Multiple sequence alignment - TraesCS3B01G018000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G018000 chr3B 100.000 4056 0 0 1 4056 7385564 7381509 0.000000e+00 7491.0
1 TraesCS3B01G018000 chr3B 95.359 711 31 2 3346 4056 726438034 726437326 0.000000e+00 1129.0
2 TraesCS3B01G018000 chr3B 83.857 700 91 15 2363 3055 681569294 681568610 0.000000e+00 647.0
3 TraesCS3B01G018000 chr3B 78.774 212 18 20 909 1107 8492998 8493195 2.560000e-22 117.0
4 TraesCS3B01G018000 chr3B 100.000 29 0 0 1201 1229 316725123 316725151 2.000000e-03 54.7
5 TraesCS3B01G018000 chr3A 89.266 1267 87 17 2128 3352 14858298 14857039 0.000000e+00 1541.0
6 TraesCS3B01G018000 chr3A 81.161 1051 124 37 1117 2119 14859372 14858348 0.000000e+00 776.0
7 TraesCS3B01G018000 chr3A 81.090 936 145 24 2130 3055 14765784 14766697 0.000000e+00 719.0
8 TraesCS3B01G018000 chr3A 84.176 613 81 12 17 617 599993154 599992546 7.560000e-162 580.0
9 TraesCS3B01G018000 chr3A 88.152 211 13 4 843 1044 14859591 14859384 1.460000e-59 241.0
10 TraesCS3B01G018000 chr3A 86.842 152 19 1 3346 3497 26138517 26138367 6.970000e-38 169.0
11 TraesCS3B01G018000 chr3A 89.655 116 11 1 3346 3461 310726787 310726901 3.270000e-31 147.0
12 TraesCS3B01G018000 chr3A 95.000 60 3 0 2769 2828 13409220 13409161 1.200000e-15 95.3
13 TraesCS3B01G018000 chr3A 94.286 35 1 1 1201 1235 15341245 15341212 7.000000e-03 52.8
14 TraesCS3B01G018000 chr3D 85.308 1300 112 43 843 2111 6140404 6141655 0.000000e+00 1269.0
15 TraesCS3B01G018000 chr3D 90.693 967 67 6 2119 3067 6141694 6142655 0.000000e+00 1266.0
16 TraesCS3B01G018000 chr3D 80.892 942 138 26 2130 3055 6168392 6167477 0.000000e+00 704.0
17 TraesCS3B01G018000 chr3D 83.333 612 90 7 17 617 58989749 58989139 4.580000e-154 555.0
18 TraesCS3B01G018000 chr3D 83.170 612 91 8 17 617 58897053 58896443 2.130000e-152 549.0
19 TraesCS3B01G018000 chr3D 73.399 609 118 31 1196 1779 6975223 6975812 1.920000e-43 187.0
20 TraesCS3B01G018000 chr4B 96.203 711 26 1 3346 4056 657608141 657608850 0.000000e+00 1162.0
21 TraesCS3B01G018000 chr4B 94.059 707 24 1 3350 4056 636912753 636912065 0.000000e+00 1057.0
22 TraesCS3B01G018000 chr4B 89.032 620 62 5 1 617 377935016 377934400 0.000000e+00 763.0
23 TraesCS3B01G018000 chr6B 94.374 711 21 2 3346 4056 52450523 52451214 0.000000e+00 1074.0
24 TraesCS3B01G018000 chr6B 97.196 107 3 0 738 844 173799616 173799722 8.960000e-42 182.0
25 TraesCS3B01G018000 chr6B 96.226 106 4 0 738 843 101544047 101544152 1.500000e-39 174.0
26 TraesCS3B01G018000 chr5B 94.126 715 22 3 3342 4056 646373642 646374336 0.000000e+00 1070.0
27 TraesCS3B01G018000 chr5B 95.413 109 5 0 737 845 527186766 527186658 1.500000e-39 174.0
28 TraesCS3B01G018000 chr5B 94.545 110 6 0 738 847 282083189 282083080 1.940000e-38 171.0
29 TraesCS3B01G018000 chr6D 89.211 621 60 7 1 617 317857013 317856396 0.000000e+00 769.0
30 TraesCS3B01G018000 chr6D 83.987 612 86 7 17 617 411195249 411194639 9.780000e-161 577.0
31 TraesCS3B01G018000 chr7B 88.245 621 68 5 1 617 87145511 87144892 0.000000e+00 737.0
32 TraesCS3B01G018000 chr7B 96.226 106 4 0 738 843 231724266 231724371 1.500000e-39 174.0
33 TraesCS3B01G018000 chr7A 86.288 722 48 18 3346 4056 540281691 540281010 0.000000e+00 737.0
34 TraesCS3B01G018000 chr7A 95.495 111 4 1 738 847 464568446 464568556 4.170000e-40 176.0
35 TraesCS3B01G018000 chr7A 90.265 113 11 0 3350 3462 373866118 373866006 9.080000e-32 148.0
36 TraesCS3B01G018000 chr5D 87.601 621 73 4 1 617 332940000 332940620 0.000000e+00 717.0
37 TraesCS3B01G018000 chr2A 88.455 589 54 6 3350 3925 95903229 95902642 0.000000e+00 699.0
38 TraesCS3B01G018000 chr2A 88.347 472 44 3 3350 3810 95915943 95915472 1.270000e-154 556.0
39 TraesCS3B01G018000 chr5A 84.150 612 85 7 17 617 229489622 229490232 2.100000e-162 582.0
40 TraesCS3B01G018000 chr1A 86.405 331 26 9 3745 4056 561140032 561139702 1.080000e-90 344.0
41 TraesCS3B01G018000 chr1A 88.936 235 15 2 3350 3573 71288404 71288638 3.090000e-71 279.0
42 TraesCS3B01G018000 chr1D 85.047 321 17 7 3745 4050 468141070 468140766 8.520000e-77 298.0
43 TraesCS3B01G018000 chr1D 96.262 107 4 0 738 844 470828841 470828947 4.170000e-40 176.0
44 TraesCS3B01G018000 chr2B 96.330 109 4 0 738 846 122442521 122442629 3.220000e-41 180.0
45 TraesCS3B01G018000 chr1B 96.330 109 4 0 738 846 502946039 502945931 3.220000e-41 180.0
46 TraesCS3B01G018000 chr4D 100.000 29 0 0 1200 1228 502579797 502579825 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G018000 chr3B 7381509 7385564 4055 True 7491.000000 7491 100.0000 1 4056 1 chr3B.!!$R1 4055
1 TraesCS3B01G018000 chr3B 726437326 726438034 708 True 1129.000000 1129 95.3590 3346 4056 1 chr3B.!!$R3 710
2 TraesCS3B01G018000 chr3B 681568610 681569294 684 True 647.000000 647 83.8570 2363 3055 1 chr3B.!!$R2 692
3 TraesCS3B01G018000 chr3A 14857039 14859591 2552 True 852.666667 1541 86.1930 843 3352 3 chr3A.!!$R5 2509
4 TraesCS3B01G018000 chr3A 14765784 14766697 913 False 719.000000 719 81.0900 2130 3055 1 chr3A.!!$F1 925
5 TraesCS3B01G018000 chr3A 599992546 599993154 608 True 580.000000 580 84.1760 17 617 1 chr3A.!!$R4 600
6 TraesCS3B01G018000 chr3D 6140404 6142655 2251 False 1267.500000 1269 88.0005 843 3067 2 chr3D.!!$F2 2224
7 TraesCS3B01G018000 chr3D 6167477 6168392 915 True 704.000000 704 80.8920 2130 3055 1 chr3D.!!$R1 925
8 TraesCS3B01G018000 chr3D 58989139 58989749 610 True 555.000000 555 83.3330 17 617 1 chr3D.!!$R3 600
9 TraesCS3B01G018000 chr3D 58896443 58897053 610 True 549.000000 549 83.1700 17 617 1 chr3D.!!$R2 600
10 TraesCS3B01G018000 chr4B 657608141 657608850 709 False 1162.000000 1162 96.2030 3346 4056 1 chr4B.!!$F1 710
11 TraesCS3B01G018000 chr4B 636912065 636912753 688 True 1057.000000 1057 94.0590 3350 4056 1 chr4B.!!$R2 706
12 TraesCS3B01G018000 chr4B 377934400 377935016 616 True 763.000000 763 89.0320 1 617 1 chr4B.!!$R1 616
13 TraesCS3B01G018000 chr6B 52450523 52451214 691 False 1074.000000 1074 94.3740 3346 4056 1 chr6B.!!$F1 710
14 TraesCS3B01G018000 chr5B 646373642 646374336 694 False 1070.000000 1070 94.1260 3342 4056 1 chr5B.!!$F1 714
15 TraesCS3B01G018000 chr6D 317856396 317857013 617 True 769.000000 769 89.2110 1 617 1 chr6D.!!$R1 616
16 TraesCS3B01G018000 chr6D 411194639 411195249 610 True 577.000000 577 83.9870 17 617 1 chr6D.!!$R2 600
17 TraesCS3B01G018000 chr7B 87144892 87145511 619 True 737.000000 737 88.2450 1 617 1 chr7B.!!$R1 616
18 TraesCS3B01G018000 chr7A 540281010 540281691 681 True 737.000000 737 86.2880 3346 4056 1 chr7A.!!$R2 710
19 TraesCS3B01G018000 chr5D 332940000 332940620 620 False 717.000000 717 87.6010 1 617 1 chr5D.!!$F1 616
20 TraesCS3B01G018000 chr2A 95902642 95903229 587 True 699.000000 699 88.4550 3350 3925 1 chr2A.!!$R1 575
21 TraesCS3B01G018000 chr5A 229489622 229490232 610 False 582.000000 582 84.1500 17 617 1 chr5A.!!$F1 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
806 820 0.039527 GGGTTGTTGTTGGTCGATGC 60.040 55.0 0.0 0.0 0.0 3.91 F
1837 1919 0.038166 TGGCTGGTCTGGATTTCACC 59.962 55.0 0.0 0.0 0.0 4.02 F
2857 3023 0.670546 CGCTGTCGTTGATCCACCTT 60.671 55.0 0.0 0.0 0.0 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2306 2449 0.316204 GTGCTGCTGCCAGATTTGTT 59.684 50.000 13.47 0.00 41.77 2.83 R
2991 3157 0.175760 GGCGTCTGATAGGAACAGCA 59.824 55.000 0.00 0.00 35.61 4.41 R
3817 4042 2.361357 ACGTACGAGAGGCTGCCT 60.361 61.111 23.64 23.64 36.03 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
160 163 1.301479 GTTGTCTCCGGGCGAAAGT 60.301 57.895 0.00 0.00 0.00 2.66
209 212 1.062206 GATGTCCTCGACGTCGTCC 59.938 63.158 34.40 20.97 38.54 4.79
254 262 4.468153 AGGAGACTTGGAGTTCCTATGTTC 59.532 45.833 0.00 0.00 37.44 3.18
274 282 3.382832 CTCCTCCGGTGTTCGCCT 61.383 66.667 0.00 0.00 37.59 5.52
286 294 0.603065 GTTCGCCTTTGCCCTGATTT 59.397 50.000 0.00 0.00 0.00 2.17
294 303 3.580022 CCTTTGCCCTGATTTTTCTTCCT 59.420 43.478 0.00 0.00 0.00 3.36
331 340 1.879380 CGTTGCTGGTGATTCCAAGAA 59.121 47.619 0.00 0.00 46.59 2.52
400 411 0.892063 TTTTGGCTTTACGGGGATGC 59.108 50.000 0.00 0.00 0.00 3.91
436 448 2.754664 CTTGGAGGGAGCGGCTGTTT 62.755 60.000 7.50 0.00 0.00 2.83
495 508 0.320946 TTCGGTTTTGGGTAGGCTCG 60.321 55.000 0.00 0.00 0.00 5.03
506 519 0.110823 GTAGGCTCGTTTGCGTTGTG 60.111 55.000 0.00 0.00 39.49 3.33
515 528 2.062519 GTTTGCGTTGTGGTTGTGTTT 58.937 42.857 0.00 0.00 0.00 2.83
552 565 0.616395 TGGACTAGCCGGATGTGGAA 60.616 55.000 5.05 0.00 40.66 3.53
561 575 2.575532 CCGGATGTGGAATTGTGCTAT 58.424 47.619 0.00 0.00 0.00 2.97
576 590 0.442310 GCTATGCTCGTTGTTCGCAA 59.558 50.000 0.00 0.00 37.20 4.85
619 633 8.129840 TGTACTTGATATTCTCTTCTTCTACGC 58.870 37.037 0.00 0.00 0.00 4.42
620 634 7.101652 ACTTGATATTCTCTTCTTCTACGCA 57.898 36.000 0.00 0.00 0.00 5.24
621 635 7.548097 ACTTGATATTCTCTTCTTCTACGCAA 58.452 34.615 0.00 0.00 0.00 4.85
622 636 8.200792 ACTTGATATTCTCTTCTTCTACGCAAT 58.799 33.333 0.00 0.00 0.00 3.56
623 637 8.948631 TTGATATTCTCTTCTTCTACGCAATT 57.051 30.769 0.00 0.00 0.00 2.32
624 638 8.948631 TGATATTCTCTTCTTCTACGCAATTT 57.051 30.769 0.00 0.00 0.00 1.82
625 639 8.820933 TGATATTCTCTTCTTCTACGCAATTTG 58.179 33.333 0.00 0.00 0.00 2.32
626 640 4.928661 TCTCTTCTTCTACGCAATTTGC 57.071 40.909 11.42 11.42 40.69 3.68
627 641 4.314961 TCTCTTCTTCTACGCAATTTGCA 58.685 39.130 20.56 1.88 45.36 4.08
628 642 4.937620 TCTCTTCTTCTACGCAATTTGCAT 59.062 37.500 20.56 8.74 45.36 3.96
629 643 6.106003 TCTCTTCTTCTACGCAATTTGCATA 58.894 36.000 20.56 9.48 45.36 3.14
630 644 6.036083 TCTCTTCTTCTACGCAATTTGCATAC 59.964 38.462 20.56 0.00 45.36 2.39
631 645 5.874810 TCTTCTTCTACGCAATTTGCATACT 59.125 36.000 20.56 3.15 45.36 2.12
632 646 5.718649 TCTTCTACGCAATTTGCATACTC 57.281 39.130 20.56 0.00 45.36 2.59
633 647 5.419542 TCTTCTACGCAATTTGCATACTCT 58.580 37.500 20.56 0.00 45.36 3.24
634 648 5.520288 TCTTCTACGCAATTTGCATACTCTC 59.480 40.000 20.56 0.00 45.36 3.20
635 649 4.754322 TCTACGCAATTTGCATACTCTCA 58.246 39.130 20.56 0.00 45.36 3.27
636 650 5.175127 TCTACGCAATTTGCATACTCTCAA 58.825 37.500 20.56 0.00 45.36 3.02
637 651 4.764679 ACGCAATTTGCATACTCTCAAA 57.235 36.364 20.56 0.00 45.36 2.69
638 652 5.119931 ACGCAATTTGCATACTCTCAAAA 57.880 34.783 20.56 0.00 45.36 2.44
639 653 5.527951 ACGCAATTTGCATACTCTCAAAAA 58.472 33.333 20.56 0.00 45.36 1.94
692 706 5.921962 AAAATCCAGATAAACTTGGGCTC 57.078 39.130 0.00 0.00 0.00 4.70
693 707 4.870021 AATCCAGATAAACTTGGGCTCT 57.130 40.909 0.00 0.00 0.00 4.09
694 708 5.975988 AATCCAGATAAACTTGGGCTCTA 57.024 39.130 0.00 0.00 0.00 2.43
695 709 6.521527 AATCCAGATAAACTTGGGCTCTAT 57.478 37.500 0.00 0.00 0.00 1.98
696 710 5.975988 TCCAGATAAACTTGGGCTCTATT 57.024 39.130 0.00 0.00 0.00 1.73
697 711 6.327386 TCCAGATAAACTTGGGCTCTATTT 57.673 37.500 0.00 0.00 0.00 1.40
698 712 6.731467 TCCAGATAAACTTGGGCTCTATTTT 58.269 36.000 0.00 0.00 0.00 1.82
699 713 7.867921 TCCAGATAAACTTGGGCTCTATTTTA 58.132 34.615 0.00 0.00 0.00 1.52
700 714 8.502738 TCCAGATAAACTTGGGCTCTATTTTAT 58.497 33.333 3.63 3.63 0.00 1.40
701 715 9.136323 CCAGATAAACTTGGGCTCTATTTTATT 57.864 33.333 5.18 0.00 0.00 1.40
709 723 9.487442 ACTTGGGCTCTATTTTATTAATTTGGA 57.513 29.630 0.00 0.00 0.00 3.53
710 724 9.750125 CTTGGGCTCTATTTTATTAATTTGGAC 57.250 33.333 0.00 0.00 0.00 4.02
711 725 9.487442 TTGGGCTCTATTTTATTAATTTGGACT 57.513 29.630 0.00 0.00 0.00 3.85
723 737 7.775053 ATTAATTTGGACTAGAAAAGGTGCA 57.225 32.000 0.00 0.00 32.31 4.57
724 738 7.589958 TTAATTTGGACTAGAAAAGGTGCAA 57.410 32.000 0.00 0.00 40.81 4.08
726 740 5.923733 TTTGGACTAGAAAAGGTGCAAAA 57.076 34.783 9.54 0.00 45.54 2.44
727 741 5.514274 TTGGACTAGAAAAGGTGCAAAAG 57.486 39.130 0.00 0.00 39.92 2.27
728 742 3.888930 TGGACTAGAAAAGGTGCAAAAGG 59.111 43.478 0.00 0.00 31.30 3.11
729 743 3.255888 GGACTAGAAAAGGTGCAAAAGGG 59.744 47.826 0.00 0.00 0.00 3.95
730 744 3.230976 ACTAGAAAAGGTGCAAAAGGGG 58.769 45.455 0.00 0.00 0.00 4.79
731 745 0.758734 AGAAAAGGTGCAAAAGGGGC 59.241 50.000 0.00 0.00 0.00 5.80
732 746 0.250295 GAAAAGGTGCAAAAGGGGCC 60.250 55.000 0.00 0.00 0.00 5.80
733 747 0.694105 AAAAGGTGCAAAAGGGGCCT 60.694 50.000 0.84 0.00 0.00 5.19
734 748 1.410050 AAAGGTGCAAAAGGGGCCTG 61.410 55.000 0.84 0.00 0.00 4.85
735 749 3.313524 GGTGCAAAAGGGGCCTGG 61.314 66.667 0.84 0.00 0.00 4.45
736 750 4.007644 GTGCAAAAGGGGCCTGGC 62.008 66.667 11.05 11.05 0.00 4.85
739 753 2.034999 CAAAAGGGGCCTGGCGTA 59.965 61.111 13.40 0.00 0.00 4.42
740 754 1.379843 CAAAAGGGGCCTGGCGTAT 60.380 57.895 13.40 0.00 0.00 3.06
741 755 1.379843 AAAAGGGGCCTGGCGTATG 60.380 57.895 13.40 0.00 0.00 2.39
742 756 2.150014 AAAAGGGGCCTGGCGTATGT 62.150 55.000 13.40 0.00 0.00 2.29
743 757 2.150014 AAAGGGGCCTGGCGTATGTT 62.150 55.000 13.40 0.00 0.00 2.71
744 758 2.828549 GGGGCCTGGCGTATGTTG 60.829 66.667 13.40 0.00 0.00 3.33
745 759 3.518068 GGGCCTGGCGTATGTTGC 61.518 66.667 13.40 0.00 0.00 4.17
752 766 2.125269 GCGTATGTTGCCTCGGGT 60.125 61.111 0.00 0.00 0.00 5.28
753 767 2.461110 GCGTATGTTGCCTCGGGTG 61.461 63.158 0.00 0.00 0.00 4.61
754 768 1.079405 CGTATGTTGCCTCGGGTGT 60.079 57.895 0.00 0.00 0.00 4.16
755 769 1.358725 CGTATGTTGCCTCGGGTGTG 61.359 60.000 0.00 0.00 0.00 3.82
756 770 0.321298 GTATGTTGCCTCGGGTGTGT 60.321 55.000 0.00 0.00 0.00 3.72
757 771 0.321210 TATGTTGCCTCGGGTGTGTG 60.321 55.000 0.00 0.00 0.00 3.82
758 772 3.660111 GTTGCCTCGGGTGTGTGC 61.660 66.667 0.00 0.00 0.00 4.57
762 776 4.602259 CCTCGGGTGTGTGCGTGT 62.602 66.667 0.00 0.00 0.00 4.49
763 777 3.337889 CTCGGGTGTGTGCGTGTG 61.338 66.667 0.00 0.00 0.00 3.82
766 780 3.952675 GGGTGTGTGCGTGTGCTG 61.953 66.667 0.00 0.00 43.34 4.41
767 781 3.202001 GGTGTGTGCGTGTGCTGT 61.202 61.111 0.00 0.00 43.34 4.40
768 782 2.023181 GTGTGTGCGTGTGCTGTG 59.977 61.111 0.00 0.00 43.34 3.66
769 783 3.201297 TGTGTGCGTGTGCTGTGG 61.201 61.111 0.00 0.00 43.34 4.17
770 784 3.202001 GTGTGCGTGTGCTGTGGT 61.202 61.111 0.00 0.00 43.34 4.16
771 785 3.201297 TGTGCGTGTGCTGTGGTG 61.201 61.111 0.00 0.00 43.34 4.17
772 786 3.952675 GTGCGTGTGCTGTGGTGG 61.953 66.667 0.00 0.00 43.34 4.61
776 790 3.952675 GTGTGCTGTGGTGGCGTG 61.953 66.667 0.00 0.00 0.00 5.34
781 795 3.582120 CTGTGGTGGCGTGCGTTT 61.582 61.111 0.00 0.00 0.00 3.60
782 796 3.805385 CTGTGGTGGCGTGCGTTTG 62.805 63.158 0.00 0.00 0.00 2.93
783 797 3.883180 GTGGTGGCGTGCGTTTGT 61.883 61.111 0.00 0.00 0.00 2.83
784 798 2.203029 TGGTGGCGTGCGTTTGTA 60.203 55.556 0.00 0.00 0.00 2.41
785 799 2.250190 GGTGGCGTGCGTTTGTAC 59.750 61.111 0.00 0.00 0.00 2.90
786 800 2.250190 GTGGCGTGCGTTTGTACC 59.750 61.111 0.00 0.00 0.00 3.34
787 801 3.339464 TGGCGTGCGTTTGTACCG 61.339 61.111 0.00 0.00 0.00 4.02
788 802 4.079748 GGCGTGCGTTTGTACCGG 62.080 66.667 0.00 0.00 0.00 5.28
789 803 4.079748 GCGTGCGTTTGTACCGGG 62.080 66.667 6.32 0.00 0.00 5.73
790 804 2.662527 CGTGCGTTTGTACCGGGT 60.663 61.111 6.32 4.46 0.00 5.28
791 805 2.246042 CGTGCGTTTGTACCGGGTT 61.246 57.895 4.31 0.00 0.00 4.11
792 806 1.280444 GTGCGTTTGTACCGGGTTG 59.720 57.895 4.31 0.00 0.00 3.77
793 807 1.153208 TGCGTTTGTACCGGGTTGT 60.153 52.632 4.31 0.00 0.00 3.32
794 808 0.747283 TGCGTTTGTACCGGGTTGTT 60.747 50.000 4.31 0.00 0.00 2.83
795 809 0.317186 GCGTTTGTACCGGGTTGTTG 60.317 55.000 4.31 0.00 0.00 3.33
796 810 1.015868 CGTTTGTACCGGGTTGTTGT 58.984 50.000 4.31 0.00 0.00 3.32
797 811 1.401199 CGTTTGTACCGGGTTGTTGTT 59.599 47.619 4.31 0.00 0.00 2.83
798 812 2.791849 CGTTTGTACCGGGTTGTTGTTG 60.792 50.000 4.31 0.00 0.00 3.33
799 813 1.390565 TTGTACCGGGTTGTTGTTGG 58.609 50.000 4.31 0.00 0.00 3.77
800 814 0.255318 TGTACCGGGTTGTTGTTGGT 59.745 50.000 4.31 0.00 36.72 3.67
801 815 0.946528 GTACCGGGTTGTTGTTGGTC 59.053 55.000 4.31 0.00 34.18 4.02
802 816 0.532417 TACCGGGTTGTTGTTGGTCG 60.532 55.000 4.31 0.00 34.18 4.79
803 817 1.524165 CCGGGTTGTTGTTGGTCGA 60.524 57.895 0.00 0.00 0.00 4.20
804 818 0.887387 CCGGGTTGTTGTTGGTCGAT 60.887 55.000 0.00 0.00 0.00 3.59
805 819 0.237235 CGGGTTGTTGTTGGTCGATG 59.763 55.000 0.00 0.00 0.00 3.84
806 820 0.039527 GGGTTGTTGTTGGTCGATGC 60.040 55.000 0.00 0.00 0.00 3.91
807 821 0.951558 GGTTGTTGTTGGTCGATGCT 59.048 50.000 0.00 0.00 0.00 3.79
808 822 1.336755 GGTTGTTGTTGGTCGATGCTT 59.663 47.619 0.00 0.00 0.00 3.91
809 823 2.223711 GGTTGTTGTTGGTCGATGCTTT 60.224 45.455 0.00 0.00 0.00 3.51
810 824 3.003897 GGTTGTTGTTGGTCGATGCTTTA 59.996 43.478 0.00 0.00 0.00 1.85
811 825 4.320935 GGTTGTTGTTGGTCGATGCTTTAT 60.321 41.667 0.00 0.00 0.00 1.40
812 826 5.106475 GGTTGTTGTTGGTCGATGCTTTATA 60.106 40.000 0.00 0.00 0.00 0.98
813 827 6.404293 GGTTGTTGTTGGTCGATGCTTTATAT 60.404 38.462 0.00 0.00 0.00 0.86
814 828 7.201661 GGTTGTTGTTGGTCGATGCTTTATATA 60.202 37.037 0.00 0.00 0.00 0.86
815 829 8.342634 GTTGTTGTTGGTCGATGCTTTATATAT 58.657 33.333 0.00 0.00 0.00 0.86
816 830 9.549078 TTGTTGTTGGTCGATGCTTTATATATA 57.451 29.630 0.00 0.00 0.00 0.86
817 831 9.549078 TGTTGTTGGTCGATGCTTTATATATAA 57.451 29.630 0.81 0.81 0.00 0.98
821 835 9.525007 GTTGGTCGATGCTTTATATATAAAACG 57.475 33.333 16.69 17.23 32.39 3.60
822 836 8.246908 TGGTCGATGCTTTATATATAAAACGG 57.753 34.615 16.69 8.42 32.39 4.44
823 837 7.332430 TGGTCGATGCTTTATATATAAAACGGG 59.668 37.037 16.69 8.13 32.39 5.28
824 838 7.201582 GGTCGATGCTTTATATATAAAACGGGG 60.202 40.741 16.69 7.83 32.39 5.73
825 839 6.314400 TCGATGCTTTATATATAAAACGGGGC 59.686 38.462 16.69 15.63 32.39 5.80
826 840 5.866335 TGCTTTATATATAAAACGGGGCG 57.134 39.130 16.69 6.67 32.39 6.13
827 841 5.549347 TGCTTTATATATAAAACGGGGCGA 58.451 37.500 16.69 6.81 32.39 5.54
828 842 5.996513 TGCTTTATATATAAAACGGGGCGAA 59.003 36.000 16.69 2.32 32.39 4.70
829 843 6.485984 TGCTTTATATATAAAACGGGGCGAAA 59.514 34.615 16.69 1.77 32.39 3.46
830 844 7.019418 GCTTTATATATAAAACGGGGCGAAAG 58.981 38.462 16.69 5.83 32.39 2.62
831 845 6.901265 TTTATATATAAAACGGGGCGAAAGC 58.099 36.000 14.26 0.00 41.85 3.51
880 894 2.159028 GGAGAAGGGAAACAGATCCTCG 60.159 54.545 0.00 0.00 39.57 4.63
955 972 1.005340 CTGGATTCAGAAGCAGCGAC 58.995 55.000 0.00 0.00 43.49 5.19
962 991 3.760035 GAAGCAGCGACCGGGAGA 61.760 66.667 6.32 0.00 0.00 3.71
1043 1072 2.114616 ACGCATTTCCCTCTCTGATCT 58.885 47.619 0.00 0.00 0.00 2.75
1045 1074 2.547642 CGCATTTCCCTCTCTGATCTCC 60.548 54.545 0.00 0.00 0.00 3.71
1047 1076 2.534042 TTTCCCTCTCTGATCTCCGT 57.466 50.000 0.00 0.00 0.00 4.69
1052 1081 1.409521 CCTCTCTGATCTCCGTCCAGT 60.410 57.143 0.00 0.00 0.00 4.00
1053 1082 1.946768 CTCTCTGATCTCCGTCCAGTC 59.053 57.143 0.00 0.00 0.00 3.51
1055 1084 2.025793 TCTCTGATCTCCGTCCAGTCTT 60.026 50.000 0.00 0.00 0.00 3.01
1093 1122 4.437959 CGATTCACCGCGCGCAAA 62.438 61.111 32.61 18.85 0.00 3.68
1106 1136 1.010419 GCGCAAAGCTGAATGGGTTG 61.010 55.000 0.30 1.46 44.04 3.77
1109 1139 1.892474 GCAAAGCTGAATGGGTTGGTA 59.108 47.619 0.00 0.00 0.00 3.25
1130 1160 0.322187 GTTGCCCGCTTTAGGAGGAA 60.322 55.000 0.00 0.00 37.02 3.36
1132 1162 1.820056 GCCCGCTTTAGGAGGAAGC 60.820 63.158 0.00 0.00 44.60 3.86
1140 1170 0.902984 TTAGGAGGAAGCTGGCGTGA 60.903 55.000 0.00 0.00 0.00 4.35
1141 1171 0.687757 TAGGAGGAAGCTGGCGTGAT 60.688 55.000 0.00 0.00 0.00 3.06
1142 1172 1.522580 GGAGGAAGCTGGCGTGATC 60.523 63.158 0.00 0.00 0.00 2.92
1197 1228 2.035442 GGCACCTCCGCTCAAACTC 61.035 63.158 0.00 0.00 0.00 3.01
1275 1326 1.055040 TTTGGGGGCAAATTGAGTGG 58.945 50.000 0.00 0.00 0.00 4.00
1316 1367 3.593442 ATCCCCAATTTGGAGCGATTA 57.407 42.857 17.24 0.00 40.96 1.75
1345 1418 6.096705 CAGATTTCTATGGTCTGACTCTGTCT 59.903 42.308 7.85 0.00 41.38 3.41
1346 1419 5.651387 TTTCTATGGTCTGACTCTGTCTG 57.349 43.478 7.85 0.00 33.15 3.51
1366 1439 7.809238 TGTCTGATCCAAGATAATCCTGATTT 58.191 34.615 0.00 0.00 32.50 2.17
1367 1440 8.277197 TGTCTGATCCAAGATAATCCTGATTTT 58.723 33.333 0.00 0.00 32.50 1.82
1371 1444 8.060689 TGATCCAAGATAATCCTGATTTTCCAA 58.939 33.333 0.00 0.00 31.77 3.53
1376 1449 7.607615 AGATAATCCTGATTTTCCAATTGGG 57.392 36.000 24.29 6.17 31.77 4.12
1384 1457 5.628130 TGATTTTCCAATTGGGCATTTTGA 58.372 33.333 24.29 0.00 36.21 2.69
1396 1473 2.415512 GGCATTTTGACGTCTCCTGTAC 59.584 50.000 17.92 0.95 0.00 2.90
1430 1507 7.522073 CGAAAATGGACCTTGAAATCTCTGAAA 60.522 37.037 0.00 0.00 0.00 2.69
1433 1510 7.787623 ATGGACCTTGAAATCTCTGAAAATT 57.212 32.000 0.00 0.00 0.00 1.82
1434 1511 7.219484 TGGACCTTGAAATCTCTGAAAATTC 57.781 36.000 0.00 0.00 0.00 2.17
1435 1512 6.072508 TGGACCTTGAAATCTCTGAAAATTCG 60.073 38.462 0.00 0.00 0.00 3.34
1436 1513 6.149474 GGACCTTGAAATCTCTGAAAATTCGA 59.851 38.462 0.00 0.00 0.00 3.71
1437 1514 7.148171 GGACCTTGAAATCTCTGAAAATTCGAT 60.148 37.037 0.00 0.00 0.00 3.59
1438 1515 7.756558 ACCTTGAAATCTCTGAAAATTCGATC 58.243 34.615 0.00 0.00 0.00 3.69
1439 1516 7.391554 ACCTTGAAATCTCTGAAAATTCGATCA 59.608 33.333 0.00 0.00 0.00 2.92
1440 1517 8.404000 CCTTGAAATCTCTGAAAATTCGATCAT 58.596 33.333 0.00 0.00 0.00 2.45
1443 1520 9.605275 TGAAATCTCTGAAAATTCGATCATACT 57.395 29.630 0.00 0.00 0.00 2.12
1484 1561 5.116084 TGCTTCATTACCTTAGCCATCTT 57.884 39.130 0.00 0.00 32.73 2.40
1501 1579 6.097839 AGCCATCTTTTGCATTACTGATCAAT 59.902 34.615 0.00 0.00 0.00 2.57
1505 1583 8.950961 CATCTTTTGCATTACTGATCAATAACG 58.049 33.333 0.00 0.00 0.00 3.18
1514 1592 8.736742 CATTACTGATCAATAACGTTGCATTTC 58.263 33.333 11.99 3.41 0.00 2.17
1544 1622 3.429141 CTGCAGAAGGCTGGTGCG 61.429 66.667 8.42 7.51 45.15 5.34
1597 1675 1.275573 GAAGAAGGCTAAGGTCACGGT 59.724 52.381 0.00 0.00 0.00 4.83
1598 1676 0.608640 AGAAGGCTAAGGTCACGGTG 59.391 55.000 0.56 0.56 0.00 4.94
1670 1748 0.179020 TGGAGTGCTCTGGTTGTTGG 60.179 55.000 0.00 0.00 0.00 3.77
1707 1785 5.230182 CACCAATTTTTCAGGTAAAGGAGC 58.770 41.667 0.00 0.00 33.49 4.70
1708 1786 4.022329 ACCAATTTTTCAGGTAAAGGAGCG 60.022 41.667 0.00 0.00 32.92 5.03
1713 1791 1.552578 TCAGGTAAAGGAGCGCTGTA 58.447 50.000 18.48 0.00 0.00 2.74
1737 1819 9.106070 GTAGTACAACCTAATATTCCCTTGTTG 57.894 37.037 8.88 10.03 38.01 3.33
1753 1835 9.983024 TTCCCTTGTTGAATACTTAATAATCCA 57.017 29.630 0.00 0.00 0.00 3.41
1794 1876 0.782384 GCAACTGAACTCCGTGTACG 59.218 55.000 0.00 0.00 39.44 3.67
1802 1884 2.846039 ACTCCGTGTACGAGCTATTG 57.154 50.000 5.91 0.00 43.02 1.90
1803 1885 2.362736 ACTCCGTGTACGAGCTATTGA 58.637 47.619 5.91 0.00 43.02 2.57
1811 1893 3.916172 TGTACGAGCTATTGACGTTTGAC 59.084 43.478 2.55 0.00 40.61 3.18
1814 1896 2.222596 CGAGCTATTGACGTTTGACAGC 60.223 50.000 0.00 0.00 0.00 4.40
1837 1919 0.038166 TGGCTGGTCTGGATTTCACC 59.962 55.000 0.00 0.00 0.00 4.02
1840 1922 1.815003 GCTGGTCTGGATTTCACCAAG 59.185 52.381 0.00 0.00 39.75 3.61
1841 1923 2.553028 GCTGGTCTGGATTTCACCAAGA 60.553 50.000 0.00 0.00 39.75 3.02
1842 1924 3.341823 CTGGTCTGGATTTCACCAAGAG 58.658 50.000 0.00 0.00 39.75 2.85
1847 1929 5.338381 GGTCTGGATTTCACCAAGAGTATCA 60.338 44.000 0.00 0.00 39.59 2.15
1851 1937 6.484288 TGGATTTCACCAAGAGTATCACAAT 58.516 36.000 0.00 0.00 36.96 2.71
1883 1969 7.834068 TCTGATAGTGAACTTGTAGCAAATC 57.166 36.000 0.00 0.00 0.00 2.17
1905 1991 6.688637 TCTCTTCTTGCATCAATTATGGTG 57.311 37.500 0.00 0.00 40.83 4.17
1909 1995 3.953612 TCTTGCATCAATTATGGTGTCCC 59.046 43.478 0.00 0.00 39.98 4.46
1915 2001 5.536161 GCATCAATTATGGTGTCCCTGTAAT 59.464 40.000 0.00 0.00 39.98 1.89
1916 2002 6.714810 GCATCAATTATGGTGTCCCTGTAATA 59.285 38.462 0.00 0.00 39.98 0.98
1917 2003 7.308589 GCATCAATTATGGTGTCCCTGTAATAC 60.309 40.741 0.00 0.00 39.98 1.89
1921 2007 4.660789 ATGGTGTCCCTGTAATACGTAC 57.339 45.455 0.00 0.00 0.00 3.67
1926 2012 3.119531 TGTCCCTGTAATACGTACGTTGG 60.120 47.826 27.92 17.16 35.23 3.77
2052 2143 3.343617 ACGTTCTGTCCATTTGGGTATG 58.656 45.455 0.00 0.00 38.11 2.39
2053 2144 2.097466 CGTTCTGTCCATTTGGGTATGC 59.903 50.000 0.00 0.00 38.11 3.14
2054 2145 3.088532 GTTCTGTCCATTTGGGTATGCA 58.911 45.455 0.00 0.00 38.11 3.96
2065 2157 3.003394 TGGGTATGCATTTCTCCTGTG 57.997 47.619 3.54 0.00 0.00 3.66
2078 2170 1.133407 CTCCTGTGGACGTTCTCTAGC 59.867 57.143 0.00 0.00 0.00 3.42
2080 2172 0.888619 CTGTGGACGTTCTCTAGCCA 59.111 55.000 0.00 0.00 0.00 4.75
2086 2178 2.678336 GGACGTTCTCTAGCCAATTTGG 59.322 50.000 11.27 11.27 41.55 3.28
2114 2206 6.699575 ATATGTATTTTTCTCCTGTGTGGC 57.300 37.500 0.00 0.00 35.26 5.01
2115 2207 3.153919 TGTATTTTTCTCCTGTGTGGCC 58.846 45.455 0.00 0.00 35.26 5.36
2116 2208 2.380064 ATTTTTCTCCTGTGTGGCCA 57.620 45.000 0.00 0.00 35.26 5.36
2117 2209 2.151502 TTTTTCTCCTGTGTGGCCAA 57.848 45.000 7.24 0.00 35.26 4.52
2121 2256 0.770499 TCTCCTGTGTGGCCAATCAA 59.230 50.000 7.24 0.00 35.26 2.57
2123 2258 2.173519 CTCCTGTGTGGCCAATCAATT 58.826 47.619 7.24 0.00 35.26 2.32
2142 2277 3.914426 TTTTAGCCTCTCTGGATCACC 57.086 47.619 0.00 0.00 38.35 4.02
2158 2293 2.257207 TCACCGAGAGAACCCAGATTT 58.743 47.619 0.00 0.00 0.00 2.17
2206 2341 9.698309 AAGTCATATATATGTGCAGTAACAGAC 57.302 33.333 19.78 8.19 35.26 3.51
2285 2426 5.674008 CGAAGATGCTATGCTTTGTATCAC 58.326 41.667 12.58 6.92 0.00 3.06
2299 2442 9.008965 TGCTTTGTATCACAATTACTGTACATT 57.991 29.630 0.00 0.00 38.00 2.71
2344 2500 4.457603 AGCACTTGTGTTGTTTCAGTAACA 59.542 37.500 2.61 0.00 44.81 2.41
2414 2580 2.615447 CTCTCTTTTTGTCTGCAGTGCA 59.385 45.455 18.58 18.58 36.92 4.57
2857 3023 0.670546 CGCTGTCGTTGATCCACCTT 60.671 55.000 0.00 0.00 0.00 3.50
2999 3165 2.639286 CAGGTGCGTTGCTGTTCC 59.361 61.111 0.00 0.00 0.00 3.62
3001 3167 0.602638 CAGGTGCGTTGCTGTTCCTA 60.603 55.000 0.00 0.00 0.00 2.94
3004 3170 1.438651 GTGCGTTGCTGTTCCTATCA 58.561 50.000 0.00 0.00 0.00 2.15
3063 3229 4.981674 CCTCGAGCTGAAATGAATCTAGAC 59.018 45.833 6.99 0.00 0.00 2.59
3084 3250 1.726853 AGCTGTATGCCGTTCAGTTC 58.273 50.000 0.00 0.00 44.23 3.01
3089 3255 3.132160 TGTATGCCGTTCAGTTCGAAAA 58.868 40.909 0.00 0.00 34.69 2.29
3093 3259 1.332686 GCCGTTCAGTTCGAAAACCTT 59.667 47.619 0.00 0.00 35.92 3.50
3103 3269 6.990349 TCAGTTCGAAAACCTTTACTCAATCT 59.010 34.615 0.00 0.00 35.92 2.40
3104 3270 7.042051 TCAGTTCGAAAACCTTTACTCAATCTG 60.042 37.037 0.00 0.00 35.92 2.90
3105 3271 6.990349 AGTTCGAAAACCTTTACTCAATCTGA 59.010 34.615 0.00 0.00 35.92 3.27
3141 3314 9.647918 TCTGAGACTCCATTCTATATTTGTACT 57.352 33.333 0.00 0.00 0.00 2.73
3157 3330 2.287608 TGTACTCTTGTCAGCTGTGTCG 60.288 50.000 14.67 1.63 0.00 4.35
3166 3339 1.616374 TCAGCTGTGTCGATGTGGTTA 59.384 47.619 14.67 0.00 0.00 2.85
3173 3346 5.231568 GCTGTGTCGATGTGGTTATAGTTAC 59.768 44.000 0.00 0.00 0.00 2.50
3176 3349 7.700505 TGTGTCGATGTGGTTATAGTTACTAG 58.299 38.462 0.00 0.00 0.00 2.57
3177 3350 7.337689 TGTGTCGATGTGGTTATAGTTACTAGT 59.662 37.037 0.00 0.00 0.00 2.57
3178 3351 8.830580 GTGTCGATGTGGTTATAGTTACTAGTA 58.169 37.037 0.00 0.00 0.00 1.82
3214 3387 3.404899 TGTCGAAGTTGGGTAATTGGAC 58.595 45.455 0.00 0.00 33.75 4.02
3222 3395 7.095816 CGAAGTTGGGTAATTGGACAATTTTTC 60.096 37.037 14.68 7.03 40.99 2.29
3270 3460 5.013183 ACATAGAATACCCTACTGGAATGCC 59.987 44.000 0.00 0.00 38.00 4.40
3288 3478 4.647424 TGCCTTGTTTTGTCTTGTAAGG 57.353 40.909 0.00 0.00 38.13 2.69
3291 3481 4.803613 GCCTTGTTTTGTCTTGTAAGGTTG 59.196 41.667 0.00 0.00 37.56 3.77
3298 3488 3.892284 TGTCTTGTAAGGTTGGAGCAAA 58.108 40.909 0.00 0.00 0.00 3.68
3302 3492 5.472137 GTCTTGTAAGGTTGGAGCAAACATA 59.528 40.000 0.00 0.00 32.84 2.29
3305 3495 8.052748 TCTTGTAAGGTTGGAGCAAACATATAT 58.947 33.333 0.00 0.00 32.84 0.86
3336 3526 1.289066 CCGAGAGTTCCGTTGAGCA 59.711 57.895 0.00 0.00 0.00 4.26
3339 3529 2.069273 CGAGAGTTCCGTTGAGCATTT 58.931 47.619 0.00 0.00 0.00 2.32
3340 3530 2.159787 CGAGAGTTCCGTTGAGCATTTG 60.160 50.000 0.00 0.00 0.00 2.32
3348 3538 2.489329 CCGTTGAGCATTTGACAAGGAT 59.511 45.455 0.00 0.00 33.25 3.24
3388 3578 7.490000 GTCCCTCAACTCTCTCGAAAATATAA 58.510 38.462 0.00 0.00 0.00 0.98
3471 3672 1.437397 TTAGTCCCTCGGGTGGTTTT 58.563 50.000 1.18 0.00 36.47 2.43
3480 3681 1.950909 TCGGGTGGTTTTGTTGATGAC 59.049 47.619 0.00 0.00 0.00 3.06
3575 3776 4.913924 GGCATTTCATCGAATAGTTGATGC 59.086 41.667 14.37 5.17 41.35 3.91
3766 3990 1.153549 CGGCTCTTTTCCTCCTCCG 60.154 63.158 0.00 0.00 0.00 4.63
3817 4042 1.266178 TCTTGGCGTCTTGATCCAGA 58.734 50.000 0.00 0.00 0.00 3.86
3875 4100 2.148723 AATCACCATGACGGGGCCAA 62.149 55.000 4.39 0.00 38.54 4.52
3959 4203 2.204461 TTGTTCCAGGAGACGCCGA 61.204 57.895 0.00 0.00 43.43 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 59 1.303948 CCCACAGGTGCCATCATCA 59.696 57.895 0.00 0.00 0.00 3.07
160 163 1.290203 GATTCAGCGCCGAATCAAGA 58.710 50.000 31.75 2.31 46.97 3.02
193 196 3.052082 GGGACGACGTCGAGGACA 61.052 66.667 41.52 0.00 43.02 4.02
209 212 0.742281 CACGATGCTCCCAACAGAGG 60.742 60.000 0.00 0.00 34.26 3.69
274 282 3.255642 CGAGGAAGAAAAATCAGGGCAAA 59.744 43.478 0.00 0.00 0.00 3.68
286 294 1.922135 GCATTGCGCCGAGGAAGAAA 61.922 55.000 4.18 0.00 32.41 2.52
294 303 3.507924 GACCATGCATTGCGCCGA 61.508 61.111 4.18 0.00 41.33 5.54
307 316 0.605319 GGAATCACCAGCAACGACCA 60.605 55.000 0.00 0.00 38.79 4.02
392 401 0.806102 CTGTCAACGTAGCATCCCCG 60.806 60.000 0.00 0.00 0.00 5.73
400 411 2.069273 CAAGCTTCCCTGTCAACGTAG 58.931 52.381 0.00 0.00 0.00 3.51
495 508 1.704070 AACACAACCACAACGCAAAC 58.296 45.000 0.00 0.00 0.00 2.93
506 519 0.101579 CCACCCACGAAAACACAACC 59.898 55.000 0.00 0.00 0.00 3.77
515 528 2.448582 AAGGACAGCCACCCACGAA 61.449 57.895 0.00 0.00 36.29 3.85
552 565 2.094258 CGAACAACGAGCATAGCACAAT 59.906 45.455 0.00 0.00 45.77 2.71
576 590 5.961396 AGTACAAGATGACTACAACTCGT 57.039 39.130 0.00 0.00 0.00 4.18
669 683 6.019108 AGAGCCCAAGTTTATCTGGATTTTT 58.981 36.000 0.00 0.00 0.00 1.94
670 684 5.583932 AGAGCCCAAGTTTATCTGGATTTT 58.416 37.500 0.00 0.00 0.00 1.82
671 685 5.198602 AGAGCCCAAGTTTATCTGGATTT 57.801 39.130 0.00 0.00 0.00 2.17
672 686 4.870021 AGAGCCCAAGTTTATCTGGATT 57.130 40.909 0.00 0.00 0.00 3.01
673 687 6.521527 AATAGAGCCCAAGTTTATCTGGAT 57.478 37.500 0.00 0.00 0.00 3.41
674 688 5.975988 AATAGAGCCCAAGTTTATCTGGA 57.024 39.130 0.00 0.00 0.00 3.86
675 689 8.697507 ATAAAATAGAGCCCAAGTTTATCTGG 57.302 34.615 0.00 0.00 0.00 3.86
683 697 9.487442 TCCAAATTAATAAAATAGAGCCCAAGT 57.513 29.630 0.00 0.00 0.00 3.16
684 698 9.750125 GTCCAAATTAATAAAATAGAGCCCAAG 57.250 33.333 0.00 0.00 0.00 3.61
685 699 9.487442 AGTCCAAATTAATAAAATAGAGCCCAA 57.513 29.630 0.00 0.00 0.00 4.12
697 711 9.303116 TGCACCTTTTCTAGTCCAAATTAATAA 57.697 29.630 0.00 0.00 0.00 1.40
698 712 8.871629 TGCACCTTTTCTAGTCCAAATTAATA 57.128 30.769 0.00 0.00 0.00 0.98
699 713 7.775053 TGCACCTTTTCTAGTCCAAATTAAT 57.225 32.000 0.00 0.00 0.00 1.40
700 714 7.589958 TTGCACCTTTTCTAGTCCAAATTAA 57.410 32.000 0.00 0.00 0.00 1.40
701 715 7.589958 TTTGCACCTTTTCTAGTCCAAATTA 57.410 32.000 0.00 0.00 0.00 1.40
702 716 6.478512 TTTGCACCTTTTCTAGTCCAAATT 57.521 33.333 0.00 0.00 0.00 1.82
703 717 6.462909 CCTTTTGCACCTTTTCTAGTCCAAAT 60.463 38.462 0.00 0.00 0.00 2.32
704 718 5.163457 CCTTTTGCACCTTTTCTAGTCCAAA 60.163 40.000 0.00 0.00 0.00 3.28
705 719 4.340950 CCTTTTGCACCTTTTCTAGTCCAA 59.659 41.667 0.00 0.00 0.00 3.53
706 720 3.888930 CCTTTTGCACCTTTTCTAGTCCA 59.111 43.478 0.00 0.00 0.00 4.02
707 721 3.255888 CCCTTTTGCACCTTTTCTAGTCC 59.744 47.826 0.00 0.00 0.00 3.85
708 722 3.255888 CCCCTTTTGCACCTTTTCTAGTC 59.744 47.826 0.00 0.00 0.00 2.59
709 723 3.230976 CCCCTTTTGCACCTTTTCTAGT 58.769 45.455 0.00 0.00 0.00 2.57
710 724 2.029020 GCCCCTTTTGCACCTTTTCTAG 60.029 50.000 0.00 0.00 0.00 2.43
711 725 1.967779 GCCCCTTTTGCACCTTTTCTA 59.032 47.619 0.00 0.00 0.00 2.10
712 726 0.758734 GCCCCTTTTGCACCTTTTCT 59.241 50.000 0.00 0.00 0.00 2.52
713 727 0.250295 GGCCCCTTTTGCACCTTTTC 60.250 55.000 0.00 0.00 0.00 2.29
714 728 0.694105 AGGCCCCTTTTGCACCTTTT 60.694 50.000 0.00 0.00 0.00 2.27
715 729 1.074547 AGGCCCCTTTTGCACCTTT 60.075 52.632 0.00 0.00 0.00 3.11
716 730 1.838396 CAGGCCCCTTTTGCACCTT 60.838 57.895 0.00 0.00 0.00 3.50
717 731 2.203684 CAGGCCCCTTTTGCACCT 60.204 61.111 0.00 0.00 0.00 4.00
718 732 3.313524 CCAGGCCCCTTTTGCACC 61.314 66.667 0.00 0.00 0.00 5.01
719 733 4.007644 GCCAGGCCCCTTTTGCAC 62.008 66.667 0.00 0.00 0.00 4.57
722 736 1.379843 ATACGCCAGGCCCCTTTTG 60.380 57.895 5.63 0.00 0.00 2.44
723 737 1.379843 CATACGCCAGGCCCCTTTT 60.380 57.895 5.63 0.00 0.00 2.27
724 738 2.150014 AACATACGCCAGGCCCCTTT 62.150 55.000 5.63 0.00 0.00 3.11
725 739 2.612493 AACATACGCCAGGCCCCTT 61.612 57.895 5.63 0.00 0.00 3.95
726 740 3.015145 AACATACGCCAGGCCCCT 61.015 61.111 5.63 0.00 0.00 4.79
727 741 2.828549 CAACATACGCCAGGCCCC 60.829 66.667 5.63 0.00 0.00 5.80
728 742 3.518068 GCAACATACGCCAGGCCC 61.518 66.667 5.63 0.00 0.00 5.80
735 749 2.125269 ACCCGAGGCAACATACGC 60.125 61.111 0.00 0.00 41.41 4.42
736 750 1.079405 ACACCCGAGGCAACATACG 60.079 57.895 0.00 0.00 41.41 3.06
737 751 0.321298 ACACACCCGAGGCAACATAC 60.321 55.000 0.00 0.00 41.41 2.39
738 752 0.321210 CACACACCCGAGGCAACATA 60.321 55.000 0.00 0.00 41.41 2.29
739 753 1.600636 CACACACCCGAGGCAACAT 60.601 57.895 0.00 0.00 41.41 2.71
740 754 2.203139 CACACACCCGAGGCAACA 60.203 61.111 0.00 0.00 41.41 3.33
741 755 3.660111 GCACACACCCGAGGCAAC 61.660 66.667 0.00 0.00 0.00 4.17
745 759 4.602259 ACACGCACACACCCGAGG 62.602 66.667 0.00 0.00 0.00 4.63
746 760 3.337889 CACACGCACACACCCGAG 61.338 66.667 0.00 0.00 0.00 4.63
749 763 3.952675 CAGCACACGCACACACCC 61.953 66.667 0.00 0.00 42.27 4.61
750 764 3.202001 ACAGCACACGCACACACC 61.202 61.111 0.00 0.00 42.27 4.16
751 765 2.023181 CACAGCACACGCACACAC 59.977 61.111 0.00 0.00 42.27 3.82
752 766 3.201297 CCACAGCACACGCACACA 61.201 61.111 0.00 0.00 42.27 3.72
753 767 3.202001 ACCACAGCACACGCACAC 61.202 61.111 0.00 0.00 42.27 3.82
754 768 3.201297 CACCACAGCACACGCACA 61.201 61.111 0.00 0.00 42.27 4.57
755 769 3.952675 CCACCACAGCACACGCAC 61.953 66.667 0.00 0.00 42.27 5.34
759 773 3.952675 CACGCCACCACAGCACAC 61.953 66.667 0.00 0.00 0.00 3.82
764 778 3.582120 AAACGCACGCCACCACAG 61.582 61.111 0.00 0.00 0.00 3.66
765 779 3.882013 CAAACGCACGCCACCACA 61.882 61.111 0.00 0.00 0.00 4.17
766 780 2.535788 TACAAACGCACGCCACCAC 61.536 57.895 0.00 0.00 0.00 4.16
767 781 2.203029 TACAAACGCACGCCACCA 60.203 55.556 0.00 0.00 0.00 4.17
768 782 2.250190 GTACAAACGCACGCCACC 59.750 61.111 0.00 0.00 0.00 4.61
769 783 2.250190 GGTACAAACGCACGCCAC 59.750 61.111 0.00 0.00 0.00 5.01
770 784 3.339464 CGGTACAAACGCACGCCA 61.339 61.111 0.00 0.00 0.00 5.69
771 785 4.079748 CCGGTACAAACGCACGCC 62.080 66.667 0.00 0.00 0.00 5.68
772 786 4.079748 CCCGGTACAAACGCACGC 62.080 66.667 0.00 0.00 0.00 5.34
773 787 2.246042 AACCCGGTACAAACGCACG 61.246 57.895 0.00 0.00 0.00 5.34
774 788 1.280444 CAACCCGGTACAAACGCAC 59.720 57.895 0.00 0.00 0.00 5.34
775 789 0.747283 AACAACCCGGTACAAACGCA 60.747 50.000 0.00 0.00 0.00 5.24
776 790 0.317186 CAACAACCCGGTACAAACGC 60.317 55.000 0.00 0.00 0.00 4.84
777 791 1.015868 ACAACAACCCGGTACAAACG 58.984 50.000 0.00 0.00 0.00 3.60
778 792 2.479901 CCAACAACAACCCGGTACAAAC 60.480 50.000 0.00 0.00 0.00 2.93
779 793 1.749634 CCAACAACAACCCGGTACAAA 59.250 47.619 0.00 0.00 0.00 2.83
780 794 1.340795 ACCAACAACAACCCGGTACAA 60.341 47.619 0.00 0.00 0.00 2.41
781 795 0.255318 ACCAACAACAACCCGGTACA 59.745 50.000 0.00 0.00 0.00 2.90
782 796 0.946528 GACCAACAACAACCCGGTAC 59.053 55.000 0.00 0.00 0.00 3.34
783 797 0.532417 CGACCAACAACAACCCGGTA 60.532 55.000 0.00 0.00 0.00 4.02
784 798 1.820481 CGACCAACAACAACCCGGT 60.820 57.895 0.00 0.00 0.00 5.28
785 799 0.887387 ATCGACCAACAACAACCCGG 60.887 55.000 0.00 0.00 0.00 5.73
786 800 0.237235 CATCGACCAACAACAACCCG 59.763 55.000 0.00 0.00 0.00 5.28
787 801 0.039527 GCATCGACCAACAACAACCC 60.040 55.000 0.00 0.00 0.00 4.11
788 802 0.951558 AGCATCGACCAACAACAACC 59.048 50.000 0.00 0.00 0.00 3.77
789 803 2.774439 AAGCATCGACCAACAACAAC 57.226 45.000 0.00 0.00 0.00 3.32
790 804 6.751514 ATATAAAGCATCGACCAACAACAA 57.248 33.333 0.00 0.00 0.00 2.83
791 805 9.549078 TTATATATAAAGCATCGACCAACAACA 57.451 29.630 2.56 0.00 0.00 3.33
795 809 9.525007 CGTTTTATATATAAAGCATCGACCAAC 57.475 33.333 23.58 12.81 34.42 3.77
796 810 8.714179 CCGTTTTATATATAAAGCATCGACCAA 58.286 33.333 23.58 4.56 34.42 3.67
797 811 7.332430 CCCGTTTTATATATAAAGCATCGACCA 59.668 37.037 23.58 5.13 34.42 4.02
798 812 7.201582 CCCCGTTTTATATATAAAGCATCGACC 60.202 40.741 23.58 6.55 34.42 4.79
799 813 7.675637 GCCCCGTTTTATATATAAAGCATCGAC 60.676 40.741 23.58 14.87 34.42 4.20
800 814 6.314400 GCCCCGTTTTATATATAAAGCATCGA 59.686 38.462 23.58 6.83 34.42 3.59
801 815 6.483687 GCCCCGTTTTATATATAAAGCATCG 58.516 40.000 23.58 20.04 34.42 3.84
802 816 6.314400 TCGCCCCGTTTTATATATAAAGCATC 59.686 38.462 23.58 13.19 34.42 3.91
803 817 6.174760 TCGCCCCGTTTTATATATAAAGCAT 58.825 36.000 23.58 0.00 34.42 3.79
804 818 5.549347 TCGCCCCGTTTTATATATAAAGCA 58.451 37.500 23.58 8.55 34.42 3.91
805 819 6.484818 TTCGCCCCGTTTTATATATAAAGC 57.515 37.500 17.54 17.54 34.13 3.51
806 820 7.019418 GCTTTCGCCCCGTTTTATATATAAAG 58.981 38.462 15.65 7.49 34.13 1.85
807 821 6.901265 GCTTTCGCCCCGTTTTATATATAAA 58.099 36.000 12.90 12.90 0.00 1.40
808 822 6.484818 GCTTTCGCCCCGTTTTATATATAA 57.515 37.500 0.81 0.81 0.00 0.98
824 838 2.691984 TTACCGAAAAAGGCTTTCGC 57.308 45.000 13.76 7.41 46.89 4.70
825 839 3.561503 CCTTTACCGAAAAAGGCTTTCG 58.438 45.455 13.76 13.37 46.66 3.46
832 846 1.544246 CAGGCCCCTTTACCGAAAAAG 59.456 52.381 0.00 3.29 36.43 2.27
833 847 1.623163 CAGGCCCCTTTACCGAAAAA 58.377 50.000 0.00 0.00 0.00 1.94
834 848 0.251430 CCAGGCCCCTTTACCGAAAA 60.251 55.000 0.00 0.00 0.00 2.29
835 849 1.381076 CCAGGCCCCTTTACCGAAA 59.619 57.895 0.00 0.00 0.00 3.46
836 850 3.083386 CCAGGCCCCTTTACCGAA 58.917 61.111 0.00 0.00 0.00 4.30
837 851 3.723922 GCCAGGCCCCTTTACCGA 61.724 66.667 0.00 0.00 0.00 4.69
839 853 1.991339 ATACGCCAGGCCCCTTTACC 61.991 60.000 5.63 0.00 0.00 2.85
840 854 0.818040 CATACGCCAGGCCCCTTTAC 60.818 60.000 5.63 0.00 0.00 2.01
841 855 1.529796 CATACGCCAGGCCCCTTTA 59.470 57.895 5.63 0.00 0.00 1.85
848 862 1.227674 CCTTCTCCATACGCCAGGC 60.228 63.158 0.00 0.00 0.00 4.85
880 894 1.737008 GCGGTTGTCGAGGGAGAAC 60.737 63.158 0.00 0.00 43.65 3.01
955 972 4.511838 GAGATCTCCCTCTCCCGG 57.488 66.667 12.00 0.00 36.47 5.73
1043 1072 1.618837 CAGGAAGAAAGACTGGACGGA 59.381 52.381 0.00 0.00 0.00 4.69
1045 1074 1.270305 TGCAGGAAGAAAGACTGGACG 60.270 52.381 0.00 0.00 32.98 4.79
1047 1076 2.487265 GGTTGCAGGAAGAAAGACTGGA 60.487 50.000 0.00 0.00 32.98 3.86
1052 1081 0.889186 GGCGGTTGCAGGAAGAAAGA 60.889 55.000 0.00 0.00 45.35 2.52
1053 1082 1.581447 GGCGGTTGCAGGAAGAAAG 59.419 57.895 0.00 0.00 45.35 2.62
1055 1084 2.668212 CGGCGGTTGCAGGAAGAA 60.668 61.111 0.00 0.00 45.35 2.52
1088 1117 0.388907 CCAACCCATTCAGCTTTGCG 60.389 55.000 0.00 0.00 0.00 4.85
1092 1121 1.710809 ACCTACCAACCCATTCAGCTT 59.289 47.619 0.00 0.00 0.00 3.74
1093 1122 1.372501 ACCTACCAACCCATTCAGCT 58.627 50.000 0.00 0.00 0.00 4.24
1098 1127 3.374318 GGCAACCTACCAACCCATT 57.626 52.632 0.00 0.00 0.00 3.16
1132 1162 4.457496 AGGCCACGATCACGCCAG 62.457 66.667 5.01 0.00 45.56 4.85
1140 1170 3.461773 CCTCCGTCAGGCCACGAT 61.462 66.667 16.63 0.00 42.69 3.73
1235 1286 1.740296 CTAAACGTCTGGCCACCGG 60.740 63.158 20.73 0.00 0.00 5.28
1244 1295 0.402887 CCCCCAAACCCTAAACGTCT 59.597 55.000 0.00 0.00 0.00 4.18
1247 1298 0.828343 TTGCCCCCAAACCCTAAACG 60.828 55.000 0.00 0.00 0.00 3.60
1297 1348 3.593442 ATAATCGCTCCAAATTGGGGA 57.407 42.857 17.51 9.73 41.85 4.81
1316 1367 5.999044 AGTCAGACCATAGAAATCTGCAAT 58.001 37.500 0.00 0.00 39.80 3.56
1345 1418 7.585440 TGGAAAATCAGGATTATCTTGGATCA 58.415 34.615 4.52 0.00 0.00 2.92
1346 1419 8.469309 TTGGAAAATCAGGATTATCTTGGATC 57.531 34.615 4.52 0.00 0.00 3.36
1366 1439 2.366916 ACGTCAAAATGCCCAATTGGAA 59.633 40.909 26.60 13.89 37.39 3.53
1367 1440 1.967066 ACGTCAAAATGCCCAATTGGA 59.033 42.857 26.60 7.24 37.39 3.53
1371 1444 1.818674 GGAGACGTCAAAATGCCCAAT 59.181 47.619 19.50 0.00 0.00 3.16
1376 1449 2.415512 GGTACAGGAGACGTCAAAATGC 59.584 50.000 19.50 1.69 0.00 3.56
1384 1457 1.617357 GAAGGTTGGTACAGGAGACGT 59.383 52.381 0.00 0.00 42.39 4.34
1396 1473 2.514803 AGGTCCATTTTCGAAGGTTGG 58.485 47.619 13.86 13.86 0.00 3.77
1463 1540 6.268566 CAAAAGATGGCTAAGGTAATGAAGC 58.731 40.000 0.00 0.00 0.00 3.86
1469 1546 6.889722 AGTAATGCAAAAGATGGCTAAGGTAA 59.110 34.615 0.00 0.00 0.00 2.85
1471 1548 5.126061 CAGTAATGCAAAAGATGGCTAAGGT 59.874 40.000 0.00 0.00 0.00 3.50
1484 1561 6.526325 GCAACGTTATTGATCAGTAATGCAAA 59.474 34.615 23.07 0.00 0.00 3.68
1514 1592 3.092192 CTGCAGATTGCTCACGGCG 62.092 63.158 8.42 4.80 45.31 6.46
1607 1685 4.760047 ATCGTGGACACCGCAGCC 62.760 66.667 0.00 0.00 32.88 4.85
1619 1697 3.364023 GGTTTACGTTGAGAGTGATCGTG 59.636 47.826 0.00 0.00 36.24 4.35
1621 1699 2.921754 GGGTTTACGTTGAGAGTGATCG 59.078 50.000 0.00 0.00 0.00 3.69
1707 1785 5.924825 GGGAATATTAGGTTGTACTACAGCG 59.075 44.000 9.65 0.00 29.43 5.18
1708 1786 7.063934 AGGGAATATTAGGTTGTACTACAGC 57.936 40.000 9.65 0.00 0.00 4.40
1713 1791 7.924541 TCAACAAGGGAATATTAGGTTGTACT 58.075 34.615 8.46 0.00 36.46 2.73
1748 1830 9.059023 AGGGTTAAGACTTTACTAGAATGGATT 57.941 33.333 0.00 0.00 0.00 3.01
1749 1831 8.487028 CAGGGTTAAGACTTTACTAGAATGGAT 58.513 37.037 0.00 0.00 0.00 3.41
1753 1835 7.253905 TGCAGGGTTAAGACTTTACTAGAAT 57.746 36.000 0.00 0.00 0.00 2.40
1756 1838 6.369065 CAGTTGCAGGGTTAAGACTTTACTAG 59.631 42.308 4.48 0.00 0.00 2.57
1761 1843 4.164843 TCAGTTGCAGGGTTAAGACTTT 57.835 40.909 0.00 0.00 0.00 2.66
1794 1876 2.736721 TGCTGTCAAACGTCAATAGCTC 59.263 45.455 12.40 0.00 0.00 4.09
1802 1884 0.385974 GCCACATGCTGTCAAACGTC 60.386 55.000 0.00 0.00 36.87 4.34
1803 1885 1.654220 GCCACATGCTGTCAAACGT 59.346 52.632 0.00 0.00 36.87 3.99
1814 1896 1.747355 GAAATCCAGACCAGCCACATG 59.253 52.381 0.00 0.00 0.00 3.21
1868 1954 6.082984 GCAAGAAGAGATTTGCTACAAGTTC 58.917 40.000 2.22 0.00 44.70 3.01
1869 1955 6.006759 GCAAGAAGAGATTTGCTACAAGTT 57.993 37.500 2.22 0.00 44.70 2.66
1883 1969 6.446781 ACACCATAATTGATGCAAGAAGAG 57.553 37.500 0.00 0.00 33.79 2.85
1897 1983 5.881923 ACGTATTACAGGGACACCATAAT 57.118 39.130 0.00 0.00 40.13 1.28
1905 1991 3.119495 ACCAACGTACGTATTACAGGGAC 60.119 47.826 23.12 0.00 0.00 4.46
1921 2007 6.496571 AGAATCTAGAATTCTACGACCAACG 58.503 40.000 11.24 0.00 36.68 4.10
1983 2071 3.636300 GCCAATATGCCCACACATCTTAA 59.364 43.478 0.00 0.00 0.00 1.85
1984 2072 3.221771 GCCAATATGCCCACACATCTTA 58.778 45.455 0.00 0.00 0.00 2.10
1985 2073 2.034124 GCCAATATGCCCACACATCTT 58.966 47.619 0.00 0.00 0.00 2.40
1986 2074 1.696063 GCCAATATGCCCACACATCT 58.304 50.000 0.00 0.00 0.00 2.90
1987 2075 0.675633 GGCCAATATGCCCACACATC 59.324 55.000 0.00 0.00 46.11 3.06
1988 2076 2.824961 GGCCAATATGCCCACACAT 58.175 52.632 0.00 0.00 46.11 3.21
1989 2077 4.353325 GGCCAATATGCCCACACA 57.647 55.556 0.00 0.00 46.11 3.72
2014 2102 7.648142 ACAGAACGTCAAACACATAATGAAAT 58.352 30.769 0.00 0.00 0.00 2.17
2052 2143 1.464997 GAACGTCCACAGGAGAAATGC 59.535 52.381 0.00 0.00 29.39 3.56
2053 2144 2.996621 GAGAACGTCCACAGGAGAAATG 59.003 50.000 0.00 0.00 29.39 2.32
2054 2145 2.900546 AGAGAACGTCCACAGGAGAAAT 59.099 45.455 0.00 0.00 29.39 2.17
2065 2157 2.678336 CCAAATTGGCTAGAGAACGTCC 59.322 50.000 0.00 0.00 0.00 4.79
2091 2183 5.594317 GGCCACACAGGAGAAAAATACATAT 59.406 40.000 0.00 0.00 41.22 1.78
2095 2187 3.153919 TGGCCACACAGGAGAAAAATAC 58.846 45.455 0.00 0.00 41.22 1.89
2096 2188 3.517296 TGGCCACACAGGAGAAAAATA 57.483 42.857 0.00 0.00 41.22 1.40
2097 2189 2.380064 TGGCCACACAGGAGAAAAAT 57.620 45.000 0.00 0.00 41.22 1.82
2100 2192 1.144708 TGATTGGCCACACAGGAGAAA 59.855 47.619 3.88 0.00 41.22 2.52
2113 2205 4.202090 CCAGAGAGGCTAAAATTGATTGGC 60.202 45.833 0.00 0.00 36.19 4.52
2114 2206 5.195940 TCCAGAGAGGCTAAAATTGATTGG 58.804 41.667 0.00 0.00 37.29 3.16
2115 2207 6.544931 TGATCCAGAGAGGCTAAAATTGATTG 59.455 38.462 0.00 0.00 37.29 2.67
2116 2208 6.545298 GTGATCCAGAGAGGCTAAAATTGATT 59.455 38.462 0.00 0.00 37.29 2.57
2117 2209 6.060788 GTGATCCAGAGAGGCTAAAATTGAT 58.939 40.000 0.00 0.00 37.29 2.57
2121 2256 3.181461 CGGTGATCCAGAGAGGCTAAAAT 60.181 47.826 0.00 0.00 37.29 1.82
2123 2258 1.757118 CGGTGATCCAGAGAGGCTAAA 59.243 52.381 0.00 0.00 37.29 1.85
2142 2277 5.701290 AGTTTGTTAAATCTGGGTTCTCTCG 59.299 40.000 0.00 0.00 0.00 4.04
2158 2293 8.967664 ACTTTCATGGTAGTAACAGTTTGTTA 57.032 30.769 0.00 0.00 41.45 2.41
2194 2329 1.946768 GGCACAAAGTCTGTTACTGCA 59.053 47.619 0.00 0.00 38.88 4.41
2299 2442 4.393834 TGCTGCCAGATTTGTTACTTACA 58.606 39.130 0.00 0.00 34.12 2.41
2305 2448 1.541147 GTGCTGCTGCCAGATTTGTTA 59.459 47.619 13.47 0.00 41.77 2.41
2306 2449 0.316204 GTGCTGCTGCCAGATTTGTT 59.684 50.000 13.47 0.00 41.77 2.83
2376 2537 8.753497 AAAAGAGAGAAACAGGAACATAAAGT 57.247 30.769 0.00 0.00 0.00 2.66
2379 2540 8.519799 ACAAAAAGAGAGAAACAGGAACATAA 57.480 30.769 0.00 0.00 0.00 1.90
2414 2580 3.302161 AGCATGTGATATGGCCATTTGT 58.698 40.909 26.37 10.77 0.00 2.83
2530 2696 3.027170 GAACGAGCACGGCATGGTG 62.027 63.158 8.74 0.00 44.46 4.17
2728 2894 1.690985 GCTCAGGGGGTAGAGGCTT 60.691 63.158 0.00 0.00 32.54 4.35
2846 3012 2.224523 GGTCACTCACAAGGTGGATCAA 60.225 50.000 0.00 0.00 35.61 2.57
2857 3023 0.963225 TTTCGATCGGGTCACTCACA 59.037 50.000 16.41 0.00 0.00 3.58
2983 3149 0.324943 ATAGGAACAGCAACGCACCT 59.675 50.000 0.00 0.00 0.00 4.00
2991 3157 0.175760 GGCGTCTGATAGGAACAGCA 59.824 55.000 0.00 0.00 35.61 4.41
2999 3165 0.525668 GACCACACGGCGTCTGATAG 60.526 60.000 17.00 3.95 34.57 2.08
3001 3167 2.214181 GAGACCACACGGCGTCTGAT 62.214 60.000 17.00 0.00 39.44 2.90
3004 3170 3.681835 GGAGACCACACGGCGTCT 61.682 66.667 10.85 3.06 42.02 4.18
3063 3229 1.442769 ACTGAACGGCATACAGCTTG 58.557 50.000 0.00 0.00 44.79 4.01
3084 3250 8.480643 ACTATCAGATTGAGTAAAGGTTTTCG 57.519 34.615 0.00 0.00 0.00 3.46
3103 3269 8.774546 AATGGAGTCTCAGAATTCTACTATCA 57.225 34.615 7.86 10.32 0.00 2.15
3104 3270 9.077885 AGAATGGAGTCTCAGAATTCTACTATC 57.922 37.037 7.86 5.44 36.17 2.08
3133 3306 4.708177 ACACAGCTGACAAGAGTACAAAT 58.292 39.130 23.35 0.00 0.00 2.32
3135 3308 3.717707 GACACAGCTGACAAGAGTACAA 58.282 45.455 23.35 0.00 0.00 2.41
3139 3312 1.032794 TCGACACAGCTGACAAGAGT 58.967 50.000 23.35 8.45 0.00 3.24
3141 3314 1.341209 ACATCGACACAGCTGACAAGA 59.659 47.619 23.35 14.31 0.00 3.02
3145 3318 0.319900 ACCACATCGACACAGCTGAC 60.320 55.000 23.35 10.28 0.00 3.51
3146 3319 0.392706 AACCACATCGACACAGCTGA 59.607 50.000 23.35 0.00 0.00 4.26
3178 3351 9.273016 CCAACTTCGACAGTTCCAATATAATAT 57.727 33.333 9.20 0.00 44.60 1.28
3182 3355 5.046159 ACCCAACTTCGACAGTTCCAATATA 60.046 40.000 9.20 0.00 44.60 0.86
3183 3356 4.261801 CCCAACTTCGACAGTTCCAATAT 58.738 43.478 9.20 0.00 44.60 1.28
3184 3357 3.071892 ACCCAACTTCGACAGTTCCAATA 59.928 43.478 9.20 0.00 44.60 1.90
3185 3358 2.158667 ACCCAACTTCGACAGTTCCAAT 60.159 45.455 9.20 0.00 44.60 3.16
3188 3361 2.825861 TACCCAACTTCGACAGTTCC 57.174 50.000 9.20 0.00 44.60 3.62
3191 3364 3.071892 TCCAATTACCCAACTTCGACAGT 59.928 43.478 0.00 0.00 37.30 3.55
3192 3365 3.435671 GTCCAATTACCCAACTTCGACAG 59.564 47.826 0.00 0.00 0.00 3.51
3214 3387 8.947055 ATCCCCAGAAAATTATCGAAAAATTG 57.053 30.769 9.18 0.12 0.00 2.32
3255 3445 1.372501 ACAAGGCATTCCAGTAGGGT 58.627 50.000 0.00 0.00 38.11 4.34
3270 3460 6.202516 TCCAACCTTACAAGACAAAACAAG 57.797 37.500 0.00 0.00 0.00 3.16
3288 3478 7.744087 TCCATGTATATATGTTTGCTCCAAC 57.256 36.000 8.46 0.00 0.00 3.77
3291 3481 7.928307 ACATCCATGTATATATGTTTGCTCC 57.072 36.000 8.46 0.00 39.68 4.70
3298 3488 6.833933 TCTCGGCTACATCCATGTATATATGT 59.166 38.462 8.46 0.00 41.92 2.29
3302 3492 5.265191 ACTCTCGGCTACATCCATGTATAT 58.735 41.667 0.00 0.00 41.92 0.86
3305 3495 2.945456 ACTCTCGGCTACATCCATGTA 58.055 47.619 0.00 0.00 41.97 2.29
3348 3538 9.374838 GAGTTGAGGGACGAAAAATATACTTAA 57.625 33.333 0.00 0.00 0.00 1.85
3388 3578 3.396260 TCGAAGTTGAGGGACGATTTT 57.604 42.857 0.00 0.00 0.00 1.82
3471 3672 0.250684 ACCATGCCACGTCATCAACA 60.251 50.000 0.00 0.00 0.00 3.33
3480 3681 4.963815 GGTCAAAACCATGCCACG 57.036 55.556 0.00 0.00 45.68 4.94
3575 3776 3.108289 CACGAGCCAGAGTGTGCG 61.108 66.667 0.00 0.00 33.97 5.34
3709 3933 2.866460 GCTCAAGGTTCAAGCTACGACA 60.866 50.000 0.00 0.00 33.23 4.35
3817 4042 2.361357 ACGTACGAGAGGCTGCCT 60.361 61.111 23.64 23.64 36.03 4.75
3959 4203 3.873679 TACTGTCCCTGTCCGGCGT 62.874 63.158 6.01 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.