 2.69
365 366 8.743099 GCTTTCGCCTTGTATATTTTATTGAAC 58.257 33.333 0.00 0.00 0.00 3.18
367 368 9.781834 TTTCGCCTTGTATATTTTATTGAACTG 57.218 29.630 0.00 0.00 0.00 3.16
368 369 8.725405 TCGCCTTGTATATTTTATTGAACTGA 57.275 30.769 0.00 0.00 0.00 3.41
369 370 8.826710 TCGCCTTGTATATTTTATTGAACTGAG 58.173 33.333 0.00 0.00 0.00 3.35
370 371 8.826710 CGCCTTGTATATTTTATTGAACTGAGA 58.173 33.333 0.00 0.00 0.00 3.27
371 372 9.937175 GCCTTGTATATTTTATTGAACTGAGAC 57.063 33.333 0.00 0.00 0.00 3.36
380 381 7.745620 TTTATTGAACTGAGACTTCCTTTCC 57.254 36.000 0.00 0.00 0.00 3.13
381 382 3.386768 TGAACTGAGACTTCCTTTCCG 57.613 47.619 0.00 0.00 0.00 4.30
382 383 2.037251 TGAACTGAGACTTCCTTTCCGG 59.963 50.000 0.00 0.00 0.00 5.14
383 384 1.718280 ACTGAGACTTCCTTTCCGGT 58.282 50.000 0.00 0.00 0.00 5.28
384 385 2.885616 ACTGAGACTTCCTTTCCGGTA 58.114 47.619 0.00 0.00 0.00 4.02
385 386 2.826725 ACTGAGACTTCCTTTCCGGTAG 59.173 50.000 0.00 0.00 36.34 3.18
386 387 3.090037 CTGAGACTTCCTTTCCGGTAGA 58.910 50.000 0.00 0.00 34.50 2.59
387 388 3.702045 CTGAGACTTCCTTTCCGGTAGAT 59.298 47.826 0.00 0.00 34.50 1.98
388 389 4.094476 TGAGACTTCCTTTCCGGTAGATT 58.906 43.478 0.00 0.00 34.50 2.40
389 390 5.266788 TGAGACTTCCTTTCCGGTAGATTA 58.733 41.667 0.00 0.00 34.50 1.75
390 391 5.897824 TGAGACTTCCTTTCCGGTAGATTAT 59.102 40.000 0.00 0.00 34.50 1.28
391 392 6.040616 TGAGACTTCCTTTCCGGTAGATTATC 59.959 42.308 0.00 0.00 34.50 1.75
392 393 6.137559 AGACTTCCTTTCCGGTAGATTATCT 58.862 40.000 0.00 0.00 34.50 1.98
393 394 6.265876 AGACTTCCTTTCCGGTAGATTATCTC 59.734 42.308 0.00 0.00 34.50 2.75
394 395 5.897824 ACTTCCTTTCCGGTAGATTATCTCA 59.102 40.000 0.00 0.00 34.50 3.27
395 396 6.041069 ACTTCCTTTCCGGTAGATTATCTCAG 59.959 42.308 0.00 0.00 34.50 3.35
396 397 5.702266 TCCTTTCCGGTAGATTATCTCAGA 58.298 41.667 0.00 0.00 0.00 3.27
397 398 6.134055 TCCTTTCCGGTAGATTATCTCAGAA 58.866 40.000 0.00 0.00 0.00 3.02
398 399 6.610020 TCCTTTCCGGTAGATTATCTCAGAAA 59.390 38.462 0.00 3.85 0.00 2.52
430 431 7.486647 TCTTTACCTACTAATAAACCAGCGAG 58.513 38.462 0.00 0.00 0.00 5.03
866 884 1.682684 GAGAGCACGGGAGGGAAGA 60.683 63.158 0.00 0.00 32.31 2.87
1840 1863 5.171339 ACATAGAACTTCTGTCAATGCCT 57.829 39.130 1.17 0.00 0.00 4.75
2067 2091 6.699575 AATGTGACCAGGAACTAATTATGC 57.300 37.500 0.00 0.00 36.02 3.14
2276 2307 6.070653 TGCAGCCTTCCATTCAAAATTAGATT 60.071 34.615 0.00 0.00 0.00 2.40
3120 3161 0.036952 CTTGACATCCAGTGCCTCGT 60.037 55.000 0.00 0.00 0.00 4.18
3152 3193 4.273318 ACATGAAAACCTCCTCAATAGGC 58.727 43.478 0.00 0.00 43.31 3.93
3187 3228 1.977854 TGCCCTTGCTAGAGAAAGTCA 59.022 47.619 0.00 0.00 38.71 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.195610 TCTTGATCGCCATACTTGTCACT 59.804 43.478 0.00 0.00 0.00 3.41
3 4 3.307242 GTCTTGATCGCCATACTTGTCAC 59.693 47.826 0.00 0.00 0.00 3.67
8 9 2.766263 TCCAGTCTTGATCGCCATACTT 59.234 45.455 0.00 0.00 0.00 2.24
9 10 2.388735 TCCAGTCTTGATCGCCATACT 58.611 47.619 0.00 0.00 0.00 2.12
10 11 2.890808 TCCAGTCTTGATCGCCATAC 57.109 50.000 0.00 0.00 0.00 2.39
11 12 3.031013 TCTTCCAGTCTTGATCGCCATA 58.969 45.455 0.00 0.00 0.00 2.74
12 13 1.833630 TCTTCCAGTCTTGATCGCCAT 59.166 47.619 0.00 0.00 0.00 4.40
13 14 1.266178 TCTTCCAGTCTTGATCGCCA 58.734 50.000 0.00 0.00 0.00 5.69
14 15 2.275318 CTTCTTCCAGTCTTGATCGCC 58.725 52.381 0.00 0.00 0.00 5.54
15 16 2.275318 CCTTCTTCCAGTCTTGATCGC 58.725 52.381 0.00 0.00 0.00 4.58
16 17 3.257393 CACCTTCTTCCAGTCTTGATCG 58.743 50.000 0.00 0.00 0.00 3.69
17 18 3.008485 ACCACCTTCTTCCAGTCTTGATC 59.992 47.826 0.00 0.00 0.00 2.92
18 19 2.982488 ACCACCTTCTTCCAGTCTTGAT 59.018 45.455 0.00 0.00 0.00 2.57
19 20 2.408565 ACCACCTTCTTCCAGTCTTGA 58.591 47.619 0.00 0.00 0.00 3.02
20 21 2.938956 ACCACCTTCTTCCAGTCTTG 57.061 50.000 0.00 0.00 0.00 3.02
21 22 3.555966 CAAACCACCTTCTTCCAGTCTT 58.444 45.455 0.00 0.00 0.00 3.01
22 23 2.749800 GCAAACCACCTTCTTCCAGTCT 60.750 50.000 0.00 0.00 0.00 3.24
23 24 1.609072 GCAAACCACCTTCTTCCAGTC 59.391 52.381 0.00 0.00 0.00 3.51
24 25 1.692411 GCAAACCACCTTCTTCCAGT 58.308 50.000 0.00 0.00 0.00 4.00
25 26 0.961753 GGCAAACCACCTTCTTCCAG 59.038 55.000 0.00 0.00 35.26 3.86
26 27 0.260230 TGGCAAACCACCTTCTTCCA 59.740 50.000 0.00 0.00 42.67 3.53
27 28 3.125520 TGGCAAACCACCTTCTTCC 57.874 52.632 0.00 0.00 42.67 3.46
37 38 0.681175 AAACAGAGCCATGGCAAACC 59.319 50.000 37.18 22.13 44.88 3.27
38 39 2.531522 AAAACAGAGCCATGGCAAAC 57.468 45.000 37.18 25.98 44.88 2.93
39 40 2.699846 AGAAAAACAGAGCCATGGCAAA 59.300 40.909 37.18 0.00 44.88 3.68
40 41 2.318908 AGAAAAACAGAGCCATGGCAA 58.681 42.857 37.18 0.00 44.88 4.52
41 42 1.999648 AGAAAAACAGAGCCATGGCA 58.000 45.000 37.18 0.00 44.88 4.92
42 43 3.391506 AAAGAAAAACAGAGCCATGGC 57.608 42.857 30.12 30.12 42.33 4.40
43 44 4.986659 CAGAAAAGAAAAACAGAGCCATGG 59.013 41.667 7.63 7.63 0.00 3.66
44 45 4.446719 GCAGAAAAGAAAAACAGAGCCATG 59.553 41.667 0.00 0.00 0.00 3.66
45 46 4.625028 GCAGAAAAGAAAAACAGAGCCAT 58.375 39.130 0.00 0.00 0.00 4.40
46 47 3.489059 CGCAGAAAAGAAAAACAGAGCCA 60.489 43.478 0.00 0.00 0.00 4.75
47 48 3.045688 CGCAGAAAAGAAAAACAGAGCC 58.954 45.455 0.00 0.00 0.00 4.70
48 49 2.469147 GCGCAGAAAAGAAAAACAGAGC 59.531 45.455 0.30 0.00 0.00 4.09
49 50 3.694734 TGCGCAGAAAAGAAAAACAGAG 58.305 40.909 5.66 0.00 0.00 3.35
50 51 3.694734 CTGCGCAGAAAAGAAAAACAGA 58.305 40.909 33.66 0.00 0.00 3.41
51 52 2.217167 GCTGCGCAGAAAAGAAAAACAG 59.783 45.455 40.21 10.49 0.00 3.16
52 53 2.159254 AGCTGCGCAGAAAAGAAAAACA 60.159 40.909 40.21 0.00 0.00 2.83
53 54 2.217167 CAGCTGCGCAGAAAAGAAAAAC 59.783 45.455 40.21 18.12 0.00 2.43
54 55 2.462889 CAGCTGCGCAGAAAAGAAAAA 58.537 42.857 40.21 0.00 0.00 1.94
55 56 1.865248 GCAGCTGCGCAGAAAAGAAAA 60.865 47.619 40.21 0.00 0.00 2.29
56 57 0.318107 GCAGCTGCGCAGAAAAGAAA 60.318 50.000 40.21 0.00 0.00 2.52
57 58 1.283793 GCAGCTGCGCAGAAAAGAA 59.716 52.632 40.21 0.00 0.00 2.52
58 59 2.949106 GCAGCTGCGCAGAAAAGA 59.051 55.556 40.21 0.26 0.00 2.52
68 69 2.537625 CGACACTTTAGATAGCAGCTGC 59.462 50.000 31.53 31.53 42.49 5.25
69 70 3.549471 CACGACACTTTAGATAGCAGCTG 59.451 47.826 10.11 10.11 0.00 4.24
70 71 3.429547 CCACGACACTTTAGATAGCAGCT 60.430 47.826 0.00 0.00 0.00 4.24
71 72 2.860735 CCACGACACTTTAGATAGCAGC 59.139 50.000 0.00 0.00 0.00 5.25
72 73 4.355437 CTCCACGACACTTTAGATAGCAG 58.645 47.826 0.00 0.00 0.00 4.24
73 74 3.428999 GCTCCACGACACTTTAGATAGCA 60.429 47.826 0.00 0.00 0.00 3.49
74 75 3.117046 GCTCCACGACACTTTAGATAGC 58.883 50.000 0.00 0.00 0.00 2.97
75 76 4.336993 AGAGCTCCACGACACTTTAGATAG 59.663 45.833 10.93 0.00 0.00 2.08
76 77 4.096532 CAGAGCTCCACGACACTTTAGATA 59.903 45.833 10.93 0.00 0.00 1.98
77 78 3.093057 AGAGCTCCACGACACTTTAGAT 58.907 45.455 10.93 0.00 0.00 1.98
78 79 2.229062 CAGAGCTCCACGACACTTTAGA 59.771 50.000 10.93 0.00 0.00 2.10
79 80 2.029828 ACAGAGCTCCACGACACTTTAG 60.030 50.000 10.93 0.00 0.00 1.85
80 81 1.961394 ACAGAGCTCCACGACACTTTA 59.039 47.619 10.93 0.00 0.00 1.85
81 82 0.753262 ACAGAGCTCCACGACACTTT 59.247 50.000 10.93 0.00 0.00 2.66
82 83 0.032678 CACAGAGCTCCACGACACTT 59.967 55.000 10.93 0.00 0.00 3.16
83 84 1.662608 CACAGAGCTCCACGACACT 59.337 57.895 10.93 0.00 0.00 3.55
84 85 2.024319 GCACAGAGCTCCACGACAC 61.024 63.158 10.93 0.00 41.15 3.67
85 86 2.340078 GCACAGAGCTCCACGACA 59.660 61.111 10.93 0.00 41.15 4.35
86 87 1.595993 TAGGCACAGAGCTCCACGAC 61.596 60.000 10.93 0.10 44.79 4.34
87 88 0.684479 ATAGGCACAGAGCTCCACGA 60.684 55.000 10.93 0.00 44.79 4.35
88 89 0.176680 AATAGGCACAGAGCTCCACG 59.823 55.000 10.93 1.56 44.79 4.94
89 90 2.409948 AAATAGGCACAGAGCTCCAC 57.590 50.000 10.93 0.00 44.79 4.02
90 91 4.454678 CAATAAATAGGCACAGAGCTCCA 58.545 43.478 10.93 0.00 44.79 3.86
91 92 3.817647 CCAATAAATAGGCACAGAGCTCC 59.182 47.826 10.93 0.00 44.79 4.70
92 93 4.455606 ACCAATAAATAGGCACAGAGCTC 58.544 43.478 5.27 5.27 44.79 4.09
93 94 4.455606 GACCAATAAATAGGCACAGAGCT 58.544 43.478 0.00 0.00 44.79 4.09
94 95 3.248602 CGACCAATAAATAGGCACAGAGC 59.751 47.826 0.00 0.00 44.65 4.09
95 96 4.442706 ACGACCAATAAATAGGCACAGAG 58.557 43.478 0.00 0.00 0.00 3.35
96 97 4.439057 GACGACCAATAAATAGGCACAGA 58.561 43.478 0.00 0.00 0.00 3.41
97 98 3.560068 GGACGACCAATAAATAGGCACAG 59.440 47.826 0.00 0.00 35.97 3.66
98 99 3.537580 GGACGACCAATAAATAGGCACA 58.462 45.455 0.00 0.00 35.97 4.57
99 100 2.542595 CGGACGACCAATAAATAGGCAC 59.457 50.000 4.48 0.00 35.59 5.01
100 101 2.168936 ACGGACGACCAATAAATAGGCA 59.831 45.455 4.48 0.00 35.59 4.75
101 102 2.830104 ACGGACGACCAATAAATAGGC 58.170 47.619 4.48 0.00 35.59 3.93
102 103 7.201496 GCATATAACGGACGACCAATAAATAGG 60.201 40.741 4.48 0.00 35.59 2.57
103 104 7.329962 TGCATATAACGGACGACCAATAAATAG 59.670 37.037 4.48 0.00 35.59 1.73
104 105 7.153315 TGCATATAACGGACGACCAATAAATA 58.847 34.615 4.48 0.00 35.59 1.40
105 106 5.992829 TGCATATAACGGACGACCAATAAAT 59.007 36.000 4.48 0.00 35.59 1.40
106 107 5.358090 TGCATATAACGGACGACCAATAAA 58.642 37.500 4.48 0.00 35.59 1.40
107 108 4.946445 TGCATATAACGGACGACCAATAA 58.054 39.130 4.48 0.00 35.59 1.40
108 109 4.038282 ACTGCATATAACGGACGACCAATA 59.962 41.667 4.48 0.00 35.59 1.90
109 110 3.181469 ACTGCATATAACGGACGACCAAT 60.181 43.478 4.48 0.00 35.59 3.16
110 111 2.166870 ACTGCATATAACGGACGACCAA 59.833 45.455 4.48 0.00 35.59 3.67
111 112 1.752498 ACTGCATATAACGGACGACCA 59.248 47.619 4.48 0.00 35.59 4.02
112 113 2.503920 ACTGCATATAACGGACGACC 57.496 50.000 0.00 0.00 0.00 4.79
113 114 3.562505 CCTACTGCATATAACGGACGAC 58.437 50.000 0.00 0.00 0.00 4.34
114 115 2.555325 CCCTACTGCATATAACGGACGA 59.445 50.000 0.00 0.00 0.00 4.20
115 116 2.555325 TCCCTACTGCATATAACGGACG 59.445 50.000 0.00 0.00 0.00 4.79
116 117 3.056749 CCTCCCTACTGCATATAACGGAC 60.057 52.174 0.00 0.00 0.00 4.79
117 118 3.162666 CCTCCCTACTGCATATAACGGA 58.837 50.000 0.00 0.00 0.00 4.69
118 119 2.353803 GCCTCCCTACTGCATATAACGG 60.354 54.545 0.00 0.00 0.00 4.44
119 120 2.299013 TGCCTCCCTACTGCATATAACG 59.701 50.000 0.00 0.00 0.00 3.18
120 121 3.307059 CCTGCCTCCCTACTGCATATAAC 60.307 52.174 0.00 0.00 33.97 1.89
121 122 2.906389 CCTGCCTCCCTACTGCATATAA 59.094 50.000 0.00 0.00 33.97 0.98
122 123 2.540383 CCTGCCTCCCTACTGCATATA 58.460 52.381 0.00 0.00 33.97 0.86
123 124 1.356124 CCTGCCTCCCTACTGCATAT 58.644 55.000 0.00 0.00 33.97 1.78
124 125 1.410850 GCCTGCCTCCCTACTGCATA 61.411 60.000 0.00 0.00 33.97 3.14
125 126 2.750657 GCCTGCCTCCCTACTGCAT 61.751 63.158 0.00 0.00 33.97 3.96
126 127 3.402681 GCCTGCCTCCCTACTGCA 61.403 66.667 0.00 0.00 0.00 4.41
127 128 3.086600 AGCCTGCCTCCCTACTGC 61.087 66.667 0.00 0.00 0.00 4.40
128 129 2.790791 CGAGCCTGCCTCCCTACTG 61.791 68.421 0.00 0.00 37.27 2.74
129 130 1.934459 TACGAGCCTGCCTCCCTACT 61.934 60.000 0.00 0.00 37.27 2.57
130 131 1.455217 TACGAGCCTGCCTCCCTAC 60.455 63.158 0.00 0.00 37.27 3.18
131 132 1.455217 GTACGAGCCTGCCTCCCTA 60.455 63.158 0.00 0.00 37.27 3.53
132 133 2.760385 GTACGAGCCTGCCTCCCT 60.760 66.667 0.00 0.00 37.27 4.20
133 134 2.579684 CTTGTACGAGCCTGCCTCCC 62.580 65.000 0.00 0.00 37.27 4.30
134 135 1.153549 CTTGTACGAGCCTGCCTCC 60.154 63.158 0.00 0.00 37.27 4.30
135 136 1.153549 CCTTGTACGAGCCTGCCTC 60.154 63.158 4.39 0.00 37.22 4.70
136 137 1.913762 ACCTTGTACGAGCCTGCCT 60.914 57.895 4.39 0.00 0.00 4.75
137 138 1.741770 CACCTTGTACGAGCCTGCC 60.742 63.158 4.39 0.00 0.00 4.85
138 139 1.014564 GTCACCTTGTACGAGCCTGC 61.015 60.000 4.39 0.00 0.00 4.85
139 140 0.603569 AGTCACCTTGTACGAGCCTG 59.396 55.000 4.39 2.53 0.00 4.85
140 141 0.889306 GAGTCACCTTGTACGAGCCT 59.111 55.000 4.39 0.00 0.00 4.58
141 142 0.889306 AGAGTCACCTTGTACGAGCC 59.111 55.000 4.39 0.00 0.00 4.70
142 143 2.329379 CAAGAGTCACCTTGTACGAGC 58.671 52.381 4.39 0.00 38.87 5.03
143 144 2.557056 TCCAAGAGTCACCTTGTACGAG 59.443 50.000 2.78 2.78 41.34 4.18
144 145 2.295349 GTCCAAGAGTCACCTTGTACGA 59.705 50.000 0.00 0.00 41.34 3.43
145 146 2.296471 AGTCCAAGAGTCACCTTGTACG 59.704 50.000 0.00 0.00 41.34 3.67
146 147 3.555168 CCAGTCCAAGAGTCACCTTGTAC 60.555 52.174 0.00 0.00 41.34 2.90
147 148 2.632996 CCAGTCCAAGAGTCACCTTGTA 59.367 50.000 0.00 0.00 41.34 2.41
148 149 1.417890 CCAGTCCAAGAGTCACCTTGT 59.582 52.381 0.00 0.00 41.34 3.16
149 150 1.694150 TCCAGTCCAAGAGTCACCTTG 59.306 52.381 0.00 0.00 42.28 3.61
150 151 2.103153 TCCAGTCCAAGAGTCACCTT 57.897 50.000 0.00 0.00 0.00 3.50
151 152 1.974236 CTTCCAGTCCAAGAGTCACCT 59.026 52.381 0.00 0.00 0.00 4.00
152 153 1.971357 TCTTCCAGTCCAAGAGTCACC 59.029 52.381 0.00 0.00 0.00 4.02
153 154 3.070302 ACTTCTTCCAGTCCAAGAGTCAC 59.930 47.826 0.00 0.00 31.48 3.67
154 155 3.070159 CACTTCTTCCAGTCCAAGAGTCA 59.930 47.826 0.00 0.00 31.48 3.41
155 156 3.322254 TCACTTCTTCCAGTCCAAGAGTC 59.678 47.826 0.00 0.00 31.48 3.36
156 157 3.309296 TCACTTCTTCCAGTCCAAGAGT 58.691 45.455 0.00 0.00 31.48 3.24
157 158 4.342862 TTCACTTCTTCCAGTCCAAGAG 57.657 45.455 0.00 0.00 31.48 2.85
158 159 4.164221 AGTTTCACTTCTTCCAGTCCAAGA 59.836 41.667 0.00 0.00 0.00 3.02
159 160 4.455606 AGTTTCACTTCTTCCAGTCCAAG 58.544 43.478 0.00 0.00 0.00 3.61
160 161 4.503714 AGTTTCACTTCTTCCAGTCCAA 57.496 40.909 0.00 0.00 0.00 3.53
161 162 4.503714 AAGTTTCACTTCTTCCAGTCCA 57.496 40.909 0.00 0.00 31.77 4.02
181 182 6.039270 CCCTGTACATTTTTCTTCACAGTGAA 59.961 38.462 15.39 15.39 34.79 3.18
182 183 5.530915 CCCTGTACATTTTTCTTCACAGTGA 59.469 40.000 0.00 0.00 33.23 3.41
183 184 5.278463 CCCCTGTACATTTTTCTTCACAGTG 60.278 44.000 0.00 0.00 33.23 3.66
184 185 4.827284 CCCCTGTACATTTTTCTTCACAGT 59.173 41.667 0.00 0.00 33.23 3.55
185 186 4.321230 GCCCCTGTACATTTTTCTTCACAG 60.321 45.833 0.00 0.00 34.54 3.66
186 187 3.572255 GCCCCTGTACATTTTTCTTCACA 59.428 43.478 0.00 0.00 0.00 3.58
187 188 3.572255 TGCCCCTGTACATTTTTCTTCAC 59.428 43.478 0.00 0.00 0.00 3.18
188 189 3.572255 GTGCCCCTGTACATTTTTCTTCA 59.428 43.478 0.00 0.00 0.00 3.02
189 190 3.365969 CGTGCCCCTGTACATTTTTCTTC 60.366 47.826 0.00 0.00 0.00 2.87
190 191 2.556622 CGTGCCCCTGTACATTTTTCTT 59.443 45.455 0.00 0.00 0.00 2.52
191 192 2.159382 CGTGCCCCTGTACATTTTTCT 58.841 47.619 0.00 0.00 0.00 2.52
192 193 1.201414 CCGTGCCCCTGTACATTTTTC 59.799 52.381 0.00 0.00 0.00 2.29
193 194 1.253100 CCGTGCCCCTGTACATTTTT 58.747 50.000 0.00 0.00 0.00 1.94
194 195 0.610785 CCCGTGCCCCTGTACATTTT 60.611 55.000 0.00 0.00 0.00 1.82
195 196 1.001393 CCCGTGCCCCTGTACATTT 60.001 57.895 0.00 0.00 0.00 2.32
196 197 0.910566 TACCCGTGCCCCTGTACATT 60.911 55.000 0.00 0.00 0.00 2.71
197 198 1.306312 TACCCGTGCCCCTGTACAT 60.306 57.895 0.00 0.00 0.00 2.29
198 199 2.120053 TACCCGTGCCCCTGTACA 59.880 61.111 0.00 0.00 0.00 2.90
199 200 2.580815 GTACCCGTGCCCCTGTAC 59.419 66.667 0.00 0.00 0.00 2.90
200 201 2.684655 GGTACCCGTGCCCCTGTA 60.685 66.667 0.00 0.00 0.00 2.74
213 214 4.509737 GTCTCTGCGGCCGGGTAC 62.510 72.222 29.38 10.81 0.00 3.34
214 215 4.753662 AGTCTCTGCGGCCGGGTA 62.754 66.667 29.38 0.00 0.00 3.69
217 218 4.200283 GAGAGTCTCTGCGGCCGG 62.200 72.222 29.38 11.74 0.00 6.13
218 219 2.705821 AAGAGAGTCTCTGCGGCCG 61.706 63.158 23.33 24.05 40.28 6.13
219 220 1.153667 CAAGAGAGTCTCTGCGGCC 60.154 63.158 23.33 0.00 40.28 6.13
220 221 0.735632 CACAAGAGAGTCTCTGCGGC 60.736 60.000 23.33 0.00 40.28 6.53
221 222 0.884514 TCACAAGAGAGTCTCTGCGG 59.115 55.000 23.33 17.12 40.28 5.69
222 223 2.713895 TTCACAAGAGAGTCTCTGCG 57.286 50.000 23.33 18.66 40.28 5.18
223 224 5.804979 GTCTATTTCACAAGAGAGTCTCTGC 59.195 44.000 23.33 0.00 40.28 4.26
224 225 7.028962 CAGTCTATTTCACAAGAGAGTCTCTG 58.971 42.308 23.33 18.04 40.28 3.35
225 226 6.945435 TCAGTCTATTTCACAAGAGAGTCTCT 59.055 38.462 17.30 17.30 43.37 3.10
226 227 7.151999 TCAGTCTATTTCACAAGAGAGTCTC 57.848 40.000 12.54 12.54 32.50 3.36
227 228 7.395772 TCATCAGTCTATTTCACAAGAGAGTCT 59.604 37.037 0.00 0.00 32.50 3.24
228 229 7.542890 TCATCAGTCTATTTCACAAGAGAGTC 58.457 38.462 0.00 0.00 32.50 3.36
229 230 7.473735 TCATCAGTCTATTTCACAAGAGAGT 57.526 36.000 0.00 0.00 34.74 3.24
230 231 7.492020 CCTTCATCAGTCTATTTCACAAGAGAG 59.508 40.741 0.00 0.00 30.69 3.20
231 232 7.326454 CCTTCATCAGTCTATTTCACAAGAGA 58.674 38.462 0.00 0.00 0.00 3.10
232 233 6.036953 GCCTTCATCAGTCTATTTCACAAGAG 59.963 42.308 0.00 0.00 0.00 2.85
233 234 5.877012 GCCTTCATCAGTCTATTTCACAAGA 59.123 40.000 0.00 0.00 0.00 3.02
234 235 5.645067 TGCCTTCATCAGTCTATTTCACAAG 59.355 40.000 0.00 0.00 0.00 3.16
235 236 5.412594 GTGCCTTCATCAGTCTATTTCACAA 59.587 40.000 0.00 0.00 0.00 3.33
236 237 4.937620 GTGCCTTCATCAGTCTATTTCACA 59.062 41.667 0.00 0.00 0.00 3.58
237 238 4.033358 CGTGCCTTCATCAGTCTATTTCAC 59.967 45.833 0.00 0.00 0.00 3.18
238 239 4.183865 CGTGCCTTCATCAGTCTATTTCA 58.816 43.478 0.00 0.00 0.00 2.69
239 240 3.557595 CCGTGCCTTCATCAGTCTATTTC 59.442 47.826 0.00 0.00 0.00 2.17
240 241 3.535561 CCGTGCCTTCATCAGTCTATTT 58.464 45.455 0.00 0.00 0.00 1.40
241 242 2.158900 CCCGTGCCTTCATCAGTCTATT 60.159 50.000 0.00 0.00 0.00 1.73
242 243 1.414181 CCCGTGCCTTCATCAGTCTAT 59.586 52.381 0.00 0.00 0.00 1.98
243 244 0.824109 CCCGTGCCTTCATCAGTCTA 59.176 55.000 0.00 0.00 0.00 2.59
244 245 1.194781 ACCCGTGCCTTCATCAGTCT 61.195 55.000 0.00 0.00 0.00 3.24
245 246 1.021390 CACCCGTGCCTTCATCAGTC 61.021 60.000 0.00 0.00 0.00 3.51
246 247 1.003355 CACCCGTGCCTTCATCAGT 60.003 57.895 0.00 0.00 0.00 3.41
247 248 3.895025 CACCCGTGCCTTCATCAG 58.105 61.111 0.00 0.00 0.00 2.90
285 286 5.636837 TGTACATTTTTCTTCGCAATAGGC 58.363 37.500 0.00 0.00 39.90 3.93
286 287 6.747280 CCTTGTACATTTTTCTTCGCAATAGG 59.253 38.462 0.00 0.00 0.00 2.57
287 288 6.747280 CCCTTGTACATTTTTCTTCGCAATAG 59.253 38.462 0.00 0.00 0.00 1.73
288 289 6.616947 CCCTTGTACATTTTTCTTCGCAATA 58.383 36.000 0.00 0.00 0.00 1.90
289 290 5.469479 CCCTTGTACATTTTTCTTCGCAAT 58.531 37.500 0.00 0.00 0.00 3.56
290 291 4.794655 GCCCTTGTACATTTTTCTTCGCAA 60.795 41.667 0.00 0.00 0.00 4.85
291 292 3.305064 GCCCTTGTACATTTTTCTTCGCA 60.305 43.478 0.00 0.00 0.00 5.10
292 293 3.242518 GCCCTTGTACATTTTTCTTCGC 58.757 45.455 0.00 0.00 0.00 4.70
293 294 3.488489 CGCCCTTGTACATTTTTCTTCG 58.512 45.455 0.00 0.00 0.00 3.79
294 295 3.242518 GCGCCCTTGTACATTTTTCTTC 58.757 45.455 0.00 0.00 0.00 2.87
295 296 2.351350 CGCGCCCTTGTACATTTTTCTT 60.351 45.455 0.00 0.00 0.00 2.52
296 297 1.199097 CGCGCCCTTGTACATTTTTCT 59.801 47.619 0.00 0.00 0.00 2.52
297 298 1.613270 CGCGCCCTTGTACATTTTTC 58.387 50.000 0.00 0.00 0.00 2.29
298 299 0.242555 CCGCGCCCTTGTACATTTTT 59.757 50.000 0.00 0.00 0.00 1.94
299 300 1.591504 CCCGCGCCCTTGTACATTTT 61.592 55.000 0.00 0.00 0.00 1.82
300 301 2.043980 CCCGCGCCCTTGTACATTT 61.044 57.895 0.00 0.00 0.00 2.32
301 302 1.901654 TACCCGCGCCCTTGTACATT 61.902 55.000 0.00 0.00 0.00 2.71
302 303 2.360767 TACCCGCGCCCTTGTACAT 61.361 57.895 0.00 0.00 0.00 2.29
303 304 2.996153 TACCCGCGCCCTTGTACA 60.996 61.111 0.00 0.00 0.00 2.90
304 305 2.510012 GTACCCGCGCCCTTGTAC 60.510 66.667 0.00 4.75 0.00 2.90
305 306 3.773404 GGTACCCGCGCCCTTGTA 61.773 66.667 0.00 0.00 0.00 2.41
318 319 1.749634 AGAGTATGTGCAGACGGGTAC 59.250 52.381 0.00 0.00 0.00 3.34
319 320 1.749063 CAGAGTATGTGCAGACGGGTA 59.251 52.381 0.00 0.00 0.00 3.69
320 321 0.532573 CAGAGTATGTGCAGACGGGT 59.467 55.000 0.00 0.00 0.00 5.28
321 322 3.352447 CAGAGTATGTGCAGACGGG 57.648 57.895 0.00 0.00 0.00 5.28
341 342 9.781834 CAGTTCAATAAAATATACAAGGCGAAA 57.218 29.630 0.00 0.00 0.00 3.46
342 343 9.168451 TCAGTTCAATAAAATATACAAGGCGAA 57.832 29.630 0.00 0.00 0.00 4.70
343 344 8.725405 TCAGTTCAATAAAATATACAAGGCGA 57.275 30.769 0.00 0.00 0.00 5.54
344 345 8.826710 TCTCAGTTCAATAAAATATACAAGGCG 58.173 33.333 0.00 0.00 0.00 5.52
345 346 9.937175 GTCTCAGTTCAATAAAATATACAAGGC 57.063 33.333 0.00 0.00 0.00 4.35
354 355 8.797438 GGAAAGGAAGTCTCAGTTCAATAAAAT 58.203 33.333 0.00 0.00 29.20 1.82
355 356 7.041372 CGGAAAGGAAGTCTCAGTTCAATAAAA 60.041 37.037 0.00 0.00 29.20 1.52
356 357 6.426937 CGGAAAGGAAGTCTCAGTTCAATAAA 59.573 38.462 0.00 0.00 29.20 1.40
357 358 5.932303 CGGAAAGGAAGTCTCAGTTCAATAA 59.068 40.000 0.00 0.00 29.20 1.40
358 359 5.479306 CGGAAAGGAAGTCTCAGTTCAATA 58.521 41.667 0.00 0.00 29.20 1.90
359 360 4.319177 CGGAAAGGAAGTCTCAGTTCAAT 58.681 43.478 0.00 0.00 29.20 2.57
360 361 3.494398 CCGGAAAGGAAGTCTCAGTTCAA 60.494 47.826 0.00 0.00 45.00 2.69
361 362 2.037251 CCGGAAAGGAAGTCTCAGTTCA 59.963 50.000 0.00 0.00 45.00 3.18
362 363 2.037381 ACCGGAAAGGAAGTCTCAGTTC 59.963 50.000 9.46 0.00 45.00 3.01
363 364 2.047830 ACCGGAAAGGAAGTCTCAGTT 58.952 47.619 9.46 0.00 45.00 3.16
364 365 1.718280 ACCGGAAAGGAAGTCTCAGT 58.282 50.000 9.46 0.00 45.00 3.41
365 366 3.090037 TCTACCGGAAAGGAAGTCTCAG 58.910 50.000 9.46 0.00 45.00 3.35
366 367 3.165087 TCTACCGGAAAGGAAGTCTCA 57.835 47.619 9.46 0.00 45.00 3.27
367 368 4.739587 AATCTACCGGAAAGGAAGTCTC 57.260 45.455 9.46 0.00 45.00 3.36
368 369 6.137559 AGATAATCTACCGGAAAGGAAGTCT 58.862 40.000 9.46 5.26 45.00 3.24
369 370 6.040616 TGAGATAATCTACCGGAAAGGAAGTC 59.959 42.308 9.46 3.13 45.00 3.01
370 371 5.897824 TGAGATAATCTACCGGAAAGGAAGT 59.102 40.000 9.46 0.00 45.00 3.01
371 372 6.265649 TCTGAGATAATCTACCGGAAAGGAAG 59.734 42.308 9.46 0.00 45.00 3.46
372 373 6.134055 TCTGAGATAATCTACCGGAAAGGAA 58.866 40.000 9.46 0.00 45.00 3.36
373 374 5.702266 TCTGAGATAATCTACCGGAAAGGA 58.298 41.667 9.46 0.04 45.00 3.36
375 376 8.364142 AGATTTCTGAGATAATCTACCGGAAAG 58.636 37.037 9.46 5.16 38.87 2.62
376 377 8.251383 AGATTTCTGAGATAATCTACCGGAAA 57.749 34.615 9.46 0.00 38.87 3.13
377 378 7.841282 AGATTTCTGAGATAATCTACCGGAA 57.159 36.000 9.46 0.00 38.87 4.30
378 379 7.841282 AAGATTTCTGAGATAATCTACCGGA 57.159 36.000 9.46 0.00 39.53 5.14
430 431 0.039798 TGACGTACGACCAGAAGCAC 60.040 55.000 24.41 0.90 0.00 4.40
866 884 1.268283 CGCCTCCCTCTTCCTTCCTT 61.268 60.000 0.00 0.00 0.00 3.36
1784 1807 6.643360 GCGTCAAGGTGGTAAAACAAAATTAT 59.357 34.615 0.00 0.00 0.00 1.28
2003 2027 2.568509 AGAAATTGACCAAAGCCATGGG 59.431 45.455 15.13 0.00 45.18 4.00
2067 2091 6.696148 GTGTCAGGTTCTATACTGAATTACGG 59.304 42.308 0.00 0.00 44.53 4.02
3120 3161 1.686052 GGTTTTCATGTTGGGCAGACA 59.314 47.619 0.00 0.00 0.00 3.41
3152 3193 4.491676 CAAGGGCAAAATTCAGAGATGTG 58.508 43.478 0.00 0.00 0.00 3.21
3187 3228 1.613437 AGCTACGGCAAAACAATGCTT 59.387 42.857 0.00 0.00 45.68 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.