Multiple sequence alignment - TraesCS3B01G021000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G021000 chr3B 100.000 9667 0 0 1 9667 8803356 8813022 0.000000e+00 17852
1 TraesCS3B01G021000 chr3B 88.929 280 25 6 453 731 377115128 377115402 3.340000e-89 340
2 TraesCS3B01G021000 chr3B 82.511 223 27 9 991 1211 668450195 668450407 1.660000e-42 185
3 TraesCS3B01G021000 chr3B 82.063 223 28 9 991 1211 575625242 575625454 7.710000e-41 180
4 TraesCS3B01G021000 chr3B 83.951 162 20 4 1053 1214 321283997 321283842 6.050000e-32 150
5 TraesCS3B01G021000 chr3D 92.373 4143 190 53 873 4959 7219173 7223245 0.000000e+00 5784
6 TraesCS3B01G021000 chr3D 93.312 3499 156 27 6208 9667 7224684 7228143 0.000000e+00 5094
7 TraesCS3B01G021000 chr3D 92.194 679 41 6 5528 6203 7223922 7224591 0.000000e+00 950
8 TraesCS3B01G021000 chr3D 90.144 487 32 6 4957 5438 7223448 7223923 3.840000e-173 619
9 TraesCS3B01G021000 chr3D 88.158 380 41 2 21 396 7218646 7219025 5.320000e-122 449
10 TraesCS3B01G021000 chr3D 89.643 280 24 5 453 731 491959961 491960236 1.540000e-92 351
11 TraesCS3B01G021000 chr3D 88.929 280 26 5 453 731 255424400 255424675 3.340000e-89 340
12 TraesCS3B01G021000 chr3A 93.934 2753 106 24 4957 7698 13039787 13037085 0.000000e+00 4102
13 TraesCS3B01G021000 chr3A 88.356 3358 205 80 735 4011 13044451 13041199 0.000000e+00 3864
14 TraesCS3B01G021000 chr3A 89.885 2007 97 37 7706 9667 13037031 13035086 0.000000e+00 2484
15 TraesCS3B01G021000 chr3A 95.616 958 33 5 4008 4959 13040920 13039966 0.000000e+00 1528
16 TraesCS3B01G021000 chr3A 88.612 281 26 6 453 731 319962320 319962596 4.330000e-88 337
17 TraesCS3B01G021000 chr3A 89.024 246 27 0 1 246 13044749 13044504 1.220000e-78 305
18 TraesCS3B01G021000 chr3A 83.936 249 29 8 991 1234 592201861 592201619 2.720000e-55 228
19 TraesCS3B01G021000 chr3A 82.213 253 29 11 991 1234 592137163 592136918 4.580000e-48 204
20 TraesCS3B01G021000 chr6D 88.581 289 29 4 452 739 87389261 87389546 2.000000e-91 348
21 TraesCS3B01G021000 chr6D 85.015 327 33 15 420 737 3744280 3743961 1.570000e-82 318
22 TraesCS3B01G021000 chr5D 87.097 310 29 7 427 735 132472931 132472632 3.340000e-89 340
23 TraesCS3B01G021000 chr4D 87.943 282 29 5 455 735 32419102 32418825 2.600000e-85 327
24 TraesCS3B01G021000 chr2A 87.500 288 29 7 453 738 561299033 561298751 9.360000e-85 326
25 TraesCS3B01G021000 chr6B 84.753 223 25 6 991 1211 576449317 576449532 2.110000e-51 215
26 TraesCS3B01G021000 chr4B 82.960 223 30 6 991 1211 310203799 310204015 2.750000e-45 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G021000 chr3B 8803356 8813022 9666 False 17852.0 17852 100.0000 1 9667 1 chr3B.!!$F1 9666
1 TraesCS3B01G021000 chr3D 7218646 7228143 9497 False 2579.2 5784 91.2362 21 9667 5 chr3D.!!$F3 9646
2 TraesCS3B01G021000 chr3A 13035086 13044749 9663 True 2456.6 4102 91.3630 1 9667 5 chr3A.!!$R3 9666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
719 758 0.449786 TAATCCCGTTGCAATGCACG 59.550 50.000 7.72 14.71 38.71 5.34 F
1304 1353 0.116940 TTTCCCTACCCCAGGTACGT 59.883 55.000 0.00 0.00 43.80 3.57 F
1654 1738 0.178068 TATGCAGGAAGGAAGGCGTC 59.822 55.000 0.00 0.00 0.00 5.19 F
2403 2510 0.395724 GGTCTAACCATGGGCCCAAG 60.396 60.000 32.58 26.17 38.42 3.61 F
2929 3036 0.032952 TAGCTGCACCGTTCGAGTTT 59.967 50.000 1.02 0.00 0.00 2.66 F
3694 3830 0.033504 ACATCTGAGGAACAACGCGT 59.966 50.000 5.58 5.58 0.00 6.01 F
3892 4028 1.543429 CCAGCAACCGGGGAGATAATC 60.543 57.143 6.32 0.00 0.00 1.75 F
4125 4543 1.979855 TTGCTAAAGTTCAGCTGCCA 58.020 45.000 9.47 0.00 39.83 4.92 F
5075 5705 2.294512 GAGCAAACTGGAAAGAACTGGG 59.705 50.000 0.00 0.00 0.00 4.45 F
6034 6679 0.249911 GCGAGGCCTGAATCGGTATT 60.250 55.000 12.00 0.00 39.31 1.89 F
6366 7100 2.930682 GTGGAGCTACTTCTTTAAGGCG 59.069 50.000 0.00 0.00 37.01 5.52 F
7162 7896 0.536006 AGAGTTGCCTGTCTGGTTGC 60.536 55.000 0.00 0.00 38.35 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2066 2170 0.387239 GGAAGTGGTCAATGTTGCGC 60.387 55.000 0.00 0.00 0.00 6.09 R
2669 2776 1.006494 CGCAAAAACAGCCACGTTTTC 60.006 47.619 9.02 0.00 45.85 2.29 R
2912 3019 1.204312 GAAACTCGAACGGTGCAGC 59.796 57.895 5.64 5.64 0.00 5.25 R
3248 3380 1.656441 GGTGCTGAGCAACAGGTTG 59.344 57.895 19.08 7.77 46.68 3.77 R
4682 5107 1.705186 ACCTGGTAATGAGGTGTGCTT 59.295 47.619 0.00 0.00 42.56 3.91 R
5109 5739 0.470766 ACCCTCAAGTTGCAACGGTA 59.529 50.000 23.21 11.59 0.00 4.02 R
5111 5741 0.817634 TGACCCTCAAGTTGCAACGG 60.818 55.000 23.21 19.33 0.00 4.44 R
5495 6130 1.065926 CAAGGGCACAGCAGTCTATCA 60.066 52.381 0.00 0.00 0.00 2.15 R
6990 7724 0.687354 AGGTTGGCTCGACATCAGTT 59.313 50.000 0.00 0.00 0.00 3.16 R
7002 7736 1.583477 GAGCTGCTCAAAGGTTGGC 59.417 57.895 24.02 0.00 0.00 4.52 R
8139 8920 1.234615 TGCTCGCTTGGTACCAAAGC 61.235 55.000 30.48 30.48 37.64 3.51 R
8699 9506 1.202582 CAACTACTCTGACAGGACCCG 59.797 57.143 1.81 0.00 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 2.443957 AAGCAAGCCTTCGCGAAACG 62.444 55.000 23.54 16.28 45.62 3.60
136 137 0.535553 TTGAAACCCACCGCCACTAC 60.536 55.000 0.00 0.00 0.00 2.73
150 151 1.337260 CCACTACCGCCAGAGCATATC 60.337 57.143 0.00 0.00 39.83 1.63
152 153 0.734253 CTACCGCCAGAGCATATCGC 60.734 60.000 0.00 0.00 39.83 4.58
153 154 2.154798 TACCGCCAGAGCATATCGCC 62.155 60.000 0.00 0.00 44.04 5.54
173 174 1.811266 CCACCATCGTCGCCTCAAG 60.811 63.158 0.00 0.00 0.00 3.02
180 184 2.338984 GTCGCCTCAAGTGTCCGT 59.661 61.111 0.00 0.00 0.00 4.69
183 187 3.050275 GCCTCAAGTGTCCGTGGC 61.050 66.667 0.00 0.00 0.00 5.01
192 196 4.944372 GTCCGTGGCCCGCTATCG 62.944 72.222 0.00 0.00 34.38 2.92
213 217 2.459442 GCTGTGAGAGCGTGCCATC 61.459 63.158 0.00 0.00 38.15 3.51
232 236 2.432628 GCTCGTCACAACCCTCCG 60.433 66.667 0.00 0.00 0.00 4.63
292 296 3.681835 GTCCTCCGTGGTCGTGCT 61.682 66.667 0.00 0.00 37.07 4.40
295 299 3.991051 CTCCGTGGTCGTGCTGGT 61.991 66.667 0.00 0.00 35.01 4.00
298 302 3.036084 CGTGGTCGTGCTGGTGTC 61.036 66.667 0.00 0.00 0.00 3.67
300 304 1.663739 GTGGTCGTGCTGGTGTCTA 59.336 57.895 0.00 0.00 0.00 2.59
304 308 2.022195 GGTCGTGCTGGTGTCTATCTA 58.978 52.381 0.00 0.00 0.00 1.98
314 318 6.552725 TGCTGGTGTCTATCTAATGAGAATCT 59.447 38.462 0.00 0.00 34.61 2.40
323 327 8.224025 TCTATCTAATGAGAATCTGGTGAGACT 58.776 37.037 0.00 0.00 34.61 3.24
475 514 9.571810 TTTTACTTAAAAAGAACGAAAGGTTCC 57.428 29.630 3.17 0.00 41.44 3.62
484 523 2.235891 ACGAAAGGTTCCCATTTCACC 58.764 47.619 0.00 0.00 35.58 4.02
485 524 2.158519 ACGAAAGGTTCCCATTTCACCT 60.159 45.455 0.00 0.00 43.17 4.00
507 546 2.721425 TTTTTCCACCACCTCTTCGT 57.279 45.000 0.00 0.00 0.00 3.85
508 547 2.721425 TTTTCCACCACCTCTTCGTT 57.279 45.000 0.00 0.00 0.00 3.85
509 548 2.249844 TTTCCACCACCTCTTCGTTC 57.750 50.000 0.00 0.00 0.00 3.95
510 549 1.124780 TTCCACCACCTCTTCGTTCA 58.875 50.000 0.00 0.00 0.00 3.18
511 550 1.124780 TCCACCACCTCTTCGTTCAA 58.875 50.000 0.00 0.00 0.00 2.69
512 551 1.697432 TCCACCACCTCTTCGTTCAAT 59.303 47.619 0.00 0.00 0.00 2.57
513 552 2.076863 CCACCACCTCTTCGTTCAATC 58.923 52.381 0.00 0.00 0.00 2.67
514 553 2.289694 CCACCACCTCTTCGTTCAATCT 60.290 50.000 0.00 0.00 0.00 2.40
515 554 3.403038 CACCACCTCTTCGTTCAATCTT 58.597 45.455 0.00 0.00 0.00 2.40
516 555 3.433615 CACCACCTCTTCGTTCAATCTTC 59.566 47.826 0.00 0.00 0.00 2.87
517 556 3.003480 CCACCTCTTCGTTCAATCTTCC 58.997 50.000 0.00 0.00 0.00 3.46
518 557 3.557054 CCACCTCTTCGTTCAATCTTCCA 60.557 47.826 0.00 0.00 0.00 3.53
519 558 4.256920 CACCTCTTCGTTCAATCTTCCAT 58.743 43.478 0.00 0.00 0.00 3.41
520 559 4.093998 CACCTCTTCGTTCAATCTTCCATG 59.906 45.833 0.00 0.00 0.00 3.66
521 560 4.256920 CCTCTTCGTTCAATCTTCCATGT 58.743 43.478 0.00 0.00 0.00 3.21
522 561 5.046591 ACCTCTTCGTTCAATCTTCCATGTA 60.047 40.000 0.00 0.00 0.00 2.29
523 562 6.051717 CCTCTTCGTTCAATCTTCCATGTAT 58.948 40.000 0.00 0.00 0.00 2.29
524 563 7.147724 ACCTCTTCGTTCAATCTTCCATGTATA 60.148 37.037 0.00 0.00 0.00 1.47
525 564 7.875041 CCTCTTCGTTCAATCTTCCATGTATAT 59.125 37.037 0.00 0.00 0.00 0.86
526 565 8.593492 TCTTCGTTCAATCTTCCATGTATATG 57.407 34.615 0.00 0.00 0.00 1.78
527 566 8.421002 TCTTCGTTCAATCTTCCATGTATATGA 58.579 33.333 0.25 0.00 36.36 2.15
528 567 9.212641 CTTCGTTCAATCTTCCATGTATATGAT 57.787 33.333 0.25 0.00 36.36 2.45
563 602 9.802039 ATCTTAATTTACTTACCTTGTGAACCA 57.198 29.630 0.00 0.00 0.00 3.67
564 603 9.629878 TCTTAATTTACTTACCTTGTGAACCAA 57.370 29.630 0.00 0.00 0.00 3.67
568 607 6.887626 TTACTTACCTTGTGAACCAATTCC 57.112 37.500 0.00 0.00 33.49 3.01
569 608 4.798882 ACTTACCTTGTGAACCAATTCCA 58.201 39.130 0.00 0.00 33.49 3.53
570 609 4.583073 ACTTACCTTGTGAACCAATTCCAC 59.417 41.667 0.00 0.00 33.49 4.02
571 610 3.312736 ACCTTGTGAACCAATTCCACT 57.687 42.857 0.00 0.00 33.49 4.00
572 611 3.642141 ACCTTGTGAACCAATTCCACTT 58.358 40.909 0.00 0.00 33.49 3.16
573 612 4.030216 ACCTTGTGAACCAATTCCACTTT 58.970 39.130 0.00 0.00 33.49 2.66
574 613 5.205056 ACCTTGTGAACCAATTCCACTTTA 58.795 37.500 0.00 0.00 33.49 1.85
575 614 5.659079 ACCTTGTGAACCAATTCCACTTTAA 59.341 36.000 0.00 0.00 33.49 1.52
576 615 6.326323 ACCTTGTGAACCAATTCCACTTTAAT 59.674 34.615 0.00 0.00 33.49 1.40
577 616 7.147567 ACCTTGTGAACCAATTCCACTTTAATT 60.148 33.333 0.00 0.00 33.49 1.40
578 617 7.714813 CCTTGTGAACCAATTCCACTTTAATTT 59.285 33.333 0.00 0.00 33.49 1.82
579 618 9.757227 CTTGTGAACCAATTCCACTTTAATTTA 57.243 29.630 0.00 0.00 33.49 1.40
580 619 9.535878 TTGTGAACCAATTCCACTTTAATTTAC 57.464 29.630 0.00 0.00 33.49 2.01
581 620 8.919145 TGTGAACCAATTCCACTTTAATTTACT 58.081 29.630 0.00 0.00 33.49 2.24
582 621 9.758651 GTGAACCAATTCCACTTTAATTTACTT 57.241 29.630 0.00 0.00 33.49 2.24
586 625 8.517056 ACCAATTCCACTTTAATTTACTTACCG 58.483 33.333 0.00 0.00 0.00 4.02
587 626 8.732531 CCAATTCCACTTTAATTTACTTACCGA 58.267 33.333 0.00 0.00 0.00 4.69
590 629 8.907222 TTCCACTTTAATTTACTTACCGAACT 57.093 30.769 0.00 0.00 0.00 3.01
591 630 8.907222 TCCACTTTAATTTACTTACCGAACTT 57.093 30.769 0.00 0.00 0.00 2.66
592 631 8.992073 TCCACTTTAATTTACTTACCGAACTTC 58.008 33.333 0.00 0.00 0.00 3.01
593 632 8.996271 CCACTTTAATTTACTTACCGAACTTCT 58.004 33.333 0.00 0.00 0.00 2.85
605 644 9.715121 ACTTACCGAACTTCTAATCAAAATACA 57.285 29.630 0.00 0.00 0.00 2.29
608 647 8.040716 ACCGAACTTCTAATCAAAATACAAGG 57.959 34.615 0.00 0.00 0.00 3.61
609 648 7.664318 ACCGAACTTCTAATCAAAATACAAGGT 59.336 33.333 0.00 0.00 0.00 3.50
610 649 9.158233 CCGAACTTCTAATCAAAATACAAGGTA 57.842 33.333 0.00 0.00 0.00 3.08
620 659 6.919721 TCAAAATACAAGGTAATTCACAGGC 58.080 36.000 0.00 0.00 0.00 4.85
621 660 6.491745 TCAAAATACAAGGTAATTCACAGGCA 59.508 34.615 0.00 0.00 0.00 4.75
622 661 6.515272 AAATACAAGGTAATTCACAGGCAG 57.485 37.500 0.00 0.00 0.00 4.85
623 662 3.788227 ACAAGGTAATTCACAGGCAGA 57.212 42.857 0.00 0.00 0.00 4.26
624 663 4.098914 ACAAGGTAATTCACAGGCAGAA 57.901 40.909 0.00 0.00 0.00 3.02
625 664 4.666512 ACAAGGTAATTCACAGGCAGAAT 58.333 39.130 0.00 0.00 37.30 2.40
626 665 5.079643 ACAAGGTAATTCACAGGCAGAATT 58.920 37.500 14.15 14.15 45.05 2.17
627 666 5.539955 ACAAGGTAATTCACAGGCAGAATTT 59.460 36.000 14.68 0.00 41.54 1.82
628 667 5.649782 AGGTAATTCACAGGCAGAATTTG 57.350 39.130 14.68 0.00 41.54 2.32
629 668 4.463891 AGGTAATTCACAGGCAGAATTTGG 59.536 41.667 14.68 0.00 41.54 3.28
630 669 4.220602 GGTAATTCACAGGCAGAATTTGGT 59.779 41.667 14.68 0.00 41.54 3.67
631 670 3.947910 ATTCACAGGCAGAATTTGGTG 57.052 42.857 0.00 0.00 31.99 4.17
632 671 2.655090 TCACAGGCAGAATTTGGTGA 57.345 45.000 0.00 0.00 33.31 4.02
633 672 2.942804 TCACAGGCAGAATTTGGTGAA 58.057 42.857 0.00 0.00 32.85 3.18
634 673 2.622942 TCACAGGCAGAATTTGGTGAAC 59.377 45.455 0.00 0.00 32.85 3.18
635 674 2.361757 CACAGGCAGAATTTGGTGAACA 59.638 45.455 0.00 0.00 0.00 3.18
636 675 3.006110 CACAGGCAGAATTTGGTGAACAT 59.994 43.478 0.00 0.00 0.00 2.71
637 676 3.642848 ACAGGCAGAATTTGGTGAACATT 59.357 39.130 0.00 0.00 0.00 2.71
638 677 4.101430 ACAGGCAGAATTTGGTGAACATTT 59.899 37.500 0.00 0.00 0.00 2.32
639 678 4.449743 CAGGCAGAATTTGGTGAACATTTG 59.550 41.667 0.00 0.00 0.00 2.32
640 679 4.101430 AGGCAGAATTTGGTGAACATTTGT 59.899 37.500 0.00 0.00 0.00 2.83
641 680 4.815846 GGCAGAATTTGGTGAACATTTGTT 59.184 37.500 0.00 0.00 41.64 2.83
642 681 5.296531 GGCAGAATTTGGTGAACATTTGTTT 59.703 36.000 0.00 0.00 38.56 2.83
643 682 6.193761 GCAGAATTTGGTGAACATTTGTTTG 58.806 36.000 0.00 0.00 38.56 2.93
644 683 6.193761 CAGAATTTGGTGAACATTTGTTTGC 58.806 36.000 0.00 0.00 38.56 3.68
645 684 5.879223 AGAATTTGGTGAACATTTGTTTGCA 59.121 32.000 0.00 0.00 38.56 4.08
646 685 4.935885 TTTGGTGAACATTTGTTTGCAC 57.064 36.364 0.00 2.62 38.56 4.57
647 686 3.599730 TGGTGAACATTTGTTTGCACA 57.400 38.095 13.82 0.00 38.56 4.57
648 687 3.930336 TGGTGAACATTTGTTTGCACAA 58.070 36.364 13.82 3.90 41.39 3.33
663 702 8.476657 TGTTTGCACAAATCACATTATTATGG 57.523 30.769 0.00 0.00 32.85 2.74
664 703 8.309656 TGTTTGCACAAATCACATTATTATGGA 58.690 29.630 0.00 0.00 32.85 3.41
665 704 8.594687 GTTTGCACAAATCACATTATTATGGAC 58.405 33.333 0.00 0.00 32.85 4.02
666 705 7.401955 TGCACAAATCACATTATTATGGACA 57.598 32.000 0.00 0.00 36.01 4.02
667 706 7.482474 TGCACAAATCACATTATTATGGACAG 58.518 34.615 0.00 0.00 36.01 3.51
668 707 7.122501 TGCACAAATCACATTATTATGGACAGT 59.877 33.333 0.00 0.00 36.01 3.55
669 708 7.975616 GCACAAATCACATTATTATGGACAGTT 59.024 33.333 0.00 0.00 36.01 3.16
685 724 6.950545 TGGACAGTTAAATCACAAACTAACG 58.049 36.000 0.00 0.00 34.23 3.18
686 725 6.539464 TGGACAGTTAAATCACAAACTAACGT 59.461 34.615 0.00 0.00 34.23 3.99
687 726 7.710044 TGGACAGTTAAATCACAAACTAACGTA 59.290 33.333 0.00 0.00 34.23 3.57
688 727 8.006027 GGACAGTTAAATCACAAACTAACGTAC 58.994 37.037 0.00 0.00 34.23 3.67
689 728 8.652810 ACAGTTAAATCACAAACTAACGTACT 57.347 30.769 0.00 0.00 34.23 2.73
690 729 9.748708 ACAGTTAAATCACAAACTAACGTACTA 57.251 29.630 0.00 0.00 34.23 1.82
708 747 8.552083 ACGTACTAATTTTCTTTTAATCCCGT 57.448 30.769 0.00 0.00 0.00 5.28
709 748 9.002600 ACGTACTAATTTTCTTTTAATCCCGTT 57.997 29.630 0.00 0.00 0.00 4.44
710 749 9.269415 CGTACTAATTTTCTTTTAATCCCGTTG 57.731 33.333 0.00 0.00 0.00 4.10
711 750 9.069078 GTACTAATTTTCTTTTAATCCCGTTGC 57.931 33.333 0.00 0.00 0.00 4.17
712 751 7.662897 ACTAATTTTCTTTTAATCCCGTTGCA 58.337 30.769 0.00 0.00 0.00 4.08
713 752 8.145122 ACTAATTTTCTTTTAATCCCGTTGCAA 58.855 29.630 0.00 0.00 0.00 4.08
714 753 7.977789 AATTTTCTTTTAATCCCGTTGCAAT 57.022 28.000 0.59 0.00 0.00 3.56
715 754 6.777526 TTTTCTTTTAATCCCGTTGCAATG 57.222 33.333 11.90 11.90 0.00 2.82
716 755 3.843999 TCTTTTAATCCCGTTGCAATGC 58.156 40.909 13.42 0.00 0.00 3.56
717 756 3.256879 TCTTTTAATCCCGTTGCAATGCA 59.743 39.130 13.42 2.72 36.47 3.96
718 757 2.645730 TTAATCCCGTTGCAATGCAC 57.354 45.000 7.72 2.39 38.71 4.57
719 758 0.449786 TAATCCCGTTGCAATGCACG 59.550 50.000 7.72 14.71 38.71 5.34
720 759 2.211619 AATCCCGTTGCAATGCACGG 62.212 55.000 28.95 28.95 45.37 4.94
732 771 2.568090 GCACGGGCATTGTTCTGG 59.432 61.111 3.77 0.00 40.72 3.86
733 772 2.268076 GCACGGGCATTGTTCTGGT 61.268 57.895 3.77 0.00 40.72 4.00
746 785 8.076178 GGCATTGTTCTGGTATATAACAACATC 58.924 37.037 6.20 0.96 43.61 3.06
773 812 7.320399 ACACTACAGAATCGATATGTTCACAA 58.680 34.615 18.16 3.20 0.00 3.33
784 823 0.539438 TGTTCACAACCATGGGGAGC 60.539 55.000 18.09 10.32 38.05 4.70
851 891 5.749462 ACTAGCAGCAAATTCCAGTCTAAT 58.251 37.500 0.00 0.00 0.00 1.73
853 893 7.512992 ACTAGCAGCAAATTCCAGTCTAATAT 58.487 34.615 0.00 0.00 0.00 1.28
855 895 7.651027 AGCAGCAAATTCCAGTCTAATATTT 57.349 32.000 0.00 0.00 0.00 1.40
856 896 8.071177 AGCAGCAAATTCCAGTCTAATATTTT 57.929 30.769 0.00 0.00 0.00 1.82
895 936 7.732222 ATAGCAAATTCCAAAACCTTATCCA 57.268 32.000 0.00 0.00 0.00 3.41
911 952 1.497991 TCCAAAAGCTCGTCGTCTTG 58.502 50.000 0.00 0.00 0.00 3.02
922 963 3.423154 CGTCTTGTTCCCGCAGCC 61.423 66.667 0.00 0.00 0.00 4.85
943 984 4.154347 CCACCTCCCGCTGCTCTC 62.154 72.222 0.00 0.00 0.00 3.20
1287 1336 3.055819 AGTGCTACATCCTCGACATGTTT 60.056 43.478 9.90 0.00 35.95 2.83
1303 1352 0.538584 GTTTCCCTACCCCAGGTACG 59.461 60.000 0.00 0.00 43.80 3.67
1304 1353 0.116940 TTTCCCTACCCCAGGTACGT 59.883 55.000 0.00 0.00 43.80 3.57
1305 1354 1.006813 TTCCCTACCCCAGGTACGTA 58.993 55.000 0.00 0.00 43.80 3.57
1352 1425 6.500775 CAATCAAATTGCCGTGAATATGTC 57.499 37.500 0.00 0.00 32.92 3.06
1394 1469 6.480524 TGTGCTTGAATTGTGTATGTAGAC 57.519 37.500 0.00 0.00 0.00 2.59
1397 1475 7.821846 TGTGCTTGAATTGTGTATGTAGACATA 59.178 33.333 0.00 0.00 37.76 2.29
1409 1487 7.279981 GTGTATGTAGACATAATGGTTCTGCAA 59.720 37.037 3.96 0.00 40.18 4.08
1415 1493 7.230849 AGACATAATGGTTCTGCAATTTCAA 57.769 32.000 0.00 0.00 0.00 2.69
1420 1498 8.937884 CATAATGGTTCTGCAATTTCAATTTCA 58.062 29.630 0.00 0.00 0.00 2.69
1421 1499 7.804843 AATGGTTCTGCAATTTCAATTTCAA 57.195 28.000 0.00 0.00 0.00 2.69
1422 1500 7.989416 ATGGTTCTGCAATTTCAATTTCAAT 57.011 28.000 0.00 0.00 0.00 2.57
1423 1501 7.804843 TGGTTCTGCAATTTCAATTTCAATT 57.195 28.000 0.00 0.00 0.00 2.32
1424 1502 8.223177 TGGTTCTGCAATTTCAATTTCAATTT 57.777 26.923 0.00 0.00 0.00 1.82
1428 1506 7.577979 TCTGCAATTTCAATTTCAATTTCAGC 58.422 30.769 11.14 4.55 35.10 4.26
1429 1507 7.442969 TCTGCAATTTCAATTTCAATTTCAGCT 59.557 29.630 11.14 0.00 35.10 4.24
1432 1510 8.071368 GCAATTTCAATTTCAATTTCAGCTCAA 58.929 29.630 0.00 0.00 0.00 3.02
1443 1523 8.301730 TCAATTTCAGCTCAATTTCAATTGTC 57.698 30.769 5.13 5.91 44.66 3.18
1444 1524 7.927092 TCAATTTCAGCTCAATTTCAATTGTCA 59.073 29.630 5.13 0.00 44.66 3.58
1465 1545 9.730705 TTGTCAGAGTTTATCATGAATTTCTCT 57.269 29.630 0.00 8.55 0.00 3.10
1486 1566 7.110810 TCTCTTAGTGCTGTACTGTACTGTAT 58.889 38.462 26.22 9.02 40.65 2.29
1544 1624 1.080230 CCTGTCCTGAGTCGTGCAG 60.080 63.158 0.00 0.00 0.00 4.41
1647 1731 5.065613 AGCCAAATATTATGCAGGAAGGA 57.934 39.130 10.66 0.00 0.00 3.36
1649 1733 5.537674 AGCCAAATATTATGCAGGAAGGAAG 59.462 40.000 10.66 0.00 0.00 3.46
1650 1734 5.279156 GCCAAATATTATGCAGGAAGGAAGG 60.279 44.000 0.00 0.00 0.00 3.46
1651 1735 5.279156 CCAAATATTATGCAGGAAGGAAGGC 60.279 44.000 0.00 0.00 0.00 4.35
1652 1736 1.972872 ATTATGCAGGAAGGAAGGCG 58.027 50.000 0.00 0.00 0.00 5.52
1654 1738 0.178068 TATGCAGGAAGGAAGGCGTC 59.822 55.000 0.00 0.00 0.00 5.19
1655 1739 1.841302 ATGCAGGAAGGAAGGCGTCA 61.841 55.000 2.23 0.00 0.00 4.35
1656 1740 1.743252 GCAGGAAGGAAGGCGTCAG 60.743 63.158 2.23 0.00 0.00 3.51
1657 1741 1.674057 CAGGAAGGAAGGCGTCAGT 59.326 57.895 2.23 0.00 0.00 3.41
1658 1742 0.671781 CAGGAAGGAAGGCGTCAGTG 60.672 60.000 2.23 0.00 0.00 3.66
1659 1743 2.035442 GGAAGGAAGGCGTCAGTGC 61.035 63.158 2.23 0.00 0.00 4.40
1672 1757 4.098416 GCGTCAGTGCTGAAATTTATTCC 58.902 43.478 3.19 0.00 41.85 3.01
1673 1758 4.662145 CGTCAGTGCTGAAATTTATTCCC 58.338 43.478 3.19 0.00 41.85 3.97
1704 1789 7.994425 TGCATAAACTAGTCCTGAATTGAAA 57.006 32.000 0.00 0.00 0.00 2.69
1737 1828 3.262420 AGAGGATGCATGTTGTTCGTAC 58.738 45.455 2.46 0.00 0.00 3.67
1738 1829 2.351726 GAGGATGCATGTTGTTCGTACC 59.648 50.000 2.46 0.00 0.00 3.34
1739 1830 2.027192 AGGATGCATGTTGTTCGTACCT 60.027 45.455 2.46 0.00 0.00 3.08
1740 1831 3.196901 AGGATGCATGTTGTTCGTACCTA 59.803 43.478 2.46 0.00 0.00 3.08
1764 1855 3.252400 TCACATGATTTCGCAAATTGCC 58.748 40.909 12.80 0.00 41.12 4.52
1765 1856 2.994578 CACATGATTTCGCAAATTGCCA 59.005 40.909 12.80 4.35 41.12 4.92
1867 1958 0.743097 GCTTCAATGTCCTGCATCCC 59.257 55.000 0.00 0.00 36.67 3.85
1888 1979 3.810896 GGATGGGACGCGTTTGGC 61.811 66.667 15.53 0.00 38.69 4.52
1934 2025 3.950395 CCAGGTCATTTGAAATCTCCTCC 59.050 47.826 7.23 0.00 0.00 4.30
1935 2026 4.324874 CCAGGTCATTTGAAATCTCCTCCT 60.325 45.833 7.23 0.74 0.00 3.69
1938 2029 4.880696 GGTCATTTGAAATCTCCTCCTCTG 59.119 45.833 0.00 0.00 0.00 3.35
1939 2030 5.338708 GGTCATTTGAAATCTCCTCCTCTGA 60.339 44.000 0.00 0.00 0.00 3.27
1964 2058 8.258850 AGGTCTCTTTATATCGGGATTGTTAA 57.741 34.615 0.00 0.00 0.00 2.01
1994 2098 2.649190 TGGTAAGTTTGCTGTCTTGCA 58.351 42.857 0.00 0.00 41.65 4.08
1995 2099 3.221771 TGGTAAGTTTGCTGTCTTGCAT 58.778 40.909 0.00 0.00 42.96 3.96
2066 2170 1.531149 CACCCAAAGACTACAACTGCG 59.469 52.381 0.00 0.00 0.00 5.18
2080 2184 3.252665 CTGCGCGCAACATTGACCA 62.253 57.895 35.50 7.85 0.00 4.02
2261 2368 2.927553 GCACTTGCATTTCCAGTAGG 57.072 50.000 0.00 0.00 41.59 3.18
2262 2369 2.162681 GCACTTGCATTTCCAGTAGGT 58.837 47.619 0.00 0.00 41.59 3.08
2263 2370 2.558359 GCACTTGCATTTCCAGTAGGTT 59.442 45.455 0.00 0.00 41.59 3.50
2264 2371 3.612479 GCACTTGCATTTCCAGTAGGTTG 60.612 47.826 0.00 0.00 41.59 3.77
2265 2372 2.558359 ACTTGCATTTCCAGTAGGTTGC 59.442 45.455 0.00 0.00 37.10 4.17
2266 2373 2.284754 TGCATTTCCAGTAGGTTGCA 57.715 45.000 0.00 0.00 40.95 4.08
2270 2377 3.242739 GCATTTCCAGTAGGTTGCATACG 60.243 47.826 0.00 0.00 36.80 3.06
2291 2398 4.216257 ACGCAAAACATATCACTTCTTGCT 59.784 37.500 0.00 0.00 36.43 3.91
2292 2399 4.556135 CGCAAAACATATCACTTCTTGCTG 59.444 41.667 0.00 0.00 36.43 4.41
2320 2427 8.008513 TCCATTAGTTCTGCTACTAAGTAAGG 57.991 38.462 10.74 9.75 42.20 2.69
2324 2431 6.912951 AGTTCTGCTACTAAGTAAGGTTCA 57.087 37.500 0.00 0.00 0.00 3.18
2325 2432 7.483580 AGTTCTGCTACTAAGTAAGGTTCAT 57.516 36.000 0.00 0.00 0.00 2.57
2366 2473 7.816640 ACCAATATAGCAATATGTTTTAGCCG 58.183 34.615 0.00 0.00 0.00 5.52
2403 2510 0.395724 GGTCTAACCATGGGCCCAAG 60.396 60.000 32.58 26.17 38.42 3.61
2412 2519 3.052186 ACCATGGGCCCAAGTGTTATAAT 60.052 43.478 32.58 4.59 0.00 1.28
2418 2525 6.436027 TGGGCCCAAGTGTTATAATTTATGA 58.564 36.000 26.33 0.00 0.00 2.15
2419 2526 6.897966 TGGGCCCAAGTGTTATAATTTATGAA 59.102 34.615 26.33 0.00 0.00 2.57
2420 2527 7.400339 TGGGCCCAAGTGTTATAATTTATGAAA 59.600 33.333 26.33 0.00 0.00 2.69
2421 2528 7.709182 GGGCCCAAGTGTTATAATTTATGAAAC 59.291 37.037 19.95 0.00 0.00 2.78
2422 2529 8.254508 GGCCCAAGTGTTATAATTTATGAAACA 58.745 33.333 0.00 3.42 0.00 2.83
2455 2562 7.345653 ACAAGTTATCATAGATGAGACTTCCCA 59.654 37.037 15.67 0.00 41.29 4.37
2457 2564 7.905265 AGTTATCATAGATGAGACTTCCCATG 58.095 38.462 0.00 0.00 40.64 3.66
2458 2565 4.613925 TCATAGATGAGACTTCCCATGC 57.386 45.455 0.00 0.00 32.11 4.06
2487 2594 3.626930 TGTAGGGTGCTTGTTTTGACTT 58.373 40.909 0.00 0.00 0.00 3.01
2488 2595 4.020543 TGTAGGGTGCTTGTTTTGACTTT 58.979 39.130 0.00 0.00 0.00 2.66
2489 2596 4.464597 TGTAGGGTGCTTGTTTTGACTTTT 59.535 37.500 0.00 0.00 0.00 2.27
2490 2597 3.860641 AGGGTGCTTGTTTTGACTTTTG 58.139 40.909 0.00 0.00 0.00 2.44
2491 2598 3.513515 AGGGTGCTTGTTTTGACTTTTGA 59.486 39.130 0.00 0.00 0.00 2.69
2492 2599 4.162131 AGGGTGCTTGTTTTGACTTTTGAT 59.838 37.500 0.00 0.00 0.00 2.57
2493 2600 4.875536 GGGTGCTTGTTTTGACTTTTGATT 59.124 37.500 0.00 0.00 0.00 2.57
2494 2601 5.220643 GGGTGCTTGTTTTGACTTTTGATTG 60.221 40.000 0.00 0.00 0.00 2.67
2495 2602 5.220643 GGTGCTTGTTTTGACTTTTGATTGG 60.221 40.000 0.00 0.00 0.00 3.16
2507 2614 4.037923 ACTTTTGATTGGTCAGTGCGAAAT 59.962 37.500 0.00 0.00 35.39 2.17
2511 2618 3.758023 TGATTGGTCAGTGCGAAATCATT 59.242 39.130 9.00 0.00 33.50 2.57
2528 2635 7.497909 CGAAATCATTGGTATTAGTTGTACCCT 59.502 37.037 0.30 0.00 40.72 4.34
2535 2642 4.578928 GGTATTAGTTGTACCCTTGCCATG 59.421 45.833 0.00 0.00 36.43 3.66
2586 2693 7.444299 ACTTTTTCATGTACCATTGAAGCAAT 58.556 30.769 0.00 0.00 33.68 3.56
2587 2694 8.584157 ACTTTTTCATGTACCATTGAAGCAATA 58.416 29.630 0.00 0.00 33.68 1.90
2615 2722 8.319143 TGCTTTCTATAAGTCCAGTTTACAAC 57.681 34.615 0.00 0.00 0.00 3.32
2619 2726 8.524870 TTCTATAAGTCCAGTTTACAACGAAC 57.475 34.615 0.00 0.00 36.23 3.95
2620 2727 7.889469 TCTATAAGTCCAGTTTACAACGAACT 58.111 34.615 0.00 0.00 37.82 3.01
2629 2736 6.073927 CCAGTTTACAACGAACTTACTCCTTC 60.074 42.308 0.00 0.00 35.26 3.46
2634 2741 6.300354 ACAACGAACTTACTCCTTCATTTG 57.700 37.500 0.00 0.00 0.00 2.32
2635 2742 5.820947 ACAACGAACTTACTCCTTCATTTGT 59.179 36.000 0.00 0.00 0.00 2.83
2636 2743 6.987992 ACAACGAACTTACTCCTTCATTTGTA 59.012 34.615 0.00 0.00 0.00 2.41
2637 2744 7.496591 ACAACGAACTTACTCCTTCATTTGTAA 59.503 33.333 0.00 0.00 0.00 2.41
2638 2745 8.504005 CAACGAACTTACTCCTTCATTTGTAAT 58.496 33.333 0.00 0.00 0.00 1.89
2639 2746 8.617290 ACGAACTTACTCCTTCATTTGTAATT 57.383 30.769 0.00 0.00 0.00 1.40
2640 2747 9.715121 ACGAACTTACTCCTTCATTTGTAATTA 57.285 29.630 0.00 0.00 0.00 1.40
2641 2748 9.968743 CGAACTTACTCCTTCATTTGTAATTAC 57.031 33.333 8.75 8.75 0.00 1.89
2665 2772 6.127168 ACCACGAACTATGGATAGAATGTTGA 60.127 38.462 0.54 0.00 39.87 3.18
2669 2776 9.645059 ACGAACTATGGATAGAATGTTGATATG 57.355 33.333 0.54 0.00 34.50 1.78
2679 2786 5.640732 AGAATGTTGATATGAAAACGTGGC 58.359 37.500 0.00 0.00 0.00 5.01
2715 2822 4.351192 ACGAAACTGAAAATGTTCTGTGC 58.649 39.130 8.76 4.38 43.00 4.57
2729 2836 7.928307 ATGTTCTGTGCAGTACTTTGATTAT 57.072 32.000 9.67 0.00 31.14 1.28
2730 2837 7.364522 TGTTCTGTGCAGTACTTTGATTATC 57.635 36.000 9.67 0.00 31.14 1.75
2732 2839 7.118245 TGTTCTGTGCAGTACTTTGATTATCAG 59.882 37.037 9.67 0.00 31.14 2.90
2745 2852 7.557719 ACTTTGATTATCAGTGGTTCATTAGGG 59.442 37.037 0.00 0.00 0.00 3.53
2781 2888 5.709631 TGTGTTGCAGCTTAAATCATTAGGA 59.290 36.000 1.17 0.00 0.00 2.94
2823 2930 3.058914 GTGAAATCTCCACAACAGAACCG 60.059 47.826 0.00 0.00 34.81 4.44
2911 3018 5.881443 GTCAGAGCTACTAGTGTCCTTTCTA 59.119 44.000 5.39 0.00 0.00 2.10
2912 3019 6.037830 GTCAGAGCTACTAGTGTCCTTTCTAG 59.962 46.154 5.39 0.00 39.37 2.43
2918 3025 2.464157 AGTGTCCTTTCTAGCTGCAC 57.536 50.000 1.02 0.00 0.00 4.57
2929 3036 0.032952 TAGCTGCACCGTTCGAGTTT 59.967 50.000 1.02 0.00 0.00 2.66
2947 3054 8.777865 TCGAGTTTCAAAGTCTATCATTTGAT 57.222 30.769 3.46 0.00 43.05 2.57
3000 3107 2.686405 TGATCATCTGCTTTGCACCATC 59.314 45.455 0.00 0.00 33.79 3.51
3107 3214 1.079336 GGCTGAGGTACCGGTCAAC 60.079 63.158 12.40 4.13 0.00 3.18
3161 3268 7.201609 GCGAATGAAGAAGTAATTGATGGTGTA 60.202 37.037 0.00 0.00 0.00 2.90
3173 3280 1.463444 GATGGTGTAAGTGAACGTGGC 59.537 52.381 0.00 0.00 0.00 5.01
3248 3380 7.734924 TTATCTATGTTCTGCCATGTCAATC 57.265 36.000 0.00 0.00 0.00 2.67
3303 3435 9.911788 AAGGCATATTAGATTATCCACCTTATG 57.088 33.333 0.00 0.00 32.22 1.90
3597 3733 4.713814 AGTGCAGTTTCTAGATCCAGATGA 59.286 41.667 0.00 0.00 0.00 2.92
3618 3754 8.049117 AGATGAACAATATTGAACTGCCTTCTA 58.951 33.333 22.16 5.28 0.00 2.10
3692 3828 3.585862 TCTAACATCTGAGGAACAACGC 58.414 45.455 0.00 0.00 0.00 4.84
3694 3830 0.033504 ACATCTGAGGAACAACGCGT 59.966 50.000 5.58 5.58 0.00 6.01
3706 3842 2.070028 ACAACGCGTGCATGTATGTTA 58.930 42.857 14.98 0.00 0.00 2.41
3892 4028 1.543429 CCAGCAACCGGGGAGATAATC 60.543 57.143 6.32 0.00 0.00 1.75
3950 4086 9.880064 GGTTTGTAAACTTATCTTTGTCTTCTC 57.120 33.333 7.36 0.00 38.89 2.87
3994 4130 2.125713 ATCATTGTCGCCGTCGCA 60.126 55.556 0.00 0.00 35.26 5.10
4034 4452 9.595357 GTAAAACTCAAATGCTACAAAGTCTAC 57.405 33.333 0.00 0.00 0.00 2.59
4125 4543 1.979855 TTGCTAAAGTTCAGCTGCCA 58.020 45.000 9.47 0.00 39.83 4.92
4198 4616 4.335416 TCCCCATTTCAGAGTTGCTTTAG 58.665 43.478 0.00 0.00 0.00 1.85
4209 4627 6.015434 TCAGAGTTGCTTTAGTCAGATACACA 60.015 38.462 0.00 0.00 0.00 3.72
4244 4662 8.849168 CATGGTAGAATATTCAGTAAATTGGCA 58.151 33.333 17.56 0.00 0.00 4.92
4337 4761 6.096001 CCTGTATTTGCTCTTCCAAAGCTAAT 59.904 38.462 9.15 9.15 43.93 1.73
4673 5098 5.215160 GTTCTGCACACGATTTTTCTGATT 58.785 37.500 0.00 0.00 0.00 2.57
4681 5106 7.217070 GCACACGATTTTTCTGATTGACTAATC 59.783 37.037 0.00 0.00 42.45 1.75
4862 5287 3.428532 TGACTTCACTCCTACTGGTACC 58.571 50.000 4.43 4.43 34.23 3.34
4909 5334 3.624861 GCAGATTGGGTATGTGTTCTCAG 59.375 47.826 0.00 0.00 30.42 3.35
4979 5609 2.414481 CCGCAAAGATGACACAGAGAAG 59.586 50.000 0.00 0.00 0.00 2.85
5018 5648 3.072330 TGCATGTCACCTCCTTTAGTTGA 59.928 43.478 0.00 0.00 0.00 3.18
5075 5705 2.294512 GAGCAAACTGGAAAGAACTGGG 59.705 50.000 0.00 0.00 0.00 4.45
5205 5839 8.682710 TGTATTGAGTTTCATTTAGTTATGCCC 58.317 33.333 0.00 0.00 0.00 5.36
5206 5840 5.811399 TGAGTTTCATTTAGTTATGCCCG 57.189 39.130 0.00 0.00 0.00 6.13
5356 5991 8.079203 TGACGTTGTAATTTCAGCAATTTACAT 58.921 29.630 0.00 0.00 37.81 2.29
5458 6093 8.894409 TTTGTAATTTGCTCTGAAACGATATG 57.106 30.769 0.00 0.00 0.00 1.78
5495 6130 5.483811 TGCAATTGCTCATCATTGTTCATT 58.516 33.333 29.37 0.00 42.66 2.57
5547 6182 1.032014 TCCTTTCTGTGTTTGCCAGC 58.968 50.000 0.00 0.00 0.00 4.85
5680 6315 6.161381 GTGCATCCTTCTTTCACATTTGATT 58.839 36.000 0.00 0.00 0.00 2.57
5697 6332 8.025445 ACATTTGATTTTCAGTAAGAGATGTGC 58.975 33.333 0.00 0.00 0.00 4.57
5705 6340 3.612860 CAGTAAGAGATGTGCGTGTAACC 59.387 47.826 0.00 0.00 0.00 2.85
5823 6459 7.520798 TGGCATAAGGTCTGATTCTTATTCAT 58.479 34.615 11.15 0.00 34.91 2.57
5824 6460 7.446319 TGGCATAAGGTCTGATTCTTATTCATG 59.554 37.037 11.15 0.00 34.91 3.07
5943 6588 3.515330 AAGCCATTGTTATCAGCTTGC 57.485 42.857 0.00 0.00 41.97 4.01
5962 6607 2.917933 GCCACCTGCATACTGTATGAA 58.082 47.619 27.35 18.39 40.77 2.57
5984 6629 8.608844 TGAAATTTTGTTAAAGGTGTGTTTGT 57.391 26.923 0.00 0.00 0.00 2.83
6016 6661 7.865385 TGTACATGAAATCTAAAAACAACCTGC 59.135 33.333 0.00 0.00 0.00 4.85
6029 6674 2.587194 CCTGCGAGGCCTGAATCG 60.587 66.667 12.00 9.32 41.79 3.34
6034 6679 0.249911 GCGAGGCCTGAATCGGTATT 60.250 55.000 12.00 0.00 39.31 1.89
6084 6729 5.827797 ACAGTGGAATTTCAGCTCTTGTTAA 59.172 36.000 0.00 0.00 0.00 2.01
6095 6740 3.260884 AGCTCTTGTTAACCGGATTCAGA 59.739 43.478 9.46 0.25 0.00 3.27
6096 6741 4.000988 GCTCTTGTTAACCGGATTCAGAA 58.999 43.478 9.46 0.00 0.00 3.02
6097 6742 4.636206 GCTCTTGTTAACCGGATTCAGAAT 59.364 41.667 9.46 0.00 0.00 2.40
6098 6743 5.123979 GCTCTTGTTAACCGGATTCAGAATT 59.876 40.000 9.46 0.00 0.00 2.17
6099 6744 6.349363 GCTCTTGTTAACCGGATTCAGAATTT 60.349 38.462 9.46 0.00 0.00 1.82
6100 6745 7.141100 TCTTGTTAACCGGATTCAGAATTTC 57.859 36.000 9.46 0.00 0.00 2.17
6101 6746 6.712998 TCTTGTTAACCGGATTCAGAATTTCA 59.287 34.615 9.46 0.00 0.00 2.69
6102 6747 6.494893 TGTTAACCGGATTCAGAATTTCAG 57.505 37.500 9.46 0.00 0.00 3.02
6103 6748 6.234920 TGTTAACCGGATTCAGAATTTCAGA 58.765 36.000 9.46 0.00 0.00 3.27
6184 6829 4.146564 TGCTTGTATATCACGTAGGCCTA 58.853 43.478 8.91 8.91 0.00 3.93
6204 6849 9.080097 AGGCCTATAGTACACAAATCTAGTAAG 57.920 37.037 1.29 0.00 0.00 2.34
6205 6850 8.858094 GGCCTATAGTACACAAATCTAGTAAGT 58.142 37.037 0.00 0.00 0.00 2.24
6366 7100 2.930682 GTGGAGCTACTTCTTTAAGGCG 59.069 50.000 0.00 0.00 37.01 5.52
6482 7216 4.516698 GGTTTCTGCAGACTCAGATTCAAA 59.483 41.667 18.03 0.41 42.12 2.69
6574 7308 6.069440 TGGGTGATAGAAGTTTGGAGATTGAT 60.069 38.462 0.00 0.00 0.00 2.57
6575 7309 6.261826 GGGTGATAGAAGTTTGGAGATTGATG 59.738 42.308 0.00 0.00 0.00 3.07
6816 7550 8.538409 ACTAAAGGAAGCTGCATTAAATTTTG 57.462 30.769 1.02 0.00 0.00 2.44
6986 7720 9.606631 GGATGGATCATATAAAGATGGAACTAC 57.393 37.037 0.00 0.00 0.00 2.73
6990 7724 6.413783 TCATATAAAGATGGAACTACGGCA 57.586 37.500 0.00 0.00 0.00 5.69
7062 7796 1.621814 GCAAGGGTAGGTCACACAGTA 59.378 52.381 0.00 0.00 30.42 2.74
7162 7896 0.536006 AGAGTTGCCTGTCTGGTTGC 60.536 55.000 0.00 0.00 38.35 4.17
7164 7898 2.594303 TTGCCTGTCTGGTTGCGG 60.594 61.111 0.00 0.00 38.35 5.69
7181 7915 2.811431 TGCGGAACTTCTACCATGTTTG 59.189 45.455 0.00 0.00 0.00 2.93
7192 7926 5.865085 TCTACCATGTTTGAGCTAACAAGT 58.135 37.500 6.17 9.15 41.02 3.16
7193 7927 6.999950 TCTACCATGTTTGAGCTAACAAGTA 58.000 36.000 6.17 9.70 41.02 2.24
7194 7928 7.097192 TCTACCATGTTTGAGCTAACAAGTAG 58.903 38.462 22.41 22.41 42.70 2.57
7235 7969 2.650322 TGGTTTGGTGTGGAGAAAGAC 58.350 47.619 0.00 0.00 0.00 3.01
7284 8018 9.643693 CATACTGCCTTCTGTTTGAAATATTTT 57.356 29.630 1.43 0.00 33.79 1.82
7428 8162 8.138365 TGGATAACGTCTATTATTCTGTTTGC 57.862 34.615 0.00 0.00 0.00 3.68
7475 8209 5.356426 ACAAGGTTTAACACTGCAATTTCC 58.644 37.500 0.00 0.00 0.00 3.13
7530 8264 2.624316 AAATTCAGACATGCTGTGCG 57.376 45.000 14.21 0.00 45.14 5.34
7638 8372 4.235939 TGCGTCAGTTATGTGCAAAAAT 57.764 36.364 0.00 0.00 36.46 1.82
7698 8432 1.202475 TGCTGTAACGAGCAACTGTGA 60.202 47.619 0.00 0.00 46.05 3.58
7699 8433 1.457303 GCTGTAACGAGCAACTGTGAG 59.543 52.381 0.00 0.00 38.95 3.51
7700 8434 2.743938 CTGTAACGAGCAACTGTGAGT 58.256 47.619 0.00 0.00 0.00 3.41
7701 8435 2.469826 TGTAACGAGCAACTGTGAGTG 58.530 47.619 0.00 0.00 0.00 3.51
7724 8504 5.170021 GCACATTCACTTTAATCCATGCAA 58.830 37.500 0.00 0.00 0.00 4.08
7763 8543 5.647658 TGCATTCAGGTCATACTTTGGTAAG 59.352 40.000 0.00 0.00 37.40 2.34
7806 8586 4.933330 TCTCGTAAAGCTGGCATTAGTAG 58.067 43.478 0.00 0.00 0.00 2.57
7898 8678 2.366266 ACACCCAAACGTGTAGCTTCTA 59.634 45.455 0.00 0.00 45.08 2.10
7899 8679 2.735134 CACCCAAACGTGTAGCTTCTAC 59.265 50.000 0.00 0.00 0.00 2.59
7900 8680 2.289257 ACCCAAACGTGTAGCTTCTACC 60.289 50.000 0.00 0.00 0.00 3.18
7910 8690 5.867716 CGTGTAGCTTCTACCAGTAAACATT 59.132 40.000 0.00 0.00 0.00 2.71
8111 8892 2.957402 TGGCTCATGAACAGTTTCCT 57.043 45.000 0.00 0.00 0.00 3.36
8139 8920 2.301346 ACTCAAACCTGTCCTGCTTTG 58.699 47.619 0.00 0.00 0.00 2.77
8189 8970 8.529424 TGCTGATGGATTTAAGATGAAGATTT 57.471 30.769 0.00 0.00 0.00 2.17
8337 9140 5.721000 ACAAATAAGGGCATCTTTTGGATCA 59.279 36.000 10.25 0.00 36.93 2.92
8346 9149 5.423015 GCATCTTTTGGATCACTAGTCTGA 58.577 41.667 0.00 0.00 31.27 3.27
8353 9156 9.149225 CTTTTGGATCACTAGTCTGATATATGC 57.851 37.037 0.00 0.00 30.62 3.14
8359 9162 9.130661 GATCACTAGTCTGATATATGCCTATGT 57.869 37.037 0.00 0.00 30.62 2.29
8360 9163 8.885693 TCACTAGTCTGATATATGCCTATGTT 57.114 34.615 0.00 0.00 0.00 2.71
8377 9180 7.171167 TGCCTATGTTTTGAAATTTCACATGTG 59.829 33.333 20.35 20.18 36.83 3.21
8422 9228 9.346725 GGCATAAAGTATTTTGAACTCTTTCTG 57.653 33.333 0.00 0.00 40.09 3.02
8429 9235 8.831550 AGTATTTTGAACTCTTTCTGTTCTGTC 58.168 33.333 7.89 0.00 42.86 3.51
8661 9467 4.082125 ACTAGATCAACAAAAGGCAAGGG 58.918 43.478 0.00 0.00 0.00 3.95
8662 9468 2.962859 AGATCAACAAAAGGCAAGGGT 58.037 42.857 0.00 0.00 0.00 4.34
8769 9576 6.753744 GCAACAGATCTGTAAATTTCCATTCC 59.246 38.462 28.10 0.00 44.13 3.01
8810 9618 3.657398 ATTGGGATGCATCTCTTGTGA 57.343 42.857 26.47 3.64 0.00 3.58
8811 9619 3.438216 TTGGGATGCATCTCTTGTGAA 57.562 42.857 26.47 9.99 0.00 3.18
8812 9620 3.657398 TGGGATGCATCTCTTGTGAAT 57.343 42.857 26.47 0.00 0.00 2.57
8813 9621 3.972133 TGGGATGCATCTCTTGTGAATT 58.028 40.909 26.47 0.00 0.00 2.17
8814 9622 3.697542 TGGGATGCATCTCTTGTGAATTG 59.302 43.478 26.47 0.00 0.00 2.32
8815 9623 3.698040 GGGATGCATCTCTTGTGAATTGT 59.302 43.478 25.28 0.00 0.00 2.71
8816 9624 4.439700 GGGATGCATCTCTTGTGAATTGTG 60.440 45.833 25.28 0.00 0.00 3.33
8909 9717 5.254339 ACAGAAGCTTTTTGAAGAAGTGG 57.746 39.130 16.11 0.00 0.00 4.00
8951 9768 4.222145 TGGGCTACTAAAAGTACCACTGAG 59.778 45.833 0.00 0.00 26.25 3.35
9139 9956 5.412594 CACCTAACATATCAACTGTTGCACT 59.587 40.000 15.52 5.64 37.41 4.40
9140 9957 5.412594 ACCTAACATATCAACTGTTGCACTG 59.587 40.000 15.52 13.24 37.41 3.66
9141 9958 5.643348 CCTAACATATCAACTGTTGCACTGA 59.357 40.000 15.52 0.00 37.41 3.41
9148 9965 4.058124 TCAACTGTTGCACTGATGTAGAC 58.942 43.478 15.52 0.00 0.00 2.59
9172 9992 3.021356 CCCTGACCTGGGGTATCAA 57.979 57.895 0.00 0.00 43.45 2.57
9289 10126 8.345565 TCTGTTTTCTGCACTAGATTTTCTTTC 58.654 33.333 0.00 0.00 34.80 2.62
9293 10130 3.407698 TGCACTAGATTTTCTTTCGGCA 58.592 40.909 0.00 0.00 0.00 5.69
9304 10141 1.130373 TCTTTCGGCATGTCGAATTGC 59.870 47.619 33.15 11.39 46.50 3.56
9306 10143 0.447406 TTCGGCATGTCGAATTGCTG 59.553 50.000 29.85 18.89 43.12 4.41
9313 10150 0.512518 TGTCGAATTGCTGCGAGTTG 59.487 50.000 0.00 0.00 37.18 3.16
9339 10176 6.377996 TGAAAAGGTATGTTCTCCATGATTGG 59.622 38.462 0.00 0.00 45.15 3.16
9349 10190 1.776667 TCCATGATTGGGTCATCTCCC 59.223 52.381 0.00 0.00 45.76 4.30
9352 10193 3.373438 CCATGATTGGGTCATCTCCCTTT 60.373 47.826 0.00 0.00 45.76 3.11
9354 10195 3.373438 ATGATTGGGTCATCTCCCTTTGG 60.373 47.826 3.40 0.00 44.23 3.28
9355 10196 5.878879 ATGATTGGGTCATCTCCCTTTGGT 61.879 45.833 3.40 0.00 44.23 3.67
9382 10224 4.537135 ATCTGCTACTTTTTGTCTCGGA 57.463 40.909 0.00 0.00 0.00 4.55
9421 10263 2.711009 CCACCCAATCTATTCTAGGGCA 59.289 50.000 0.00 0.00 43.47 5.36
9515 10357 6.116806 TGTTTGAACTAACAGAGCAGGTTAA 58.883 36.000 0.00 0.00 33.31 2.01
9516 10358 6.260050 TGTTTGAACTAACAGAGCAGGTTAAG 59.740 38.462 0.00 0.00 33.31 1.85
9517 10359 5.801531 TGAACTAACAGAGCAGGTTAAGA 57.198 39.130 0.00 0.00 30.92 2.10
9518 10360 6.169557 TGAACTAACAGAGCAGGTTAAGAA 57.830 37.500 0.00 0.00 30.92 2.52
9550 10392 0.036022 AGAAGCAACTCAGGGAGTGC 59.964 55.000 0.00 6.24 42.59 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.436417 GGCACTGTGAGCTAATGGAAA 58.564 47.619 12.86 0.00 0.00 3.13
47 48 4.851558 CCGCTAGCAAGTTTTTGTTGTATC 59.148 41.667 16.45 0.00 36.65 2.24
136 137 2.740055 GGCGATATGCTCTGGCGG 60.740 66.667 0.00 0.00 45.43 6.13
173 174 4.157120 ATAGCGGGCCACGGACAC 62.157 66.667 4.39 0.00 44.51 3.67
188 192 2.413351 GCTCTCACAGCGCCGATA 59.587 61.111 2.29 0.00 38.76 2.92
213 217 1.374758 GGAGGGTTGTGACGAGCAG 60.375 63.158 4.23 0.00 0.00 4.24
232 236 4.580835 GGTGCAAGACTCCGAGAC 57.419 61.111 1.33 0.00 0.00 3.36
246 250 4.749245 AGATTACTCTTGCAAAACGGTG 57.251 40.909 0.00 0.00 0.00 4.94
287 291 4.036852 TCTCATTAGATAGACACCAGCACG 59.963 45.833 0.00 0.00 0.00 5.34
292 296 6.841229 ACCAGATTCTCATTAGATAGACACCA 59.159 38.462 0.00 0.00 0.00 4.17
295 299 8.001292 TCTCACCAGATTCTCATTAGATAGACA 58.999 37.037 0.00 0.00 0.00 3.41
298 302 8.408043 AGTCTCACCAGATTCTCATTAGATAG 57.592 38.462 0.00 0.00 0.00 2.08
300 304 7.344093 TGAAGTCTCACCAGATTCTCATTAGAT 59.656 37.037 0.00 0.00 0.00 1.98
304 308 5.752036 TGAAGTCTCACCAGATTCTCATT 57.248 39.130 0.00 0.00 0.00 2.57
348 352 8.950403 AATTTGACTTAGAACGAAACTAATGC 57.050 30.769 0.00 0.00 30.96 3.56
488 527 2.721425 ACGAAGAGGTGGTGGAAAAA 57.279 45.000 0.00 0.00 0.00 1.94
489 528 2.092861 TGAACGAAGAGGTGGTGGAAAA 60.093 45.455 0.00 0.00 0.00 2.29
490 529 1.487142 TGAACGAAGAGGTGGTGGAAA 59.513 47.619 0.00 0.00 0.00 3.13
491 530 1.124780 TGAACGAAGAGGTGGTGGAA 58.875 50.000 0.00 0.00 0.00 3.53
492 531 1.124780 TTGAACGAAGAGGTGGTGGA 58.875 50.000 0.00 0.00 0.00 4.02
493 532 2.076863 GATTGAACGAAGAGGTGGTGG 58.923 52.381 0.00 0.00 0.00 4.61
494 533 3.045601 AGATTGAACGAAGAGGTGGTG 57.954 47.619 0.00 0.00 0.00 4.17
495 534 3.557264 GGAAGATTGAACGAAGAGGTGGT 60.557 47.826 0.00 0.00 0.00 4.16
496 535 3.003480 GGAAGATTGAACGAAGAGGTGG 58.997 50.000 0.00 0.00 0.00 4.61
497 536 3.664107 TGGAAGATTGAACGAAGAGGTG 58.336 45.455 0.00 0.00 0.00 4.00
498 537 4.256920 CATGGAAGATTGAACGAAGAGGT 58.743 43.478 0.00 0.00 0.00 3.85
499 538 4.256920 ACATGGAAGATTGAACGAAGAGG 58.743 43.478 0.00 0.00 0.00 3.69
500 539 8.706936 CATATACATGGAAGATTGAACGAAGAG 58.293 37.037 0.00 0.00 0.00 2.85
501 540 8.421002 TCATATACATGGAAGATTGAACGAAGA 58.579 33.333 0.00 0.00 32.61 2.87
502 541 8.593492 TCATATACATGGAAGATTGAACGAAG 57.407 34.615 0.00 0.00 32.61 3.79
537 576 9.802039 TGGTTCACAAGGTAAGTAAATTAAGAT 57.198 29.630 0.00 0.00 0.00 2.40
538 577 9.629878 TTGGTTCACAAGGTAAGTAAATTAAGA 57.370 29.630 0.00 0.00 33.18 2.10
542 581 8.364894 GGAATTGGTTCACAAGGTAAGTAAATT 58.635 33.333 0.00 0.00 43.48 1.82
543 582 7.507616 TGGAATTGGTTCACAAGGTAAGTAAAT 59.492 33.333 0.00 0.00 43.48 1.40
544 583 6.834451 TGGAATTGGTTCACAAGGTAAGTAAA 59.166 34.615 0.00 0.00 43.48 2.01
545 584 6.263617 GTGGAATTGGTTCACAAGGTAAGTAA 59.736 38.462 0.00 0.00 43.48 2.24
546 585 5.766174 GTGGAATTGGTTCACAAGGTAAGTA 59.234 40.000 0.00 0.00 43.48 2.24
547 586 4.583073 GTGGAATTGGTTCACAAGGTAAGT 59.417 41.667 0.00 0.00 43.48 2.24
548 587 4.827284 AGTGGAATTGGTTCACAAGGTAAG 59.173 41.667 0.00 0.00 43.48 2.34
549 588 4.798882 AGTGGAATTGGTTCACAAGGTAA 58.201 39.130 0.00 0.00 43.48 2.85
550 589 4.447138 AGTGGAATTGGTTCACAAGGTA 57.553 40.909 0.00 0.00 43.48 3.08
551 590 3.312736 AGTGGAATTGGTTCACAAGGT 57.687 42.857 0.00 0.00 43.48 3.50
552 591 4.670896 AAAGTGGAATTGGTTCACAAGG 57.329 40.909 0.00 0.00 43.48 3.61
553 592 8.661352 AAATTAAAGTGGAATTGGTTCACAAG 57.339 30.769 0.00 0.00 43.48 3.16
554 593 9.535878 GTAAATTAAAGTGGAATTGGTTCACAA 57.464 29.630 0.00 0.00 44.54 3.33
555 594 8.919145 AGTAAATTAAAGTGGAATTGGTTCACA 58.081 29.630 0.00 0.00 36.01 3.58
556 595 9.758651 AAGTAAATTAAAGTGGAATTGGTTCAC 57.241 29.630 0.00 0.00 36.01 3.18
560 599 8.517056 CGGTAAGTAAATTAAAGTGGAATTGGT 58.483 33.333 0.00 0.00 0.00 3.67
561 600 8.732531 TCGGTAAGTAAATTAAAGTGGAATTGG 58.267 33.333 0.00 0.00 0.00 3.16
564 603 9.511272 AGTTCGGTAAGTAAATTAAAGTGGAAT 57.489 29.630 0.00 0.00 0.00 3.01
565 604 8.907222 AGTTCGGTAAGTAAATTAAAGTGGAA 57.093 30.769 0.00 0.00 0.00 3.53
566 605 8.907222 AAGTTCGGTAAGTAAATTAAAGTGGA 57.093 30.769 0.00 0.00 0.00 4.02
567 606 8.996271 AGAAGTTCGGTAAGTAAATTAAAGTGG 58.004 33.333 0.00 0.00 0.00 4.00
579 618 9.715121 TGTATTTTGATTAGAAGTTCGGTAAGT 57.285 29.630 0.00 0.00 0.00 2.24
582 621 9.158233 CCTTGTATTTTGATTAGAAGTTCGGTA 57.842 33.333 0.00 0.00 0.00 4.02
583 622 7.664318 ACCTTGTATTTTGATTAGAAGTTCGGT 59.336 33.333 0.00 0.00 0.00 4.69
584 623 8.040716 ACCTTGTATTTTGATTAGAAGTTCGG 57.959 34.615 0.00 0.00 0.00 4.30
594 633 8.034804 GCCTGTGAATTACCTTGTATTTTGATT 58.965 33.333 0.00 0.00 0.00 2.57
595 634 7.178274 TGCCTGTGAATTACCTTGTATTTTGAT 59.822 33.333 0.00 0.00 0.00 2.57
596 635 6.491745 TGCCTGTGAATTACCTTGTATTTTGA 59.508 34.615 0.00 0.00 0.00 2.69
597 636 6.686630 TGCCTGTGAATTACCTTGTATTTTG 58.313 36.000 0.00 0.00 0.00 2.44
598 637 6.719370 TCTGCCTGTGAATTACCTTGTATTTT 59.281 34.615 0.00 0.00 0.00 1.82
599 638 6.245408 TCTGCCTGTGAATTACCTTGTATTT 58.755 36.000 0.00 0.00 0.00 1.40
600 639 5.815581 TCTGCCTGTGAATTACCTTGTATT 58.184 37.500 0.00 0.00 0.00 1.89
601 640 5.435686 TCTGCCTGTGAATTACCTTGTAT 57.564 39.130 0.00 0.00 0.00 2.29
602 641 4.901197 TCTGCCTGTGAATTACCTTGTA 57.099 40.909 0.00 0.00 0.00 2.41
603 642 3.788227 TCTGCCTGTGAATTACCTTGT 57.212 42.857 0.00 0.00 0.00 3.16
604 643 5.649782 AATTCTGCCTGTGAATTACCTTG 57.350 39.130 0.00 0.00 40.88 3.61
605 644 5.047092 CCAAATTCTGCCTGTGAATTACCTT 60.047 40.000 0.00 0.00 41.54 3.50
606 645 4.463891 CCAAATTCTGCCTGTGAATTACCT 59.536 41.667 0.00 0.00 41.54 3.08
607 646 4.220602 ACCAAATTCTGCCTGTGAATTACC 59.779 41.667 0.00 0.00 41.54 2.85
608 647 5.048083 TCACCAAATTCTGCCTGTGAATTAC 60.048 40.000 0.00 0.00 41.54 1.89
609 648 5.076182 TCACCAAATTCTGCCTGTGAATTA 58.924 37.500 0.00 0.00 41.54 1.40
610 649 3.896888 TCACCAAATTCTGCCTGTGAATT 59.103 39.130 0.00 0.00 43.44 2.17
611 650 3.499338 TCACCAAATTCTGCCTGTGAAT 58.501 40.909 0.00 0.00 35.88 2.57
612 651 2.942804 TCACCAAATTCTGCCTGTGAA 58.057 42.857 0.00 0.00 30.44 3.18
613 652 2.622942 GTTCACCAAATTCTGCCTGTGA 59.377 45.455 0.00 0.00 0.00 3.58
614 653 2.361757 TGTTCACCAAATTCTGCCTGTG 59.638 45.455 0.00 0.00 0.00 3.66
615 654 2.665165 TGTTCACCAAATTCTGCCTGT 58.335 42.857 0.00 0.00 0.00 4.00
616 655 3.947910 ATGTTCACCAAATTCTGCCTG 57.052 42.857 0.00 0.00 0.00 4.85
617 656 4.101430 ACAAATGTTCACCAAATTCTGCCT 59.899 37.500 0.00 0.00 0.00 4.75
618 657 4.379652 ACAAATGTTCACCAAATTCTGCC 58.620 39.130 0.00 0.00 0.00 4.85
619 658 5.989551 AACAAATGTTCACCAAATTCTGC 57.010 34.783 0.00 0.00 31.64 4.26
620 659 6.183360 TGCAAACAAATGTTCACCAAATTCTG 60.183 34.615 0.00 0.00 37.25 3.02
621 660 5.879223 TGCAAACAAATGTTCACCAAATTCT 59.121 32.000 0.00 0.00 37.25 2.40
622 661 5.964751 GTGCAAACAAATGTTCACCAAATTC 59.035 36.000 0.00 0.00 37.25 2.17
623 662 5.413833 TGTGCAAACAAATGTTCACCAAATT 59.586 32.000 12.71 0.00 37.25 1.82
624 663 4.940046 TGTGCAAACAAATGTTCACCAAAT 59.060 33.333 12.71 0.00 37.25 2.32
625 664 4.318332 TGTGCAAACAAATGTTCACCAAA 58.682 34.783 12.71 0.04 37.25 3.28
626 665 3.930336 TGTGCAAACAAATGTTCACCAA 58.070 36.364 12.71 0.00 37.25 3.67
627 666 3.599730 TGTGCAAACAAATGTTCACCA 57.400 38.095 12.71 3.66 37.25 4.17
628 667 4.935885 TTTGTGCAAACAAATGTTCACC 57.064 36.364 12.71 1.63 37.25 4.02
629 668 5.958949 GTGATTTGTGCAAACAAATGTTCAC 59.041 36.000 18.66 16.74 46.56 3.18
630 669 5.640783 TGTGATTTGTGCAAACAAATGTTCA 59.359 32.000 18.66 10.56 46.56 3.18
631 670 6.104439 TGTGATTTGTGCAAACAAATGTTC 57.896 33.333 18.66 8.46 46.56 3.18
632 671 6.680874 ATGTGATTTGTGCAAACAAATGTT 57.319 29.167 18.66 0.00 46.56 2.71
633 672 6.680874 AATGTGATTTGTGCAAACAAATGT 57.319 29.167 18.66 0.12 46.56 2.71
637 676 8.933807 CCATAATAATGTGATTTGTGCAAACAA 58.066 29.630 0.00 0.00 32.51 2.83
638 677 8.309656 TCCATAATAATGTGATTTGTGCAAACA 58.690 29.630 0.00 0.00 32.51 2.83
639 678 8.594687 GTCCATAATAATGTGATTTGTGCAAAC 58.405 33.333 0.00 0.00 32.51 2.93
640 679 8.309656 TGTCCATAATAATGTGATTTGTGCAAA 58.690 29.630 0.00 0.00 34.46 3.68
641 680 7.834803 TGTCCATAATAATGTGATTTGTGCAA 58.165 30.769 0.00 0.00 0.00 4.08
642 681 7.122501 ACTGTCCATAATAATGTGATTTGTGCA 59.877 33.333 0.00 0.00 0.00 4.57
643 682 7.483307 ACTGTCCATAATAATGTGATTTGTGC 58.517 34.615 0.00 0.00 0.00 4.57
659 698 8.714179 CGTTAGTTTGTGATTTAACTGTCCATA 58.286 33.333 0.00 0.00 36.16 2.74
660 699 7.227910 ACGTTAGTTTGTGATTTAACTGTCCAT 59.772 33.333 0.00 0.00 36.16 3.41
661 700 6.539464 ACGTTAGTTTGTGATTTAACTGTCCA 59.461 34.615 0.00 0.00 36.16 4.02
662 701 6.951643 ACGTTAGTTTGTGATTTAACTGTCC 58.048 36.000 0.00 0.00 36.16 4.02
663 702 8.758715 AGTACGTTAGTTTGTGATTTAACTGTC 58.241 33.333 0.00 0.00 36.16 3.51
664 703 8.652810 AGTACGTTAGTTTGTGATTTAACTGT 57.347 30.769 0.00 0.00 36.16 3.55
682 721 9.002600 ACGGGATTAAAAGAAAATTAGTACGTT 57.997 29.630 0.00 0.00 0.00 3.99
683 722 8.552083 ACGGGATTAAAAGAAAATTAGTACGT 57.448 30.769 0.00 0.00 0.00 3.57
684 723 9.269415 CAACGGGATTAAAAGAAAATTAGTACG 57.731 33.333 0.00 0.00 0.00 3.67
685 724 9.069078 GCAACGGGATTAAAAGAAAATTAGTAC 57.931 33.333 0.00 0.00 0.00 2.73
686 725 8.794553 TGCAACGGGATTAAAAGAAAATTAGTA 58.205 29.630 0.00 0.00 0.00 1.82
687 726 7.662897 TGCAACGGGATTAAAAGAAAATTAGT 58.337 30.769 0.00 0.00 0.00 2.24
688 727 8.527567 TTGCAACGGGATTAAAAGAAAATTAG 57.472 30.769 0.00 0.00 0.00 1.73
689 728 8.930760 CATTGCAACGGGATTAAAAGAAAATTA 58.069 29.630 0.00 0.00 0.00 1.40
690 729 7.572910 GCATTGCAACGGGATTAAAAGAAAATT 60.573 33.333 0.00 0.00 0.00 1.82
691 730 6.128309 GCATTGCAACGGGATTAAAAGAAAAT 60.128 34.615 0.00 0.00 0.00 1.82
692 731 5.178438 GCATTGCAACGGGATTAAAAGAAAA 59.822 36.000 0.00 0.00 0.00 2.29
693 732 4.688413 GCATTGCAACGGGATTAAAAGAAA 59.312 37.500 0.00 0.00 0.00 2.52
694 733 4.241681 GCATTGCAACGGGATTAAAAGAA 58.758 39.130 0.00 0.00 0.00 2.52
695 734 3.256879 TGCATTGCAACGGGATTAAAAGA 59.743 39.130 9.33 0.00 34.76 2.52
696 735 3.367630 GTGCATTGCAACGGGATTAAAAG 59.632 43.478 13.94 0.00 41.47 2.27
697 736 3.321497 GTGCATTGCAACGGGATTAAAA 58.679 40.909 13.94 0.00 41.47 1.52
698 737 2.669670 CGTGCATTGCAACGGGATTAAA 60.670 45.455 13.94 0.00 41.47 1.52
699 738 1.135546 CGTGCATTGCAACGGGATTAA 60.136 47.619 13.94 0.00 41.47 1.40
700 739 0.449786 CGTGCATTGCAACGGGATTA 59.550 50.000 13.94 0.00 41.47 1.75
701 740 1.212490 CGTGCATTGCAACGGGATT 59.788 52.632 13.94 0.00 41.47 3.01
702 741 2.699768 CCGTGCATTGCAACGGGAT 61.700 57.895 29.18 0.00 43.66 3.85
703 742 3.361158 CCGTGCATTGCAACGGGA 61.361 61.111 29.18 5.00 43.66 5.14
706 745 4.340019 TGCCCGTGCATTGCAACG 62.340 61.111 13.94 17.64 44.23 4.10
715 754 0.958382 TACCAGAACAATGCCCGTGC 60.958 55.000 0.00 0.00 38.26 5.34
716 755 1.750193 ATACCAGAACAATGCCCGTG 58.250 50.000 0.00 0.00 0.00 4.94
717 756 3.857157 ATATACCAGAACAATGCCCGT 57.143 42.857 0.00 0.00 0.00 5.28
718 757 5.060506 TGTTATATACCAGAACAATGCCCG 58.939 41.667 0.00 0.00 35.47 6.13
719 758 6.320164 TGTTGTTATATACCAGAACAATGCCC 59.680 38.462 4.50 0.00 46.76 5.36
720 759 7.328277 TGTTGTTATATACCAGAACAATGCC 57.672 36.000 4.50 0.00 46.76 4.40
721 760 8.840321 AGATGTTGTTATATACCAGAACAATGC 58.160 33.333 4.50 0.00 46.76 3.56
725 764 9.811995 GTGTAGATGTTGTTATATACCAGAACA 57.188 33.333 1.01 1.01 36.59 3.18
746 785 8.129211 TGTGAACATATCGATTCTGTAGTGTAG 58.871 37.037 1.71 0.00 0.00 2.74
773 812 2.852449 TGAAAATAGAGCTCCCCATGGT 59.148 45.455 10.93 0.00 0.00 3.55
862 902 8.192110 GGTTTTGGAATTTGCTATACCGATTTA 58.808 33.333 0.00 0.00 0.00 1.40
895 936 1.865340 GGAACAAGACGACGAGCTTTT 59.135 47.619 0.00 2.84 0.00 2.27
941 982 4.263683 GGAGAAATATGAAGGGGATGGGAG 60.264 50.000 0.00 0.00 0.00 4.30
942 983 3.657727 GGAGAAATATGAAGGGGATGGGA 59.342 47.826 0.00 0.00 0.00 4.37
943 984 3.398967 TGGAGAAATATGAAGGGGATGGG 59.601 47.826 0.00 0.00 0.00 4.00
946 987 4.141158 GGTGTGGAGAAATATGAAGGGGAT 60.141 45.833 0.00 0.00 0.00 3.85
983 1024 4.902258 TCGGGTTGGGGTGGGTGA 62.902 66.667 0.00 0.00 0.00 4.02
984 1025 3.657350 ATCGGGTTGGGGTGGGTG 61.657 66.667 0.00 0.00 0.00 4.61
985 1026 3.657350 CATCGGGTTGGGGTGGGT 61.657 66.667 0.00 0.00 0.00 4.51
1340 1389 2.034179 TGGAGTAGCGACATATTCACGG 59.966 50.000 0.00 0.00 0.00 4.94
1394 1469 8.937884 TGAAATTGAAATTGCAGAACCATTATG 58.062 29.630 0.00 0.00 30.49 1.90
1397 1475 7.804843 TTGAAATTGAAATTGCAGAACCATT 57.195 28.000 0.00 0.00 35.44 3.16
1420 1498 8.145767 TCTGACAATTGAAATTGAGCTGAAATT 58.854 29.630 19.85 0.00 46.72 1.82
1421 1499 7.663827 TCTGACAATTGAAATTGAGCTGAAAT 58.336 30.769 19.85 0.00 46.72 2.17
1422 1500 7.041635 TCTGACAATTGAAATTGAGCTGAAA 57.958 32.000 19.85 0.00 46.72 2.69
1423 1501 6.263842 ACTCTGACAATTGAAATTGAGCTGAA 59.736 34.615 19.85 0.00 46.72 3.02
1424 1502 5.766670 ACTCTGACAATTGAAATTGAGCTGA 59.233 36.000 19.85 16.82 46.72 4.26
1465 1545 6.627243 CCAATACAGTACAGTACAGCACTAA 58.373 40.000 13.37 0.00 34.98 2.24
1527 1607 0.881796 TACTGCACGACTCAGGACAG 59.118 55.000 0.00 0.00 35.94 3.51
1544 1624 5.997129 ACTAAACTAGAGGCTCGTATCCTAC 59.003 44.000 9.22 0.00 33.24 3.18
1647 1731 1.609208 AATTTCAGCACTGACGCCTT 58.391 45.000 0.00 0.00 39.66 4.35
1649 1733 3.764885 ATAAATTTCAGCACTGACGCC 57.235 42.857 0.00 0.00 39.66 5.68
1650 1734 4.098416 GGAATAAATTTCAGCACTGACGC 58.902 43.478 0.00 0.00 39.66 5.19
1651 1735 4.438744 GGGGAATAAATTTCAGCACTGACG 60.439 45.833 0.00 0.00 39.66 4.35
1652 1736 4.142160 GGGGGAATAAATTTCAGCACTGAC 60.142 45.833 0.00 0.00 39.66 3.51
1654 1738 4.391405 GGGGGAATAAATTTCAGCACTG 57.609 45.455 0.00 0.00 0.00 3.66
1672 1757 1.420138 ACTAGTTTATGCATCCGGGGG 59.580 52.381 0.19 0.00 0.00 5.40
1673 1758 2.550208 GGACTAGTTTATGCATCCGGGG 60.550 54.545 0.19 0.00 0.00 5.73
1690 1775 3.916989 AGGGTAGGTTTCAATTCAGGACT 59.083 43.478 0.00 0.00 0.00 3.85
1704 1789 1.840635 GCATCCTCTTTCAGGGTAGGT 59.159 52.381 0.00 0.00 43.67 3.08
1737 1828 4.944962 TTGCGAAATCATGTGAACTAGG 57.055 40.909 0.00 0.00 0.00 3.02
1738 1829 6.237384 GCAATTTGCGAAATCATGTGAACTAG 60.237 38.462 5.49 0.00 31.71 2.57
1739 1830 5.572511 GCAATTTGCGAAATCATGTGAACTA 59.427 36.000 5.49 0.00 31.71 2.24
1740 1831 4.386652 GCAATTTGCGAAATCATGTGAACT 59.613 37.500 5.49 0.00 31.71 3.01
1867 1958 1.748879 AAACGCGTCCCATCCCATG 60.749 57.895 14.44 0.00 0.00 3.66
1906 1997 4.818546 AGATTTCAAATGACCTGGATAGCG 59.181 41.667 0.00 0.00 0.00 4.26
1934 2025 5.317808 TCCCGATATAAAGAGACCTCAGAG 58.682 45.833 0.00 0.00 0.00 3.35
1935 2026 5.320488 TCCCGATATAAAGAGACCTCAGA 57.680 43.478 0.00 0.00 0.00 3.27
1938 2029 6.347859 ACAATCCCGATATAAAGAGACCTC 57.652 41.667 0.00 0.00 0.00 3.85
1939 2030 6.749036 AACAATCCCGATATAAAGAGACCT 57.251 37.500 0.00 0.00 0.00 3.85
1985 2089 5.765176 TCATTCAGAAACAATGCAAGACAG 58.235 37.500 0.00 0.00 32.17 3.51
2051 2155 0.878523 TGCGCGCAGTTGTAGTCTTT 60.879 50.000 33.09 0.00 0.00 2.52
2066 2170 0.387239 GGAAGTGGTCAATGTTGCGC 60.387 55.000 0.00 0.00 0.00 6.09
2080 2184 1.808411 CATTACCTGTGTGCGGAAGT 58.192 50.000 0.00 0.00 0.00 3.01
2264 2371 5.810525 AGAAGTGATATGTTTTGCGTATGC 58.189 37.500 0.00 0.00 43.20 3.14
2265 2372 6.195244 GCAAGAAGTGATATGTTTTGCGTATG 59.805 38.462 0.00 0.00 31.52 2.39
2266 2373 6.094048 AGCAAGAAGTGATATGTTTTGCGTAT 59.906 34.615 0.00 0.00 42.93 3.06
2270 2377 4.860907 CCAGCAAGAAGTGATATGTTTTGC 59.139 41.667 0.00 0.00 39.61 3.68
2278 2385 1.908619 TGGAGCCAGCAAGAAGTGATA 59.091 47.619 0.00 0.00 0.00 2.15
2291 2398 3.107601 AGTAGCAGAACTAATGGAGCCA 58.892 45.455 0.00 0.00 30.90 4.75
2292 2399 3.828875 AGTAGCAGAACTAATGGAGCC 57.171 47.619 0.00 0.00 30.90 4.70
2341 2448 7.663905 TCGGCTAAAACATATTGCTATATTGGT 59.336 33.333 0.00 0.00 0.00 3.67
2366 2473 4.583871 AGACCATGACCAAGATCTTGTTC 58.416 43.478 29.03 25.71 38.85 3.18
2397 2504 9.646427 TTGTTTCATAAATTATAACACTTGGGC 57.354 29.630 1.93 0.00 0.00 5.36
2418 2525 9.959721 ATCTATGATAACTTGTACCAGTTGTTT 57.040 29.630 19.74 9.38 37.57 2.83
2419 2526 9.383519 CATCTATGATAACTTGTACCAGTTGTT 57.616 33.333 19.74 9.09 37.57 2.83
2420 2527 8.758829 TCATCTATGATAACTTGTACCAGTTGT 58.241 33.333 19.74 14.37 37.57 3.32
2421 2528 9.254133 CTCATCTATGATAACTTGTACCAGTTG 57.746 37.037 19.74 4.81 34.41 3.16
2422 2529 9.201989 TCTCATCTATGATAACTTGTACCAGTT 57.798 33.333 15.84 15.84 36.02 3.16
2455 2562 1.382522 CACCCTACAAAGCATCGCAT 58.617 50.000 0.00 0.00 0.00 4.73
2457 2564 1.026718 AGCACCCTACAAAGCATCGC 61.027 55.000 0.00 0.00 0.00 4.58
2458 2565 1.131126 CAAGCACCCTACAAAGCATCG 59.869 52.381 0.00 0.00 0.00 3.84
2487 2594 3.567585 TGATTTCGCACTGACCAATCAAA 59.432 39.130 0.00 0.00 33.15 2.69
2488 2595 3.145286 TGATTTCGCACTGACCAATCAA 58.855 40.909 0.00 0.00 33.15 2.57
2489 2596 2.777094 TGATTTCGCACTGACCAATCA 58.223 42.857 0.00 0.00 33.48 2.57
2490 2597 4.100529 CAATGATTTCGCACTGACCAATC 58.899 43.478 0.00 0.00 0.00 2.67
2491 2598 3.119388 CCAATGATTTCGCACTGACCAAT 60.119 43.478 0.00 0.00 0.00 3.16
2492 2599 2.228582 CCAATGATTTCGCACTGACCAA 59.771 45.455 0.00 0.00 0.00 3.67
2493 2600 1.811965 CCAATGATTTCGCACTGACCA 59.188 47.619 0.00 0.00 0.00 4.02
2494 2601 1.812571 ACCAATGATTTCGCACTGACC 59.187 47.619 0.00 0.00 0.00 4.02
2495 2602 4.882671 ATACCAATGATTTCGCACTGAC 57.117 40.909 0.00 0.00 0.00 3.51
2507 2614 5.883673 GCAAGGGTACAACTAATACCAATGA 59.116 40.000 3.74 0.00 43.48 2.57
2511 2618 3.587951 TGGCAAGGGTACAACTAATACCA 59.412 43.478 3.74 0.00 43.48 3.25
2535 2642 7.936799 TCAGGCTATGAGTCATGGAACATGC 62.937 48.000 19.74 9.71 36.81 4.06
2586 2693 6.869206 AACTGGACTTATAGAAAGCAGGTA 57.131 37.500 0.00 0.00 0.00 3.08
2587 2694 5.763876 AACTGGACTTATAGAAAGCAGGT 57.236 39.130 0.00 0.00 0.00 4.00
2615 2722 9.968743 GTAATTACAAATGAAGGAGTAAGTTCG 57.031 33.333 10.81 0.00 30.87 3.95
2619 2726 8.388103 CGTGGTAATTACAAATGAAGGAGTAAG 58.612 37.037 17.16 0.00 30.87 2.34
2620 2727 8.095792 TCGTGGTAATTACAAATGAAGGAGTAA 58.904 33.333 17.16 0.00 0.00 2.24
2629 2736 8.203937 TCCATAGTTCGTGGTAATTACAAATG 57.796 34.615 17.16 9.98 37.96 2.32
2634 2741 9.924650 ATTCTATCCATAGTTCGTGGTAATTAC 57.075 33.333 7.09 7.09 37.96 1.89
2635 2742 9.923143 CATTCTATCCATAGTTCGTGGTAATTA 57.077 33.333 0.00 0.00 37.96 1.40
2636 2743 8.429641 ACATTCTATCCATAGTTCGTGGTAATT 58.570 33.333 0.00 0.00 37.96 1.40
2637 2744 7.963532 ACATTCTATCCATAGTTCGTGGTAAT 58.036 34.615 0.00 0.00 37.96 1.89
2638 2745 7.356089 ACATTCTATCCATAGTTCGTGGTAA 57.644 36.000 0.00 0.00 37.96 2.85
2639 2746 6.971726 ACATTCTATCCATAGTTCGTGGTA 57.028 37.500 0.00 0.00 37.96 3.25
2640 2747 5.871396 ACATTCTATCCATAGTTCGTGGT 57.129 39.130 0.00 0.00 37.96 4.16
2641 2748 6.280643 TCAACATTCTATCCATAGTTCGTGG 58.719 40.000 0.00 0.00 38.11 4.94
2665 2772 4.447389 GCAAAAACAGCCACGTTTTCATAT 59.553 37.500 9.02 0.00 45.85 1.78
2669 2776 1.006494 CGCAAAAACAGCCACGTTTTC 60.006 47.619 9.02 0.00 45.85 2.29
2679 2786 3.001168 CAGTTTCGTTTCCGCAAAAACAG 60.001 43.478 10.50 4.84 38.73 3.16
2685 2792 3.489180 TTTTCAGTTTCGTTTCCGCAA 57.511 38.095 0.00 0.00 0.00 4.85
2688 2795 5.171337 CAGAACATTTTCAGTTTCGTTTCCG 59.829 40.000 0.00 0.00 33.72 4.30
2699 2806 5.679734 AGTACTGCACAGAACATTTTCAG 57.320 39.130 4.31 0.00 33.72 3.02
2715 2822 7.905604 TGAACCACTGATAATCAAAGTACTG 57.094 36.000 0.00 0.00 0.00 2.74
2729 2836 2.352561 TCCCCCTAATGAACCACTGA 57.647 50.000 0.00 0.00 0.00 3.41
2730 2837 2.936202 CATCCCCCTAATGAACCACTG 58.064 52.381 0.00 0.00 0.00 3.66
2732 2839 1.215423 AGCATCCCCCTAATGAACCAC 59.785 52.381 0.00 0.00 0.00 4.16
2745 2852 1.340889 TGCAACACAAGAAAGCATCCC 59.659 47.619 0.00 0.00 0.00 3.85
2781 2888 5.928976 TCACGATCCCAGTCATATGAAAAT 58.071 37.500 7.07 0.00 0.00 1.82
2823 2930 3.396260 TGCGTCCATTTATAGTAGGCC 57.604 47.619 0.00 0.00 0.00 5.19
2911 3018 1.222115 GAAACTCGAACGGTGCAGCT 61.222 55.000 14.92 0.00 0.00 4.24
2912 3019 1.204312 GAAACTCGAACGGTGCAGC 59.796 57.895 5.64 5.64 0.00 5.25
2918 3025 4.921515 TGATAGACTTTGAAACTCGAACGG 59.078 41.667 0.00 0.00 0.00 4.44
2958 3065 9.725019 TGATCACTTGAAACAGAGTAAATACAT 57.275 29.630 0.00 0.00 0.00 2.29
2969 3076 5.624344 AAGCAGATGATCACTTGAAACAG 57.376 39.130 11.42 0.00 0.00 3.16
2978 3085 1.814394 TGGTGCAAAGCAGATGATCAC 59.186 47.619 0.00 0.00 40.08 3.06
3008 3115 9.515226 ACTAAGCACATAAAAACAGAATCCTAA 57.485 29.630 0.00 0.00 0.00 2.69
3009 3116 8.946085 CACTAAGCACATAAAAACAGAATCCTA 58.054 33.333 0.00 0.00 0.00 2.94
3161 3268 1.435577 GATAACCGCCACGTTCACTT 58.564 50.000 0.00 0.00 0.00 3.16
3173 3280 9.257651 CTTACCTTTCTTATAACAGGATAACCG 57.742 37.037 7.37 0.00 41.83 4.44
3248 3380 1.656441 GGTGCTGAGCAACAGGTTG 59.344 57.895 19.08 7.77 46.68 3.77
3303 3435 2.470999 CGCATTGGCTACACAACAAAAC 59.529 45.455 0.00 0.00 38.10 2.43
3597 3733 9.860898 GAAAATAGAAGGCAGTTCAATATTGTT 57.139 29.630 14.97 0.38 37.67 2.83
3618 3754 6.152323 ACAACAAGATATCTGCAGCAGAAAAT 59.848 34.615 28.78 23.15 44.04 1.82
3950 4086 5.814705 TGCAAAACCCAACATTAAAAGACAG 59.185 36.000 0.00 0.00 0.00 3.51
4125 4543 9.178758 GGAAACTGAAGTAGACAAATTGGATAT 57.821 33.333 0.00 0.00 0.00 1.63
4198 4616 4.150897 TGCCCCTTTATGTGTATCTGAC 57.849 45.455 0.00 0.00 0.00 3.51
4209 4627 7.102518 TGAATATTCTACCATGCCCCTTTAT 57.897 36.000 16.24 0.00 0.00 1.40
4244 4662 7.661040 CAGAGATAACAACCCAAACTTCATTT 58.339 34.615 0.00 0.00 0.00 2.32
4300 4718 7.676947 AGAGCAAATACAGGTGTAAAACTAGA 58.323 34.615 0.00 0.00 33.76 2.43
4337 4761 4.491676 CCGTAGCTGCAAAGTAGTTAAGA 58.508 43.478 1.02 0.00 0.00 2.10
4673 5098 4.558226 ATGAGGTGTGCTTGATTAGTCA 57.442 40.909 0.00 0.00 0.00 3.41
4681 5106 2.086869 CCTGGTAATGAGGTGTGCTTG 58.913 52.381 0.00 0.00 0.00 4.01
4682 5107 1.705186 ACCTGGTAATGAGGTGTGCTT 59.295 47.619 0.00 0.00 42.56 3.91
4909 5334 3.911661 ACTCTCTGCACAAGAAATTGC 57.088 42.857 0.00 0.00 39.33 3.56
4979 5609 1.063031 GCAGCTTTCGGAAATTGTGC 58.937 50.000 3.24 9.34 0.00 4.57
5018 5648 6.544931 ACATGTATAAATGATGCAGAGCAGTT 59.455 34.615 10.00 0.00 43.65 3.16
5109 5739 0.470766 ACCCTCAAGTTGCAACGGTA 59.529 50.000 23.21 11.59 0.00 4.02
5110 5740 0.818040 GACCCTCAAGTTGCAACGGT 60.818 55.000 23.21 22.25 0.00 4.83
5111 5741 0.817634 TGACCCTCAAGTTGCAACGG 60.818 55.000 23.21 19.33 0.00 4.44
5112 5742 1.069022 CATGACCCTCAAGTTGCAACG 60.069 52.381 23.21 10.84 0.00 4.10
5113 5743 2.227388 CTCATGACCCTCAAGTTGCAAC 59.773 50.000 22.17 22.17 0.00 4.17
5309 5943 5.408299 GTCAAAAATTTACCAGCATGAACCC 59.592 40.000 0.00 0.00 39.69 4.11
5376 6011 9.880157 AAAACAGAACTTCTACAAGTACAAGTA 57.120 29.630 0.00 0.00 42.45 2.24
5377 6012 8.788325 AAAACAGAACTTCTACAAGTACAAGT 57.212 30.769 0.00 0.00 42.45 3.16
5380 6015 9.826574 ACATAAAACAGAACTTCTACAAGTACA 57.173 29.630 0.00 0.00 42.45 2.90
5437 6072 8.511321 ACAAACATATCGTTTCAGAGCAAATTA 58.489 29.630 0.00 0.00 44.78 1.40
5461 6096 8.999220 TGATGAGCAATTGCAATATTAAAACA 57.001 26.923 30.89 13.33 45.16 2.83
5495 6130 1.065926 CAAGGGCACAGCAGTCTATCA 60.066 52.381 0.00 0.00 0.00 2.15
5547 6182 6.653740 AGGAAAATGTAAGGGTTTAGAAGTCG 59.346 38.462 0.00 0.00 0.00 4.18
5680 6315 3.990092 ACACGCACATCTCTTACTGAAA 58.010 40.909 0.00 0.00 0.00 2.69
5697 6332 7.438160 TGCATGATATAGAAAAGAGGTTACACG 59.562 37.037 0.00 0.00 0.00 4.49
5823 6459 6.379988 GGTTTATAGAAGGGGAGATTTTTGCA 59.620 38.462 0.00 0.00 0.00 4.08
5824 6460 6.379988 TGGTTTATAGAAGGGGAGATTTTTGC 59.620 38.462 0.00 0.00 0.00 3.68
5924 6561 1.753073 GGCAAGCTGATAACAATGGCT 59.247 47.619 0.00 0.00 34.52 4.75
5943 6588 6.455360 AAATTTCATACAGTATGCAGGTGG 57.545 37.500 14.95 0.00 42.53 4.61
5954 6599 9.528018 ACACACCTTTAACAAAATTTCATACAG 57.472 29.630 0.00 0.00 0.00 2.74
6016 6661 1.867233 CAAATACCGATTCAGGCCTCG 59.133 52.381 0.00 3.04 33.69 4.63
6029 6674 8.688151 TGTTATTATGTTAGTTGGGCAAATACC 58.312 33.333 0.00 0.00 0.00 2.73
6034 6679 7.038659 GCAATGTTATTATGTTAGTTGGGCAA 58.961 34.615 0.00 0.00 0.00 4.52
6084 6729 5.365021 AGATCTGAAATTCTGAATCCGGT 57.635 39.130 0.00 0.00 0.00 5.28
6095 6740 7.791766 TCCCTGAGTATCCTAAGATCTGAAATT 59.208 37.037 0.00 0.00 33.67 1.82
6096 6741 7.234577 GTCCCTGAGTATCCTAAGATCTGAAAT 59.765 40.741 0.00 0.00 33.67 2.17
6097 6742 6.551601 GTCCCTGAGTATCCTAAGATCTGAAA 59.448 42.308 0.00 0.00 33.67 2.69
6098 6743 6.071984 GTCCCTGAGTATCCTAAGATCTGAA 58.928 44.000 0.00 0.00 33.67 3.02
6099 6744 5.458362 GGTCCCTGAGTATCCTAAGATCTGA 60.458 48.000 0.00 0.00 33.67 3.27
6100 6745 4.770010 GGTCCCTGAGTATCCTAAGATCTG 59.230 50.000 0.00 0.00 33.67 2.90
6101 6746 4.420552 TGGTCCCTGAGTATCCTAAGATCT 59.579 45.833 0.00 0.00 33.67 2.75
6102 6747 4.742012 TGGTCCCTGAGTATCCTAAGATC 58.258 47.826 0.00 0.00 33.67 2.75
6103 6748 4.834406 TGGTCCCTGAGTATCCTAAGAT 57.166 45.455 0.00 0.00 36.44 2.40
6128 6773 6.769512 AGCATAGTGAACCAGAAAGAGTAAA 58.230 36.000 0.00 0.00 0.00 2.01
6203 6848 7.806180 ACATGAGGCCAAAAGATATTACTACT 58.194 34.615 5.01 0.00 0.00 2.57
6204 6849 8.451908 AACATGAGGCCAAAAGATATTACTAC 57.548 34.615 5.01 0.00 0.00 2.73
6205 6850 9.120538 GAAACATGAGGCCAAAAGATATTACTA 57.879 33.333 5.01 0.00 0.00 1.82
6206 6851 7.836183 AGAAACATGAGGCCAAAAGATATTACT 59.164 33.333 5.01 0.00 0.00 2.24
6574 7308 3.415212 AGAACATAGAAGCAAGCAAGCA 58.585 40.909 3.19 0.00 36.85 3.91
6575 7309 4.431661 AAGAACATAGAAGCAAGCAAGC 57.568 40.909 0.00 0.00 0.00 4.01
6784 7518 6.749923 ATGCAGCTTCCTTTAGTAAAAGAG 57.250 37.500 0.00 0.00 44.14 2.85
6785 7519 8.630054 TTAATGCAGCTTCCTTTAGTAAAAGA 57.370 30.769 0.00 0.00 44.14 2.52
6816 7550 5.531634 TGAAAATGGTTCTGTTTCATCTGC 58.468 37.500 0.00 0.00 36.58 4.26
6826 7560 8.836413 TCTGTTAACTTACTGAAAATGGTTCTG 58.164 33.333 7.22 0.00 0.00 3.02
6986 7720 2.456119 GGCTCGACATCAGTTGCCG 61.456 63.158 0.00 0.00 32.37 5.69
6990 7724 0.687354 AGGTTGGCTCGACATCAGTT 59.313 50.000 0.00 0.00 0.00 3.16
7002 7736 1.583477 GAGCTGCTCAAAGGTTGGC 59.417 57.895 24.02 0.00 0.00 4.52
7062 7796 2.799126 TCACCCTTGTGACAACTGTT 57.201 45.000 0.00 0.00 46.40 3.16
7109 7843 3.302365 AGTTGCATGGTTTTCATTCCG 57.698 42.857 0.00 0.00 32.92 4.30
7111 7845 5.989551 AACAAGTTGCATGGTTTTCATTC 57.010 34.783 1.81 0.00 32.92 2.67
7162 7896 3.125316 GCTCAAACATGGTAGAAGTTCCG 59.875 47.826 0.00 0.00 0.00 4.30
7164 7898 6.426937 TGTTAGCTCAAACATGGTAGAAGTTC 59.573 38.462 0.00 0.00 34.50 3.01
7192 7926 8.434392 ACCAAACACCTCTGTTATCTTTTACTA 58.566 33.333 0.00 0.00 39.88 1.82
7193 7927 7.287810 ACCAAACACCTCTGTTATCTTTTACT 58.712 34.615 0.00 0.00 39.88 2.24
7194 7928 7.506328 ACCAAACACCTCTGTTATCTTTTAC 57.494 36.000 0.00 0.00 39.88 2.01
7284 8018 7.774625 TCCATACTGCAATCATCATGAGTTTTA 59.225 33.333 0.09 0.00 0.00 1.52
7428 8162 3.517100 TCCTGAATCTCCTCTGAAACCTG 59.483 47.826 0.00 0.00 0.00 4.00
7475 8209 3.557577 TTCACAAACTCCATCATTGCG 57.442 42.857 0.00 0.00 0.00 4.85
7587 8321 4.963318 ACTCTGTTCTGTCATCTTTGGA 57.037 40.909 0.00 0.00 0.00 3.53
7638 8372 7.517614 TTGCACAGATTTGAATAACTTGGTA 57.482 32.000 0.00 0.00 0.00 3.25
7699 8433 4.563976 GCATGGATTAAAGTGAATGTGCAC 59.436 41.667 10.75 10.75 39.05 4.57
7700 8434 4.220163 TGCATGGATTAAAGTGAATGTGCA 59.780 37.500 0.00 0.00 36.62 4.57
7701 8435 4.746729 TGCATGGATTAAAGTGAATGTGC 58.253 39.130 0.00 0.00 0.00 4.57
7717 8497 5.174398 GCATGAACGAAGAAATATTGCATGG 59.826 40.000 0.00 0.00 33.23 3.66
7724 8504 6.319658 ACCTGAATGCATGAACGAAGAAATAT 59.680 34.615 0.00 0.00 0.00 1.28
7763 8543 4.101741 AGAGATTCTGTGCCTACCAATACC 59.898 45.833 0.00 0.00 0.00 2.73
7850 8630 4.653801 ACCAAGCAACCTTTAGTTCCATTT 59.346 37.500 0.00 0.00 36.18 2.32
8139 8920 1.234615 TGCTCGCTTGGTACCAAAGC 61.235 55.000 30.48 30.48 37.64 3.51
8276 9061 9.896645 TCTCTAACATTTATGAGATCTTGCTTT 57.103 29.630 0.00 0.00 31.53 3.51
8279 9064 7.440556 TGCTCTCTAACATTTATGAGATCTTGC 59.559 37.037 0.00 0.00 35.39 4.01
8301 9086 5.646360 TGCCCTTATTTGTTAGTAACTGCTC 59.354 40.000 14.00 0.00 0.00 4.26
8337 9140 9.935241 CAAAACATAGGCATATATCAGACTAGT 57.065 33.333 0.00 0.00 0.00 2.57
8353 9156 8.815141 TCACATGTGAAATTTCAAAACATAGG 57.185 30.769 26.02 14.89 39.21 2.57
8394 9197 9.129209 GAAAGAGTTCAAAATACTTTATGCCAC 57.871 33.333 0.00 0.00 33.61 5.01
8396 9199 9.346725 CAGAAAGAGTTCAAAATACTTTATGCC 57.653 33.333 0.00 0.00 34.68 4.40
8413 9219 2.224402 GCCTGGACAGAACAGAAAGAGT 60.224 50.000 0.00 0.00 38.20 3.24
8422 9228 3.149196 TCATTCTTTGCCTGGACAGAAC 58.851 45.455 0.00 0.00 0.00 3.01
8429 9235 5.902613 TCAAATACTCATTCTTTGCCTGG 57.097 39.130 0.00 0.00 31.50 4.45
8685 9491 1.335145 GACCCGGGGAAAGATCGATA 58.665 55.000 27.92 0.00 0.00 2.92
8686 9492 1.408453 GGACCCGGGGAAAGATCGAT 61.408 60.000 27.92 0.00 0.00 3.59
8687 9493 2.062177 GGACCCGGGGAAAGATCGA 61.062 63.158 27.92 0.00 0.00 3.59
8699 9506 1.202582 CAACTACTCTGACAGGACCCG 59.797 57.143 1.81 0.00 0.00 5.28
8743 9550 6.839124 ATGGAAATTTACAGATCTGTTGCA 57.161 33.333 32.14 24.02 41.83 4.08
8747 9554 8.526147 CAAAGGAATGGAAATTTACAGATCTGT 58.474 33.333 30.11 30.11 46.87 3.41
8769 9576 7.225538 CCCAATAGCAGAGAATGTACTACAAAG 59.774 40.741 0.00 0.00 0.00 2.77
8810 9618 8.836268 TTGTTAAACGTAGGAGTATCACAATT 57.164 30.769 0.00 0.00 36.25 2.32
8811 9619 9.444600 AATTGTTAAACGTAGGAGTATCACAAT 57.555 29.630 0.00 0.00 36.25 2.71
8812 9620 8.836268 AATTGTTAAACGTAGGAGTATCACAA 57.164 30.769 0.00 0.00 36.25 3.33
8813 9621 8.836268 AAATTGTTAAACGTAGGAGTATCACA 57.164 30.769 0.00 0.00 36.25 3.58
8883 9691 7.128976 CACTTCTTCAAAAAGCTTCTGTAGAC 58.871 38.462 13.88 0.00 32.18 2.59
8887 9695 4.949856 TCCACTTCTTCAAAAAGCTTCTGT 59.050 37.500 0.00 0.00 32.18 3.41
8951 9768 2.802816 CAGGCGACATATTGAGTTAGGC 59.197 50.000 0.00 0.00 0.00 3.93
9139 9956 3.773119 GGTCAGGGTAAAGGTCTACATCA 59.227 47.826 0.00 0.00 0.00 3.07
9140 9957 4.031611 AGGTCAGGGTAAAGGTCTACATC 58.968 47.826 0.00 0.00 0.00 3.06
9141 9958 3.775316 CAGGTCAGGGTAAAGGTCTACAT 59.225 47.826 0.00 0.00 0.00 2.29
9172 9992 0.185901 AACTTGGTGCTGGTGGACAT 59.814 50.000 0.00 0.00 36.16 3.06
9289 10126 1.584483 GCAGCAATTCGACATGCCG 60.584 57.895 15.85 8.78 43.57 5.69
9293 10130 1.129251 CAACTCGCAGCAATTCGACAT 59.871 47.619 0.00 0.00 0.00 3.06
9304 10141 3.498397 ACATACCTTTTCACAACTCGCAG 59.502 43.478 0.00 0.00 0.00 5.18
9306 10143 4.213482 AGAACATACCTTTTCACAACTCGC 59.787 41.667 0.00 0.00 0.00 5.03
9313 10150 7.253422 CAATCATGGAGAACATACCTTTTCAC 58.747 38.462 0.00 0.00 37.84 3.18
9339 10176 7.229506 CAGATAAATAACCAAAGGGAGATGACC 59.770 40.741 0.00 0.00 38.05 4.02
9352 10193 9.515226 AGACAAAAAGTAGCAGATAAATAACCA 57.485 29.630 0.00 0.00 0.00 3.67
9354 10195 9.690434 CGAGACAAAAAGTAGCAGATAAATAAC 57.310 33.333 0.00 0.00 0.00 1.89
9355 10196 8.879759 CCGAGACAAAAAGTAGCAGATAAATAA 58.120 33.333 0.00 0.00 0.00 1.40
9382 10224 4.581409 GGGTGGTGTTGTGTAAAGTGTATT 59.419 41.667 0.00 0.00 0.00 1.89
9421 10263 5.102953 TCACCAACAGAATAAGCAGCTAT 57.897 39.130 0.00 0.00 0.00 2.97
9515 10357 9.487790 GAGTTGCTTCTATGCTTATATTCTTCT 57.512 33.333 0.00 0.00 0.00 2.85
9516 10358 9.265901 TGAGTTGCTTCTATGCTTATATTCTTC 57.734 33.333 0.00 0.00 0.00 2.87
9517 10359 9.270640 CTGAGTTGCTTCTATGCTTATATTCTT 57.729 33.333 0.00 0.00 0.00 2.52
9518 10360 7.877097 CCTGAGTTGCTTCTATGCTTATATTCT 59.123 37.037 0.00 0.00 0.00 2.40
9550 10392 1.833630 TCCTCACAGGAGTAGCAATGG 59.166 52.381 0.00 0.00 40.06 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.