Multiple sequence alignment - TraesCS3B01G019500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G019500 chr3B 100.000 7985 0 0 737 8721 8339237 8347221 0.000000e+00 14746.0
1 TraesCS3B01G019500 chr3B 100.000 478 0 0 1 478 8338501 8338978 0.000000e+00 883.0
2 TraesCS3B01G019500 chr3A 94.031 2865 136 19 737 3594 13504313 13501477 0.000000e+00 4311.0
3 TraesCS3B01G019500 chr3A 94.301 2316 75 19 4762 7070 13499822 13497557 0.000000e+00 3493.0
4 TraesCS3B01G019500 chr3A 94.286 1050 55 5 3636 4683 13501468 13500422 0.000000e+00 1602.0
5 TraesCS3B01G019500 chr3A 94.317 915 45 4 7073 7986 13497528 13496620 0.000000e+00 1395.0
6 TraesCS3B01G019500 chr3A 86.071 481 31 19 1 478 13504860 13504413 1.320000e-132 484.0
7 TraesCS3B01G019500 chr3A 78.010 573 97 23 6506 7069 14683125 14682573 5.050000e-87 333.0
8 TraesCS3B01G019500 chr3D 92.412 2649 112 28 5541 8153 6751429 6754024 0.000000e+00 3696.0
9 TraesCS3B01G019500 chr3D 96.971 1849 50 6 1750 3594 6747245 6749091 0.000000e+00 3099.0
10 TraesCS3B01G019500 chr3D 94.041 1074 51 5 3625 4697 6749088 6750149 0.000000e+00 1616.0
11 TraesCS3B01G019500 chr3D 98.217 729 12 1 4762 5489 6750697 6751425 0.000000e+00 1273.0
12 TraesCS3B01G019500 chr3D 91.519 566 45 3 737 1299 6746218 6746783 0.000000e+00 776.0
13 TraesCS3B01G019500 chr3D 92.670 382 13 8 8167 8545 6757191 6757560 3.580000e-148 536.0
14 TraesCS3B01G019500 chr3D 86.151 491 32 16 1 478 6745649 6746116 1.690000e-136 497.0
15 TraesCS3B01G019500 chr3D 77.000 700 120 31 6393 7070 6197107 6196427 6.440000e-96 363.0
16 TraesCS3B01G019500 chr3D 79.592 294 36 12 5883 6163 6197422 6197140 1.160000e-43 189.0
17 TraesCS3B01G019500 chr3D 85.714 105 7 4 104 200 6745259 6745363 4.310000e-18 104.0
18 TraesCS3B01G019500 chr3D 84.810 79 7 5 8339 8413 366228976 366228899 3.380000e-09 75.0
19 TraesCS3B01G019500 chr3D 97.436 39 0 1 8375 8413 497593923 497593886 2.030000e-06 65.8
20 TraesCS3B01G019500 chrUn 86.394 1514 149 32 2576 4052 49235874 49237367 0.000000e+00 1602.0
21 TraesCS3B01G019500 chrUn 81.308 1819 221 60 4763 6493 49238569 49240356 0.000000e+00 1365.0
22 TraesCS3B01G019500 chrUn 88.043 644 63 10 4065 4700 49237470 49238107 0.000000e+00 750.0
23 TraesCS3B01G019500 chrUn 85.674 712 80 12 1408 2102 285886995 285887701 0.000000e+00 730.0
24 TraesCS3B01G019500 chrUn 91.608 286 24 0 2104 2389 49235186 49235471 6.340000e-106 396.0
25 TraesCS3B01G019500 chrUn 91.818 220 17 1 6536 6755 49240360 49240578 1.100000e-78 305.0
26 TraesCS3B01G019500 chr7D 83.875 1693 172 60 2412 4052 40131303 40129660 0.000000e+00 1520.0
27 TraesCS3B01G019500 chr7D 80.914 1839 218 62 4763 6493 40128443 40126630 0.000000e+00 1328.0
28 TraesCS3B01G019500 chr7D 87.103 1039 104 18 1408 2422 40132574 40131542 0.000000e+00 1149.0
29 TraesCS3B01G019500 chr7D 87.957 656 59 12 4063 4700 40129557 40128904 0.000000e+00 756.0
30 TraesCS3B01G019500 chr7D 91.781 219 17 1 6537 6755 40126625 40126408 3.960000e-78 303.0
31 TraesCS3B01G019500 chr7D 82.927 82 8 5 8337 8413 49794963 49794883 1.570000e-07 69.4
32 TraesCS3B01G019500 chr7D 97.436 39 0 1 8375 8413 141563650 141563687 2.030000e-06 65.8
33 TraesCS3B01G019500 chr7A 83.392 1692 180 59 2412 4052 40049787 40048146 0.000000e+00 1474.0
34 TraesCS3B01G019500 chr7A 83.894 1397 160 31 4777 6133 40046908 40045537 0.000000e+00 1273.0
35 TraesCS3B01G019500 chr7A 86.622 1039 109 18 1408 2422 40051058 40050026 0.000000e+00 1122.0
36 TraesCS3B01G019500 chr7A 89.340 591 53 7 4118 4700 40047962 40047374 0.000000e+00 734.0
37 TraesCS3B01G019500 chr7A 93.151 219 14 1 6537 6755 40045183 40044966 3.930000e-83 320.0
38 TraesCS3B01G019500 chr7A 97.059 34 0 1 5440 5472 63057112 63057079 1.000000e-03 56.5
39 TraesCS3B01G019500 chr5B 86.122 526 51 14 4137 4660 51159182 51159687 1.660000e-151 547.0
40 TraesCS3B01G019500 chr5B 100.000 30 0 0 5440 5469 55523816 55523787 1.000000e-03 56.5
41 TraesCS3B01G019500 chr5B 82.609 69 4 4 8130 8190 444768595 444768663 4.000000e-03 54.7
42 TraesCS3B01G019500 chr5D 85.905 525 46 15 4137 4660 48671405 48671902 1.290000e-147 534.0
43 TraesCS3B01G019500 chr5D 90.323 124 12 0 5112 5235 48672110 48672233 7.010000e-36 163.0
44 TraesCS3B01G019500 chr5D 85.106 141 21 0 4898 5038 48671972 48672112 2.540000e-30 145.0
45 TraesCS3B01G019500 chr5D 96.774 31 1 0 8130 8160 104284639 104284669 1.600000e-02 52.8
46 TraesCS3B01G019500 chr5A 85.333 525 50 15 4137 4660 38131523 38132021 1.300000e-142 518.0
47 TraesCS3B01G019500 chr5A 89.516 124 13 0 5112 5235 38132217 38132340 3.260000e-34 158.0
48 TraesCS3B01G019500 chr5A 91.262 103 9 0 4936 5038 38132117 38132219 3.280000e-29 141.0
49 TraesCS3B01G019500 chr5A 94.595 37 1 1 5434 5469 526395799 526395763 1.000000e-03 56.5
50 TraesCS3B01G019500 chr5A 92.308 39 2 1 5434 5471 419210154 419210116 4.000000e-03 54.7
51 TraesCS3B01G019500 chr4A 88.851 296 29 3 5841 6133 645580521 645580227 2.310000e-95 361.0
52 TraesCS3B01G019500 chr4A 88.532 218 24 1 6538 6755 645579807 645579591 6.710000e-66 263.0
53 TraesCS3B01G019500 chr4A 88.158 76 8 1 8339 8413 5069766 5069691 1.210000e-13 89.8
54 TraesCS3B01G019500 chr6B 88.356 146 15 2 3348 3493 288940988 288941131 3.240000e-39 174.0
55 TraesCS3B01G019500 chr6A 90.667 75 7 0 8339 8413 133645936 133646010 5.570000e-17 100.0
56 TraesCS3B01G019500 chr2A 92.593 54 1 2 8130 8183 614579856 614579906 3.380000e-09 75.0
57 TraesCS3B01G019500 chr2D 82.716 81 8 5 8338 8413 38786802 38786723 5.650000e-07 67.6
58 TraesCS3B01G019500 chr2D 100.000 30 0 0 5439 5468 540008772 540008743 1.000000e-03 56.5
59 TraesCS3B01G019500 chr6D 85.484 62 4 4 8356 8413 472759490 472759550 9.450000e-05 60.2
60 TraesCS3B01G019500 chr2B 100.000 30 0 0 5436 5465 5704906 5704935 1.000000e-03 56.5
61 TraesCS3B01G019500 chr1D 100.000 29 0 0 5440 5468 163770427 163770455 4.000000e-03 54.7
62 TraesCS3B01G019500 chr4D 88.889 45 1 1 8120 8160 289339826 289339870 1.600000e-02 52.8
63 TraesCS3B01G019500 chr4B 87.755 49 1 2 8117 8160 22527346 22527298 1.600000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G019500 chr3B 8338501 8347221 8720 False 7814.500000 14746 100.000000 1 8721 2 chr3B.!!$F1 8720
1 TraesCS3B01G019500 chr3A 13496620 13504860 8240 True 2257.000000 4311 92.601200 1 7986 5 chr3A.!!$R2 7985
2 TraesCS3B01G019500 chr3A 14682573 14683125 552 True 333.000000 333 78.010000 6506 7069 1 chr3A.!!$R1 563
3 TraesCS3B01G019500 chr3D 6745259 6757560 12301 False 1449.625000 3696 92.211875 1 8545 8 chr3D.!!$F1 8544
4 TraesCS3B01G019500 chr3D 6196427 6197422 995 True 276.000000 363 78.296000 5883 7070 2 chr3D.!!$R3 1187
5 TraesCS3B01G019500 chrUn 49235186 49240578 5392 False 883.600000 1602 87.834200 2104 6755 5 chrUn.!!$F2 4651
6 TraesCS3B01G019500 chrUn 285886995 285887701 706 False 730.000000 730 85.674000 1408 2102 1 chrUn.!!$F1 694
7 TraesCS3B01G019500 chr7D 40126408 40132574 6166 True 1011.200000 1520 86.326000 1408 6755 5 chr7D.!!$R2 5347
8 TraesCS3B01G019500 chr7A 40044966 40051058 6092 True 984.600000 1474 87.279800 1408 6755 5 chr7A.!!$R2 5347
9 TraesCS3B01G019500 chr5B 51159182 51159687 505 False 547.000000 547 86.122000 4137 4660 1 chr5B.!!$F1 523
10 TraesCS3B01G019500 chr5D 48671405 48672233 828 False 280.666667 534 87.111333 4137 5235 3 chr5D.!!$F2 1098
11 TraesCS3B01G019500 chr5A 38131523 38132340 817 False 272.333333 518 88.703667 4137 5235 3 chr5A.!!$F1 1098
12 TraesCS3B01G019500 chr4A 645579591 645580521 930 True 312.000000 361 88.691500 5841 6755 2 chr4A.!!$R2 914

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 835 0.031917 TACCCCCTCGCATCTTACCA 60.032 55.000 0.00 0.00 0.00 3.25 F
1502 1961 0.040204 AGCTATGCAAAGGCCCAAGT 59.960 50.000 0.00 0.00 40.13 3.16 F
1684 2145 0.249031 AGCAACCGCAAACTTTGAGC 60.249 50.000 5.65 1.48 42.27 4.26 F
2223 2702 0.894835 TGCTCAGTTATGTCAGCGGA 59.105 50.000 0.00 0.00 34.39 5.54 F
2935 3717 3.559655 GGGTTGAACAACTGAAAATTGCC 59.440 43.478 15.60 3.64 40.94 4.52 F
3911 4726 0.396139 CCACACCTGCAATGCCCTAT 60.396 55.000 1.53 0.00 0.00 2.57 F
4700 5650 0.825010 CCACTGCTGCCACCTTCTTT 60.825 55.000 0.00 0.00 0.00 2.52 F
4701 5651 1.545428 CCACTGCTGCCACCTTCTTTA 60.545 52.381 0.00 0.00 0.00 1.85 F
6295 7947 0.111061 TCATTTGCTGGCCTGTCTGT 59.889 50.000 11.69 0.00 0.00 3.41 F
6755 8445 0.109597 GCGTGAAGGCAAGTGGATTG 60.110 55.000 0.00 0.00 42.20 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2361 2840 0.180406 ACTAGGGTAATGGCAAGGCG 59.820 55.000 0.00 0.00 0.00 5.52 R
3001 3783 2.866156 GCAAGAAAAAGGCTTGGTGAAC 59.134 45.455 0.00 0.00 42.23 3.18 R
3671 4470 3.966218 GCTTTGTAACGTGTACAAGCAAG 59.034 43.478 21.79 17.32 38.47 4.01 R
3711 4510 0.461693 GTGCAGGCATCAGAGGAGAC 60.462 60.000 0.00 0.00 0.00 3.36 R
4668 5618 0.445436 GCAGTGGTCAGAATCAAGCG 59.555 55.000 0.00 0.00 0.00 4.68 R
4742 6278 2.079925 GCAGTCTAAAGAAGGTGGCAG 58.920 52.381 0.00 0.00 0.00 4.85 R
6186 7826 2.159000 CCCCTCGGTGGACAAACTATAC 60.159 54.545 0.00 0.00 38.35 1.47 R
6488 8174 4.551702 TGATAGACAGCAAGCCAAAGTA 57.448 40.909 0.00 0.00 0.00 2.24 R
7395 9124 0.109226 GCTACTGTCACCCTCACGTC 60.109 60.000 0.00 0.00 0.00 4.34 R
8698 13582 0.179111 TCACCGGCGAGCAGATAAAG 60.179 55.000 9.30 0.00 0.00 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 422 3.627577 AGACTAGCGGGCAAAATAACATG 59.372 43.478 0.00 0.00 0.00 3.21
43 434 7.802720 GGGCAAAATAACATGATTGTGTTTTTC 59.197 33.333 0.00 0.00 42.08 2.29
93 484 4.535526 AAATTTTTCATTAGGCCGCACT 57.464 36.364 0.00 0.00 0.00 4.40
94 485 4.535526 AATTTTTCATTAGGCCGCACTT 57.464 36.364 0.00 0.00 0.00 3.16
95 486 4.535526 ATTTTTCATTAGGCCGCACTTT 57.464 36.364 0.00 0.00 0.00 2.66
136 528 1.512694 GGCTTCCGGGCTGAAATTG 59.487 57.895 0.00 0.00 37.53 2.32
153 545 1.072266 TTGGTGCTGTTGGGTAGGAT 58.928 50.000 0.00 0.00 0.00 3.24
159 551 2.092968 TGCTGTTGGGTAGGATAAGCAG 60.093 50.000 0.00 0.00 34.46 4.24
160 552 2.565841 CTGTTGGGTAGGATAAGCAGC 58.434 52.381 0.00 0.00 0.00 5.25
161 553 1.912731 TGTTGGGTAGGATAAGCAGCA 59.087 47.619 0.00 0.00 0.00 4.41
165 557 1.003696 GGGTAGGATAAGCAGCATCCC 59.996 57.143 7.94 0.00 42.63 3.85
223 624 2.903404 AAAAACCGAACTTGGGCCA 58.097 47.368 0.00 0.00 0.00 5.36
225 626 2.296073 AAAACCGAACTTGGGCCATA 57.704 45.000 7.26 0.00 0.00 2.74
242 643 4.237724 GCCATAACTTTTGCTCAAACCTC 58.762 43.478 0.00 0.00 0.00 3.85
267 669 1.077005 TGCTTCCAGCCAAATTACCCT 59.923 47.619 0.00 0.00 41.51 4.34
412 823 5.023514 ACAAAATTCCTCAAATACCCCCT 57.976 39.130 0.00 0.00 0.00 4.79
421 832 3.042682 TCAAATACCCCCTCGCATCTTA 58.957 45.455 0.00 0.00 0.00 2.10
423 834 1.349067 ATACCCCCTCGCATCTTACC 58.651 55.000 0.00 0.00 0.00 2.85
424 835 0.031917 TACCCCCTCGCATCTTACCA 60.032 55.000 0.00 0.00 0.00 3.25
444 855 1.584724 TTTCTCTCTCCACCCCATCC 58.415 55.000 0.00 0.00 0.00 3.51
798 1209 1.697754 CCCCCTGCCTCCATACCTT 60.698 63.158 0.00 0.00 0.00 3.50
805 1216 1.968493 TGCCTCCATACCTTATCCGAC 59.032 52.381 0.00 0.00 0.00 4.79
817 1228 1.531423 TATCCGACATAGCGTCTCCC 58.469 55.000 0.00 0.00 42.98 4.30
832 1243 2.360600 CCCCCGTCATTTTCGGCA 60.361 61.111 0.00 0.00 45.71 5.69
917 1331 2.914908 GCCGTTGGTTTGCCGTGAT 61.915 57.895 0.00 0.00 37.67 3.06
938 1352 1.154205 CCGTGAGCTAATCCGGCTTG 61.154 60.000 0.00 0.00 40.40 4.01
939 1353 0.460284 CGTGAGCTAATCCGGCTTGT 60.460 55.000 0.00 0.00 40.40 3.16
940 1354 1.009829 GTGAGCTAATCCGGCTTGTG 58.990 55.000 0.00 0.00 40.40 3.33
1071 1485 2.266055 CCGGGACCTTGTCTCAGC 59.734 66.667 0.00 0.00 31.52 4.26
1072 1486 2.266055 CGGGACCTTGTCTCAGCC 59.734 66.667 0.00 0.00 31.52 4.85
1204 1619 6.258160 GTCCATTTGGTAGTTCAATCAATCG 58.742 40.000 0.00 0.00 36.34 3.34
1225 1640 3.683989 GCACATGGTCACGAAATGTATG 58.316 45.455 0.00 0.00 33.31 2.39
1250 1666 2.176546 CGTGAGCGGTGCATTTGG 59.823 61.111 0.00 0.00 0.00 3.28
1276 1692 7.360113 ACATTTGAGTTAATTTGGAACCACT 57.640 32.000 0.00 0.00 0.00 4.00
1293 1709 3.834813 ACCACTGAGTCCATATCGCATAT 59.165 43.478 0.00 0.00 0.00 1.78
1302 1718 8.699130 TGAGTCCATATCGCATATGATAGATTT 58.301 33.333 6.97 0.77 44.19 2.17
1310 1726 7.412137 TCGCATATGATAGATTTTGTCACAG 57.588 36.000 6.97 0.00 0.00 3.66
1448 1900 4.361451 AAGTTGCTCTCTTTGTTGTGTG 57.639 40.909 0.00 0.00 0.00 3.82
1458 1917 7.358683 GCTCTCTTTGTTGTGTGCATTTTTATC 60.359 37.037 0.00 0.00 0.00 1.75
1472 1931 5.891551 GCATTTTTATCCCCTTCTCCACTAA 59.108 40.000 0.00 0.00 0.00 2.24
1473 1932 6.379988 GCATTTTTATCCCCTTCTCCACTAAA 59.620 38.462 0.00 0.00 0.00 1.85
1494 1953 5.886960 AAAGACCACTTAGCTATGCAAAG 57.113 39.130 6.55 0.00 35.05 2.77
1502 1961 0.040204 AGCTATGCAAAGGCCCAAGT 59.960 50.000 0.00 0.00 40.13 3.16
1520 1979 2.991250 AGTTCTGTTGACTTGTGCTGT 58.009 42.857 0.00 0.00 0.00 4.40
1598 2057 9.634163 CCTATTTTAGTGTTTGATTAACCAACC 57.366 33.333 0.00 0.00 35.81 3.77
1680 2141 1.476488 AGTTCAGCAACCGCAAACTTT 59.524 42.857 0.00 0.00 41.13 2.66
1681 2142 1.587946 GTTCAGCAACCGCAAACTTTG 59.412 47.619 0.00 0.00 42.27 2.77
1682 2143 1.098869 TCAGCAACCGCAAACTTTGA 58.901 45.000 5.65 0.00 42.27 2.69
1683 2144 1.065401 TCAGCAACCGCAAACTTTGAG 59.935 47.619 5.65 1.96 42.27 3.02
1684 2145 0.249031 AGCAACCGCAAACTTTGAGC 60.249 50.000 5.65 1.48 42.27 4.26
1692 2153 2.293399 CGCAAACTTTGAGCCCTTAAGT 59.707 45.455 5.65 0.00 33.76 2.24
1702 2163 8.360390 ACTTTGAGCCCTTAAGTTTCATTTTAG 58.640 33.333 0.97 1.92 0.00 1.85
1728 2189 5.779241 AACTGATTAGGATGTTTCAGGGA 57.221 39.130 4.06 0.00 39.89 4.20
1741 2216 6.783708 TGTTTCAGGGAAATTACACACTTT 57.216 33.333 0.00 0.00 33.97 2.66
1742 2217 6.801575 TGTTTCAGGGAAATTACACACTTTC 58.198 36.000 0.00 0.00 33.97 2.62
1847 2326 4.272504 ACAAGATGTTCACACTGTTTACCG 59.727 41.667 0.00 0.00 0.00 4.02
1887 2366 7.424803 CAGAGTTGATACATGTTGGACAAAAA 58.575 34.615 2.30 0.00 0.00 1.94
2115 2594 1.817357 TGCAGCTGTCCAATGAGAAG 58.183 50.000 16.64 0.00 0.00 2.85
2223 2702 0.894835 TGCTCAGTTATGTCAGCGGA 59.105 50.000 0.00 0.00 34.39 5.54
2322 2801 6.416455 CAGTGCTCGAGATACTGAGAAATAAC 59.584 42.308 30.74 6.53 43.35 1.89
2440 3178 4.337555 CCTTTTGCATGGACTTCCTATGAG 59.662 45.833 10.25 1.98 36.82 2.90
2441 3179 3.565764 TTGCATGGACTTCCTATGAGG 57.434 47.619 10.25 0.00 36.46 3.86
2457 3198 7.210174 TCCTATGAGGTGAACTATTTGATTCG 58.790 38.462 0.00 0.00 36.53 3.34
2474 3215 4.994217 TGATTCGTTCTGCACATACTTGAA 59.006 37.500 0.00 0.00 0.00 2.69
2537 3278 7.660208 TGAAAAGAAACCTGTAGTATGGACTTC 59.340 37.037 0.00 0.00 37.10 3.01
2935 3717 3.559655 GGGTTGAACAACTGAAAATTGCC 59.440 43.478 15.60 3.64 40.94 4.52
2948 3730 4.405358 TGAAAATTGCCACAGAACTTTCCT 59.595 37.500 0.00 0.00 0.00 3.36
2959 3741 4.082125 CAGAACTTTCCTTATGGCAGGTT 58.918 43.478 0.00 0.00 35.15 3.50
3521 4306 4.985538 TCTTTCTGAGTTGGTATGCCTTT 58.014 39.130 0.16 0.00 35.27 3.11
3533 4318 4.837860 TGGTATGCCTTTGATCCTTTTTGT 59.162 37.500 0.16 0.00 35.27 2.83
3547 4334 8.825745 TGATCCTTTTTGTTTGCTGTTATTTTC 58.174 29.630 0.00 0.00 0.00 2.29
3604 4391 8.324306 TCTTTTATCACATGGATTCAGTCTTCT 58.676 33.333 0.00 0.00 37.44 2.85
3611 4398 9.300681 TCACATGGATTCAGTCTTCTAAATTTT 57.699 29.630 0.00 0.00 0.00 1.82
3671 4470 3.885484 ACACAATCTGCTATTATGCGC 57.115 42.857 0.00 0.00 35.36 6.09
3708 4507 7.712639 ACGTTACAAAGCATTCAGATATGAGAT 59.287 33.333 0.00 0.00 0.00 2.75
3779 4585 2.550830 TTCTGCCTTCCAGTCAGAAC 57.449 50.000 0.00 0.00 40.63 3.01
3803 4609 2.889678 TGCATAACCACATTGTGAGCAA 59.110 40.909 18.33 1.43 35.23 3.91
3874 4681 4.978083 ACATGGCATGAGAGTCATTTTC 57.022 40.909 32.74 0.00 34.28 2.29
3911 4726 0.396139 CCACACCTGCAATGCCCTAT 60.396 55.000 1.53 0.00 0.00 2.57
3928 4743 4.390297 GCCCTATTATCTGTTCAATCGCTC 59.610 45.833 0.00 0.00 0.00 5.03
3977 4796 2.094700 TGAAGATTCGCAAGTCTACGCT 60.095 45.455 0.00 0.00 39.48 5.07
3978 4797 2.656560 AGATTCGCAAGTCTACGCTT 57.343 45.000 0.00 0.00 39.48 4.68
3989 4808 5.575606 GCAAGTCTACGCTTAACAGAACATA 59.424 40.000 0.00 0.00 0.00 2.29
4084 4995 4.474394 ACTAGCTGGCAGTCTACATCATA 58.526 43.478 17.16 0.00 0.00 2.15
4241 5180 4.551702 TCTAGCATCAAAAGTACAGCCA 57.448 40.909 0.00 0.00 0.00 4.75
4398 5337 8.024285 GCTATGACCCACTAGCGATAATATATC 58.976 40.741 0.00 0.00 31.83 1.63
4700 5650 0.825010 CCACTGCTGCCACCTTCTTT 60.825 55.000 0.00 0.00 0.00 2.52
4701 5651 1.545428 CCACTGCTGCCACCTTCTTTA 60.545 52.381 0.00 0.00 0.00 1.85
4703 5653 1.699634 ACTGCTGCCACCTTCTTTAGA 59.300 47.619 0.00 0.00 0.00 2.10
4704 5654 2.079925 CTGCTGCCACCTTCTTTAGAC 58.920 52.381 0.00 0.00 0.00 2.59
4706 5656 2.079925 GCTGCCACCTTCTTTAGACTG 58.920 52.381 0.00 0.00 0.00 3.51
4707 5657 2.079925 CTGCCACCTTCTTTAGACTGC 58.920 52.381 0.00 0.00 0.00 4.40
4710 5660 2.704572 CCACCTTCTTTAGACTGCCAG 58.295 52.381 0.00 0.00 0.00 4.85
4711 5661 2.079925 CACCTTCTTTAGACTGCCAGC 58.920 52.381 0.00 0.00 0.00 4.85
4712 5662 1.981495 ACCTTCTTTAGACTGCCAGCT 59.019 47.619 0.00 0.00 0.00 4.24
4713 5663 3.055819 CACCTTCTTTAGACTGCCAGCTA 60.056 47.826 0.00 0.00 0.00 3.32
4715 5665 4.962995 ACCTTCTTTAGACTGCCAGCTATA 59.037 41.667 0.00 0.00 0.00 1.31
4716 5666 5.604650 ACCTTCTTTAGACTGCCAGCTATAT 59.395 40.000 0.00 0.00 0.00 0.86
4717 5667 6.100424 ACCTTCTTTAGACTGCCAGCTATATT 59.900 38.462 0.00 0.00 0.00 1.28
4718 5668 6.426328 CCTTCTTTAGACTGCCAGCTATATTG 59.574 42.308 0.00 0.00 0.00 1.90
4719 5669 6.485830 TCTTTAGACTGCCAGCTATATTGT 57.514 37.500 0.00 0.00 0.00 2.71
4720 5670 6.889198 TCTTTAGACTGCCAGCTATATTGTT 58.111 36.000 0.00 0.00 0.00 2.83
4721 5671 8.018537 TCTTTAGACTGCCAGCTATATTGTTA 57.981 34.615 0.00 0.00 0.00 2.41
4724 6259 5.799213 AGACTGCCAGCTATATTGTTATCC 58.201 41.667 0.00 0.00 0.00 2.59
4729 6264 4.566488 GCCAGCTATATTGTTATCCCAGCT 60.566 45.833 0.00 0.00 38.37 4.24
4733 6268 6.148480 CAGCTATATTGTTATCCCAGCTGTTC 59.852 42.308 13.81 0.00 45.88 3.18
4739 6275 7.716799 ATTGTTATCCCAGCTGTTCATTTTA 57.283 32.000 13.81 0.00 0.00 1.52
4740 6276 6.757897 TGTTATCCCAGCTGTTCATTTTAG 57.242 37.500 13.81 0.00 0.00 1.85
4742 6278 6.374333 TGTTATCCCAGCTGTTCATTTTAGAC 59.626 38.462 13.81 0.00 0.00 2.59
4744 6280 4.326826 TCCCAGCTGTTCATTTTAGACTG 58.673 43.478 13.81 0.00 0.00 3.51
4748 6284 3.503748 AGCTGTTCATTTTAGACTGCCAC 59.496 43.478 0.00 0.00 0.00 5.01
4752 6288 4.518970 TGTTCATTTTAGACTGCCACCTTC 59.481 41.667 0.00 0.00 0.00 3.46
4754 6290 4.985538 TCATTTTAGACTGCCACCTTCTT 58.014 39.130 0.00 0.00 0.00 2.52
4756 6292 6.539173 TCATTTTAGACTGCCACCTTCTTTA 58.461 36.000 0.00 0.00 0.00 1.85
4757 6293 6.655003 TCATTTTAGACTGCCACCTTCTTTAG 59.345 38.462 0.00 0.00 0.00 1.85
4760 6296 3.243724 AGACTGCCACCTTCTTTAGACT 58.756 45.455 0.00 0.00 0.00 3.24
5098 6658 6.245408 TGGAGTCTTTGTTTATGGCTTATGT 58.755 36.000 0.00 0.00 0.00 2.29
5367 6927 9.686683 ATAATTTTACAGCTCCATTCTAACTGT 57.313 29.630 0.00 0.00 43.60 3.55
5579 7145 3.401033 TGATGACAGGTGGTGTAGTTG 57.599 47.619 0.00 0.00 40.56 3.16
5585 7151 2.504175 ACAGGTGGTGTAGTTGAAGTGT 59.496 45.455 0.00 0.00 37.75 3.55
5646 7240 7.459394 TCACTTATAGTTTGTAACGCATAGC 57.541 36.000 0.00 0.00 36.23 2.97
5685 7279 4.897140 TGTAGTTTAGGTGTATGGCGTTT 58.103 39.130 0.00 0.00 0.00 3.60
5946 7540 9.016623 GTCTTCACTGTTATTTTGTTGTTTACC 57.983 33.333 0.00 0.00 0.00 2.85
6129 7737 2.472695 TCAGCAGTGCTTATTCCGTT 57.527 45.000 16.89 0.00 36.40 4.44
6134 7742 4.391830 CAGCAGTGCTTATTCCGTTCTTTA 59.608 41.667 16.89 0.00 36.40 1.85
6135 7743 5.001232 AGCAGTGCTTATTCCGTTCTTTAA 58.999 37.500 13.14 0.00 33.89 1.52
6136 7744 5.086727 GCAGTGCTTATTCCGTTCTTTAAC 58.913 41.667 8.18 0.00 0.00 2.01
6142 7750 6.370718 TGCTTATTCCGTTCTTTAACCTCTTC 59.629 38.462 0.00 0.00 31.46 2.87
6143 7751 6.370718 GCTTATTCCGTTCTTTAACCTCTTCA 59.629 38.462 0.00 0.00 31.46 3.02
6186 7826 6.989169 AGTCAGCATTCCAAGCTTATAAGTAG 59.011 38.462 13.91 4.52 41.14 2.57
6207 7855 0.909623 ATAGTTTGTCCACCGAGGGG 59.090 55.000 0.00 0.00 38.24 4.79
6253 7905 8.336801 GTGATTACACTTTCTACCCTGAATTT 57.663 34.615 0.00 0.00 42.99 1.82
6254 7906 8.237267 GTGATTACACTTTCTACCCTGAATTTG 58.763 37.037 0.00 0.00 42.99 2.32
6295 7947 0.111061 TCATTTGCTGGCCTGTCTGT 59.889 50.000 11.69 0.00 0.00 3.41
6307 7959 3.370953 GGCCTGTCTGTTGATGAGGTTAT 60.371 47.826 0.00 0.00 31.15 1.89
6308 7960 4.265073 GCCTGTCTGTTGATGAGGTTATT 58.735 43.478 0.00 0.00 31.15 1.40
6311 7981 6.118170 CCTGTCTGTTGATGAGGTTATTCAT 58.882 40.000 0.00 0.00 40.40 2.57
6315 7985 8.485392 TGTCTGTTGATGAGGTTATTCATATGA 58.515 33.333 0.00 0.00 37.90 2.15
6478 8164 6.394025 GAAGACGACCTTCCATCTAGTTAT 57.606 41.667 9.93 0.00 44.27 1.89
6488 8174 8.560903 ACCTTCCATCTAGTTATTCTTTCCAAT 58.439 33.333 0.00 0.00 0.00 3.16
6513 8200 4.760530 TTGGCTTGCTGTCTATCATACT 57.239 40.909 0.00 0.00 0.00 2.12
6721 8409 1.078848 CCAAAGGGAGCGTGAGGAG 60.079 63.158 0.00 0.00 35.59 3.69
6755 8445 0.109597 GCGTGAAGGCAAGTGGATTG 60.110 55.000 0.00 0.00 42.20 2.67
6836 8535 0.181350 ATCATCCGGAACTGGAAGCC 59.819 55.000 9.01 0.00 42.46 4.35
6849 8548 3.507622 ACTGGAAGCCTGCAACTTAATTC 59.492 43.478 1.80 0.00 37.60 2.17
6855 8554 6.410942 AAGCCTGCAACTTAATTCTTCTTT 57.589 33.333 0.00 0.00 0.00 2.52
6866 8565 9.967346 AACTTAATTCTTCTTTTTGCTAACCTC 57.033 29.630 0.00 0.00 0.00 3.85
7070 8773 5.708948 TGCTTTGTTACTATTCCATGTTGC 58.291 37.500 0.00 0.00 0.00 4.17
7071 8774 5.102313 GCTTTGTTACTATTCCATGTTGCC 58.898 41.667 0.00 0.00 0.00 4.52
7079 8808 5.457686 ACTATTCCATGTTGCCCATTGTAT 58.542 37.500 0.00 0.00 0.00 2.29
7097 8826 7.255486 CCATTGTATCTGATCAATCATTGCTGT 60.255 37.037 0.00 0.00 36.02 4.40
7395 9124 2.893637 CAAGTATGTCCCGAAGTGGAG 58.106 52.381 0.00 0.00 42.00 3.86
7408 9137 1.179814 AGTGGAGACGTGAGGGTGAC 61.180 60.000 0.00 0.00 0.00 3.67
7427 9156 2.055042 AGTAGCAGTCAGAGGCCGG 61.055 63.158 0.00 0.00 0.00 6.13
7431 9160 3.699894 CAGTCAGAGGCCGGCTGT 61.700 66.667 28.56 14.72 34.98 4.40
7448 9177 1.227943 GTGGCAGCTGAACCAGACA 60.228 57.895 20.43 0.00 36.38 3.41
7480 9209 3.532155 GATCGTCCTCGCCCTGCT 61.532 66.667 0.00 0.00 36.96 4.24
7760 9489 1.294459 CTGTGCTCTGCCTGCTGTA 59.706 57.895 0.00 0.00 0.00 2.74
7778 9507 3.680490 TGTATGAGATTTTTGCCGTCCA 58.320 40.909 0.00 0.00 0.00 4.02
7779 9508 4.269183 TGTATGAGATTTTTGCCGTCCAT 58.731 39.130 0.00 0.00 0.00 3.41
7814 9543 1.203994 AGCTTCATGCACAATGGAAGC 59.796 47.619 21.51 21.51 45.94 3.86
7881 9610 3.241646 GCGCACCTAAATTTTCGAATTGC 60.242 43.478 0.30 0.00 0.00 3.56
7885 9614 5.405269 GCACCTAAATTTTCGAATTGCAACT 59.595 36.000 0.00 0.00 0.00 3.16
7927 9656 5.155509 TGTTTGATGTTTTGAGAGTCACG 57.844 39.130 0.00 0.00 0.00 4.35
7934 9663 3.382227 TGTTTTGAGAGTCACGGTACTCA 59.618 43.478 18.18 8.51 46.89 3.41
7964 9693 2.486203 TGTGTTGCTCTTTGTTGTCGTT 59.514 40.909 0.00 0.00 0.00 3.85
7987 9716 3.057969 TGTTCCAGACTATGCTGTTGG 57.942 47.619 0.00 0.00 34.06 3.77
7990 9719 3.334583 TCCAGACTATGCTGTTGGTTC 57.665 47.619 0.00 0.00 34.06 3.62
8033 9762 4.098416 GCTACCGCTGAATTTTTGTGATC 58.902 43.478 0.00 0.00 0.00 2.92
8061 9790 7.972277 TCAGATATATTAATTTCGTAGACGCCC 59.028 37.037 0.00 0.00 39.60 6.13
8064 9793 0.528249 TAATTTCGTAGACGCCCGCC 60.528 55.000 0.00 0.00 39.60 6.13
8069 9798 4.530857 GTAGACGCCCGCCTGCAT 62.531 66.667 0.00 0.00 0.00 3.96
8070 9799 4.529219 TAGACGCCCGCCTGCATG 62.529 66.667 0.00 0.00 0.00 4.06
8095 9824 8.673711 TGTGGCACATAAAGATAAAAGTACATC 58.326 33.333 17.96 0.00 44.52 3.06
8165 9896 8.925161 AACGTTAGTACAAAGTTGTAAGTACA 57.075 30.769 0.00 0.00 44.46 2.90
8179 13063 8.215736 AGTTGTAAGTACACTTATTTTGGGACT 58.784 33.333 5.19 0.00 40.20 3.85
8183 13067 5.246307 AGTACACTTATTTTGGGACTGAGC 58.754 41.667 0.00 0.00 0.00 4.26
8203 13087 5.790618 TGAGCAAGTATATAATAAGCCCCCT 59.209 40.000 4.52 0.00 0.00 4.79
8216 13100 2.319844 AGCCCCCTTTTCTTTTGTGAG 58.680 47.619 0.00 0.00 0.00 3.51
8234 13118 6.202516 TGTGAGAAAACTGGTTTAGGTTTG 57.797 37.500 0.00 0.00 46.12 2.93
8236 13120 6.033966 GTGAGAAAACTGGTTTAGGTTTGTG 58.966 40.000 0.00 0.00 46.12 3.33
8237 13121 5.006153 AGAAAACTGGTTTAGGTTTGTGC 57.994 39.130 0.00 0.00 46.12 4.57
8238 13122 3.812156 AAACTGGTTTAGGTTTGTGCC 57.188 42.857 0.00 0.00 30.15 5.01
8239 13123 2.445682 ACTGGTTTAGGTTTGTGCCA 57.554 45.000 0.00 0.00 0.00 4.92
8240 13124 2.741145 ACTGGTTTAGGTTTGTGCCAA 58.259 42.857 0.00 0.00 0.00 4.52
8241 13125 3.100671 ACTGGTTTAGGTTTGTGCCAAA 58.899 40.909 0.00 0.00 0.00 3.28
8244 13128 5.104259 TGGTTTAGGTTTGTGCCAAAAAT 57.896 34.783 2.47 0.00 0.00 1.82
8248 13132 7.775561 TGGTTTAGGTTTGTGCCAAAAATAAAT 59.224 29.630 14.46 1.23 0.00 1.40
8296 13180 3.612607 ACCCCGACTTCCCTCCCT 61.613 66.667 0.00 0.00 0.00 4.20
8323 13207 3.541632 GGGAATATTCGACTTCCTGCAA 58.458 45.455 16.17 0.00 40.67 4.08
8330 13214 1.416401 TCGACTTCCTGCAAACCTTCT 59.584 47.619 0.00 0.00 0.00 2.85
8331 13215 2.158813 TCGACTTCCTGCAAACCTTCTT 60.159 45.455 0.00 0.00 0.00 2.52
8332 13216 2.224314 CGACTTCCTGCAAACCTTCTTC 59.776 50.000 0.00 0.00 0.00 2.87
8334 13218 3.631250 ACTTCCTGCAAACCTTCTTCAA 58.369 40.909 0.00 0.00 0.00 2.69
8335 13219 4.023291 ACTTCCTGCAAACCTTCTTCAAA 58.977 39.130 0.00 0.00 0.00 2.69
8336 13220 4.098501 ACTTCCTGCAAACCTTCTTCAAAG 59.901 41.667 0.00 0.00 0.00 2.77
8381 13265 9.905713 AGGAGAACTGTTATTATGCATTAAGAA 57.094 29.630 3.54 0.00 0.00 2.52
8506 13390 1.501169 GTGCAAATTTCACACTGGCC 58.499 50.000 11.81 0.00 34.73 5.36
8514 13398 1.549243 TTCACACTGGCCCGATGCTA 61.549 55.000 0.00 0.00 40.92 3.49
8535 13419 2.279918 ACGTCCCGCAACTGTGTC 60.280 61.111 0.00 0.00 0.00 3.67
8545 13429 0.041047 CAACTGTGTCGTGCCACATG 60.041 55.000 0.00 0.00 43.91 3.21
8546 13430 0.179059 AACTGTGTCGTGCCACATGA 60.179 50.000 0.00 0.00 43.91 3.07
8547 13431 0.035317 ACTGTGTCGTGCCACATGAT 59.965 50.000 0.00 0.00 43.91 2.45
8548 13432 0.445043 CTGTGTCGTGCCACATGATG 59.555 55.000 0.00 0.00 43.91 3.07
8549 13433 1.135315 GTGTCGTGCCACATGATGC 59.865 57.895 0.00 1.47 35.38 3.91
8550 13434 2.039974 TGTCGTGCCACATGATGCC 61.040 57.895 0.00 0.00 31.77 4.40
8551 13435 1.746615 GTCGTGCCACATGATGCCT 60.747 57.895 0.00 0.00 31.77 4.75
8552 13436 1.450134 TCGTGCCACATGATGCCTC 60.450 57.895 0.00 0.00 0.00 4.70
8553 13437 2.816360 CGTGCCACATGATGCCTCG 61.816 63.158 0.00 5.73 0.00 4.63
8554 13438 1.746615 GTGCCACATGATGCCTCGT 60.747 57.895 0.00 0.00 0.00 4.18
8555 13439 1.450134 TGCCACATGATGCCTCGTC 60.450 57.895 0.00 0.00 0.00 4.20
8556 13440 2.528743 GCCACATGATGCCTCGTCG 61.529 63.158 0.00 0.00 0.00 5.12
8557 13441 2.528743 CCACATGATGCCTCGTCGC 61.529 63.158 0.00 0.00 0.00 5.19
8558 13442 2.202932 ACATGATGCCTCGTCGCC 60.203 61.111 0.00 0.00 0.00 5.54
8559 13443 2.202919 CATGATGCCTCGTCGCCA 60.203 61.111 0.00 0.00 0.00 5.69
8560 13444 2.202932 ATGATGCCTCGTCGCCAC 60.203 61.111 0.00 0.00 0.00 5.01
8561 13445 3.740128 ATGATGCCTCGTCGCCACC 62.740 63.158 0.00 0.00 0.00 4.61
8588 13472 2.590007 GCGCCCATTGCTCTCGAT 60.590 61.111 0.00 0.00 38.05 3.59
8589 13473 2.890109 GCGCCCATTGCTCTCGATG 61.890 63.158 0.00 0.00 38.05 3.84
8590 13474 2.890109 CGCCCATTGCTCTCGATGC 61.890 63.158 3.91 3.91 38.05 3.91
8591 13475 2.550101 GCCCATTGCTCTCGATGCC 61.550 63.158 7.87 0.00 36.87 4.40
8592 13476 1.153107 CCCATTGCTCTCGATGCCA 60.153 57.895 7.87 0.00 33.59 4.92
8593 13477 1.164662 CCCATTGCTCTCGATGCCAG 61.165 60.000 7.87 0.00 33.59 4.85
8594 13478 1.647629 CATTGCTCTCGATGCCAGC 59.352 57.895 7.87 3.98 0.00 4.85
8595 13479 1.886313 ATTGCTCTCGATGCCAGCG 60.886 57.895 0.00 0.00 35.81 5.18
8597 13481 4.887987 GCTCTCGATGCCAGCGCT 62.888 66.667 2.64 2.64 35.36 5.92
8598 13482 2.657944 CTCTCGATGCCAGCGCTC 60.658 66.667 7.13 0.00 35.36 5.03
8599 13483 4.559229 TCTCGATGCCAGCGCTCG 62.559 66.667 7.13 8.59 37.14 5.03
8617 13501 4.738998 CCGCACCTTGCCCCATCA 62.739 66.667 0.00 0.00 41.12 3.07
8618 13502 3.136123 CGCACCTTGCCCCATCAG 61.136 66.667 0.00 0.00 41.12 2.90
8619 13503 3.455469 GCACCTTGCCCCATCAGC 61.455 66.667 0.00 0.00 37.42 4.26
8620 13504 3.136123 CACCTTGCCCCATCAGCG 61.136 66.667 0.00 0.00 0.00 5.18
8621 13505 4.431131 ACCTTGCCCCATCAGCGG 62.431 66.667 0.00 0.00 0.00 5.52
8627 13511 2.510411 CCCCATCAGCGGCATGTA 59.490 61.111 1.45 0.00 0.00 2.29
8628 13512 1.598962 CCCCATCAGCGGCATGTAG 60.599 63.158 1.45 0.00 0.00 2.74
8629 13513 2.256591 CCCATCAGCGGCATGTAGC 61.257 63.158 1.45 6.45 44.65 3.58
8638 13522 2.190578 GCATGTAGCCCCGCTCTT 59.809 61.111 0.00 0.00 40.44 2.85
8639 13523 1.889573 GCATGTAGCCCCGCTCTTC 60.890 63.158 0.00 0.00 40.44 2.87
8640 13524 1.592669 CATGTAGCCCCGCTCTTCG 60.593 63.158 0.00 0.00 40.44 3.79
8641 13525 3.447025 ATGTAGCCCCGCTCTTCGC 62.447 63.158 0.00 0.00 40.44 4.70
8658 13542 3.309675 CGTATCTTCGCCGCCTTG 58.690 61.111 0.00 0.00 0.00 3.61
8659 13543 1.226859 CGTATCTTCGCCGCCTTGA 60.227 57.895 0.00 0.00 0.00 3.02
8660 13544 1.480219 CGTATCTTCGCCGCCTTGAC 61.480 60.000 0.00 0.00 0.00 3.18
8661 13545 1.143183 TATCTTCGCCGCCTTGACC 59.857 57.895 0.00 0.00 0.00 4.02
8662 13546 2.622903 TATCTTCGCCGCCTTGACCG 62.623 60.000 0.00 0.00 0.00 4.79
8664 13548 3.636313 CTTCGCCGCCTTGACCGTA 62.636 63.158 0.00 0.00 0.00 4.02
8665 13549 3.636313 TTCGCCGCCTTGACCGTAG 62.636 63.158 0.00 0.00 0.00 3.51
8666 13550 4.430765 CGCCGCCTTGACCGTAGT 62.431 66.667 0.00 0.00 0.00 2.73
8667 13551 2.508663 GCCGCCTTGACCGTAGTC 60.509 66.667 0.00 0.00 43.83 2.59
8675 13559 4.515404 GACCGTAGTCATGCCACC 57.485 61.111 0.00 0.00 42.99 4.61
8676 13560 1.594833 GACCGTAGTCATGCCACCA 59.405 57.895 0.00 0.00 42.99 4.17
8677 13561 0.739813 GACCGTAGTCATGCCACCAC 60.740 60.000 0.00 0.00 42.99 4.16
8678 13562 1.295101 CCGTAGTCATGCCACCACA 59.705 57.895 0.00 0.00 0.00 4.17
8679 13563 1.019278 CCGTAGTCATGCCACCACAC 61.019 60.000 0.00 0.00 0.00 3.82
8680 13564 1.019278 CGTAGTCATGCCACCACACC 61.019 60.000 0.00 0.00 0.00 4.16
8681 13565 1.019278 GTAGTCATGCCACCACACCG 61.019 60.000 0.00 0.00 0.00 4.94
8682 13566 1.476845 TAGTCATGCCACCACACCGT 61.477 55.000 0.00 0.00 0.00 4.83
8683 13567 2.031919 TCATGCCACCACACCGTC 59.968 61.111 0.00 0.00 0.00 4.79
8684 13568 2.032528 CATGCCACCACACCGTCT 59.967 61.111 0.00 0.00 0.00 4.18
8685 13569 2.034879 CATGCCACCACACCGTCTC 61.035 63.158 0.00 0.00 0.00 3.36
8686 13570 3.589654 ATGCCACCACACCGTCTCG 62.590 63.158 0.00 0.00 0.00 4.04
8691 13575 4.742201 CCACACCGTCTCGCCCTG 62.742 72.222 0.00 0.00 0.00 4.45
8703 13587 4.344237 GCCCTGCTGTGGCTTTAT 57.656 55.556 13.43 0.00 45.70 1.40
8704 13588 2.110296 GCCCTGCTGTGGCTTTATC 58.890 57.895 13.43 0.00 45.70 1.75
8705 13589 0.394899 GCCCTGCTGTGGCTTTATCT 60.395 55.000 13.43 0.00 45.70 1.98
8706 13590 1.386533 CCCTGCTGTGGCTTTATCTG 58.613 55.000 0.00 0.00 39.59 2.90
8707 13591 0.737219 CCTGCTGTGGCTTTATCTGC 59.263 55.000 0.00 0.00 39.59 4.26
8708 13592 1.681166 CCTGCTGTGGCTTTATCTGCT 60.681 52.381 0.00 0.00 39.59 4.24
8709 13593 1.669779 CTGCTGTGGCTTTATCTGCTC 59.330 52.381 0.00 0.00 39.59 4.26
8710 13594 0.654683 GCTGTGGCTTTATCTGCTCG 59.345 55.000 0.00 0.00 35.22 5.03
8711 13595 0.654683 CTGTGGCTTTATCTGCTCGC 59.345 55.000 0.00 0.00 0.00 5.03
8712 13596 0.744414 TGTGGCTTTATCTGCTCGCC 60.744 55.000 0.00 0.00 41.06 5.54
8713 13597 1.521457 TGGCTTTATCTGCTCGCCG 60.521 57.895 0.00 0.00 43.54 6.46
8714 13598 2.247437 GGCTTTATCTGCTCGCCGG 61.247 63.158 0.00 0.00 0.00 6.13
8715 13599 1.521681 GCTTTATCTGCTCGCCGGT 60.522 57.895 1.90 0.00 0.00 5.28
8716 13600 1.766143 GCTTTATCTGCTCGCCGGTG 61.766 60.000 9.28 9.28 0.00 4.94
8717 13601 0.179111 CTTTATCTGCTCGCCGGTGA 60.179 55.000 18.43 18.43 0.00 4.02
8718 13602 0.459585 TTTATCTGCTCGCCGGTGAC 60.460 55.000 15.21 11.84 0.00 3.67
8719 13603 1.600511 TTATCTGCTCGCCGGTGACA 61.601 55.000 15.21 15.76 0.00 3.58
8720 13604 2.004808 TATCTGCTCGCCGGTGACAG 62.005 60.000 27.60 27.60 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 457 6.254589 TGCGGCCTAATGAAAAATTTAAATCG 59.745 34.615 0.00 0.00 0.00 3.34
75 466 4.329462 AAAAGTGCGGCCTAATGAAAAA 57.671 36.364 0.00 0.00 0.00 1.94
76 467 4.329462 AAAAAGTGCGGCCTAATGAAAA 57.671 36.364 0.00 0.00 0.00 2.29
136 528 2.919228 CTTATCCTACCCAACAGCACC 58.081 52.381 0.00 0.00 0.00 5.01
153 545 1.699634 GGGTCTATGGGATGCTGCTTA 59.300 52.381 0.00 0.00 0.00 3.09
159 551 1.347707 TCGAATGGGTCTATGGGATGC 59.652 52.381 0.00 0.00 0.00 3.91
160 552 3.181455 TGTTCGAATGGGTCTATGGGATG 60.181 47.826 0.00 0.00 0.00 3.51
161 553 3.045634 TGTTCGAATGGGTCTATGGGAT 58.954 45.455 0.00 0.00 0.00 3.85
165 557 3.065371 GCCTTTGTTCGAATGGGTCTATG 59.935 47.826 0.00 0.00 0.00 2.23
223 624 3.832490 GGGGAGGTTTGAGCAAAAGTTAT 59.168 43.478 0.00 0.00 31.33 1.89
225 626 2.039418 GGGGAGGTTTGAGCAAAAGTT 58.961 47.619 0.00 0.00 31.33 2.66
371 782 4.520846 GATGCCACGGCTTTCGCG 62.521 66.667 9.92 0.00 43.89 5.87
372 783 2.976840 TTGATGCCACGGCTTTCGC 61.977 57.895 9.92 0.00 43.89 4.70
376 787 0.749649 TTTTGTTGATGCCACGGCTT 59.250 45.000 9.92 2.39 42.51 4.35
412 823 4.202161 GGAGAGAGAAATGGTAAGATGCGA 60.202 45.833 0.00 0.00 0.00 5.10
421 832 1.290134 GGGGTGGAGAGAGAAATGGT 58.710 55.000 0.00 0.00 0.00 3.55
423 834 2.158696 GGATGGGGTGGAGAGAGAAATG 60.159 54.545 0.00 0.00 0.00 2.32
424 835 2.131023 GGATGGGGTGGAGAGAGAAAT 58.869 52.381 0.00 0.00 0.00 2.17
805 1216 1.464376 ATGACGGGGGAGACGCTATG 61.464 60.000 0.00 0.00 44.03 2.23
892 1306 1.476235 GCAAACCAACGGCGAAACAC 61.476 55.000 16.62 0.00 0.00 3.32
938 1352 0.528249 CCAGCCACAAACAACAGCAC 60.528 55.000 0.00 0.00 0.00 4.40
939 1353 1.674764 CCCAGCCACAAACAACAGCA 61.675 55.000 0.00 0.00 0.00 4.41
940 1354 1.067916 CCCAGCCACAAACAACAGC 59.932 57.895 0.00 0.00 0.00 4.40
1020 1434 1.131037 CTCTCTTGAGCGCGTTCTCG 61.131 60.000 23.51 14.00 35.90 4.04
1071 1485 0.310854 GGATAAAATTGAGCGGCGGG 59.689 55.000 9.78 0.00 0.00 6.13
1072 1486 0.041312 CGGATAAAATTGAGCGGCGG 60.041 55.000 9.78 0.00 0.00 6.13
1204 1619 3.373748 TCATACATTTCGTGACCATGTGC 59.626 43.478 0.00 0.00 33.19 4.57
1250 1666 7.926018 AGTGGTTCCAAATTAACTCAAATGTTC 59.074 33.333 0.00 0.00 0.00 3.18
1276 1692 7.830099 ATCTATCATATGCGATATGGACTCA 57.170 36.000 12.99 0.00 42.23 3.41
1293 1709 6.212589 TCCAGTACCTGTGACAAAATCTATCA 59.787 38.462 0.00 0.00 0.00 2.15
1302 1718 4.431416 ACAAATCCAGTACCTGTGACAA 57.569 40.909 0.00 0.00 0.00 3.18
1310 1726 5.852282 ATGGCAAATACAAATCCAGTACC 57.148 39.130 0.00 0.00 0.00 3.34
1322 1738 2.355197 GCCCAACCAAATGGCAAATAC 58.645 47.619 0.00 0.00 44.70 1.89
1330 1746 0.609662 CCAGAAGGCCCAACCAAATG 59.390 55.000 0.00 0.00 43.14 2.32
1351 1767 2.887152 GCCCAACCAGCCTATGAAATAG 59.113 50.000 0.00 0.00 46.56 1.73
1448 1900 4.281657 AGTGGAGAAGGGGATAAAAATGC 58.718 43.478 0.00 0.00 0.00 3.56
1458 1917 2.642807 TGGTCTTTTAGTGGAGAAGGGG 59.357 50.000 0.00 0.00 0.00 4.79
1472 1931 4.702131 CCTTTGCATAGCTAAGTGGTCTTT 59.298 41.667 0.00 0.00 39.11 2.52
1473 1932 4.265073 CCTTTGCATAGCTAAGTGGTCTT 58.735 43.478 0.00 0.00 39.11 3.01
1494 1953 1.338020 CAAGTCAACAGAACTTGGGCC 59.662 52.381 0.00 0.00 46.32 5.80
1502 1961 2.710377 ACACAGCACAAGTCAACAGAA 58.290 42.857 0.00 0.00 0.00 3.02
1520 1979 7.282332 TCATAATCAACCACAATGTCAAACA 57.718 32.000 0.00 0.00 0.00 2.83
1625 2085 8.504812 TGTGCTTTATTCTATAATCTGTTGCA 57.495 30.769 0.00 0.00 0.00 4.08
1639 2100 4.084013 ACTGTGCTACGTTGTGCTTTATTC 60.084 41.667 0.00 0.00 0.00 1.75
1680 2141 6.010219 AGCTAAAATGAAACTTAAGGGCTCA 58.990 36.000 7.53 6.65 0.00 4.26
1681 2142 6.516739 AGCTAAAATGAAACTTAAGGGCTC 57.483 37.500 7.53 0.88 0.00 4.70
1682 2143 8.304596 GTTTAGCTAAAATGAAACTTAAGGGCT 58.695 33.333 20.22 0.00 0.00 5.19
1683 2144 8.304596 AGTTTAGCTAAAATGAAACTTAAGGGC 58.695 33.333 20.22 2.78 38.63 5.19
1684 2145 9.626045 CAGTTTAGCTAAAATGAAACTTAAGGG 57.374 33.333 32.60 8.81 42.05 3.95
1702 2163 6.038714 CCCTGAAACATCCTAATCAGTTTAGC 59.961 42.308 0.00 0.00 38.06 3.09
1847 2326 2.230660 ACTCTGCAGTAAACCAAAGGC 58.769 47.619 14.67 0.00 0.00 4.35
2223 2702 2.224769 TGATCGGTCCTTGCCTTTTTCT 60.225 45.455 0.00 0.00 0.00 2.52
2322 2801 4.770287 CATATAGCGCTTCAAGCTTTGAG 58.230 43.478 18.68 0.00 43.24 3.02
2361 2840 0.180406 ACTAGGGTAATGGCAAGGCG 59.820 55.000 0.00 0.00 0.00 5.52
2440 3178 5.106712 TGCAGAACGAATCAAATAGTTCACC 60.107 40.000 9.39 1.51 43.71 4.02
2441 3179 5.790495 GTGCAGAACGAATCAAATAGTTCAC 59.210 40.000 9.39 2.68 43.71 3.18
2457 3198 6.360681 GTGAATTGTTCAAGTATGTGCAGAAC 59.639 38.462 5.94 5.94 42.15 3.01
2474 3215 3.010584 AGGGTGCCAATAGAGTGAATTGT 59.989 43.478 0.00 0.00 33.37 2.71
2537 3278 9.916397 GTAAAAGAATAGTATGTTCATGGAACG 57.084 33.333 4.82 0.00 44.55 3.95
2935 3717 3.441572 CCTGCCATAAGGAAAGTTCTGTG 59.558 47.826 0.00 0.00 40.02 3.66
3001 3783 2.866156 GCAAGAAAAAGGCTTGGTGAAC 59.134 45.455 0.00 0.00 42.23 3.18
3521 4306 8.729805 AAAATAACAGCAAACAAAAAGGATCA 57.270 26.923 0.00 0.00 0.00 2.92
3611 4398 5.519566 GTGACATGTTCAACAAGAATGCAAA 59.480 36.000 0.00 0.00 38.76 3.68
3641 4440 7.692460 AATAGCAGATTGTGTTCAAGATGAA 57.308 32.000 0.00 0.00 36.97 2.57
3642 4441 8.833493 CATAATAGCAGATTGTGTTCAAGATGA 58.167 33.333 0.00 0.00 36.97 2.92
3671 4470 3.966218 GCTTTGTAACGTGTACAAGCAAG 59.034 43.478 21.79 17.32 38.47 4.01
3708 4507 1.759445 GCAGGCATCAGAGGAGACTAA 59.241 52.381 0.00 0.00 44.43 2.24
3711 4510 0.461693 GTGCAGGCATCAGAGGAGAC 60.462 60.000 0.00 0.00 0.00 3.36
3803 4609 1.018226 GCTGCTTGATGAGACAGCGT 61.018 55.000 0.00 0.00 41.85 5.07
3874 4681 2.092914 GTGGGAGGTGTGATTAGAAGGG 60.093 54.545 0.00 0.00 0.00 3.95
3911 4726 6.918569 GCTAACTAGAGCGATTGAACAGATAA 59.081 38.462 0.00 0.00 31.57 1.75
3977 4796 7.201812 GGGATGCATCAACATATGTTCTGTTAA 60.202 37.037 27.25 9.28 35.15 2.01
3978 4797 6.262944 GGGATGCATCAACATATGTTCTGTTA 59.737 38.462 27.25 11.80 35.15 2.41
3989 4808 3.308035 ACATCAGGGATGCATCAACAT 57.692 42.857 27.25 10.82 43.15 2.71
4053 4872 6.443934 AGACTGCCAGCTAGTAATATATCG 57.556 41.667 0.00 0.00 0.00 2.92
4084 4995 5.299028 TGAGTGTGTATGCAAGACAAATTGT 59.701 36.000 0.00 0.00 32.32 2.71
4148 5087 1.811965 TGGGAAGCACATGAAATCACG 59.188 47.619 0.00 0.00 0.00 4.35
4184 5123 4.770795 ACTCATGCTCCATAAGGTTGTAC 58.229 43.478 0.00 0.00 35.89 2.90
4241 5180 4.894784 TCGTAGAAATCTTGGAAAGCAGT 58.105 39.130 0.00 0.00 45.70 4.40
4398 5337 8.991243 ATTCACAAAATAAGTGACATGAATGG 57.009 30.769 0.00 0.00 44.95 3.16
4562 5512 4.115516 CGATCTTCTCCACGACATTGAAT 58.884 43.478 0.00 0.00 0.00 2.57
4668 5618 0.445436 GCAGTGGTCAGAATCAAGCG 59.555 55.000 0.00 0.00 0.00 4.68
4700 5650 6.070767 GGGATAACAATATAGCTGGCAGTCTA 60.071 42.308 17.16 17.08 0.00 2.59
4701 5651 5.280215 GGGATAACAATATAGCTGGCAGTCT 60.280 44.000 17.16 15.47 0.00 3.24
4703 5653 4.350816 TGGGATAACAATATAGCTGGCAGT 59.649 41.667 17.16 5.61 0.00 4.40
4704 5654 4.910195 TGGGATAACAATATAGCTGGCAG 58.090 43.478 10.94 10.94 0.00 4.85
4706 5656 3.691609 GCTGGGATAACAATATAGCTGGC 59.308 47.826 0.00 0.00 0.00 4.85
4707 5657 5.171339 AGCTGGGATAACAATATAGCTGG 57.829 43.478 0.00 0.00 38.48 4.85
4710 5660 5.997746 TGAACAGCTGGGATAACAATATAGC 59.002 40.000 19.93 0.00 0.00 2.97
4711 5661 8.627208 AATGAACAGCTGGGATAACAATATAG 57.373 34.615 19.93 0.00 0.00 1.31
4712 5662 8.995027 AAATGAACAGCTGGGATAACAATATA 57.005 30.769 19.93 0.00 0.00 0.86
4713 5663 7.902920 AAATGAACAGCTGGGATAACAATAT 57.097 32.000 19.93 0.00 0.00 1.28
4715 5665 6.610075 AAAATGAACAGCTGGGATAACAAT 57.390 33.333 19.93 0.00 0.00 2.71
4716 5666 6.945435 TCTAAAATGAACAGCTGGGATAACAA 59.055 34.615 19.93 0.00 0.00 2.83
4717 5667 6.374333 GTCTAAAATGAACAGCTGGGATAACA 59.626 38.462 19.93 8.70 0.00 2.41
4718 5668 6.599638 AGTCTAAAATGAACAGCTGGGATAAC 59.400 38.462 19.93 3.14 0.00 1.89
4719 5669 6.599244 CAGTCTAAAATGAACAGCTGGGATAA 59.401 38.462 19.93 0.00 0.00 1.75
4720 5670 6.115446 CAGTCTAAAATGAACAGCTGGGATA 58.885 40.000 19.93 1.42 0.00 2.59
4721 5671 4.946157 CAGTCTAAAATGAACAGCTGGGAT 59.054 41.667 19.93 3.34 0.00 3.85
4724 6259 3.119708 GGCAGTCTAAAATGAACAGCTGG 60.120 47.826 19.93 0.00 0.00 4.85
4729 6264 4.098914 AGGTGGCAGTCTAAAATGAACA 57.901 40.909 0.00 0.00 0.00 3.18
4733 6268 5.712152 AAAGAAGGTGGCAGTCTAAAATG 57.288 39.130 0.00 0.00 0.00 2.32
4739 6275 3.007398 CAGTCTAAAGAAGGTGGCAGTCT 59.993 47.826 0.00 0.00 0.00 3.24
4740 6276 3.330267 CAGTCTAAAGAAGGTGGCAGTC 58.670 50.000 0.00 0.00 0.00 3.51
4742 6278 2.079925 GCAGTCTAAAGAAGGTGGCAG 58.920 52.381 0.00 0.00 0.00 4.85
4744 6280 2.185004 TGCAGTCTAAAGAAGGTGGC 57.815 50.000 0.00 0.00 0.00 5.01
4748 6284 5.947228 TTGATGTTGCAGTCTAAAGAAGG 57.053 39.130 0.00 0.00 0.00 3.46
4752 6288 6.404074 GGGAAGATTGATGTTGCAGTCTAAAG 60.404 42.308 0.00 0.00 34.28 1.85
4754 6290 4.943705 GGGAAGATTGATGTTGCAGTCTAA 59.056 41.667 0.00 0.00 34.28 2.10
4756 6292 3.245016 TGGGAAGATTGATGTTGCAGTCT 60.245 43.478 0.00 0.00 36.55 3.24
4757 6293 3.084039 TGGGAAGATTGATGTTGCAGTC 58.916 45.455 0.00 0.00 0.00 3.51
4760 6296 7.724951 TGAATATATGGGAAGATTGATGTTGCA 59.275 33.333 0.00 0.00 0.00 4.08
5579 7145 6.072508 TGCAGAAACAAATGATCCTACACTTC 60.073 38.462 0.00 0.00 0.00 3.01
5585 7151 5.181811 CAGTGTGCAGAAACAAATGATCCTA 59.818 40.000 0.00 0.00 0.00 2.94
5646 7240 9.920826 CTAAACTACAATTGTACATGCATGTAG 57.079 33.333 34.29 24.86 43.32 2.74
5685 7279 7.554211 TGCCATGTGAGCATTCAATTTATTAA 58.446 30.769 0.00 0.00 34.69 1.40
5946 7540 7.802720 CACGAGAACTATCAGAATCTACATCTG 59.197 40.741 0.00 0.00 44.53 2.90
5996 7593 2.773087 AGCTCAATCTCTCTCTGCCAAT 59.227 45.455 0.00 0.00 0.00 3.16
6121 7729 6.761312 TGTGAAGAGGTTAAAGAACGGAATA 58.239 36.000 0.00 0.00 36.32 1.75
6129 7737 7.639113 AAAACACATGTGAAGAGGTTAAAGA 57.361 32.000 31.94 0.00 0.00 2.52
6134 7742 8.237811 AGAATAAAAACACATGTGAAGAGGTT 57.762 30.769 31.94 17.81 0.00 3.50
6135 7743 7.823745 AGAATAAAAACACATGTGAAGAGGT 57.176 32.000 31.94 13.46 0.00 3.85
6136 7744 9.831737 CTAAGAATAAAAACACATGTGAAGAGG 57.168 33.333 31.94 4.85 0.00 3.69
6142 7750 8.075574 TGCTGACTAAGAATAAAAACACATGTG 58.924 33.333 24.25 24.25 0.00 3.21
6143 7751 8.165239 TGCTGACTAAGAATAAAAACACATGT 57.835 30.769 0.00 0.00 0.00 3.21
6186 7826 2.159000 CCCCTCGGTGGACAAACTATAC 60.159 54.545 0.00 0.00 38.35 1.47
6207 7855 5.926542 TCACTGAAACAACTATACTCAGCAC 59.073 40.000 0.00 0.00 37.60 4.40
6253 7905 9.775854 ATGATATCATCCAAACAAAACAAAACA 57.224 25.926 12.62 0.00 28.78 2.83
6315 7985 8.901793 TGGTGTTAATCGGTAAAAAGTTAAACT 58.098 29.630 0.00 0.00 0.00 2.66
6330 8004 9.914131 TGAATCTATCTATTCTGGTGTTAATCG 57.086 33.333 0.00 0.00 36.90 3.34
6461 8146 7.565680 TGGAAAGAATAACTAGATGGAAGGTC 58.434 38.462 0.00 0.00 0.00 3.85
6488 8174 4.551702 TGATAGACAGCAAGCCAAAGTA 57.448 40.909 0.00 0.00 0.00 2.24
6513 8200 9.168451 GAAACAGAAAAGGGAAAATTGGTAAAA 57.832 29.630 0.00 0.00 0.00 1.52
6721 8409 1.086634 CACGCTTTCTAGCCTCCTGC 61.087 60.000 0.00 0.00 44.86 4.85
6764 8454 7.600065 TCAGCGAGTAGAACAAATAGTAAAGT 58.400 34.615 0.00 0.00 0.00 2.66
6823 8522 1.600636 TTGCAGGCTTCCAGTTCCG 60.601 57.895 0.00 0.00 0.00 4.30
6836 8535 7.704789 AGCAAAAAGAAGAATTAAGTTGCAG 57.295 32.000 7.68 0.00 41.91 4.41
6849 8548 8.680903 ACATCATATGAGGTTAGCAAAAAGAAG 58.319 33.333 16.96 0.00 35.29 2.85
6855 8554 6.763135 GTCTGACATCATATGAGGTTAGCAAA 59.237 38.462 27.95 14.72 40.67 3.68
6866 8565 8.667076 TTGTAGATTTGGTCTGACATCATATG 57.333 34.615 10.38 0.00 37.83 1.78
6913 8613 6.211584 AGTTGAGTAGAGAGCCAGAATAAACA 59.788 38.462 0.00 0.00 0.00 2.83
7070 8773 6.208797 AGCAATGATTGATCAGATACAATGGG 59.791 38.462 9.76 2.82 40.64 4.00
7071 8774 7.084486 CAGCAATGATTGATCAGATACAATGG 58.916 38.462 9.76 0.00 40.64 3.16
7079 8808 7.868906 TTATTGACAGCAATGATTGATCAGA 57.131 32.000 9.76 1.88 44.18 3.27
7395 9124 0.109226 GCTACTGTCACCCTCACGTC 60.109 60.000 0.00 0.00 0.00 4.34
7408 9137 1.140589 CGGCCTCTGACTGCTACTG 59.859 63.158 0.00 0.00 0.00 2.74
7431 9160 1.071987 CTGTCTGGTTCAGCTGCCA 59.928 57.895 9.47 10.97 0.00 4.92
7448 9177 1.766461 GATCATCCCGGACCCACCT 60.766 63.158 0.73 0.00 36.31 4.00
7492 9221 2.936912 ATCGCGCATAGGAGGAGCC 61.937 63.158 8.75 0.00 0.00 4.70
7760 9489 3.624777 AGATGGACGGCAAAAATCTCAT 58.375 40.909 0.00 0.00 0.00 2.90
7814 9543 2.809665 GCTTCCAGATATCAGTGGCAGG 60.810 54.545 11.05 4.20 33.43 4.85
7881 9610 6.304356 TGACTGAGAAATAGTGCAAAGTTG 57.696 37.500 0.00 0.00 0.00 3.16
7885 9614 6.882610 AACATGACTGAGAAATAGTGCAAA 57.117 33.333 0.00 0.00 0.00 3.68
7893 9622 8.415553 TCAAAACATCAAACATGACTGAGAAAT 58.584 29.630 0.00 0.00 0.00 2.17
7927 9656 5.036737 GCAACACATTATGCATTGAGTACC 58.963 41.667 3.54 0.00 42.12 3.34
7934 9663 5.786311 ACAAAGAGCAACACATTATGCATT 58.214 33.333 3.54 0.00 44.95 3.56
7964 9693 5.185454 CCAACAGCATAGTCTGGAACATAA 58.815 41.667 0.00 0.00 38.20 1.90
7987 9716 5.883328 TTCATTATGCATACTCGACGAAC 57.117 39.130 5.74 0.00 0.00 3.95
7990 9719 4.445718 AGCTTTCATTATGCATACTCGACG 59.554 41.667 5.74 0.00 0.00 5.12
8033 9762 9.011407 GCGTCTACGAAATTAATATATCTGAGG 57.989 37.037 6.71 0.00 43.02 3.86
8046 9775 1.812507 GGCGGGCGTCTACGAAATT 60.813 57.895 6.71 0.00 43.02 1.82
8067 9796 8.458052 TGTACTTTTATCTTTATGTGCCACATG 58.542 33.333 20.36 3.96 39.53 3.21
8068 9797 8.574251 TGTACTTTTATCTTTATGTGCCACAT 57.426 30.769 15.69 15.69 42.35 3.21
8069 9798 7.987750 TGTACTTTTATCTTTATGTGCCACA 57.012 32.000 0.00 0.00 0.00 4.17
8070 9799 8.673711 TGATGTACTTTTATCTTTATGTGCCAC 58.326 33.333 0.00 0.00 0.00 5.01
8071 9800 8.800370 TGATGTACTTTTATCTTTATGTGCCA 57.200 30.769 0.00 0.00 0.00 4.92
8153 9884 8.215736 AGTCCCAAAATAAGTGTACTTACAACT 58.784 33.333 6.63 1.86 40.81 3.16
8154 9885 8.287503 CAGTCCCAAAATAAGTGTACTTACAAC 58.712 37.037 6.63 0.00 40.81 3.32
8156 9887 7.737869 TCAGTCCCAAAATAAGTGTACTTACA 58.262 34.615 6.63 0.00 40.81 2.41
8157 9888 7.148457 GCTCAGTCCCAAAATAAGTGTACTTAC 60.148 40.741 6.63 0.00 40.81 2.34
8158 9889 6.877322 GCTCAGTCCCAAAATAAGTGTACTTA 59.123 38.462 6.92 6.92 42.04 2.24
8159 9890 5.705905 GCTCAGTCCCAAAATAAGTGTACTT 59.294 40.000 2.51 2.51 39.85 2.24
8160 9891 5.221843 TGCTCAGTCCCAAAATAAGTGTACT 60.222 40.000 0.00 0.00 0.00 2.73
8161 9892 5.001232 TGCTCAGTCCCAAAATAAGTGTAC 58.999 41.667 0.00 0.00 0.00 2.90
8162 9893 5.235850 TGCTCAGTCCCAAAATAAGTGTA 57.764 39.130 0.00 0.00 0.00 2.90
8164 9895 4.520492 ACTTGCTCAGTCCCAAAATAAGTG 59.480 41.667 0.00 0.00 0.00 3.16
8165 9896 4.729868 ACTTGCTCAGTCCCAAAATAAGT 58.270 39.130 0.00 0.00 0.00 2.24
8179 13063 5.790618 AGGGGGCTTATTATATACTTGCTCA 59.209 40.000 0.00 0.00 0.00 4.26
8183 13067 9.588096 AAGAAAAGGGGGCTTATTATATACTTG 57.412 33.333 0.00 0.00 0.00 3.16
8216 13100 4.116961 GGCACAAACCTAAACCAGTTTTC 58.883 43.478 0.37 0.00 34.02 2.29
8248 13132 7.997773 ACAGGTCGCTATGAGAGTATATTTA 57.002 36.000 0.00 0.00 0.00 1.40
8251 13135 7.997773 TTTACAGGTCGCTATGAGAGTATAT 57.002 36.000 0.00 0.00 0.00 0.86
8252 13136 7.812690 TTTTACAGGTCGCTATGAGAGTATA 57.187 36.000 0.00 0.00 0.00 1.47
8253 13137 6.710597 TTTTACAGGTCGCTATGAGAGTAT 57.289 37.500 0.00 0.00 0.00 2.12
8254 13138 6.320418 TGATTTTACAGGTCGCTATGAGAGTA 59.680 38.462 0.00 0.00 0.00 2.59
8296 13180 5.304614 CAGGAAGTCGAATATTCCCCTAGAA 59.695 44.000 17.34 0.00 45.13 2.10
8466 13350 2.814336 CCCCCGAAGTTTTGAAGAAGAG 59.186 50.000 0.00 0.00 0.00 2.85
8467 13351 2.173996 ACCCCCGAAGTTTTGAAGAAGA 59.826 45.455 0.00 0.00 0.00 2.87
8506 13390 1.065928 GGGACGTCACTAGCATCGG 59.934 63.158 18.91 0.00 0.00 4.18
8573 13457 2.550101 GGCATCGAGAGCAATGGGC 61.550 63.158 13.72 0.00 45.30 5.36
8574 13458 1.153107 TGGCATCGAGAGCAATGGG 60.153 57.895 13.72 0.00 0.00 4.00
8575 13459 1.783031 GCTGGCATCGAGAGCAATGG 61.783 60.000 13.72 3.09 32.70 3.16
8576 13460 1.647629 GCTGGCATCGAGAGCAATG 59.352 57.895 13.72 5.12 32.70 2.82
8577 13461 1.886313 CGCTGGCATCGAGAGCAAT 60.886 57.895 4.45 0.00 32.70 3.56
8578 13462 2.510012 CGCTGGCATCGAGAGCAA 60.510 61.111 4.45 2.53 32.70 3.91
8580 13464 4.887987 AGCGCTGGCATCGAGAGC 62.888 66.667 10.39 3.31 43.41 4.09
8581 13465 2.657944 GAGCGCTGGCATCGAGAG 60.658 66.667 18.48 0.00 43.41 3.20
8582 13466 4.559229 CGAGCGCTGGCATCGAGA 62.559 66.667 18.48 0.00 43.41 4.04
8600 13484 4.738998 TGATGGGGCAAGGTGCGG 62.739 66.667 0.00 0.00 46.21 5.69
8601 13485 3.136123 CTGATGGGGCAAGGTGCG 61.136 66.667 0.00 0.00 46.21 5.34
8602 13486 3.455469 GCTGATGGGGCAAGGTGC 61.455 66.667 0.00 0.00 44.08 5.01
8603 13487 3.136123 CGCTGATGGGGCAAGGTG 61.136 66.667 0.00 0.00 0.00 4.00
8604 13488 4.431131 CCGCTGATGGGGCAAGGT 62.431 66.667 0.00 0.00 39.46 3.50
8611 13495 2.256591 GCTACATGCCGCTGATGGG 61.257 63.158 0.00 0.00 35.15 4.00
8612 13496 3.337619 GCTACATGCCGCTGATGG 58.662 61.111 0.00 0.00 35.15 3.51
8621 13505 1.889573 GAAGAGCGGGGCTACATGC 60.890 63.158 0.00 0.00 39.88 4.06
8622 13506 1.592669 CGAAGAGCGGGGCTACATG 60.593 63.158 0.00 0.00 39.88 3.21
8623 13507 2.815308 CGAAGAGCGGGGCTACAT 59.185 61.111 0.00 0.00 39.88 2.29
8624 13508 4.143333 GCGAAGAGCGGGGCTACA 62.143 66.667 0.00 0.00 39.88 2.74
8641 13525 1.226859 TCAAGGCGGCGAAGATACG 60.227 57.895 12.98 0.00 0.00 3.06
8642 13526 1.152383 GGTCAAGGCGGCGAAGATAC 61.152 60.000 12.98 1.92 0.00 2.24
8643 13527 1.143183 GGTCAAGGCGGCGAAGATA 59.857 57.895 12.98 0.00 0.00 1.98
8644 13528 2.125106 GGTCAAGGCGGCGAAGAT 60.125 61.111 12.98 0.00 0.00 2.40
8645 13529 4.735132 CGGTCAAGGCGGCGAAGA 62.735 66.667 12.98 0.00 0.00 2.87
8646 13530 3.636313 TACGGTCAAGGCGGCGAAG 62.636 63.158 12.98 0.00 0.00 3.79
8647 13531 3.636313 CTACGGTCAAGGCGGCGAA 62.636 63.158 12.98 0.00 0.00 4.70
8648 13532 4.124351 CTACGGTCAAGGCGGCGA 62.124 66.667 12.98 0.00 0.00 5.54
8649 13533 4.430765 ACTACGGTCAAGGCGGCG 62.431 66.667 0.51 0.51 0.00 6.46
8650 13534 2.508663 GACTACGGTCAAGGCGGC 60.509 66.667 0.00 0.00 41.75 6.53
8658 13542 0.739813 GTGGTGGCATGACTACGGTC 60.740 60.000 0.00 0.00 42.42 4.79
8659 13543 1.295423 GTGGTGGCATGACTACGGT 59.705 57.895 0.00 0.00 0.00 4.83
8660 13544 1.019278 GTGTGGTGGCATGACTACGG 61.019 60.000 0.00 0.00 30.23 4.02
8661 13545 1.019278 GGTGTGGTGGCATGACTACG 61.019 60.000 0.00 0.00 30.23 3.51
8662 13546 1.019278 CGGTGTGGTGGCATGACTAC 61.019 60.000 0.00 0.00 0.00 2.73
8663 13547 1.295101 CGGTGTGGTGGCATGACTA 59.705 57.895 0.00 0.00 0.00 2.59
8664 13548 2.032528 CGGTGTGGTGGCATGACT 59.967 61.111 0.00 0.00 0.00 3.41
8665 13549 2.281484 ACGGTGTGGTGGCATGAC 60.281 61.111 0.00 0.00 0.00 3.06
8666 13550 2.031919 GACGGTGTGGTGGCATGA 59.968 61.111 0.00 0.00 0.00 3.07
8667 13551 2.032528 AGACGGTGTGGTGGCATG 59.967 61.111 0.00 0.00 0.00 4.06
8668 13552 2.347490 GAGACGGTGTGGTGGCAT 59.653 61.111 0.00 0.00 0.00 4.40
8669 13553 4.293648 CGAGACGGTGTGGTGGCA 62.294 66.667 0.00 0.00 0.00 4.92
8674 13558 4.742201 CAGGGCGAGACGGTGTGG 62.742 72.222 0.00 0.00 0.00 4.17
8687 13571 1.386533 CAGATAAAGCCACAGCAGGG 58.613 55.000 0.00 0.00 43.56 4.45
8688 13572 0.737219 GCAGATAAAGCCACAGCAGG 59.263 55.000 0.00 0.00 43.56 4.85
8689 13573 1.669779 GAGCAGATAAAGCCACAGCAG 59.330 52.381 0.00 0.00 43.56 4.24
8690 13574 1.742761 GAGCAGATAAAGCCACAGCA 58.257 50.000 0.00 0.00 43.56 4.41
8691 13575 0.654683 CGAGCAGATAAAGCCACAGC 59.345 55.000 0.00 0.00 40.32 4.40
8692 13576 0.654683 GCGAGCAGATAAAGCCACAG 59.345 55.000 0.00 0.00 0.00 3.66
8693 13577 0.744414 GGCGAGCAGATAAAGCCACA 60.744 55.000 0.00 0.00 46.48 4.17
8694 13578 2.017752 GGCGAGCAGATAAAGCCAC 58.982 57.895 0.00 0.00 46.48 5.01
8695 13579 4.540153 GGCGAGCAGATAAAGCCA 57.460 55.556 0.00 0.00 46.48 4.75
8696 13580 2.247437 CCGGCGAGCAGATAAAGCC 61.247 63.158 9.30 0.00 44.00 4.35
8697 13581 1.521681 ACCGGCGAGCAGATAAAGC 60.522 57.895 9.30 0.00 0.00 3.51
8698 13582 0.179111 TCACCGGCGAGCAGATAAAG 60.179 55.000 9.30 0.00 0.00 1.85
8699 13583 0.459585 GTCACCGGCGAGCAGATAAA 60.460 55.000 9.30 0.00 0.00 1.40
8700 13584 1.141019 GTCACCGGCGAGCAGATAA 59.859 57.895 9.30 0.00 0.00 1.75
8701 13585 2.004808 CTGTCACCGGCGAGCAGATA 62.005 60.000 9.30 0.00 0.00 1.98
8702 13586 3.362399 CTGTCACCGGCGAGCAGAT 62.362 63.158 9.30 0.00 0.00 2.90
8703 13587 4.056125 CTGTCACCGGCGAGCAGA 62.056 66.667 9.30 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.