Multiple sequence alignment - TraesCS3B01G019400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G019400 chr3B 100.000 2594 0 0 1 2594 8155168 8152575 0.000000e+00 4791.0
1 TraesCS3B01G019400 chr3B 94.104 441 18 7 1743 2180 613752156 613752591 0.000000e+00 664.0
2 TraesCS3B01G019400 chr3B 97.273 110 3 0 505 614 452977083 452976974 1.230000e-43 187.0
3 TraesCS3B01G019400 chr3D 89.138 1160 46 28 658 1754 6739198 6738056 0.000000e+00 1371.0
4 TraesCS3B01G019400 chr3D 87.324 426 23 10 2173 2594 6737710 6737312 2.350000e-125 459.0
5 TraesCS3B01G019400 chr3D 79.581 382 41 24 135 498 6739595 6739233 3.340000e-59 239.0
6 TraesCS3B01G019400 chr3A 87.626 1188 30 39 638 1749 13509187 13510333 0.000000e+00 1271.0
7 TraesCS3B01G019400 chr3A 87.662 308 19 9 2247 2550 13510496 13510788 8.890000e-90 340.0
8 TraesCS3B01G019400 chr3A 75.581 344 43 26 175 493 13508839 13509166 5.820000e-27 132.0
9 TraesCS3B01G019400 chr3A 93.506 77 5 0 2173 2249 13510332 13510408 5.870000e-22 115.0
10 TraesCS3B01G019400 chr3A 89.855 69 3 2 85 152 13508785 13508850 4.600000e-13 86.1
11 TraesCS3B01G019400 chr3A 100.000 29 0 0 2566 2594 13510789 13510817 1.000000e-03 54.7
12 TraesCS3B01G019400 chr2B 98.058 412 8 0 1755 2166 542561762 542561351 0.000000e+00 717.0
13 TraesCS3B01G019400 chr2B 95.316 427 18 2 1748 2173 32923115 32923540 0.000000e+00 676.0
14 TraesCS3B01G019400 chr2B 95.116 430 19 2 1742 2171 756160513 756160086 0.000000e+00 676.0
15 TraesCS3B01G019400 chr2B 98.198 111 2 0 504 614 213374626 213374516 7.320000e-46 195.0
16 TraesCS3B01G019400 chr2B 97.273 110 3 0 505 614 76928420 76928529 1.230000e-43 187.0
17 TraesCS3B01G019400 chr2B 94.068 118 7 0 497 614 621062642 621062525 2.050000e-41 180.0
18 TraesCS3B01G019400 chr6B 97.073 410 12 0 1755 2164 716442615 716442206 0.000000e+00 691.0
19 TraesCS3B01G019400 chr7B 96.172 418 13 2 1753 2167 56475103 56474686 0.000000e+00 680.0
20 TraesCS3B01G019400 chr1B 96.386 415 12 3 1753 2167 432438342 432438753 0.000000e+00 680.0
21 TraesCS3B01G019400 chr1B 95.508 423 17 2 1755 2176 45194543 45194964 0.000000e+00 675.0
22 TraesCS3B01G019400 chrUn 95.316 427 18 2 1748 2173 276926598 276927023 0.000000e+00 676.0
23 TraesCS3B01G019400 chr5B 98.182 110 2 0 504 613 36727664 36727555 2.630000e-45 193.0
24 TraesCS3B01G019400 chr1A 95.763 118 5 0 497 614 12006874 12006757 9.470000e-45 191.0
25 TraesCS3B01G019400 chr5A 97.248 109 3 0 504 612 688927545 688927653 4.410000e-43 185.0
26 TraesCS3B01G019400 chr5D 94.068 118 5 2 505 622 70640591 70640476 7.380000e-41 178.0
27 TraesCS3B01G019400 chr4D 92.742 124 6 3 504 626 419491530 419491651 2.650000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G019400 chr3B 8152575 8155168 2593 True 4791.000000 4791 100.000000 1 2594 1 chr3B.!!$R1 2593
1 TraesCS3B01G019400 chr3D 6737312 6739595 2283 True 689.666667 1371 85.347667 135 2594 3 chr3D.!!$R1 2459
2 TraesCS3B01G019400 chr3A 13508785 13510817 2032 False 333.133333 1271 89.038333 85 2594 6 chr3A.!!$F1 2509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.027716 CGAGTGATCGATCGACCGTT 59.972 55.0 22.06 3.88 41.4 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1876 2356 0.033366 AGTTGAATTTTGGGGCGCAC 59.967 50.0 10.83 4.83 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.837093 TCCTTTGGATGATTTACCGAGT 57.163 40.909 0.00 0.00 0.00 4.18
23 24 4.513442 TCCTTTGGATGATTTACCGAGTG 58.487 43.478 0.00 0.00 0.00 3.51
24 25 4.224147 TCCTTTGGATGATTTACCGAGTGA 59.776 41.667 0.00 0.00 0.00 3.41
25 26 5.104527 TCCTTTGGATGATTTACCGAGTGAT 60.105 40.000 0.00 0.00 0.00 3.06
26 27 5.237344 CCTTTGGATGATTTACCGAGTGATC 59.763 44.000 0.00 0.00 0.00 2.92
27 28 3.977427 TGGATGATTTACCGAGTGATCG 58.023 45.455 0.00 0.00 0.00 3.69
28 29 3.634910 TGGATGATTTACCGAGTGATCGA 59.365 43.478 0.00 0.00 34.64 3.59
29 30 4.280929 TGGATGATTTACCGAGTGATCGAT 59.719 41.667 0.00 0.00 34.64 3.59
30 31 4.859798 GGATGATTTACCGAGTGATCGATC 59.140 45.833 18.72 18.72 34.64 3.69
31 32 3.885358 TGATTTACCGAGTGATCGATCG 58.115 45.455 20.03 9.36 38.65 3.69
32 33 3.562557 TGATTTACCGAGTGATCGATCGA 59.437 43.478 21.86 21.86 41.40 3.59
33 34 3.329743 TTTACCGAGTGATCGATCGAC 57.670 47.619 22.06 17.58 41.40 4.20
34 35 1.224075 TACCGAGTGATCGATCGACC 58.776 55.000 22.06 12.29 41.40 4.79
35 36 1.082692 CCGAGTGATCGATCGACCG 60.083 63.158 22.06 19.68 41.40 4.79
36 37 1.642215 CGAGTGATCGATCGACCGT 59.358 57.895 22.06 4.32 41.40 4.83
37 38 0.027716 CGAGTGATCGATCGACCGTT 59.972 55.000 22.06 3.88 41.40 4.44
38 39 1.531264 CGAGTGATCGATCGACCGTTT 60.531 52.381 22.06 3.42 41.40 3.60
39 40 2.286008 CGAGTGATCGATCGACCGTTTA 60.286 50.000 22.06 0.00 41.40 2.01
40 41 3.034562 GAGTGATCGATCGACCGTTTAC 58.965 50.000 22.06 11.42 0.00 2.01
41 42 2.114825 GTGATCGATCGACCGTTTACC 58.885 52.381 22.06 3.18 0.00 2.85
42 43 1.066002 TGATCGATCGACCGTTTACCC 59.934 52.381 22.06 2.16 0.00 3.69
43 44 1.066002 GATCGATCGACCGTTTACCCA 59.934 52.381 22.06 0.00 0.00 4.51
44 45 1.105457 TCGATCGACCGTTTACCCAT 58.895 50.000 15.15 0.00 0.00 4.00
45 46 1.066002 TCGATCGACCGTTTACCCATC 59.934 52.381 15.15 0.00 0.00 3.51
46 47 1.861971 GATCGACCGTTTACCCATCC 58.138 55.000 0.00 0.00 0.00 3.51
47 48 1.137479 GATCGACCGTTTACCCATCCA 59.863 52.381 0.00 0.00 0.00 3.41
48 49 1.196911 TCGACCGTTTACCCATCCAT 58.803 50.000 0.00 0.00 0.00 3.41
49 50 2.386779 TCGACCGTTTACCCATCCATA 58.613 47.619 0.00 0.00 0.00 2.74
50 51 2.101249 TCGACCGTTTACCCATCCATAC 59.899 50.000 0.00 0.00 0.00 2.39
51 52 2.159071 CGACCGTTTACCCATCCATACA 60.159 50.000 0.00 0.00 0.00 2.29
52 53 3.493699 CGACCGTTTACCCATCCATACAT 60.494 47.826 0.00 0.00 0.00 2.29
53 54 4.062991 GACCGTTTACCCATCCATACATC 58.937 47.826 0.00 0.00 0.00 3.06
54 55 3.181448 ACCGTTTACCCATCCATACATCC 60.181 47.826 0.00 0.00 0.00 3.51
55 56 3.072476 CCGTTTACCCATCCATACATCCT 59.928 47.826 0.00 0.00 0.00 3.24
56 57 4.445735 CCGTTTACCCATCCATACATCCTT 60.446 45.833 0.00 0.00 0.00 3.36
57 58 4.755123 CGTTTACCCATCCATACATCCTTC 59.245 45.833 0.00 0.00 0.00 3.46
58 59 4.993705 TTACCCATCCATACATCCTTCC 57.006 45.455 0.00 0.00 0.00 3.46
59 60 2.787956 ACCCATCCATACATCCTTCCA 58.212 47.619 0.00 0.00 0.00 3.53
60 61 3.130450 ACCCATCCATACATCCTTCCAA 58.870 45.455 0.00 0.00 0.00 3.53
61 62 3.117512 ACCCATCCATACATCCTTCCAAC 60.118 47.826 0.00 0.00 0.00 3.77
62 63 3.141398 CCATCCATACATCCTTCCAACG 58.859 50.000 0.00 0.00 0.00 4.10
63 64 3.433598 CCATCCATACATCCTTCCAACGT 60.434 47.826 0.00 0.00 0.00 3.99
64 65 3.260475 TCCATACATCCTTCCAACGTG 57.740 47.619 0.00 0.00 0.00 4.49
65 66 2.569853 TCCATACATCCTTCCAACGTGT 59.430 45.455 0.00 0.00 0.00 4.49
66 67 2.677836 CCATACATCCTTCCAACGTGTG 59.322 50.000 0.00 0.00 0.00 3.82
67 68 1.803334 TACATCCTTCCAACGTGTGC 58.197 50.000 0.00 0.00 0.00 4.57
68 69 0.179032 ACATCCTTCCAACGTGTGCA 60.179 50.000 0.00 0.00 0.00 4.57
69 70 0.518636 CATCCTTCCAACGTGTGCAG 59.481 55.000 0.00 0.00 0.00 4.41
70 71 0.108585 ATCCTTCCAACGTGTGCAGT 59.891 50.000 0.00 0.00 0.00 4.40
71 72 0.813610 TCCTTCCAACGTGTGCAGTG 60.814 55.000 0.00 0.00 0.00 3.66
72 73 1.009675 CTTCCAACGTGTGCAGTGC 60.010 57.895 8.58 8.58 0.00 4.40
73 74 1.713937 CTTCCAACGTGTGCAGTGCA 61.714 55.000 15.37 15.37 35.60 4.57
82 83 2.828095 TGCAGTGCACGTTTGGCT 60.828 55.556 15.37 0.00 31.71 4.75
83 84 1.524849 TGCAGTGCACGTTTGGCTA 60.525 52.632 15.37 0.89 31.71 3.93
84 85 1.207593 GCAGTGCACGTTTGGCTAG 59.792 57.895 11.09 0.00 0.00 3.42
85 86 1.227999 GCAGTGCACGTTTGGCTAGA 61.228 55.000 11.09 0.00 0.00 2.43
86 87 1.225855 CAGTGCACGTTTGGCTAGAA 58.774 50.000 12.01 0.00 0.00 2.10
87 88 1.069906 CAGTGCACGTTTGGCTAGAAC 60.070 52.381 12.01 0.00 0.00 3.01
88 89 0.941542 GTGCACGTTTGGCTAGAACA 59.058 50.000 0.00 0.00 0.00 3.18
89 90 1.332375 GTGCACGTTTGGCTAGAACAA 59.668 47.619 0.00 0.00 0.00 2.83
90 91 1.601903 TGCACGTTTGGCTAGAACAAG 59.398 47.619 0.00 0.00 0.00 3.16
91 92 1.663161 GCACGTTTGGCTAGAACAAGC 60.663 52.381 0.00 0.00 41.99 4.01
97 98 2.133281 TGGCTAGAACAAGCATGCAT 57.867 45.000 21.98 4.57 44.64 3.96
110 111 3.719816 ATGCATGCATGATCCTCGT 57.280 47.368 31.74 10.36 35.03 4.18
111 112 1.520494 ATGCATGCATGATCCTCGTC 58.480 50.000 31.74 10.13 35.03 4.20
112 113 0.877213 TGCATGCATGATCCTCGTCG 60.877 55.000 30.64 0.00 0.00 5.12
161 162 1.941294 CTGCAGATTGACAGATCCAGC 59.059 52.381 8.42 0.00 35.90 4.85
171 172 0.665298 CAGATCCAGCGACTCGATCA 59.335 55.000 1.63 0.00 35.82 2.92
177 178 1.336440 CCAGCGACTCGATCATCTCTT 59.664 52.381 1.63 0.00 0.00 2.85
193 194 5.427806 TCATCTCTTCAGATTGAACCCATCT 59.572 40.000 0.00 0.00 37.25 2.90
195 196 5.494724 TCTCTTCAGATTGAACCCATCTTG 58.505 41.667 0.00 0.00 32.21 3.02
197 198 5.248640 TCTTCAGATTGAACCCATCTTGTC 58.751 41.667 0.00 0.00 32.21 3.18
201 202 4.397417 CAGATTGAACCCATCTTGTCTTCC 59.603 45.833 0.00 0.00 0.00 3.46
204 205 2.978978 TGAACCCATCTTGTCTTCCTCA 59.021 45.455 0.00 0.00 0.00 3.86
206 207 3.922171 ACCCATCTTGTCTTCCTCATC 57.078 47.619 0.00 0.00 0.00 2.92
209 210 5.032846 ACCCATCTTGTCTTCCTCATCTTA 58.967 41.667 0.00 0.00 0.00 2.10
210 211 5.669447 ACCCATCTTGTCTTCCTCATCTTAT 59.331 40.000 0.00 0.00 0.00 1.73
211 212 5.996513 CCCATCTTGTCTTCCTCATCTTATG 59.003 44.000 0.00 0.00 0.00 1.90
212 213 5.469421 CCATCTTGTCTTCCTCATCTTATGC 59.531 44.000 0.00 0.00 0.00 3.14
215 216 5.660417 TCTTGTCTTCCTCATCTTATGCTCT 59.340 40.000 0.00 0.00 0.00 4.09
217 218 7.343057 TCTTGTCTTCCTCATCTTATGCTCTTA 59.657 37.037 0.00 0.00 0.00 2.10
219 220 8.027524 TGTCTTCCTCATCTTATGCTCTTAAT 57.972 34.615 0.00 0.00 0.00 1.40
221 222 9.988815 GTCTTCCTCATCTTATGCTCTTAATTA 57.011 33.333 0.00 0.00 0.00 1.40
224 225 8.818141 TCCTCATCTTATGCTCTTAATTAACG 57.182 34.615 0.00 0.00 0.00 3.18
242 246 1.353022 ACGTAGAAAGGAAATGGCCCA 59.647 47.619 0.00 0.00 0.00 5.36
270 274 1.668419 CCCCTTGCTCCAACTAATCG 58.332 55.000 0.00 0.00 0.00 3.34
284 293 7.394816 TCCAACTAATCGAGAAGGAAAAAGAT 58.605 34.615 0.00 0.00 31.59 2.40
285 294 8.537016 TCCAACTAATCGAGAAGGAAAAAGATA 58.463 33.333 0.00 0.00 31.59 1.98
286 295 8.821894 CCAACTAATCGAGAAGGAAAAAGATAG 58.178 37.037 0.00 0.00 0.00 2.08
287 296 9.587772 CAACTAATCGAGAAGGAAAAAGATAGA 57.412 33.333 0.00 0.00 0.00 1.98
309 318 5.875359 AGATAAACCCTCTGAATTGTTCGTC 59.125 40.000 0.00 0.00 0.00 4.20
313 322 1.726791 CCTCTGAATTGTTCGTCGTGG 59.273 52.381 0.00 0.00 0.00 4.94
315 324 0.179250 CTGAATTGTTCGTCGTGGCG 60.179 55.000 0.00 0.00 0.00 5.69
316 325 0.876777 TGAATTGTTCGTCGTGGCGT 60.877 50.000 0.00 0.00 0.00 5.68
317 326 1.062258 GAATTGTTCGTCGTGGCGTA 58.938 50.000 0.00 0.00 0.00 4.42
341 356 2.762887 ACTCAGCAATGAGTAGCTAGCA 59.237 45.455 18.83 0.00 46.23 3.49
368 401 3.745799 TGCCGGACTGAATTTGTTAAGA 58.254 40.909 5.05 0.00 0.00 2.10
369 402 3.751175 TGCCGGACTGAATTTGTTAAGAG 59.249 43.478 5.05 0.00 0.00 2.85
370 403 3.127030 GCCGGACTGAATTTGTTAAGAGG 59.873 47.826 5.05 0.00 0.00 3.69
371 404 3.127030 CCGGACTGAATTTGTTAAGAGGC 59.873 47.826 0.00 0.00 0.00 4.70
373 406 3.127030 GGACTGAATTTGTTAAGAGGCCG 59.873 47.826 0.00 0.00 0.00 6.13
375 408 1.466950 TGAATTTGTTAAGAGGCCGCG 59.533 47.619 0.00 0.00 0.00 6.46
376 409 0.170339 AATTTGTTAAGAGGCCGCGC 59.830 50.000 0.00 0.00 0.00 6.86
377 410 1.977594 ATTTGTTAAGAGGCCGCGCG 61.978 55.000 25.67 25.67 0.00 6.86
378 411 3.576932 TTGTTAAGAGGCCGCGCGA 62.577 57.895 34.63 6.09 0.00 5.87
379 412 3.255379 GTTAAGAGGCCGCGCGAG 61.255 66.667 34.63 22.41 0.00 5.03
380 413 3.445687 TTAAGAGGCCGCGCGAGA 61.446 61.111 34.63 4.65 0.00 4.04
472 505 2.507102 CGCTACAGTGACGCCCTG 60.507 66.667 0.00 0.00 36.01 4.45
484 517 3.455469 GCCCTGCCAAGACCATGC 61.455 66.667 0.00 0.00 0.00 4.06
493 526 2.286872 CCAAGACCATGCTCTGTCATC 58.713 52.381 3.19 0.00 33.89 2.92
498 531 6.463472 CCAAGACCATGCTCTGTCATCTTATA 60.463 42.308 3.19 0.00 33.89 0.98
499 532 6.931790 AGACCATGCTCTGTCATCTTATAT 57.068 37.500 3.19 0.00 33.89 0.86
500 533 8.309656 CAAGACCATGCTCTGTCATCTTATATA 58.690 37.037 3.19 0.00 33.89 0.86
501 534 8.606754 AGACCATGCTCTGTCATCTTATATAT 57.393 34.615 3.19 0.00 33.89 0.86
502 535 8.476447 AGACCATGCTCTGTCATCTTATATATG 58.524 37.037 0.00 0.00 33.89 1.78
503 536 7.046652 ACCATGCTCTGTCATCTTATATATGC 58.953 38.462 0.00 0.00 0.00 3.14
504 537 7.092979 ACCATGCTCTGTCATCTTATATATGCT 60.093 37.037 0.00 0.00 0.00 3.79
505 538 8.419442 CCATGCTCTGTCATCTTATATATGCTA 58.581 37.037 0.00 0.00 0.00 3.49
506 539 9.247126 CATGCTCTGTCATCTTATATATGCTAC 57.753 37.037 0.00 0.00 0.00 3.58
507 540 8.586879 TGCTCTGTCATCTTATATATGCTACT 57.413 34.615 0.00 0.00 0.00 2.57
508 541 8.681806 TGCTCTGTCATCTTATATATGCTACTC 58.318 37.037 0.00 0.00 0.00 2.59
509 542 8.134895 GCTCTGTCATCTTATATATGCTACTCC 58.865 40.741 0.00 0.00 0.00 3.85
510 543 8.526667 TCTGTCATCTTATATATGCTACTCCC 57.473 38.462 0.00 0.00 0.00 4.30
511 544 8.340002 TCTGTCATCTTATATATGCTACTCCCT 58.660 37.037 0.00 0.00 0.00 4.20
512 545 8.526667 TGTCATCTTATATATGCTACTCCCTC 57.473 38.462 0.00 0.00 0.00 4.30
513 546 8.340002 TGTCATCTTATATATGCTACTCCCTCT 58.660 37.037 0.00 0.00 0.00 3.69
514 547 8.629158 GTCATCTTATATATGCTACTCCCTCTG 58.371 40.741 0.00 0.00 0.00 3.35
515 548 8.340002 TCATCTTATATATGCTACTCCCTCTGT 58.660 37.037 0.00 0.00 0.00 3.41
516 549 8.976353 CATCTTATATATGCTACTCCCTCTGTT 58.024 37.037 0.00 0.00 0.00 3.16
517 550 8.582657 TCTTATATATGCTACTCCCTCTGTTC 57.417 38.462 0.00 0.00 0.00 3.18
518 551 8.170730 TCTTATATATGCTACTCCCTCTGTTCA 58.829 37.037 0.00 0.00 0.00 3.18
519 552 4.946478 ATATGCTACTCCCTCTGTTCAC 57.054 45.455 0.00 0.00 0.00 3.18
520 553 2.310779 TGCTACTCCCTCTGTTCACT 57.689 50.000 0.00 0.00 0.00 3.41
521 554 2.609747 TGCTACTCCCTCTGTTCACTT 58.390 47.619 0.00 0.00 0.00 3.16
522 555 2.972713 TGCTACTCCCTCTGTTCACTTT 59.027 45.455 0.00 0.00 0.00 2.66
523 556 3.391296 TGCTACTCCCTCTGTTCACTTTT 59.609 43.478 0.00 0.00 0.00 2.27
524 557 4.591498 TGCTACTCCCTCTGTTCACTTTTA 59.409 41.667 0.00 0.00 0.00 1.52
525 558 5.248477 TGCTACTCCCTCTGTTCACTTTTAT 59.752 40.000 0.00 0.00 0.00 1.40
526 559 6.439375 TGCTACTCCCTCTGTTCACTTTTATA 59.561 38.462 0.00 0.00 0.00 0.98
527 560 7.038587 TGCTACTCCCTCTGTTCACTTTTATAA 60.039 37.037 0.00 0.00 0.00 0.98
528 561 7.492994 GCTACTCCCTCTGTTCACTTTTATAAG 59.507 40.741 0.00 0.00 37.40 1.73
529 562 7.554959 ACTCCCTCTGTTCACTTTTATAAGA 57.445 36.000 0.00 0.00 35.30 2.10
530 563 7.387643 ACTCCCTCTGTTCACTTTTATAAGAC 58.612 38.462 0.00 0.00 35.30 3.01
531 564 6.708285 TCCCTCTGTTCACTTTTATAAGACC 58.292 40.000 0.00 0.00 35.30 3.85
532 565 6.500751 TCCCTCTGTTCACTTTTATAAGACCT 59.499 38.462 0.00 0.00 35.30 3.85
533 566 6.819146 CCCTCTGTTCACTTTTATAAGACCTC 59.181 42.308 0.00 0.00 35.30 3.85
534 567 6.531948 CCTCTGTTCACTTTTATAAGACCTCG 59.468 42.308 0.00 0.00 35.30 4.63
535 568 7.223260 TCTGTTCACTTTTATAAGACCTCGA 57.777 36.000 0.00 0.00 35.30 4.04
536 569 7.663827 TCTGTTCACTTTTATAAGACCTCGAA 58.336 34.615 0.00 0.00 35.30 3.71
537 570 7.813148 TCTGTTCACTTTTATAAGACCTCGAAG 59.187 37.037 0.00 0.00 35.30 3.79
538 571 7.663827 TGTTCACTTTTATAAGACCTCGAAGA 58.336 34.615 0.00 0.00 35.30 2.87
539 572 7.597743 TGTTCACTTTTATAAGACCTCGAAGAC 59.402 37.037 0.00 0.00 35.30 3.01
540 573 7.223260 TCACTTTTATAAGACCTCGAAGACA 57.777 36.000 0.00 0.00 35.30 3.41
541 574 7.837863 TCACTTTTATAAGACCTCGAAGACAT 58.162 34.615 0.00 0.00 35.30 3.06
542 575 8.311836 TCACTTTTATAAGACCTCGAAGACATT 58.688 33.333 0.00 0.00 35.30 2.71
543 576 8.936864 CACTTTTATAAGACCTCGAAGACATTT 58.063 33.333 0.00 0.00 35.30 2.32
544 577 9.152595 ACTTTTATAAGACCTCGAAGACATTTC 57.847 33.333 0.00 0.00 35.30 2.17
545 578 9.151471 CTTTTATAAGACCTCGAAGACATTTCA 57.849 33.333 0.00 0.00 32.92 2.69
546 579 8.703604 TTTATAAGACCTCGAAGACATTTCAG 57.296 34.615 0.00 0.00 0.00 3.02
547 580 4.873746 AAGACCTCGAAGACATTTCAGA 57.126 40.909 0.00 0.00 0.00 3.27
548 581 4.181309 AGACCTCGAAGACATTTCAGAC 57.819 45.455 0.00 0.00 0.00 3.51
549 582 3.574396 AGACCTCGAAGACATTTCAGACA 59.426 43.478 0.00 0.00 0.00 3.41
550 583 4.039245 AGACCTCGAAGACATTTCAGACAA 59.961 41.667 0.00 0.00 0.00 3.18
551 584 4.899502 ACCTCGAAGACATTTCAGACAAT 58.100 39.130 0.00 0.00 0.00 2.71
552 585 4.692625 ACCTCGAAGACATTTCAGACAATG 59.307 41.667 0.00 0.00 39.67 2.82
554 587 5.390251 CCTCGAAGACATTTCAGACAATGTG 60.390 44.000 12.82 3.24 45.55 3.21
555 588 4.083855 TCGAAGACATTTCAGACAATGTGC 60.084 41.667 12.82 7.29 45.55 4.57
556 589 4.319694 CGAAGACATTTCAGACAATGTGCA 60.320 41.667 12.82 0.00 45.55 4.57
557 590 5.518848 AAGACATTTCAGACAATGTGCAA 57.481 34.783 12.82 0.00 45.55 4.08
558 591 5.518848 AGACATTTCAGACAATGTGCAAA 57.481 34.783 12.82 0.00 45.55 3.68
559 592 5.904941 AGACATTTCAGACAATGTGCAAAA 58.095 33.333 12.82 0.00 45.55 2.44
560 593 5.750067 AGACATTTCAGACAATGTGCAAAAC 59.250 36.000 12.82 2.36 45.55 2.43
561 594 5.417811 ACATTTCAGACAATGTGCAAAACA 58.582 33.333 0.00 0.00 44.19 2.83
562 595 5.521010 ACATTTCAGACAATGTGCAAAACAG 59.479 36.000 0.00 0.00 44.19 3.16
563 596 3.082698 TCAGACAATGTGCAAAACAGC 57.917 42.857 0.00 0.00 43.64 4.40
564 597 2.129607 CAGACAATGTGCAAAACAGCC 58.870 47.619 0.00 0.00 43.64 4.85
565 598 2.034124 AGACAATGTGCAAAACAGCCT 58.966 42.857 0.00 0.00 43.64 4.58
566 599 3.004629 CAGACAATGTGCAAAACAGCCTA 59.995 43.478 0.00 0.00 43.64 3.93
567 600 3.828451 AGACAATGTGCAAAACAGCCTAT 59.172 39.130 0.00 0.00 43.64 2.57
568 601 4.281688 AGACAATGTGCAAAACAGCCTATT 59.718 37.500 0.00 0.00 43.64 1.73
569 602 4.959723 ACAATGTGCAAAACAGCCTATTT 58.040 34.783 0.00 0.00 43.64 1.40
570 603 5.367302 ACAATGTGCAAAACAGCCTATTTT 58.633 33.333 0.00 0.00 43.64 1.82
571 604 5.236911 ACAATGTGCAAAACAGCCTATTTTG 59.763 36.000 3.83 3.83 45.68 2.44
572 605 4.662468 TGTGCAAAACAGCCTATTTTGA 57.338 36.364 12.19 0.00 45.75 2.69
573 606 4.619973 TGTGCAAAACAGCCTATTTTGAG 58.380 39.130 12.19 0.00 45.75 3.02
574 607 3.429881 GTGCAAAACAGCCTATTTTGAGC 59.570 43.478 12.19 0.00 45.75 4.26
575 608 3.321682 TGCAAAACAGCCTATTTTGAGCT 59.678 39.130 12.19 0.00 45.75 4.09
581 614 3.988976 AGCCTATTTTGAGCTGTCTGA 57.011 42.857 0.00 0.00 34.99 3.27
582 615 4.292186 AGCCTATTTTGAGCTGTCTGAA 57.708 40.909 0.00 0.00 34.99 3.02
583 616 4.655963 AGCCTATTTTGAGCTGTCTGAAA 58.344 39.130 0.00 0.00 34.99 2.69
584 617 4.699257 AGCCTATTTTGAGCTGTCTGAAAG 59.301 41.667 0.00 0.00 34.99 2.62
585 618 4.142513 GCCTATTTTGAGCTGTCTGAAAGG 60.143 45.833 0.00 0.00 27.62 3.11
586 619 5.248640 CCTATTTTGAGCTGTCTGAAAGGA 58.751 41.667 0.00 0.00 27.62 3.36
587 620 5.123027 CCTATTTTGAGCTGTCTGAAAGGAC 59.877 44.000 0.00 0.00 36.81 3.85
588 621 3.845781 TTTGAGCTGTCTGAAAGGACT 57.154 42.857 0.00 0.00 37.16 3.85
589 622 3.845781 TTGAGCTGTCTGAAAGGACTT 57.154 42.857 0.00 0.00 37.16 3.01
590 623 4.955811 TTGAGCTGTCTGAAAGGACTTA 57.044 40.909 0.00 0.00 37.16 2.24
591 624 4.258702 TGAGCTGTCTGAAAGGACTTAC 57.741 45.455 0.00 0.00 37.16 2.34
592 625 3.641436 TGAGCTGTCTGAAAGGACTTACA 59.359 43.478 0.00 0.00 37.16 2.41
593 626 4.100963 TGAGCTGTCTGAAAGGACTTACAA 59.899 41.667 0.00 0.00 37.16 2.41
594 627 5.036117 AGCTGTCTGAAAGGACTTACAAA 57.964 39.130 0.00 0.00 37.16 2.83
595 628 5.437060 AGCTGTCTGAAAGGACTTACAAAA 58.563 37.500 0.00 0.00 37.16 2.44
596 629 5.529060 AGCTGTCTGAAAGGACTTACAAAAG 59.471 40.000 0.00 0.00 37.16 2.27
598 631 6.677781 TGTCTGAAAGGACTTACAAAAGTG 57.322 37.500 0.00 0.00 46.09 3.16
599 632 6.411376 TGTCTGAAAGGACTTACAAAAGTGA 58.589 36.000 0.00 0.00 46.09 3.41
600 633 6.882140 TGTCTGAAAGGACTTACAAAAGTGAA 59.118 34.615 0.00 0.00 46.09 3.18
601 634 7.148306 TGTCTGAAAGGACTTACAAAAGTGAAC 60.148 37.037 0.00 0.00 46.09 3.18
602 635 6.036735 TCTGAAAGGACTTACAAAAGTGAACG 59.963 38.462 0.00 0.00 46.09 3.95
603 636 5.065474 TGAAAGGACTTACAAAAGTGAACGG 59.935 40.000 0.00 0.00 46.09 4.44
604 637 4.411256 AGGACTTACAAAAGTGAACGGA 57.589 40.909 0.00 0.00 46.09 4.69
605 638 4.773013 AGGACTTACAAAAGTGAACGGAA 58.227 39.130 0.00 0.00 46.09 4.30
606 639 4.814771 AGGACTTACAAAAGTGAACGGAAG 59.185 41.667 0.00 0.00 46.09 3.46
607 640 4.024302 GGACTTACAAAAGTGAACGGAAGG 60.024 45.833 0.00 0.00 46.09 3.46
608 641 4.773013 ACTTACAAAAGTGAACGGAAGGA 58.227 39.130 0.00 0.00 44.40 3.36
609 642 4.814771 ACTTACAAAAGTGAACGGAAGGAG 59.185 41.667 0.00 0.00 44.40 3.69
610 643 3.277142 ACAAAAGTGAACGGAAGGAGT 57.723 42.857 0.00 0.00 0.00 3.85
611 644 4.411256 ACAAAAGTGAACGGAAGGAGTA 57.589 40.909 0.00 0.00 0.00 2.59
612 645 4.377897 ACAAAAGTGAACGGAAGGAGTAG 58.622 43.478 0.00 0.00 0.00 2.57
613 646 4.141779 ACAAAAGTGAACGGAAGGAGTAGT 60.142 41.667 0.00 0.00 0.00 2.73
614 647 4.684484 AAAGTGAACGGAAGGAGTAGTT 57.316 40.909 0.00 0.00 0.00 2.24
615 648 5.796424 AAAGTGAACGGAAGGAGTAGTTA 57.204 39.130 0.00 0.00 0.00 2.24
656 689 3.983494 CGGCCCGATCGATGAGCT 61.983 66.667 18.66 0.00 0.00 4.09
701 738 3.952535 TGCTTTGTTTTTCTCTTCGCTC 58.047 40.909 0.00 0.00 0.00 5.03
717 754 1.162800 GCTCTTGTCCATGGCGATCC 61.163 60.000 6.96 0.00 0.00 3.36
718 755 0.467384 CTCTTGTCCATGGCGATCCT 59.533 55.000 6.96 0.00 0.00 3.24
753 800 2.103538 GCCACATCGCCATTGCTG 59.896 61.111 0.00 0.00 34.43 4.41
770 817 4.875544 TGCTGGCTAATTAAACTAAGCG 57.124 40.909 0.00 0.00 35.79 4.68
787 843 1.066587 CGGAGTGGTAGCTAGCTGC 59.933 63.158 27.68 25.34 43.29 5.25
833 896 3.126225 GCTGCTGCTGCTGTCCTC 61.126 66.667 22.10 3.77 39.81 3.71
834 897 2.663796 CTGCTGCTGCTGTCCTCT 59.336 61.111 17.00 0.00 40.48 3.69
835 898 1.895966 CTGCTGCTGCTGTCCTCTA 59.104 57.895 17.00 0.00 40.48 2.43
836 899 0.248565 CTGCTGCTGCTGTCCTCTAA 59.751 55.000 17.00 0.00 40.48 2.10
837 900 0.036952 TGCTGCTGCTGTCCTCTAAC 60.037 55.000 17.00 0.00 40.48 2.34
838 901 0.742635 GCTGCTGCTGTCCTCTAACC 60.743 60.000 8.53 0.00 36.03 2.85
895 958 0.964860 TTTCCATGCATCACCCACCG 60.965 55.000 0.00 0.00 0.00 4.94
906 969 0.395312 CACCCACCGTCAACTTACCT 59.605 55.000 0.00 0.00 0.00 3.08
907 970 1.619827 CACCCACCGTCAACTTACCTA 59.380 52.381 0.00 0.00 0.00 3.08
908 971 2.235402 CACCCACCGTCAACTTACCTAT 59.765 50.000 0.00 0.00 0.00 2.57
909 972 2.908351 ACCCACCGTCAACTTACCTATT 59.092 45.455 0.00 0.00 0.00 1.73
963 1041 4.675303 CCCACCCCACCCCTCTCA 62.675 72.222 0.00 0.00 0.00 3.27
979 1065 2.113139 CACACACCACCTGACCCC 59.887 66.667 0.00 0.00 0.00 4.95
1745 2225 7.995289 TCATTTCTCTTTTTCTGTAAAGTGCA 58.005 30.769 0.00 0.00 36.67 4.57
1749 2229 8.500753 TTCTCTTTTTCTGTAAAGTGCACTAA 57.499 30.769 22.01 8.91 36.67 2.24
1750 2230 8.142994 TCTCTTTTTCTGTAAAGTGCACTAAG 57.857 34.615 22.01 15.97 36.67 2.18
1751 2231 7.769044 TCTCTTTTTCTGTAAAGTGCACTAAGT 59.231 33.333 22.01 11.23 36.67 2.24
1752 2232 8.951787 TCTTTTTCTGTAAAGTGCACTAAGTA 57.048 30.769 22.01 10.16 36.67 2.24
1753 2233 8.823818 TCTTTTTCTGTAAAGTGCACTAAGTAC 58.176 33.333 22.01 21.00 36.67 2.73
1754 2234 6.758593 TTTCTGTAAAGTGCACTAAGTACG 57.241 37.500 22.01 16.57 37.96 3.67
1755 2235 4.801891 TCTGTAAAGTGCACTAAGTACGG 58.198 43.478 22.01 23.84 37.96 4.02
1756 2236 4.520111 TCTGTAAAGTGCACTAAGTACGGA 59.480 41.667 27.10 27.10 37.96 4.69
1757 2237 5.009911 TCTGTAAAGTGCACTAAGTACGGAA 59.990 40.000 27.92 18.49 37.96 4.30
1758 2238 5.599732 TGTAAAGTGCACTAAGTACGGAAA 58.400 37.500 22.01 4.64 37.96 3.13
1759 2239 6.047870 TGTAAAGTGCACTAAGTACGGAAAA 58.952 36.000 22.01 4.30 37.96 2.29
1760 2240 5.413969 AAAGTGCACTAAGTACGGAAAAC 57.586 39.130 22.01 0.00 37.96 2.43
1761 2241 4.332428 AGTGCACTAAGTACGGAAAACT 57.668 40.909 20.16 0.00 37.96 2.66
1762 2242 4.304939 AGTGCACTAAGTACGGAAAACTC 58.695 43.478 20.16 0.00 37.96 3.01
1763 2243 4.053295 GTGCACTAAGTACGGAAAACTCA 58.947 43.478 10.32 0.00 0.00 3.41
1764 2244 4.508861 GTGCACTAAGTACGGAAAACTCAA 59.491 41.667 10.32 0.00 0.00 3.02
1765 2245 5.006941 GTGCACTAAGTACGGAAAACTCAAA 59.993 40.000 10.32 0.00 0.00 2.69
1766 2246 5.585445 TGCACTAAGTACGGAAAACTCAAAA 59.415 36.000 0.00 0.00 0.00 2.44
1767 2247 5.905733 GCACTAAGTACGGAAAACTCAAAAC 59.094 40.000 0.00 0.00 0.00 2.43
1768 2248 6.124759 CACTAAGTACGGAAAACTCAAAACG 58.875 40.000 0.00 0.00 0.00 3.60
1769 2249 4.541085 AAGTACGGAAAACTCAAAACGG 57.459 40.909 0.00 0.00 0.00 4.44
1770 2250 3.534554 AGTACGGAAAACTCAAAACGGT 58.465 40.909 0.00 0.00 0.00 4.83
1771 2251 2.836479 ACGGAAAACTCAAAACGGTG 57.164 45.000 0.00 0.00 0.00 4.94
1772 2252 1.202211 ACGGAAAACTCAAAACGGTGC 60.202 47.619 0.00 0.00 0.00 5.01
1773 2253 1.847818 GGAAAACTCAAAACGGTGCC 58.152 50.000 0.00 0.00 0.00 5.01
1774 2254 1.537348 GGAAAACTCAAAACGGTGCCC 60.537 52.381 0.00 0.00 0.00 5.36
1785 2265 4.864334 GGTGCCCGGGCTCATCTG 62.864 72.222 43.34 6.35 42.51 2.90
1788 2268 4.925861 GCCCGGGCTCATCTGCTC 62.926 72.222 38.76 4.71 38.26 4.26
1789 2269 4.247380 CCCGGGCTCATCTGCTCC 62.247 72.222 8.08 0.00 0.00 4.70
1790 2270 4.247380 CCGGGCTCATCTGCTCCC 62.247 72.222 0.00 0.00 35.42 4.30
1791 2271 3.160047 CGGGCTCATCTGCTCCCT 61.160 66.667 0.00 0.00 36.61 4.20
1792 2272 2.828145 GGGCTCATCTGCTCCCTC 59.172 66.667 0.00 0.00 35.87 4.30
1793 2273 1.765657 GGGCTCATCTGCTCCCTCT 60.766 63.158 0.00 0.00 35.87 3.69
1794 2274 1.747774 GGCTCATCTGCTCCCTCTC 59.252 63.158 0.00 0.00 0.00 3.20
1795 2275 1.047596 GGCTCATCTGCTCCCTCTCA 61.048 60.000 0.00 0.00 0.00 3.27
1796 2276 0.390124 GCTCATCTGCTCCCTCTCAG 59.610 60.000 0.00 0.00 0.00 3.35
1797 2277 0.390124 CTCATCTGCTCCCTCTCAGC 59.610 60.000 0.00 0.00 37.40 4.26
1798 2278 0.325016 TCATCTGCTCCCTCTCAGCA 60.325 55.000 0.00 0.00 44.80 4.41
1799 2279 0.540454 CATCTGCTCCCTCTCAGCAA 59.460 55.000 0.00 0.00 46.22 3.91
1800 2280 1.065636 CATCTGCTCCCTCTCAGCAAA 60.066 52.381 0.00 0.00 46.22 3.68
1801 2281 1.059098 TCTGCTCCCTCTCAGCAAAA 58.941 50.000 0.00 0.00 46.22 2.44
1802 2282 1.421268 TCTGCTCCCTCTCAGCAAAAA 59.579 47.619 0.00 0.00 46.22 1.94
1869 2349 6.489127 TTTGTGGTGGTAGATAATTTGACG 57.511 37.500 0.00 0.00 0.00 4.35
1870 2350 3.936453 TGTGGTGGTAGATAATTTGACGC 59.064 43.478 0.00 0.00 0.00 5.19
1871 2351 3.936453 GTGGTGGTAGATAATTTGACGCA 59.064 43.478 0.00 0.00 0.00 5.24
1872 2352 4.574828 GTGGTGGTAGATAATTTGACGCAT 59.425 41.667 0.00 0.00 0.00 4.73
1873 2353 4.574421 TGGTGGTAGATAATTTGACGCATG 59.426 41.667 0.00 0.00 0.00 4.06
1874 2354 4.814234 GGTGGTAGATAATTTGACGCATGA 59.186 41.667 0.00 0.00 0.00 3.07
1875 2355 5.050091 GGTGGTAGATAATTTGACGCATGAG 60.050 44.000 0.00 0.00 0.00 2.90
1876 2356 5.050091 GTGGTAGATAATTTGACGCATGAGG 60.050 44.000 0.00 0.00 0.00 3.86
1877 2357 5.057149 GGTAGATAATTTGACGCATGAGGT 58.943 41.667 0.00 0.00 0.00 3.85
1878 2358 5.050091 GGTAGATAATTTGACGCATGAGGTG 60.050 44.000 0.00 0.00 0.00 4.00
1887 2367 2.676121 CATGAGGTGCGCCCCAAA 60.676 61.111 12.68 0.00 34.57 3.28
1888 2368 2.117206 ATGAGGTGCGCCCCAAAA 59.883 55.556 12.68 0.00 34.57 2.44
1889 2369 1.305213 ATGAGGTGCGCCCCAAAAT 60.305 52.632 12.68 0.00 34.57 1.82
1890 2370 0.904394 ATGAGGTGCGCCCCAAAATT 60.904 50.000 12.68 0.00 34.57 1.82
1891 2371 1.215382 GAGGTGCGCCCCAAAATTC 59.785 57.895 12.68 0.00 34.57 2.17
1892 2372 1.531739 GAGGTGCGCCCCAAAATTCA 61.532 55.000 12.68 0.00 34.57 2.57
1893 2373 1.118356 AGGTGCGCCCCAAAATTCAA 61.118 50.000 12.68 0.00 34.57 2.69
1894 2374 0.948623 GGTGCGCCCCAAAATTCAAC 60.949 55.000 3.18 0.00 0.00 3.18
1895 2375 0.033366 GTGCGCCCCAAAATTCAACT 59.967 50.000 4.18 0.00 0.00 3.16
1896 2376 0.316841 TGCGCCCCAAAATTCAACTC 59.683 50.000 4.18 0.00 0.00 3.01
1897 2377 0.316841 GCGCCCCAAAATTCAACTCA 59.683 50.000 0.00 0.00 0.00 3.41
1898 2378 1.066929 GCGCCCCAAAATTCAACTCAT 60.067 47.619 0.00 0.00 0.00 2.90
1899 2379 2.612721 GCGCCCCAAAATTCAACTCATT 60.613 45.455 0.00 0.00 0.00 2.57
1900 2380 3.663025 CGCCCCAAAATTCAACTCATTT 58.337 40.909 0.00 0.00 0.00 2.32
1901 2381 3.432933 CGCCCCAAAATTCAACTCATTTG 59.567 43.478 0.00 0.00 36.42 2.32
1909 2389 8.014322 CAAAATTCAACTCATTTGGACATCTG 57.986 34.615 0.00 0.00 35.69 2.90
1910 2390 7.528996 AAATTCAACTCATTTGGACATCTGA 57.471 32.000 0.00 0.00 35.69 3.27
1911 2391 6.754702 ATTCAACTCATTTGGACATCTGAG 57.245 37.500 9.00 9.00 40.71 3.35
1912 2392 4.005650 TCAACTCATTTGGACATCTGAGC 58.994 43.478 10.00 0.00 38.94 4.26
1913 2393 3.708403 ACTCATTTGGACATCTGAGCA 57.292 42.857 10.00 0.00 38.94 4.26
1914 2394 4.025040 ACTCATTTGGACATCTGAGCAA 57.975 40.909 10.00 0.00 38.94 3.91
1915 2395 3.755378 ACTCATTTGGACATCTGAGCAAC 59.245 43.478 10.00 0.00 38.94 4.17
1916 2396 4.008330 CTCATTTGGACATCTGAGCAACT 58.992 43.478 0.00 0.00 0.00 3.16
1917 2397 4.005650 TCATTTGGACATCTGAGCAACTC 58.994 43.478 0.00 0.00 0.00 3.01
1918 2398 3.777106 TTTGGACATCTGAGCAACTCT 57.223 42.857 0.00 0.00 0.00 3.24
1919 2399 3.325293 TTGGACATCTGAGCAACTCTC 57.675 47.619 0.00 0.00 42.23 3.20
1920 2400 1.203287 TGGACATCTGAGCAACTCTCG 59.797 52.381 0.00 0.00 44.86 4.04
1922 2402 0.108424 ACATCTGAGCAACTCTCGGC 60.108 55.000 0.00 0.00 45.76 5.54
1923 2403 0.108472 CATCTGAGCAACTCTCGGCA 60.108 55.000 0.00 0.00 45.76 5.69
1924 2404 0.610174 ATCTGAGCAACTCTCGGCAA 59.390 50.000 0.00 0.00 45.76 4.52
1925 2405 0.392706 TCTGAGCAACTCTCGGCAAA 59.607 50.000 0.00 0.00 45.76 3.68
1926 2406 1.202639 TCTGAGCAACTCTCGGCAAAA 60.203 47.619 0.00 0.00 45.76 2.44
1927 2407 1.603802 CTGAGCAACTCTCGGCAAAAA 59.396 47.619 0.00 0.00 44.86 1.94
1947 2427 5.592104 AAAAGACAAATCGGGTCAAAACT 57.408 34.783 0.00 0.00 37.74 2.66
1948 2428 4.568152 AAGACAAATCGGGTCAAAACTG 57.432 40.909 0.00 0.00 37.74 3.16
1949 2429 3.551846 AGACAAATCGGGTCAAAACTGT 58.448 40.909 0.00 0.00 37.74 3.55
1950 2430 3.315191 AGACAAATCGGGTCAAAACTGTG 59.685 43.478 0.00 0.00 37.74 3.66
1951 2431 2.223711 ACAAATCGGGTCAAAACTGTGC 60.224 45.455 0.00 0.00 0.00 4.57
1952 2432 1.686355 AATCGGGTCAAAACTGTGCA 58.314 45.000 0.00 0.00 0.00 4.57
1953 2433 1.909700 ATCGGGTCAAAACTGTGCAT 58.090 45.000 0.00 0.00 0.00 3.96
1954 2434 0.950836 TCGGGTCAAAACTGTGCATG 59.049 50.000 0.00 0.00 0.00 4.06
1955 2435 0.950836 CGGGTCAAAACTGTGCATGA 59.049 50.000 0.00 0.00 0.00 3.07
1956 2436 1.336440 CGGGTCAAAACTGTGCATGAA 59.664 47.619 0.00 0.00 0.00 2.57
1957 2437 2.742774 GGGTCAAAACTGTGCATGAAC 58.257 47.619 0.00 0.00 0.00 3.18
1958 2438 2.100584 GGGTCAAAACTGTGCATGAACA 59.899 45.455 6.30 6.30 31.09 3.18
1990 2470 7.654022 TTTTTACAGACCCTGATTTTGTCTT 57.346 32.000 0.45 0.00 37.25 3.01
1991 2471 7.654022 TTTTACAGACCCTGATTTTGTCTTT 57.346 32.000 0.45 0.00 37.25 2.52
1992 2472 7.654022 TTTACAGACCCTGATTTTGTCTTTT 57.346 32.000 0.45 0.00 37.25 2.27
1993 2473 7.654022 TTACAGACCCTGATTTTGTCTTTTT 57.346 32.000 0.45 0.00 37.25 1.94
2007 2487 4.481195 TTTTTGCCGAGAGCTGCT 57.519 50.000 0.00 0.00 44.23 4.24
2008 2488 2.247790 TTTTTGCCGAGAGCTGCTC 58.752 52.632 21.72 21.72 44.23 4.26
2009 2489 0.534877 TTTTTGCCGAGAGCTGCTCA 60.535 50.000 29.49 8.15 44.15 4.26
2010 2490 0.952497 TTTTGCCGAGAGCTGCTCAG 60.952 55.000 29.49 21.79 44.15 3.35
2011 2491 1.820010 TTTGCCGAGAGCTGCTCAGA 61.820 55.000 29.49 7.15 44.15 3.27
2012 2492 1.611474 TTGCCGAGAGCTGCTCAGAT 61.611 55.000 29.49 10.97 44.15 2.90
2013 2493 1.592131 GCCGAGAGCTGCTCAGATG 60.592 63.158 29.49 16.14 44.15 2.90
2014 2494 1.592131 CCGAGAGCTGCTCAGATGC 60.592 63.158 29.49 12.92 44.15 3.91
2015 2495 1.438399 CGAGAGCTGCTCAGATGCT 59.562 57.895 29.49 9.44 44.15 3.79
2019 2499 3.950869 AGCTGCTCAGATGCTCAAA 57.049 47.368 0.00 0.00 30.41 2.69
2020 2500 2.421751 AGCTGCTCAGATGCTCAAAT 57.578 45.000 0.00 0.00 30.41 2.32
2021 2501 2.017782 AGCTGCTCAGATGCTCAAATG 58.982 47.619 0.00 0.00 30.41 2.32
2022 2502 2.014857 GCTGCTCAGATGCTCAAATGA 58.985 47.619 0.29 0.00 0.00 2.57
2023 2503 2.032302 GCTGCTCAGATGCTCAAATGAG 59.968 50.000 6.05 6.05 44.75 2.90
2037 2517 4.309099 TCAAATGAGCTGATTTTTGGTGC 58.691 39.130 8.55 0.00 31.57 5.01
2038 2518 2.642139 ATGAGCTGATTTTTGGTGCG 57.358 45.000 0.00 0.00 0.00 5.34
2039 2519 0.039256 TGAGCTGATTTTTGGTGCGC 60.039 50.000 0.00 0.00 0.00 6.09
2040 2520 0.039256 GAGCTGATTTTTGGTGCGCA 60.039 50.000 5.66 5.66 0.00 6.09
2041 2521 0.318955 AGCTGATTTTTGGTGCGCAC 60.319 50.000 32.15 32.15 0.00 5.34
2055 2535 3.253955 GCACCTCACGCGTCAAAT 58.746 55.556 9.86 0.00 0.00 2.32
2056 2536 1.574428 GCACCTCACGCGTCAAATT 59.426 52.632 9.86 0.00 0.00 1.82
2057 2537 0.793861 GCACCTCACGCGTCAAATTA 59.206 50.000 9.86 0.00 0.00 1.40
2058 2538 1.396996 GCACCTCACGCGTCAAATTAT 59.603 47.619 9.86 0.00 0.00 1.28
2059 2539 2.536928 GCACCTCACGCGTCAAATTATC 60.537 50.000 9.86 0.00 0.00 1.75
2060 2540 2.930040 CACCTCACGCGTCAAATTATCT 59.070 45.455 9.86 0.00 0.00 1.98
2061 2541 4.109766 CACCTCACGCGTCAAATTATCTA 58.890 43.478 9.86 0.00 0.00 1.98
2062 2542 4.026804 CACCTCACGCGTCAAATTATCTAC 60.027 45.833 9.86 0.00 0.00 2.59
2063 2543 3.489785 CCTCACGCGTCAAATTATCTACC 59.510 47.826 9.86 0.00 0.00 3.18
2064 2544 4.109766 CTCACGCGTCAAATTATCTACCA 58.890 43.478 9.86 0.00 0.00 3.25
2065 2545 3.861113 TCACGCGTCAAATTATCTACCAC 59.139 43.478 9.86 0.00 0.00 4.16
2066 2546 3.000925 CACGCGTCAAATTATCTACCACC 59.999 47.826 9.86 0.00 0.00 4.61
2067 2547 3.191669 CGCGTCAAATTATCTACCACCA 58.808 45.455 0.00 0.00 0.00 4.17
2068 2548 3.000925 CGCGTCAAATTATCTACCACCAC 59.999 47.826 0.00 0.00 0.00 4.16
2069 2549 3.936453 GCGTCAAATTATCTACCACCACA 59.064 43.478 0.00 0.00 0.00 4.17
2070 2550 4.393680 GCGTCAAATTATCTACCACCACAA 59.606 41.667 0.00 0.00 0.00 3.33
2071 2551 5.106475 GCGTCAAATTATCTACCACCACAAA 60.106 40.000 0.00 0.00 0.00 2.83
2072 2552 6.568844 GCGTCAAATTATCTACCACCACAAAA 60.569 38.462 0.00 0.00 0.00 2.44
2073 2553 7.364200 CGTCAAATTATCTACCACCACAAAAA 58.636 34.615 0.00 0.00 0.00 1.94
2135 2615 1.681538 TTTTTCTAAGCGTGGGTGCA 58.318 45.000 0.00 0.00 37.31 4.57
2136 2616 1.234821 TTTTCTAAGCGTGGGTGCAG 58.765 50.000 0.00 0.00 37.31 4.41
2137 2617 0.394938 TTTCTAAGCGTGGGTGCAGA 59.605 50.000 0.00 0.00 37.31 4.26
2138 2618 0.613260 TTCTAAGCGTGGGTGCAGAT 59.387 50.000 0.00 0.00 37.31 2.90
2139 2619 0.108186 TCTAAGCGTGGGTGCAGATG 60.108 55.000 0.00 0.00 37.31 2.90
2140 2620 0.108186 CTAAGCGTGGGTGCAGATGA 60.108 55.000 0.00 0.00 37.31 2.92
2141 2621 0.108186 TAAGCGTGGGTGCAGATGAG 60.108 55.000 0.00 0.00 37.31 2.90
2142 2622 3.503363 GCGTGGGTGCAGATGAGC 61.503 66.667 0.00 0.00 34.15 4.26
2143 2623 2.821366 CGTGGGTGCAGATGAGCC 60.821 66.667 0.00 0.00 0.00 4.70
2144 2624 2.439156 GTGGGTGCAGATGAGCCC 60.439 66.667 0.81 0.81 41.42 5.19
2145 2625 4.100084 TGGGTGCAGATGAGCCCG 62.100 66.667 3.57 0.00 43.89 6.13
2146 2626 4.864334 GGGTGCAGATGAGCCCGG 62.864 72.222 0.00 0.00 0.00 5.73
2147 2627 4.864334 GGTGCAGATGAGCCCGGG 62.864 72.222 19.09 19.09 0.00 5.73
2148 2628 4.101448 GTGCAGATGAGCCCGGGT 62.101 66.667 24.63 9.10 0.00 5.28
2149 2629 4.100084 TGCAGATGAGCCCGGGTG 62.100 66.667 24.63 12.63 0.00 4.61
2151 2631 4.100084 CAGATGAGCCCGGGTGCA 62.100 66.667 24.63 20.72 0.00 4.57
2152 2632 3.790437 AGATGAGCCCGGGTGCAG 61.790 66.667 24.63 0.00 0.00 4.41
2153 2633 3.785859 GATGAGCCCGGGTGCAGA 61.786 66.667 24.63 1.93 0.00 4.26
2154 2634 3.092511 ATGAGCCCGGGTGCAGAT 61.093 61.111 24.63 4.52 0.00 2.90
2155 2635 2.615227 GATGAGCCCGGGTGCAGATT 62.615 60.000 24.63 5.68 0.00 2.40
2156 2636 1.344953 ATGAGCCCGGGTGCAGATTA 61.345 55.000 24.63 0.35 0.00 1.75
2157 2637 1.227674 GAGCCCGGGTGCAGATTAG 60.228 63.158 24.63 0.00 0.00 1.73
2158 2638 2.902343 GCCCGGGTGCAGATTAGC 60.902 66.667 24.63 0.00 0.00 3.09
2159 2639 2.203209 CCCGGGTGCAGATTAGCC 60.203 66.667 14.18 0.00 0.00 3.93
2162 2642 2.124736 GGGTGCAGATTAGCCGCA 60.125 61.111 0.00 0.00 0.00 5.69
2165 2645 4.521075 TGCAGATTAGCCGCACTC 57.479 55.556 0.00 0.00 0.00 3.51
2166 2646 1.596408 TGCAGATTAGCCGCACTCA 59.404 52.632 0.00 0.00 0.00 3.41
2167 2647 0.740868 TGCAGATTAGCCGCACTCAC 60.741 55.000 0.00 0.00 0.00 3.51
2168 2648 0.460987 GCAGATTAGCCGCACTCACT 60.461 55.000 0.00 0.00 0.00 3.41
2169 2649 1.202417 GCAGATTAGCCGCACTCACTA 60.202 52.381 0.00 0.00 0.00 2.74
2170 2650 2.738643 GCAGATTAGCCGCACTCACTAA 60.739 50.000 0.00 0.00 0.00 2.24
2171 2651 3.119291 CAGATTAGCCGCACTCACTAAG 58.881 50.000 0.00 0.00 29.96 2.18
2275 2846 6.581388 AAAGAAGATCCTGGGACATCAATA 57.419 37.500 0.00 0.00 38.20 1.90
2316 2890 6.245408 TGCTCCACTCCATTTTTAACTGTAT 58.755 36.000 0.00 0.00 0.00 2.29
2437 3012 3.663176 CAGGCGGCACACAGGTTG 61.663 66.667 13.08 0.00 0.00 3.77
2438 3013 4.189580 AGGCGGCACACAGGTTGT 62.190 61.111 13.08 0.00 39.97 3.32
2439 3014 2.281208 GGCGGCACACAGGTTGTA 60.281 61.111 3.07 0.00 35.67 2.41
2440 3015 2.325082 GGCGGCACACAGGTTGTAG 61.325 63.158 3.07 0.00 35.67 2.74
2503 3079 0.249868 TCTTTGTGCACTGGACCTCG 60.250 55.000 19.41 0.00 0.00 4.63
2538 3114 3.891366 ACTTGCCAAGCTAAACAACAGAT 59.109 39.130 3.88 0.00 0.00 2.90
2540 3116 3.485394 TGCCAAGCTAAACAACAGATGA 58.515 40.909 0.00 0.00 0.00 2.92
2546 3122 5.772825 AGCTAAACAACAGATGAAGCAAA 57.227 34.783 0.00 0.00 36.19 3.68
2547 3123 5.766222 AGCTAAACAACAGATGAAGCAAAG 58.234 37.500 0.00 0.00 36.19 2.77
2549 3125 3.375782 AACAACAGATGAAGCAAAGCC 57.624 42.857 0.00 0.00 0.00 4.35
2550 3126 2.309613 ACAACAGATGAAGCAAAGCCA 58.690 42.857 0.00 0.00 0.00 4.75
2551 3127 2.035066 ACAACAGATGAAGCAAAGCCAC 59.965 45.455 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.941263 CACTCGGTAAATCATCCAAAGGAA 59.059 41.667 0.00 0.00 34.34 3.36
1 2 4.224147 TCACTCGGTAAATCATCCAAAGGA 59.776 41.667 0.00 0.00 35.55 3.36
2 3 4.513442 TCACTCGGTAAATCATCCAAAGG 58.487 43.478 0.00 0.00 0.00 3.11
4 5 4.808895 CGATCACTCGGTAAATCATCCAAA 59.191 41.667 0.00 0.00 41.27 3.28
5 6 4.098807 TCGATCACTCGGTAAATCATCCAA 59.901 41.667 0.00 0.00 45.10 3.53
6 7 3.634910 TCGATCACTCGGTAAATCATCCA 59.365 43.478 0.00 0.00 45.10 3.41
7 8 4.238761 TCGATCACTCGGTAAATCATCC 57.761 45.455 0.00 0.00 45.10 3.51
9 10 4.215613 TCGATCGATCACTCGGTAAATCAT 59.784 41.667 24.40 0.00 45.10 2.45
10 11 3.562557 TCGATCGATCACTCGGTAAATCA 59.437 43.478 24.40 0.00 45.10 2.57
11 12 3.907194 GTCGATCGATCACTCGGTAAATC 59.093 47.826 22.50 0.00 45.10 2.17
12 13 3.304525 GGTCGATCGATCACTCGGTAAAT 60.305 47.826 23.20 0.00 45.10 1.40
13 14 2.032550 GGTCGATCGATCACTCGGTAAA 59.967 50.000 23.20 0.00 45.10 2.01
14 15 1.600957 GGTCGATCGATCACTCGGTAA 59.399 52.381 23.20 0.00 45.10 2.85
15 16 1.224075 GGTCGATCGATCACTCGGTA 58.776 55.000 23.20 0.00 45.10 4.02
16 17 1.773054 CGGTCGATCGATCACTCGGT 61.773 60.000 26.79 0.00 45.10 4.69
17 18 1.082692 CGGTCGATCGATCACTCGG 60.083 63.158 26.79 11.72 45.10 4.63
18 19 0.027716 AACGGTCGATCGATCACTCG 59.972 55.000 27.34 22.70 46.41 4.18
19 20 2.190325 AAACGGTCGATCGATCACTC 57.810 50.000 27.34 11.33 0.00 3.51
20 21 2.223433 GGTAAACGGTCGATCGATCACT 60.223 50.000 27.34 11.01 0.00 3.41
21 22 2.114825 GGTAAACGGTCGATCGATCAC 58.885 52.381 27.34 16.95 0.00 3.06
22 23 1.066002 GGGTAAACGGTCGATCGATCA 59.934 52.381 27.34 5.60 0.00 2.92
23 24 1.066002 TGGGTAAACGGTCGATCGATC 59.934 52.381 27.34 20.46 0.00 3.69
24 25 1.105457 TGGGTAAACGGTCGATCGAT 58.895 50.000 27.34 10.86 0.00 3.59
25 26 1.066002 GATGGGTAAACGGTCGATCGA 59.934 52.381 27.34 15.15 0.00 3.59
26 27 1.484356 GATGGGTAAACGGTCGATCG 58.516 55.000 18.18 18.18 0.00 3.69
27 28 1.137479 TGGATGGGTAAACGGTCGATC 59.863 52.381 0.00 0.00 0.00 3.69
28 29 1.196911 TGGATGGGTAAACGGTCGAT 58.803 50.000 0.00 0.00 0.00 3.59
29 30 1.196911 ATGGATGGGTAAACGGTCGA 58.803 50.000 0.00 0.00 0.00 4.20
30 31 2.159071 TGTATGGATGGGTAAACGGTCG 60.159 50.000 0.00 0.00 0.00 4.79
31 32 3.547054 TGTATGGATGGGTAAACGGTC 57.453 47.619 0.00 0.00 0.00 4.79
32 33 3.181448 GGATGTATGGATGGGTAAACGGT 60.181 47.826 0.00 0.00 0.00 4.83
33 34 3.072476 AGGATGTATGGATGGGTAAACGG 59.928 47.826 0.00 0.00 0.00 4.44
34 35 4.351874 AGGATGTATGGATGGGTAAACG 57.648 45.455 0.00 0.00 0.00 3.60
35 36 5.070685 GGAAGGATGTATGGATGGGTAAAC 58.929 45.833 0.00 0.00 0.00 2.01
36 37 4.729370 TGGAAGGATGTATGGATGGGTAAA 59.271 41.667 0.00 0.00 0.00 2.01
37 38 4.311613 TGGAAGGATGTATGGATGGGTAA 58.688 43.478 0.00 0.00 0.00 2.85
38 39 3.948126 TGGAAGGATGTATGGATGGGTA 58.052 45.455 0.00 0.00 0.00 3.69
39 40 2.787956 TGGAAGGATGTATGGATGGGT 58.212 47.619 0.00 0.00 0.00 4.51
40 41 3.490348 GTTGGAAGGATGTATGGATGGG 58.510 50.000 0.00 0.00 0.00 4.00
41 42 3.141398 CGTTGGAAGGATGTATGGATGG 58.859 50.000 0.00 0.00 0.00 3.51
42 43 3.561310 CACGTTGGAAGGATGTATGGATG 59.439 47.826 0.00 0.00 0.00 3.51
43 44 3.199946 ACACGTTGGAAGGATGTATGGAT 59.800 43.478 0.00 0.00 0.00 3.41
44 45 2.569853 ACACGTTGGAAGGATGTATGGA 59.430 45.455 0.00 0.00 0.00 3.41
45 46 2.677836 CACACGTTGGAAGGATGTATGG 59.322 50.000 0.00 0.00 0.00 2.74
46 47 2.095853 GCACACGTTGGAAGGATGTATG 59.904 50.000 0.00 0.00 0.00 2.39
47 48 2.290008 TGCACACGTTGGAAGGATGTAT 60.290 45.455 0.00 0.00 0.00 2.29
48 49 1.070914 TGCACACGTTGGAAGGATGTA 59.929 47.619 0.00 0.00 0.00 2.29
49 50 0.179032 TGCACACGTTGGAAGGATGT 60.179 50.000 0.00 0.00 0.00 3.06
50 51 0.518636 CTGCACACGTTGGAAGGATG 59.481 55.000 0.00 0.00 0.00 3.51
51 52 0.108585 ACTGCACACGTTGGAAGGAT 59.891 50.000 0.00 0.00 0.00 3.24
52 53 0.813610 CACTGCACACGTTGGAAGGA 60.814 55.000 0.00 0.00 0.00 3.36
53 54 1.648720 CACTGCACACGTTGGAAGG 59.351 57.895 0.00 0.00 0.00 3.46
54 55 1.009675 GCACTGCACACGTTGGAAG 60.010 57.895 0.00 0.00 0.00 3.46
55 56 1.746991 TGCACTGCACACGTTGGAA 60.747 52.632 0.00 0.00 31.71 3.53
56 57 2.124942 TGCACTGCACACGTTGGA 60.125 55.556 0.00 0.00 31.71 3.53
65 66 1.506309 CTAGCCAAACGTGCACTGCA 61.506 55.000 16.19 0.00 35.60 4.41
66 67 1.207593 CTAGCCAAACGTGCACTGC 59.792 57.895 16.19 9.40 0.00 4.40
67 68 1.069906 GTTCTAGCCAAACGTGCACTG 60.070 52.381 16.19 11.05 0.00 3.66
68 69 1.226746 GTTCTAGCCAAACGTGCACT 58.773 50.000 16.19 0.00 0.00 4.40
69 70 0.941542 TGTTCTAGCCAAACGTGCAC 59.058 50.000 6.82 6.82 0.00 4.57
70 71 1.601903 CTTGTTCTAGCCAAACGTGCA 59.398 47.619 0.00 0.00 0.00 4.57
71 72 1.663161 GCTTGTTCTAGCCAAACGTGC 60.663 52.381 0.00 0.00 35.06 5.34
72 73 1.601903 TGCTTGTTCTAGCCAAACGTG 59.398 47.619 0.00 0.00 40.49 4.49
73 74 1.961793 TGCTTGTTCTAGCCAAACGT 58.038 45.000 4.13 0.00 40.49 3.99
74 75 2.855180 CATGCTTGTTCTAGCCAAACG 58.145 47.619 4.13 0.00 40.49 3.60
75 76 2.030007 TGCATGCTTGTTCTAGCCAAAC 60.030 45.455 20.33 0.00 40.49 2.93
76 77 2.237643 TGCATGCTTGTTCTAGCCAAA 58.762 42.857 20.33 0.00 40.49 3.28
77 78 1.908344 TGCATGCTTGTTCTAGCCAA 58.092 45.000 20.33 0.00 40.49 4.52
78 79 1.746787 CATGCATGCTTGTTCTAGCCA 59.253 47.619 22.06 0.00 40.49 4.75
79 80 2.486951 CATGCATGCTTGTTCTAGCC 57.513 50.000 22.06 0.00 40.49 3.93
97 98 1.437573 GGTCGACGAGGATCATGCA 59.562 57.895 9.92 0.00 33.17 3.96
109 110 0.798771 GTCTGTCAGCATCGGTCGAC 60.799 60.000 7.13 7.13 0.00 4.20
110 111 1.241315 TGTCTGTCAGCATCGGTCGA 61.241 55.000 0.00 0.00 0.00 4.20
111 112 0.799917 CTGTCTGTCAGCATCGGTCG 60.800 60.000 0.00 0.00 37.36 4.79
112 113 0.459237 CCTGTCTGTCAGCATCGGTC 60.459 60.000 0.00 0.00 42.38 4.79
161 162 4.747540 ATCTGAAGAGATGATCGAGTCG 57.252 45.455 6.09 6.09 37.56 4.18
171 172 5.972327 AGATGGGTTCAATCTGAAGAGAT 57.028 39.130 0.00 0.00 41.00 2.75
177 178 4.916041 AGACAAGATGGGTTCAATCTGA 57.084 40.909 0.00 0.00 0.00 3.27
193 194 5.946942 AGAGCATAAGATGAGGAAGACAA 57.053 39.130 0.00 0.00 0.00 3.18
195 196 8.900983 AATTAAGAGCATAAGATGAGGAAGAC 57.099 34.615 0.00 0.00 0.00 3.01
209 210 9.444600 TTTCCTTTCTACGTTAATTAAGAGCAT 57.555 29.630 0.00 0.00 0.00 3.79
210 211 8.836268 TTTCCTTTCTACGTTAATTAAGAGCA 57.164 30.769 0.00 0.00 0.00 4.26
211 212 9.704098 CATTTCCTTTCTACGTTAATTAAGAGC 57.296 33.333 0.00 0.00 0.00 4.09
215 216 7.148035 GGGCCATTTCCTTTCTACGTTAATTAA 60.148 37.037 4.39 0.00 0.00 1.40
217 218 5.126545 GGGCCATTTCCTTTCTACGTTAATT 59.873 40.000 4.39 0.00 0.00 1.40
219 220 4.011698 GGGCCATTTCCTTTCTACGTTAA 58.988 43.478 4.39 0.00 0.00 2.01
221 222 2.224917 TGGGCCATTTCCTTTCTACGTT 60.225 45.455 0.00 0.00 0.00 3.99
223 224 2.122783 TGGGCCATTTCCTTTCTACG 57.877 50.000 0.00 0.00 0.00 3.51
224 225 3.430790 GCATTGGGCCATTTCCTTTCTAC 60.431 47.826 7.26 0.00 36.11 2.59
230 234 1.305213 ACGCATTGGGCCATTTCCT 60.305 52.632 7.26 0.00 40.31 3.36
260 264 7.617041 ATCTTTTTCCTTCTCGATTAGTTGG 57.383 36.000 0.00 0.00 0.00 3.77
261 265 9.587772 TCTATCTTTTTCCTTCTCGATTAGTTG 57.412 33.333 0.00 0.00 0.00 3.16
270 274 9.332502 GAGGGTTTATCTATCTTTTTCCTTCTC 57.667 37.037 0.00 0.00 0.00 2.87
284 293 6.942976 ACGAACAATTCAGAGGGTTTATCTA 58.057 36.000 0.00 0.00 0.00 1.98
285 294 5.805728 ACGAACAATTCAGAGGGTTTATCT 58.194 37.500 0.00 0.00 0.00 1.98
286 295 5.220416 CGACGAACAATTCAGAGGGTTTATC 60.220 44.000 0.00 0.00 0.00 1.75
287 296 4.630069 CGACGAACAATTCAGAGGGTTTAT 59.370 41.667 0.00 0.00 0.00 1.40
288 297 3.991773 CGACGAACAATTCAGAGGGTTTA 59.008 43.478 0.00 0.00 0.00 2.01
292 301 1.726791 CACGACGAACAATTCAGAGGG 59.273 52.381 0.00 0.00 0.00 4.30
309 318 1.218875 TTGCTGAGTTGTACGCCACG 61.219 55.000 0.00 0.00 0.00 4.94
313 322 2.795121 CTCATTGCTGAGTTGTACGC 57.205 50.000 0.00 0.00 43.35 4.42
341 356 0.250901 AATTCAGTCCGGCAGTGCTT 60.251 50.000 16.11 0.00 0.00 3.91
375 408 3.664223 GACGACCACGACCTCTCGC 62.664 68.421 0.00 0.00 44.33 5.03
376 409 2.479650 GACGACCACGACCTCTCG 59.520 66.667 0.00 0.00 46.06 4.04
377 410 2.479650 CGACGACCACGACCTCTC 59.520 66.667 0.00 0.00 42.66 3.20
378 411 3.735029 GCGACGACCACGACCTCT 61.735 66.667 0.00 0.00 42.66 3.69
379 412 4.773117 GGCGACGACCACGACCTC 62.773 72.222 0.00 0.00 42.66 3.85
401 434 3.776781 TATGTGGACGGGCACGGG 61.777 66.667 15.46 0.00 46.48 5.28
402 435 2.510691 GTATGTGGACGGGCACGG 60.511 66.667 15.46 0.00 46.48 4.94
404 437 1.108776 TAGAGTATGTGGACGGGCAC 58.891 55.000 0.00 0.00 0.00 5.01
405 438 1.754803 CTTAGAGTATGTGGACGGGCA 59.245 52.381 0.00 0.00 0.00 5.36
468 501 1.751927 GAGCATGGTCTTGGCAGGG 60.752 63.158 17.59 0.00 0.00 4.45
472 505 0.321919 TGACAGAGCATGGTCTTGGC 60.322 55.000 24.44 20.57 35.11 4.52
484 517 8.629158 GGGAGTAGCATATATAAGATGACAGAG 58.371 40.741 2.88 0.00 0.00 3.35
493 526 8.247562 GTGAACAGAGGGAGTAGCATATATAAG 58.752 40.741 0.00 0.00 0.00 1.73
498 531 4.551671 AGTGAACAGAGGGAGTAGCATAT 58.448 43.478 0.00 0.00 0.00 1.78
499 532 3.982516 AGTGAACAGAGGGAGTAGCATA 58.017 45.455 0.00 0.00 0.00 3.14
500 533 2.826488 AGTGAACAGAGGGAGTAGCAT 58.174 47.619 0.00 0.00 0.00 3.79
501 534 2.310779 AGTGAACAGAGGGAGTAGCA 57.689 50.000 0.00 0.00 0.00 3.49
502 535 3.686916 AAAGTGAACAGAGGGAGTAGC 57.313 47.619 0.00 0.00 0.00 3.58
503 536 8.750298 TCTTATAAAAGTGAACAGAGGGAGTAG 58.250 37.037 0.00 0.00 34.13 2.57
504 537 8.529476 GTCTTATAAAAGTGAACAGAGGGAGTA 58.471 37.037 0.00 0.00 34.13 2.59
505 538 7.387643 GTCTTATAAAAGTGAACAGAGGGAGT 58.612 38.462 0.00 0.00 34.13 3.85
506 539 6.819146 GGTCTTATAAAAGTGAACAGAGGGAG 59.181 42.308 0.00 0.00 34.13 4.30
507 540 6.500751 AGGTCTTATAAAAGTGAACAGAGGGA 59.499 38.462 0.00 0.00 34.13 4.20
508 541 6.712276 AGGTCTTATAAAAGTGAACAGAGGG 58.288 40.000 0.00 0.00 34.13 4.30
509 542 6.531948 CGAGGTCTTATAAAAGTGAACAGAGG 59.468 42.308 0.00 0.00 34.13 3.69
510 543 7.313646 TCGAGGTCTTATAAAAGTGAACAGAG 58.686 38.462 0.00 0.00 34.13 3.35
511 544 7.223260 TCGAGGTCTTATAAAAGTGAACAGA 57.777 36.000 0.00 0.00 34.13 3.41
512 545 7.813148 TCTTCGAGGTCTTATAAAAGTGAACAG 59.187 37.037 0.00 0.00 34.13 3.16
513 546 7.597743 GTCTTCGAGGTCTTATAAAAGTGAACA 59.402 37.037 0.00 0.00 34.13 3.18
514 547 7.597743 TGTCTTCGAGGTCTTATAAAAGTGAAC 59.402 37.037 0.00 0.00 34.13 3.18
515 548 7.663827 TGTCTTCGAGGTCTTATAAAAGTGAA 58.336 34.615 0.00 0.00 34.13 3.18
516 549 7.223260 TGTCTTCGAGGTCTTATAAAAGTGA 57.777 36.000 0.00 0.00 34.13 3.41
517 550 8.480643 AATGTCTTCGAGGTCTTATAAAAGTG 57.519 34.615 0.00 0.00 34.13 3.16
518 551 9.152595 GAAATGTCTTCGAGGTCTTATAAAAGT 57.847 33.333 0.00 0.00 34.13 2.66
519 552 9.151471 TGAAATGTCTTCGAGGTCTTATAAAAG 57.849 33.333 0.00 0.00 0.00 2.27
520 553 9.151471 CTGAAATGTCTTCGAGGTCTTATAAAA 57.849 33.333 0.00 0.00 0.00 1.52
521 554 8.528643 TCTGAAATGTCTTCGAGGTCTTATAAA 58.471 33.333 0.00 0.00 0.00 1.40
522 555 7.974501 GTCTGAAATGTCTTCGAGGTCTTATAA 59.025 37.037 0.00 0.00 0.00 0.98
523 556 7.122204 TGTCTGAAATGTCTTCGAGGTCTTATA 59.878 37.037 0.00 0.00 0.00 0.98
524 557 6.071334 TGTCTGAAATGTCTTCGAGGTCTTAT 60.071 38.462 0.00 0.00 0.00 1.73
525 558 5.243060 TGTCTGAAATGTCTTCGAGGTCTTA 59.757 40.000 0.00 0.00 0.00 2.10
526 559 4.039245 TGTCTGAAATGTCTTCGAGGTCTT 59.961 41.667 0.00 0.00 0.00 3.01
527 560 3.574396 TGTCTGAAATGTCTTCGAGGTCT 59.426 43.478 0.00 0.00 0.00 3.85
528 561 3.914312 TGTCTGAAATGTCTTCGAGGTC 58.086 45.455 0.00 0.00 0.00 3.85
529 562 4.336889 TTGTCTGAAATGTCTTCGAGGT 57.663 40.909 0.00 0.00 0.00 3.85
530 563 4.692625 ACATTGTCTGAAATGTCTTCGAGG 59.307 41.667 10.41 0.00 45.47 4.63
531 564 5.615708 CACATTGTCTGAAATGTCTTCGAG 58.384 41.667 12.25 2.19 45.47 4.04
532 565 4.083855 GCACATTGTCTGAAATGTCTTCGA 60.084 41.667 12.25 0.00 45.47 3.71
533 566 4.153986 GCACATTGTCTGAAATGTCTTCG 58.846 43.478 12.25 6.12 45.47 3.79
534 567 5.112220 TGCACATTGTCTGAAATGTCTTC 57.888 39.130 12.25 7.82 45.47 2.87
535 568 5.518848 TTGCACATTGTCTGAAATGTCTT 57.481 34.783 12.25 0.00 45.47 3.01
536 569 5.518848 TTTGCACATTGTCTGAAATGTCT 57.481 34.783 12.25 0.00 45.47 3.41
537 570 5.519566 TGTTTTGCACATTGTCTGAAATGTC 59.480 36.000 12.25 9.51 45.47 3.06
539 572 5.557514 GCTGTTTTGCACATTGTCTGAAATG 60.558 40.000 0.00 9.50 42.21 2.32
540 573 4.508861 GCTGTTTTGCACATTGTCTGAAAT 59.491 37.500 0.00 0.00 33.76 2.17
541 574 3.864583 GCTGTTTTGCACATTGTCTGAAA 59.135 39.130 0.00 0.00 33.76 2.69
542 575 3.446799 GCTGTTTTGCACATTGTCTGAA 58.553 40.909 0.00 0.00 33.76 3.02
543 576 2.223782 GGCTGTTTTGCACATTGTCTGA 60.224 45.455 0.00 0.00 33.76 3.27
544 577 2.129607 GGCTGTTTTGCACATTGTCTG 58.870 47.619 0.00 0.00 33.76 3.51
545 578 2.034124 AGGCTGTTTTGCACATTGTCT 58.966 42.857 0.00 0.00 33.76 3.41
546 579 2.514205 AGGCTGTTTTGCACATTGTC 57.486 45.000 0.00 0.00 33.76 3.18
547 580 4.605640 AATAGGCTGTTTTGCACATTGT 57.394 36.364 0.00 0.00 33.76 2.71
548 581 5.466058 TCAAAATAGGCTGTTTTGCACATTG 59.534 36.000 32.24 16.60 43.04 2.82
549 582 5.609423 TCAAAATAGGCTGTTTTGCACATT 58.391 33.333 32.24 6.77 43.04 2.71
550 583 5.212532 TCAAAATAGGCTGTTTTGCACAT 57.787 34.783 32.24 7.40 43.04 3.21
551 584 4.619973 CTCAAAATAGGCTGTTTTGCACA 58.380 39.130 32.24 20.43 43.04 4.57
552 585 3.429881 GCTCAAAATAGGCTGTTTTGCAC 59.570 43.478 32.24 24.89 43.04 4.57
553 586 3.321682 AGCTCAAAATAGGCTGTTTTGCA 59.678 39.130 32.24 23.09 43.04 4.08
554 587 3.676646 CAGCTCAAAATAGGCTGTTTTGC 59.323 43.478 32.24 25.11 45.59 3.68
561 594 3.988976 TCAGACAGCTCAAAATAGGCT 57.011 42.857 0.00 0.00 36.70 4.58
562 595 4.142513 CCTTTCAGACAGCTCAAAATAGGC 60.143 45.833 0.00 0.00 0.00 3.93
563 596 5.123027 GTCCTTTCAGACAGCTCAAAATAGG 59.877 44.000 0.00 0.00 36.73 2.57
564 597 5.936956 AGTCCTTTCAGACAGCTCAAAATAG 59.063 40.000 0.00 0.00 39.34 1.73
565 598 5.869579 AGTCCTTTCAGACAGCTCAAAATA 58.130 37.500 0.00 0.00 39.34 1.40
566 599 4.723309 AGTCCTTTCAGACAGCTCAAAAT 58.277 39.130 0.00 0.00 39.34 1.82
567 600 4.156455 AGTCCTTTCAGACAGCTCAAAA 57.844 40.909 0.00 0.00 39.34 2.44
568 601 3.845781 AGTCCTTTCAGACAGCTCAAA 57.154 42.857 0.00 0.00 39.34 2.69
569 602 3.845781 AAGTCCTTTCAGACAGCTCAA 57.154 42.857 0.00 0.00 39.34 3.02
570 603 3.641436 TGTAAGTCCTTTCAGACAGCTCA 59.359 43.478 0.00 0.00 39.34 4.26
571 604 4.258702 TGTAAGTCCTTTCAGACAGCTC 57.741 45.455 0.00 0.00 39.34 4.09
572 605 4.689612 TTGTAAGTCCTTTCAGACAGCT 57.310 40.909 0.00 0.00 39.34 4.24
573 606 5.297029 ACTTTTGTAAGTCCTTTCAGACAGC 59.703 40.000 0.00 0.00 40.60 4.40
574 607 6.538742 TCACTTTTGTAAGTCCTTTCAGACAG 59.461 38.462 0.00 0.00 42.67 3.51
575 608 6.411376 TCACTTTTGTAAGTCCTTTCAGACA 58.589 36.000 0.00 0.00 42.67 3.41
576 609 6.920569 TCACTTTTGTAAGTCCTTTCAGAC 57.079 37.500 0.00 0.00 42.67 3.51
577 610 6.036735 CGTTCACTTTTGTAAGTCCTTTCAGA 59.963 38.462 0.00 0.00 42.67 3.27
578 611 6.192360 CGTTCACTTTTGTAAGTCCTTTCAG 58.808 40.000 0.00 0.00 42.67 3.02
579 612 5.065474 CCGTTCACTTTTGTAAGTCCTTTCA 59.935 40.000 0.00 0.00 42.67 2.69
580 613 5.295045 TCCGTTCACTTTTGTAAGTCCTTTC 59.705 40.000 0.00 0.00 42.67 2.62
581 614 5.187687 TCCGTTCACTTTTGTAAGTCCTTT 58.812 37.500 0.00 0.00 42.67 3.11
582 615 4.773013 TCCGTTCACTTTTGTAAGTCCTT 58.227 39.130 0.00 0.00 42.67 3.36
583 616 4.411256 TCCGTTCACTTTTGTAAGTCCT 57.589 40.909 0.00 0.00 42.67 3.85
584 617 4.024302 CCTTCCGTTCACTTTTGTAAGTCC 60.024 45.833 0.00 0.00 42.67 3.85
585 618 4.812626 TCCTTCCGTTCACTTTTGTAAGTC 59.187 41.667 0.00 0.00 42.67 3.01
586 619 4.773013 TCCTTCCGTTCACTTTTGTAAGT 58.227 39.130 0.00 0.00 45.40 2.24
587 620 4.814771 ACTCCTTCCGTTCACTTTTGTAAG 59.185 41.667 0.00 0.00 37.40 2.34
588 621 4.773013 ACTCCTTCCGTTCACTTTTGTAA 58.227 39.130 0.00 0.00 0.00 2.41
589 622 4.411256 ACTCCTTCCGTTCACTTTTGTA 57.589 40.909 0.00 0.00 0.00 2.41
590 623 3.277142 ACTCCTTCCGTTCACTTTTGT 57.723 42.857 0.00 0.00 0.00 2.83
591 624 4.377897 ACTACTCCTTCCGTTCACTTTTG 58.622 43.478 0.00 0.00 0.00 2.44
592 625 4.684484 ACTACTCCTTCCGTTCACTTTT 57.316 40.909 0.00 0.00 0.00 2.27
593 626 4.684484 AACTACTCCTTCCGTTCACTTT 57.316 40.909 0.00 0.00 0.00 2.66
594 627 5.997384 ATAACTACTCCTTCCGTTCACTT 57.003 39.130 0.00 0.00 0.00 3.16
595 628 7.657023 ATTATAACTACTCCTTCCGTTCACT 57.343 36.000 0.00 0.00 0.00 3.41
596 629 9.978044 ATAATTATAACTACTCCTTCCGTTCAC 57.022 33.333 0.00 0.00 0.00 3.18
611 644 9.457436 CCGGTGGGCTTAATTATAATTATAACT 57.543 33.333 18.02 11.42 31.57 2.24
642 675 2.087646 TGATCTAGCTCATCGATCGGG 58.912 52.381 16.41 8.33 37.07 5.14
643 676 3.839051 TTGATCTAGCTCATCGATCGG 57.161 47.619 16.41 0.00 37.07 4.18
644 677 3.917380 GGTTTGATCTAGCTCATCGATCG 59.083 47.826 9.36 9.36 37.07 3.69
645 678 4.241681 GGGTTTGATCTAGCTCATCGATC 58.758 47.826 0.00 0.00 35.33 3.69
646 679 3.305676 CGGGTTTGATCTAGCTCATCGAT 60.306 47.826 0.00 0.00 0.00 3.59
647 680 2.034685 CGGGTTTGATCTAGCTCATCGA 59.965 50.000 0.00 0.00 0.00 3.59
648 681 2.034685 TCGGGTTTGATCTAGCTCATCG 59.965 50.000 0.00 1.00 0.00 3.84
649 682 3.735237 TCGGGTTTGATCTAGCTCATC 57.265 47.619 0.00 0.00 0.00 2.92
650 683 3.452627 AGTTCGGGTTTGATCTAGCTCAT 59.547 43.478 0.00 0.00 0.00 2.90
651 684 2.832129 AGTTCGGGTTTGATCTAGCTCA 59.168 45.455 0.00 0.00 0.00 4.26
652 685 3.131400 AGAGTTCGGGTTTGATCTAGCTC 59.869 47.826 0.00 0.00 0.00 4.09
653 686 3.100671 AGAGTTCGGGTTTGATCTAGCT 58.899 45.455 0.00 0.00 0.00 3.32
654 687 3.528597 AGAGTTCGGGTTTGATCTAGC 57.471 47.619 0.00 0.00 0.00 3.42
655 688 6.803154 AAAAAGAGTTCGGGTTTGATCTAG 57.197 37.500 0.00 0.00 0.00 2.43
701 738 2.997899 GAGGATCGCCATGGACAAG 58.002 57.895 18.40 3.07 36.29 3.16
753 800 4.272748 CCACTCCGCTTAGTTTAATTAGCC 59.727 45.833 0.00 0.00 0.00 3.93
767 814 1.076632 AGCTAGCTACCACTCCGCT 60.077 57.895 17.69 0.00 37.77 5.52
770 817 1.066587 CGCAGCTAGCTACCACTCC 59.933 63.158 18.86 0.00 42.61 3.85
787 843 2.664851 TCGCTGAACTTGTGGCCG 60.665 61.111 0.00 0.00 0.00 6.13
856 919 5.578336 GGAAAAGGACAAGCAAATGATTAGC 59.422 40.000 0.00 0.00 0.00 3.09
895 958 4.996788 TCGGAGGAATAGGTAAGTTGAC 57.003 45.455 0.00 0.00 0.00 3.18
906 969 5.421056 GTGTGGGTATATGATCGGAGGAATA 59.579 44.000 0.00 0.00 0.00 1.75
907 970 4.223032 GTGTGGGTATATGATCGGAGGAAT 59.777 45.833 0.00 0.00 0.00 3.01
908 971 3.576982 GTGTGGGTATATGATCGGAGGAA 59.423 47.826 0.00 0.00 0.00 3.36
909 972 3.162666 GTGTGGGTATATGATCGGAGGA 58.837 50.000 0.00 0.00 0.00 3.71
963 1041 3.175710 GGGGGTCAGGTGGTGTGT 61.176 66.667 0.00 0.00 0.00 3.72
979 1065 3.045634 TGAGAGAGGTAGAGAGAGAGGG 58.954 54.545 0.00 0.00 0.00 4.30
1722 2201 8.000780 AGTGCACTTTACAGAAAAAGAGAAAT 57.999 30.769 15.25 0.00 38.50 2.17
1726 2205 7.920738 ACTTAGTGCACTTTACAGAAAAAGAG 58.079 34.615 27.06 1.99 38.50 2.85
1745 2225 5.234972 CCGTTTTGAGTTTTCCGTACTTAGT 59.765 40.000 0.00 0.00 0.00 2.24
1749 2229 3.310501 CACCGTTTTGAGTTTTCCGTACT 59.689 43.478 0.00 0.00 0.00 2.73
1750 2230 3.610495 CACCGTTTTGAGTTTTCCGTAC 58.390 45.455 0.00 0.00 0.00 3.67
1751 2231 2.031930 GCACCGTTTTGAGTTTTCCGTA 59.968 45.455 0.00 0.00 0.00 4.02
1752 2232 1.202211 GCACCGTTTTGAGTTTTCCGT 60.202 47.619 0.00 0.00 0.00 4.69
1753 2233 1.472990 GCACCGTTTTGAGTTTTCCG 58.527 50.000 0.00 0.00 0.00 4.30
1754 2234 1.537348 GGGCACCGTTTTGAGTTTTCC 60.537 52.381 0.00 0.00 40.86 3.13
1755 2235 1.847818 GGGCACCGTTTTGAGTTTTC 58.152 50.000 0.00 0.00 40.86 2.29
1771 2251 4.925861 GAGCAGATGAGCCCGGGC 62.926 72.222 39.29 39.29 42.33 6.13
1772 2252 4.247380 GGAGCAGATGAGCCCGGG 62.247 72.222 19.09 19.09 34.23 5.73
1773 2253 4.247380 GGGAGCAGATGAGCCCGG 62.247 72.222 0.00 0.00 34.23 5.73
1774 2254 3.160047 AGGGAGCAGATGAGCCCG 61.160 66.667 0.00 0.00 45.40 6.13
1775 2255 1.757423 GAGAGGGAGCAGATGAGCCC 61.757 65.000 0.00 0.00 41.00 5.19
1776 2256 1.047596 TGAGAGGGAGCAGATGAGCC 61.048 60.000 0.00 0.00 34.23 4.70
1777 2257 0.390124 CTGAGAGGGAGCAGATGAGC 59.610 60.000 0.00 0.00 34.06 4.26
1778 2258 0.390124 GCTGAGAGGGAGCAGATGAG 59.610 60.000 0.00 0.00 36.40 2.90
1779 2259 0.325016 TGCTGAGAGGGAGCAGATGA 60.325 55.000 0.00 0.00 41.56 2.92
1780 2260 0.540454 TTGCTGAGAGGGAGCAGATG 59.460 55.000 0.00 0.00 46.81 2.90
1781 2261 1.283347 TTTGCTGAGAGGGAGCAGAT 58.717 50.000 0.00 0.00 46.81 2.90
1782 2262 1.059098 TTTTGCTGAGAGGGAGCAGA 58.941 50.000 0.00 0.00 46.81 4.26
1783 2263 1.901591 TTTTTGCTGAGAGGGAGCAG 58.098 50.000 0.00 0.00 46.81 4.24
1844 2324 7.364200 CGTCAAATTATCTACCACCACAAAAA 58.636 34.615 0.00 0.00 0.00 1.94
1845 2325 6.568844 GCGTCAAATTATCTACCACCACAAAA 60.569 38.462 0.00 0.00 0.00 2.44
1846 2326 5.106475 GCGTCAAATTATCTACCACCACAAA 60.106 40.000 0.00 0.00 0.00 2.83
1847 2327 4.393680 GCGTCAAATTATCTACCACCACAA 59.606 41.667 0.00 0.00 0.00 3.33
1848 2328 3.936453 GCGTCAAATTATCTACCACCACA 59.064 43.478 0.00 0.00 0.00 4.17
1849 2329 3.936453 TGCGTCAAATTATCTACCACCAC 59.064 43.478 0.00 0.00 0.00 4.16
1850 2330 4.209307 TGCGTCAAATTATCTACCACCA 57.791 40.909 0.00 0.00 0.00 4.17
1851 2331 4.814234 TCATGCGTCAAATTATCTACCACC 59.186 41.667 0.00 0.00 0.00 4.61
1852 2332 5.050091 CCTCATGCGTCAAATTATCTACCAC 60.050 44.000 0.00 0.00 0.00 4.16
1853 2333 5.056480 CCTCATGCGTCAAATTATCTACCA 58.944 41.667 0.00 0.00 0.00 3.25
1854 2334 5.050091 CACCTCATGCGTCAAATTATCTACC 60.050 44.000 0.00 0.00 0.00 3.18
1855 2335 5.559035 GCACCTCATGCGTCAAATTATCTAC 60.559 44.000 0.00 0.00 46.55 2.59
1856 2336 4.511454 GCACCTCATGCGTCAAATTATCTA 59.489 41.667 0.00 0.00 46.55 1.98
1857 2337 3.313526 GCACCTCATGCGTCAAATTATCT 59.686 43.478 0.00 0.00 46.55 1.98
1858 2338 3.621794 GCACCTCATGCGTCAAATTATC 58.378 45.455 0.00 0.00 46.55 1.75
1859 2339 3.698029 GCACCTCATGCGTCAAATTAT 57.302 42.857 0.00 0.00 46.55 1.28
1873 2353 1.215382 GAATTTTGGGGCGCACCTC 59.785 57.895 32.18 15.41 40.03 3.85
1874 2354 1.118356 TTGAATTTTGGGGCGCACCT 61.118 50.000 32.18 9.19 40.03 4.00
1875 2355 0.948623 GTTGAATTTTGGGGCGCACC 60.949 55.000 25.59 25.59 39.11 5.01
1876 2356 0.033366 AGTTGAATTTTGGGGCGCAC 59.967 50.000 10.83 4.83 0.00 5.34
1877 2357 0.316841 GAGTTGAATTTTGGGGCGCA 59.683 50.000 10.83 0.00 0.00 6.09
1878 2358 0.316841 TGAGTTGAATTTTGGGGCGC 59.683 50.000 0.00 0.00 0.00 6.53
1879 2359 3.317603 AATGAGTTGAATTTTGGGGCG 57.682 42.857 0.00 0.00 0.00 6.13
1880 2360 3.752747 CCAAATGAGTTGAATTTTGGGGC 59.247 43.478 0.00 0.00 42.74 5.80
1881 2361 4.996758 GTCCAAATGAGTTGAATTTTGGGG 59.003 41.667 12.01 0.00 45.23 4.96
1882 2362 5.609423 TGTCCAAATGAGTTGAATTTTGGG 58.391 37.500 12.01 0.00 45.23 4.12
1883 2363 7.117236 CAGATGTCCAAATGAGTTGAATTTTGG 59.883 37.037 6.89 6.89 46.09 3.28
1884 2364 7.868922 TCAGATGTCCAAATGAGTTGAATTTTG 59.131 33.333 0.00 0.00 39.87 2.44
1885 2365 7.954835 TCAGATGTCCAAATGAGTTGAATTTT 58.045 30.769 0.00 0.00 39.87 1.82
1886 2366 7.528996 TCAGATGTCCAAATGAGTTGAATTT 57.471 32.000 0.00 0.00 39.87 1.82
1887 2367 6.349944 GCTCAGATGTCCAAATGAGTTGAATT 60.350 38.462 0.00 0.00 41.00 2.17
1888 2368 5.125097 GCTCAGATGTCCAAATGAGTTGAAT 59.875 40.000 0.00 0.00 41.00 2.57
1889 2369 4.456911 GCTCAGATGTCCAAATGAGTTGAA 59.543 41.667 0.00 0.00 41.00 2.69
1890 2370 4.005650 GCTCAGATGTCCAAATGAGTTGA 58.994 43.478 0.00 0.00 41.00 3.18
1891 2371 3.754850 TGCTCAGATGTCCAAATGAGTTG 59.245 43.478 11.46 0.00 41.00 3.16
1892 2372 4.025040 TGCTCAGATGTCCAAATGAGTT 57.975 40.909 11.46 0.00 41.00 3.01
1893 2373 3.708403 TGCTCAGATGTCCAAATGAGT 57.292 42.857 11.46 0.00 41.00 3.41
1894 2374 4.008330 AGTTGCTCAGATGTCCAAATGAG 58.992 43.478 7.42 7.42 41.68 2.90
1895 2375 4.005650 GAGTTGCTCAGATGTCCAAATGA 58.994 43.478 0.00 0.00 0.00 2.57
1896 2376 4.008330 AGAGTTGCTCAGATGTCCAAATG 58.992 43.478 0.00 0.00 32.06 2.32
1897 2377 4.260170 GAGAGTTGCTCAGATGTCCAAAT 58.740 43.478 0.00 0.00 43.38 2.32
1898 2378 3.668447 GAGAGTTGCTCAGATGTCCAAA 58.332 45.455 0.00 0.00 43.38 3.28
1899 2379 2.353109 CGAGAGTTGCTCAGATGTCCAA 60.353 50.000 0.00 0.00 44.15 3.53
1900 2380 1.203287 CGAGAGTTGCTCAGATGTCCA 59.797 52.381 0.00 0.00 44.15 4.02
1901 2381 1.470632 CCGAGAGTTGCTCAGATGTCC 60.471 57.143 0.00 0.00 44.15 4.02
1902 2382 1.919918 CCGAGAGTTGCTCAGATGTC 58.080 55.000 0.00 0.00 44.15 3.06
1903 2383 0.108424 GCCGAGAGTTGCTCAGATGT 60.108 55.000 0.00 0.00 44.15 3.06
1904 2384 0.108472 TGCCGAGAGTTGCTCAGATG 60.108 55.000 0.00 0.00 44.15 2.90
1905 2385 0.610174 TTGCCGAGAGTTGCTCAGAT 59.390 50.000 0.00 0.00 44.15 2.90
1906 2386 0.392706 TTTGCCGAGAGTTGCTCAGA 59.607 50.000 0.00 0.00 44.15 3.27
1907 2387 1.229428 TTTTGCCGAGAGTTGCTCAG 58.771 50.000 0.00 0.00 44.15 3.35
1908 2388 1.674359 TTTTTGCCGAGAGTTGCTCA 58.326 45.000 0.00 0.00 44.15 4.26
1924 2404 5.810074 CAGTTTTGACCCGATTTGTCTTTTT 59.190 36.000 0.00 0.00 33.83 1.94
1925 2405 5.105513 ACAGTTTTGACCCGATTTGTCTTTT 60.106 36.000 0.00 0.00 33.83 2.27
1926 2406 4.401202 ACAGTTTTGACCCGATTTGTCTTT 59.599 37.500 0.00 0.00 33.83 2.52
1927 2407 3.951680 ACAGTTTTGACCCGATTTGTCTT 59.048 39.130 0.00 0.00 33.83 3.01
1928 2408 3.315191 CACAGTTTTGACCCGATTTGTCT 59.685 43.478 0.00 0.00 33.83 3.41
1929 2409 3.628017 CACAGTTTTGACCCGATTTGTC 58.372 45.455 0.00 0.00 0.00 3.18
1930 2410 2.223711 GCACAGTTTTGACCCGATTTGT 60.224 45.455 0.00 0.00 0.00 2.83
1931 2411 2.223688 TGCACAGTTTTGACCCGATTTG 60.224 45.455 0.00 0.00 0.00 2.32
1932 2412 2.028130 TGCACAGTTTTGACCCGATTT 58.972 42.857 0.00 0.00 0.00 2.17
1933 2413 1.686355 TGCACAGTTTTGACCCGATT 58.314 45.000 0.00 0.00 0.00 3.34
1934 2414 1.541147 CATGCACAGTTTTGACCCGAT 59.459 47.619 0.00 0.00 0.00 4.18
1935 2415 0.950836 CATGCACAGTTTTGACCCGA 59.049 50.000 0.00 0.00 0.00 5.14
1936 2416 0.950836 TCATGCACAGTTTTGACCCG 59.049 50.000 0.00 0.00 0.00 5.28
1937 2417 2.100584 TGTTCATGCACAGTTTTGACCC 59.899 45.455 0.00 0.00 0.00 4.46
1938 2418 3.374745 CTGTTCATGCACAGTTTTGACC 58.625 45.455 16.30 0.00 39.59 4.02
1966 2446 7.654022 AAGACAAAATCAGGGTCTGTAAAAA 57.346 32.000 0.00 0.00 40.80 1.94
1967 2447 7.654022 AAAGACAAAATCAGGGTCTGTAAAA 57.346 32.000 0.00 0.00 40.80 1.52
1968 2448 7.654022 AAAAGACAAAATCAGGGTCTGTAAA 57.346 32.000 0.00 0.00 40.80 2.01
1969 2449 7.654022 AAAAAGACAAAATCAGGGTCTGTAA 57.346 32.000 0.00 0.00 40.80 2.41
1990 2470 0.534877 TGAGCAGCTCTCGGCAAAAA 60.535 50.000 23.15 0.00 44.86 1.94
1991 2471 0.952497 CTGAGCAGCTCTCGGCAAAA 60.952 55.000 23.15 0.00 44.86 2.44
1992 2472 1.375140 CTGAGCAGCTCTCGGCAAA 60.375 57.895 23.15 0.00 44.86 3.68
1993 2473 1.611474 ATCTGAGCAGCTCTCGGCAA 61.611 55.000 23.15 0.68 45.76 4.52
1994 2474 2.056815 ATCTGAGCAGCTCTCGGCA 61.057 57.895 23.15 2.15 45.76 5.69
1995 2475 1.592131 CATCTGAGCAGCTCTCGGC 60.592 63.158 23.15 0.00 45.76 5.54
1997 2477 1.438399 AGCATCTGAGCAGCTCTCG 59.562 57.895 23.15 13.93 44.86 4.04
2001 2481 2.017782 CATTTGAGCATCTGAGCAGCT 58.982 47.619 0.00 0.00 42.17 4.24
2002 2482 2.014857 TCATTTGAGCATCTGAGCAGC 58.985 47.619 0.00 0.00 36.85 5.25
2003 2483 3.953874 CTCATTTGAGCATCTGAGCAG 57.046 47.619 0.00 0.00 35.13 4.24
2014 2494 4.387862 GCACCAAAAATCAGCTCATTTGAG 59.612 41.667 0.00 3.13 44.75 3.02
2015 2495 4.309099 GCACCAAAAATCAGCTCATTTGA 58.691 39.130 0.00 0.00 35.34 2.69
2016 2496 3.122278 CGCACCAAAAATCAGCTCATTTG 59.878 43.478 0.00 0.12 33.62 2.32
2017 2497 3.319755 CGCACCAAAAATCAGCTCATTT 58.680 40.909 0.00 0.00 0.00 2.32
2018 2498 2.927871 GCGCACCAAAAATCAGCTCATT 60.928 45.455 0.30 0.00 0.00 2.57
2019 2499 1.403249 GCGCACCAAAAATCAGCTCAT 60.403 47.619 0.30 0.00 0.00 2.90
2020 2500 0.039256 GCGCACCAAAAATCAGCTCA 60.039 50.000 0.30 0.00 0.00 4.26
2021 2501 0.039256 TGCGCACCAAAAATCAGCTC 60.039 50.000 5.66 0.00 0.00 4.09
2022 2502 0.318955 GTGCGCACCAAAAATCAGCT 60.319 50.000 30.12 0.00 0.00 4.24
2023 2503 2.144362 GTGCGCACCAAAAATCAGC 58.856 52.632 30.12 0.00 0.00 4.26
2038 2518 0.793861 TAATTTGACGCGTGAGGTGC 59.206 50.000 20.70 0.06 0.00 5.01
2039 2519 2.930040 AGATAATTTGACGCGTGAGGTG 59.070 45.455 20.70 0.00 0.00 4.00
2040 2520 3.247006 AGATAATTTGACGCGTGAGGT 57.753 42.857 20.70 0.00 0.00 3.85
2041 2521 3.489785 GGTAGATAATTTGACGCGTGAGG 59.510 47.826 20.70 0.00 0.00 3.86
2042 2522 4.026804 GTGGTAGATAATTTGACGCGTGAG 60.027 45.833 20.70 0.00 0.00 3.51
2043 2523 3.861113 GTGGTAGATAATTTGACGCGTGA 59.139 43.478 20.70 4.74 0.00 4.35
2044 2524 3.000925 GGTGGTAGATAATTTGACGCGTG 59.999 47.826 20.70 0.00 0.00 5.34
2045 2525 3.192466 GGTGGTAGATAATTTGACGCGT 58.808 45.455 13.85 13.85 0.00 6.01
2046 2526 3.000925 GTGGTGGTAGATAATTTGACGCG 59.999 47.826 3.53 3.53 0.00 6.01
2047 2527 3.936453 TGTGGTGGTAGATAATTTGACGC 59.064 43.478 0.00 0.00 0.00 5.19
2048 2528 6.489127 TTTGTGGTGGTAGATAATTTGACG 57.511 37.500 0.00 0.00 0.00 4.35
2116 2596 1.606668 CTGCACCCACGCTTAGAAAAA 59.393 47.619 0.00 0.00 0.00 1.94
2117 2597 1.202710 TCTGCACCCACGCTTAGAAAA 60.203 47.619 0.00 0.00 0.00 2.29
2118 2598 0.394938 TCTGCACCCACGCTTAGAAA 59.605 50.000 0.00 0.00 0.00 2.52
2119 2599 0.613260 ATCTGCACCCACGCTTAGAA 59.387 50.000 0.00 0.00 0.00 2.10
2120 2600 0.108186 CATCTGCACCCACGCTTAGA 60.108 55.000 0.00 0.00 0.00 2.10
2121 2601 0.108186 TCATCTGCACCCACGCTTAG 60.108 55.000 0.00 0.00 0.00 2.18
2122 2602 0.108186 CTCATCTGCACCCACGCTTA 60.108 55.000 0.00 0.00 0.00 3.09
2123 2603 1.376424 CTCATCTGCACCCACGCTT 60.376 57.895 0.00 0.00 0.00 4.68
2124 2604 2.267006 CTCATCTGCACCCACGCT 59.733 61.111 0.00 0.00 0.00 5.07
2125 2605 3.503363 GCTCATCTGCACCCACGC 61.503 66.667 0.00 0.00 0.00 5.34
2126 2606 2.821366 GGCTCATCTGCACCCACG 60.821 66.667 0.00 0.00 34.04 4.94
2127 2607 2.439156 GGGCTCATCTGCACCCAC 60.439 66.667 2.99 0.00 42.33 4.61
2128 2608 4.100084 CGGGCTCATCTGCACCCA 62.100 66.667 8.42 0.00 42.97 4.51
2129 2609 4.864334 CCGGGCTCATCTGCACCC 62.864 72.222 0.00 0.00 39.12 4.61
2130 2610 4.864334 CCCGGGCTCATCTGCACC 62.864 72.222 8.08 0.00 31.60 5.01
2131 2611 4.101448 ACCCGGGCTCATCTGCAC 62.101 66.667 24.08 0.00 34.04 4.57
2132 2612 4.100084 CACCCGGGCTCATCTGCA 62.100 66.667 24.08 0.00 34.04 4.41
2134 2614 4.100084 TGCACCCGGGCTCATCTG 62.100 66.667 24.08 11.82 34.04 2.90
2135 2615 3.790437 CTGCACCCGGGCTCATCT 61.790 66.667 24.08 0.00 34.04 2.90
2136 2616 2.615227 AATCTGCACCCGGGCTCATC 62.615 60.000 24.08 5.69 34.04 2.92
2137 2617 1.344953 TAATCTGCACCCGGGCTCAT 61.345 55.000 24.08 6.40 34.04 2.90
2138 2618 1.971505 CTAATCTGCACCCGGGCTCA 61.972 60.000 24.08 17.97 34.04 4.26
2139 2619 1.227674 CTAATCTGCACCCGGGCTC 60.228 63.158 24.08 13.62 34.04 4.70
2140 2620 2.911143 CTAATCTGCACCCGGGCT 59.089 61.111 24.08 4.79 34.04 5.19
2141 2621 2.902343 GCTAATCTGCACCCGGGC 60.902 66.667 24.08 8.36 0.00 6.13
2142 2622 2.203209 GGCTAATCTGCACCCGGG 60.203 66.667 22.25 22.25 34.04 5.73
2143 2623 2.588877 CGGCTAATCTGCACCCGG 60.589 66.667 0.00 0.00 35.54 5.73
2144 2624 3.272334 GCGGCTAATCTGCACCCG 61.272 66.667 0.00 0.00 46.35 5.28
2150 2630 2.871182 TAGTGAGTGCGGCTAATCTG 57.129 50.000 0.00 0.00 0.00 2.90
2151 2631 2.761208 ACTTAGTGAGTGCGGCTAATCT 59.239 45.455 0.00 0.00 37.17 2.40
2152 2632 3.166489 ACTTAGTGAGTGCGGCTAATC 57.834 47.619 0.00 0.00 37.17 1.75
2153 2633 3.446161 TGTACTTAGTGAGTGCGGCTAAT 59.554 43.478 0.00 0.00 43.16 1.73
2154 2634 2.821378 TGTACTTAGTGAGTGCGGCTAA 59.179 45.455 0.00 0.00 43.16 3.09
2155 2635 2.439409 TGTACTTAGTGAGTGCGGCTA 58.561 47.619 0.00 0.00 43.16 3.93
2156 2636 1.254026 TGTACTTAGTGAGTGCGGCT 58.746 50.000 0.00 0.00 43.16 5.52
2157 2637 2.295253 ATGTACTTAGTGAGTGCGGC 57.705 50.000 0.00 0.00 43.16 6.53
2158 2638 4.111375 AGAATGTACTTAGTGAGTGCGG 57.889 45.455 0.00 0.00 43.16 5.69
2159 2639 6.299604 CAAAAGAATGTACTTAGTGAGTGCG 58.700 40.000 0.00 0.00 43.16 5.34
2160 2640 6.603095 CCAAAAGAATGTACTTAGTGAGTGC 58.397 40.000 0.00 0.00 39.48 4.40
2161 2641 6.348540 GGCCAAAAGAATGTACTTAGTGAGTG 60.349 42.308 0.00 0.00 39.48 3.51
2162 2642 5.705905 GGCCAAAAGAATGTACTTAGTGAGT 59.294 40.000 0.00 0.00 42.55 3.41
2163 2643 5.940470 AGGCCAAAAGAATGTACTTAGTGAG 59.060 40.000 5.01 0.00 0.00 3.51
2164 2644 5.876357 AGGCCAAAAGAATGTACTTAGTGA 58.124 37.500 5.01 0.00 0.00 3.41
2165 2645 7.336931 ACATAGGCCAAAAGAATGTACTTAGTG 59.663 37.037 5.01 0.00 0.00 2.74
2166 2646 7.402862 ACATAGGCCAAAAGAATGTACTTAGT 58.597 34.615 5.01 0.00 0.00 2.24
2167 2647 7.552687 TGACATAGGCCAAAAGAATGTACTTAG 59.447 37.037 5.01 0.00 31.19 2.18
2168 2648 7.398829 TGACATAGGCCAAAAGAATGTACTTA 58.601 34.615 5.01 0.00 31.19 2.24
2169 2649 6.245408 TGACATAGGCCAAAAGAATGTACTT 58.755 36.000 5.01 0.00 31.19 2.24
2170 2650 5.815581 TGACATAGGCCAAAAGAATGTACT 58.184 37.500 5.01 0.00 31.19 2.73
2171 2651 6.509418 TTGACATAGGCCAAAAGAATGTAC 57.491 37.500 5.01 0.00 31.19 2.90
2294 2868 9.981114 AAAAATACAGTTAAAAATGGAGTGGAG 57.019 29.630 0.00 0.00 0.00 3.86
2419 2993 4.954970 AACCTGTGTGCCGCCTGG 62.955 66.667 0.00 0.00 38.77 4.45
2437 3012 1.458588 CCAGCTCCTCCCTCCCTAC 60.459 68.421 0.00 0.00 0.00 3.18
2438 3013 1.007238 ATCCAGCTCCTCCCTCCCTA 61.007 60.000 0.00 0.00 0.00 3.53
2439 3014 2.340025 ATCCAGCTCCTCCCTCCCT 61.340 63.158 0.00 0.00 0.00 4.20
2440 3015 2.146061 CATCCAGCTCCTCCCTCCC 61.146 68.421 0.00 0.00 0.00 4.30
2476 3051 4.095483 GTCCAGTGCACAAAGATATCCTTG 59.905 45.833 21.04 11.74 34.79 3.61
2480 3056 3.873952 GAGGTCCAGTGCACAAAGATATC 59.126 47.826 21.04 10.20 0.00 1.63
2503 3079 2.101700 GCAAGTAGCATGTCCAGCC 58.898 57.895 0.00 0.00 44.79 4.85
2538 3114 0.685785 TTGTGGGTGGCTTTGCTTCA 60.686 50.000 0.00 0.00 0.00 3.02
2540 3116 1.130777 ATTTGTGGGTGGCTTTGCTT 58.869 45.000 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.